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Basic implementation of ViennaRNA for prediction of primer dimers and secondary structure #268

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dgruano opened this issue Sep 24, 2024 · 2 comments
Open

Basic implementation of ViennaRNA for prediction of primer dimers and secondary structure #268

dgruano opened this issue Sep 24, 2024 · 2 comments

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@dgruano
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dgruano commented Sep 24, 2024

We could use https://github.com/ViennaRNA/ViennaRNA to score the designed primers for secondary structure and thr probability of producing primer dimers.
@hiyama341
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Have used primer3 for this as well, don't if it is worse or better. But agree, it would be nice to have as attributes to the primers.

@BjornFJohansson
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See #229

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@BjornFJohansson @dgruano @hiyama341