diff --git a/.buildinfo b/.buildinfo new file mode 100644 index 00000000..ae582d67 --- /dev/null +++ b/.buildinfo @@ -0,0 +1,4 @@ +# Sphinx build info version 1 +# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. +config: e1ad02ce3592def18a437f1884177507 +tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/.git_archival.json b/.git_archival.json deleted file mode 100644 index 0b8cd6d3..00000000 --- a/.git_archival.json +++ /dev/null @@ -1,6 +0,0 @@ -{ - "hash-full": "$Format:%H$", - "hash-short": "$Format:%h$", - "timestamp": "$Format:%cI$", - "describe": "$Format:%(describe:tags=true,match=v[0-9]*)$" -} diff --git a/.github/workflows/publish-docs.yml b/.github/workflows/publish-docs.yml new file mode 100644 index 00000000..63f407a3 --- /dev/null +++ b/.github/workflows/publish-docs.yml @@ -0,0 +1,53 @@ +on: [push, pull_request] + +name: "Documentation Status" + +permissions: + contents: write + +jobs: + build-and-publish: + if: "! contains(github.event.head_commit.message, '[ci skip]')" + + timeout-minutes: 10 + + runs-on: ubuntu-latest + + strategy: + fail-fast: false + + steps: + - uses: actions/checkout@v4 + + - name: Set up Python + uses: actions/setup-python@v4 + + - name: Session information + run: | + python --version + + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs.prefer-active-python: true + + - name: ๐Ÿ”ฉ list Poetry settings + run: poetry config --list + + - name: ๐Ÿ”ฉ Install with Poetry + run: poetry install --all-extras --with docs + + - name: Build documentation + run: | + cd docs + poetry run bash autogen_docs.sh + poetry run make html + + - name: Deploy to GitHub pages ๐Ÿš€ + # Deploy only when master changes + if: github.ref == 'refs/heads/master' && github.event_name == 'push' + uses: JamesIves/github-pages-deploy-action@v4.6.0 + with: + clean: false + branch: gh-pages + folder: docs/_build/html diff --git a/.github/workflows/pydna_test_and_coverage_workflow.yml b/.github/workflows/pydna_test_and_coverage_workflow.yml index d9a6d869..09e2cd82 100644 --- a/.github/workflows/pydna_test_and_coverage_workflow.yml +++ b/.github/workflows/pydna_test_and_coverage_workflow.yml @@ -2,11 +2,11 @@ name: Tests & Coverage on: push: branches: - - '**' - - '!master' # excludes master branch - - '!testpypi' # excludes testpypi branch + - "**" + - "!master" # excludes master branch + - "!testpypi" # excludes testpypi branch tags-ignore: - - '*.*' + - "*.*" pull_request: {} jobs: build: @@ -14,20 +14,20 @@ jobs: strategy: fail-fast: false matrix: - os: [ 'macos-latest', 'windows-latest' ] + os: ["macos-latest", "windows-latest"] python-version: ["3.12", "3.11", "3.10", "3.9", "3.8"] include: - - os: ubuntu-latest - python-version: "3.8" - codecov: true - - os: ubuntu-latest - python-version: "3.9" - - os: ubuntu-latest - python-version: "3.10" - - os: ubuntu-latest - python-version: "3.11" - - os: ubuntu-latest - python-version: "3.12" + - os: ubuntu-latest + python-version: "3.8" + codecov: true + - os: ubuntu-latest + python-version: "3.9" + - os: ubuntu-latest + python-version: "3.10" + - os: ubuntu-latest + python-version: "3.11" + - os: ubuntu-latest + python-version: "3.12" defaults: run: shell: bash @@ -50,7 +50,7 @@ jobs: - name: Install Poetry uses: snok/install-poetry@v1 with: - virtualenvs.prefer-active-python: true + virtualenvs.prefer-active-python: true - name: ๐Ÿ”ฉ list Poetry settings run: poetry config --list @@ -61,9 +61,36 @@ jobs: - name: ๐Ÿ”Ž poetry run python run_test.py run: poetry run python run_test.py + # Enforce pre-commit hooks =========================== + - name: Get changed files + if: (matrix.codecov) + id: changed-files + uses: tj-actions/changed-files@v45 + with: + since_last_remote_commit: true + + - uses: actions/cache@v4 + if: (matrix.codecov) + id: cache-precommit + with: + path: ~/.cache/pre-commit + key: ${{ runner.os }}-precommit-hooks-v2-${{ hashFiles('**/.pre-commit-config.yaml') }} + + - name: Installing pre-commit hooks (cached) + if: (matrix.codecov) && (steps.cache-precommit.outputs.cache-hit != 'true') + run: poetry run pre-commit install --install-hooks + + - name: Run style checking via pre-commit + if: (matrix.codecov && steps.changed-files.outputs.all_changed_files) + run: | + echo "Changed files:" + echo "${{ steps.changed-files.outputs.all_changed_files }}" | tr ' ' '\n' + poetry run pre-commit run --files ${{ steps.changed-files.outputs.all_changed_files }} + + # ====================================================== - name: ๐Ÿ”ผ Upload coverage to Codecov if: (matrix.codecov) - uses: codecov/codecov-action@v1.0.13 + uses: codecov/codecov-action@v4 with: file: ./coverage.xml token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.gitignore b/.gitignore index ce2df748..8dd8801f 100755 --- a/.gitignore +++ b/.gitignore @@ -36,6 +36,7 @@ var/ *.egg-info/ .installed.cfg *.egg +.venv/ # PyInstaller # Usually these files are written by a python script from a template @@ -65,6 +66,8 @@ coverage.xml # Sphinx documentation docs/_build/ +docs/markdown_notebooks +docs/modules/ # PyBuilder target/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f96e05be..35444244 100755 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,20 +2,57 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: v4.5.0 hooks: + # Prevent committing to the master branch - id: no-commit-to-branch args: [--branch, master] + # Format yaml files - id: check-yaml + # Fix end-of-file issues - id: end-of-file-fixer + # Fix trailing whitespace - id: trailing-whitespace + # Prevent debug statements - id: debug-statements - id: fix-encoding-pragma - id: mixed-line-ending +# Code formatting - repo: https://github.com/ambv/black rev: 24.2.0 hooks: - id: black +# Further linting (e.g. module imported but not used) - repo: https://github.com/PyCQA/flake8 rev: 7.0.0 hooks: - id: flake8 -exclude: scripts/|docs/|tests/ +# Verify that requirements.txt is up to date with poetry dependencies every commit +- repo: https://github.com/python-poetry/poetry + rev: 1.8.3 + hooks: + - id: poetry-export + args: [ + "-f", + "requirements.txt", + "--output", + "requirements.txt", + "--with", + "dev", + "--with", + "test", + "--with", + "docs", + "-E", + "clipboard download express gel", + ] + files: 'requirements.txt' +# Remove metadata from jupyter notebooks. This will always be triggered when you commit a change in a notebook. +# Simply do `git add` and commit again. +- repo: local + hooks: + - id: nbstripout + name: nbstripout with keep-output + entry: | + python -m nbstripout --keep-output $@ + language: system + files: \.ipynb$ + exclude: tests/ diff --git a/.readthedocs.yml b/.readthedocs.yml deleted file mode 100755 index dfe1e086..00000000 --- a/.readthedocs.yml +++ /dev/null @@ -1,13 +0,0 @@ -version: 2 -build: - os: "ubuntu-22.04" - tools: - python: "3.11" -sphinx: - configuration: docs/conf.py -conda: - environment: docs/rtdenv.yml -python: - install: - - method: pip - path: . diff --git a/.vscode/extensions.json b/.vscode/extensions.json new file mode 100644 index 00000000..5e9f1f7a --- /dev/null +++ b/.vscode/extensions.json @@ -0,0 +1,8 @@ +{ + "recommendations": [ + "ms-python.black-formatter", + "ms-python.flake8", + "ms-python.python", + "ms-python.vscode-pylance", + ] +} diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 00000000..75aa0689 --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,15 @@ +{ + "files.exclude": { + "**/.git": true, + "**/.svn": true, + "**/.hg": true, + "**/CVS": true, + "**/.DS_Store": true, + "**/*.pyc": true, + "**/__pycache__": true + }, + // Set flake8 path + "flake8.path": [".venv/bin/flake8"], + "black-formatter.path": [".venv/bin/black"], + "python.defaultInterpreterPath": ".venv/bin/python", +} diff --git a/README.md b/README.md index 00c1a583..4872628c 100755 --- a/README.md +++ b/README.md @@ -4,21 +4,15 @@ | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------- | | [![Documentation Status](https://github.com/BjornFJohansson/pydna/actions/workflows/publish-docs.yml/badge.svg)](https://github.com/BjornFJohansson/pydna/actions/workflows/publish-docs.yml) | [![GitHub issues](https://img.shields.io/github/issues/BjornFJohansson/pydna.svg)](https://github.com/BjornFJohansson/pydna/issues) | [![Anaconda-Server Badge2](https://anaconda.org/bjornfjohansson/pydna/badges/license.svg)](https://anaconda.org/bjornfjohansson/pydna) | [![GitHub stars](https://img.shields.io/github/stars/BjornFJohansson/pydna.svg)](https://github.com/BjornFJohansson/pydna/stargazers) | + - -Planning genetic constructs with many parts and assembly steps, such as recombinant -metabolic pathways :petri_dish:, are often difficult to **properly** document as is evident from the poor -state of documentation in the scientific literature :radioactive:. - - -The pydna python package provide a human-readable formal descriptions of :dna: cloning and genetic assembly -strategies in Python :snake: which allow for simulation and verification. +Pydna is a python package that provides a human-readable formal descriptions of ๐Ÿงฌ cloning and genetic assembly strategies in Python ๐Ÿ for simulation and verification. Pydna can be used as [executable documentation](https://en.wikipedia.org/wiki/Literate_programming) for cloning. +Designing genetic constructs with many components and steps, like recombinant metabolic pathways ๐Ÿงซ, often makes accurate documentation difficult, as seen in the poor state of scientific literature โ˜ข๏ธ A cloning strategy expressed in pydna is **complete**, **unambiguous** and **stable**. - Pydna provides simulation of: - Primer design @@ -31,27 +25,26 @@ Pydna provides simulation of: - Golden gate assembly (in progress) -Virtually any sub-cloning experiment can be described in pydna, and its execution yield -the sequences of intermediate and final DNA molecules. +Virtually any sub-cloning experiment can be described in pydna, and its execution yield the sequences of intermediate and final DNA molecules. Pydna has been designed with the goal of being understandable for biologists with only some basic understanding of Python. Pydna can formalize planning and sharing of cloning strategies and is especially useful for complex or combinatorial DNA molecule constructions. -Start by looking at the [cookbook](https://github.com/BjornFJohansson/pydna/blob/master/docs/cookbook/cookbook.ipynb). + -Some simple examples can be found [here](https://github.com/MetabolicEngineeringGroupCBMA/pydna-examples#pydna-examples). +## Acknowledgement ๐Ÿค -For more elaborate use, look at some assembly strategies of D-xylose metabolic pathways [MetabolicEngineeringGroupCBMA/ypk-xylose-pathways](https://github.com/MetabolicEngineeringGroupCBMA/ypk-xylose-pathways#pereira-et-al-2016). +If you use pydna in your research, please reference the paper: -See below for documentation. - -![----]( http://bit.ly/coloredline) +Pereira, F., Azevedo, F., Carvalho, ร‚., Ribeiro, G. F., Budde, M. W., & Johansson, B. (2015). Pydna: a simulation and documentation tool for DNA assembly strategies using python. BMC Bioinformatics, 16(142), 142. [doi:10.1186/s12859-015-0544-x](https://doi.org/10.1186/s12859-015-0544-x) +## Documentation and usage ๐Ÿ“š +Full documentation of all modules and classes can be found at [https://bjornfjohansson.github.io/pydna](https://bjornfjohansson.github.io/pydna). -## Usage +To get started, we recommend you to have a look at the [example notebooks](docs/notebooks). Start by having a look at [Dseq](docs/notebooks/Dseq.ipynb), [Dseq_Features](docs/notebooks/Dseq_Features.ipynb) and [Importing_Seqs](docs/notebooks/Importing_Seqs.ipynb), which cover the basics of working with sequences. The rest of the notebooks cover how to use pydna for different cloning strategies, such as Gibson assembly, Restriction-Ligation, etc. Most pydna functionality is implemented as methods for the double stranded DNA sequence record classes Dseq and Dseqrecord, which are subclasses of the [Biopython](http://biopython.org/wiki/Main_Page) @@ -59,161 +52,282 @@ classes Dseq and Dseqrecord, which are subclasses of the [Biopython](http://biop These classes make PCR primer design, PCR simulation and cut-and-paste cloning very simple: -[![example](https://raw.githubusercontent.com/BjornFJohansson/pydna/master/docs/example.png)](https://github.com/BjornFJohansson/pydna/blob/master/docs/example.ipynb) - -As the example above shows, pydna keeps track of sticky ends and features. - +> **NOTE**: You can run this example in [this notebook](docs/notebooks/readme_example.ipynb) -Pydna can be very compact. The eleven lines of Python below simulates the construction of a recombinant plasmid. -DNA sequences are downloaded from Genbank by accession numbers that are guaranteed to be stable over time. - - from pydna.genbank import Genbank - gb = Genbank("myself@email.com") # Tell Genbank who you are! - gene = gb.nucleotide("X06997") # Kluyveromyces lactis LAC12 gene for lactose permease. - from pydna.parsers import parse_primers - primer_f,primer_r = parse_primers(''' >760_KlLAC12_rv (20-mer) - ttaaacagattctgcctctg +```python +from pydna.dseqrecord import Dseqrecord +# Let's create a DNA sequence record, and add a feature to it +dsr = Dseqrecord("ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT") +dsr.add_feature(x=0, y=60,type="gene", label="my_gene") # We add a feature to highlight the sequence as a gene +dsr.figure() +``` - >759_KlLAC12_fw (19-mer) - aaatggcagatcattcgag ''') - from pydna.amplify import pcr - pcr_prod = pcr(primer_f,primer_r, gene) - vector = gb.nucleotide("AJ001614") # pCAPs cloning vector - from Bio.Restriction import EcoRV - lin_vector = vector.linearize(EcoRV) - rec_vec = ( lin_vector + pcr_prod ).looped() +
+Dseqrecord(-60)
+ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT
+TACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTA
+
-Another use case for pydna in the automatic generation of [sub cloning](http://en.wikipedia.org/wiki/Subcloning) examples for teaching purposes. -Feedback & suggestions are very welcome! Please post a message in the [google group](https://groups.google.com/d/forum/pydna) for pydna if you need help or have problems, questions or comments :sos:. +```python +# This is how it would look as a genbank file +print(dsr.format("genbank")) +``` -![----]( http://bit.ly/coloredline) + LOCUS name 60 bp DNA linear UNK 01-JAN-1980 + DEFINITION description. + ACCESSION id + VERSION id + KEYWORDS . + SOURCE . + ORGANISM . + . + FEATURES Location/Qualifiers + misc 1..60 + /type="gene" + /label="my_gene" + ORIGIN + 1 atgcaaacag taatgatgga tgacattcaa agcactgatt ctattgctga aaaagataat + // + + + +```python +# Now let's design primers to amplify it +from pydna.design import primer_design +# limit is the minimum length of the primer, target_tm is the desired melting temperature of the primer +amplicon = primer_design(dsr, limit=13, target_tm=55) +# Let's print the primers, and a figure that shows where they align with the template sequence +print("forward primer:", amplicon.forward_primer.seq) +print("reverse primer:", amplicon.reverse_primer.seq) +amplicon.figure() +``` +``` +forward primer: ATGCAAACAGTAATGATGGA +reverse primer: ATTATCTTTTTCAGCAATAGAATCA -## Who is using pydna? -Taylor, L. J., & Strebel, K. (2017). -Pyviko: an automated Python tool to design gene knockouts in complex viruses with overlapping genes. -BMC Microbiology, 17(1), 12. -[PubMed](https://www.ncbi.nlm.nih.gov/pubmed/28061810) -Wang, Y., Xue, H., Pourcel, C., Du, Y., & Gautheret, D. (2021). -2-kupl: mapping-free variant detection from DNA-seq data of matched samples. -In Cold Spring Harbor Laboratory (p. 2021.01.17.427048). [DOI](https://doi.org/10.1101/2021.01.17.427048) -[PubMed](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8180056) +5ATGCAAACAGTAATGATGGA...TGATTCTATTGCTGAAAAAGATAAT3 + ||||||||||||||||||||||||| + 3ACTAAGATAACGACTTTTTCTATTA5 +5ATGCAAACAGTAATGATGGA3 + |||||||||||||||||||| +3TACGTTTGTCATTACTACCT...ACTAAGATAACGACTTTTTCTATTA5 +``` -[An Automated Protein Synthesis Pipeline with Transcriptic and Snakemake](http://blog.booleanbiotech.com/transcriptic_protein_synthesis_pipeline.html) -and other projects on [github](https://github.com/BjornFJohansson/pydna/network/dependents?package_id=UGFja2FnZS01MjQ2MjYzNQ%3D%3D) -![----]( http://bit.ly/coloredline) +```python +# Let's say we don't want to just amplify it, but we want to add restriction sites to it! +from pydna.amplify import pcr +# We add the restriction sites to the primers +forward_primer = "ccccGGATCC" + amplicon.forward_primer +reverse_primer = "ttttGGATCC" + amplicon.reverse_primer -There is an open access paper in BMC Bioinformatics describing pydna: +# We do the PCR +pcr_product = pcr(forward_primer, reverse_primer, dsr) +# The PCR product is of class `Amplicon`, a subclass of `Dseqrecord`. +# When doing a figure, it shows where primers anneal. +pcr_product.figure() +``` -[![abstr](https://raw.githubusercontent.com/bjornFJohansson/pydna/master/docs/pics/BMC_resized.png)](http://www.biomedcentral.com/1471-2105/16/142/abstract) +``` + 5ATGCAAACAGTAATGATGGA...TGATTCTATTGCTGAAAAAGATAAT3 + ||||||||||||||||||||||||| + 3ACTAAGATAACGACTTTTTCTATTACCTAGGtttt5 +5ccccGGATCCATGCAAACAGTAATGATGGA3 + |||||||||||||||||||| + 3TACGTTTGTCATTACTACCT...ACTAAGATAACGACTTTTTCTATTA5 +``` -Please reference the above paper: +```python +# If we want to see the sequence more clearly, we can turn it into a `Dseqrecord` +pcr_product = Dseqrecord(pcr_product) +pcr_product.figure() +``` -Pereira, F., Azevedo, F., Carvalho, ร‚., Ribeiro, G. F., Budde, M. W., & Johansson, B. (2015). Pydna: a simulation and documentation tool for DNA assembly strategies using python. BMC Bioinformatics, 16(142), 142. +
+Dseqrecord(-80)
+ccccGGATCCATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATGGATCCaaaa
+ggggCCTAGGTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAGGtttt
+
+ + +```python +from Bio.Restriction import BamHI # cuts GGATCC +# a, payload, c are the cut fragments +a, payload, c = pcr_product.cut (BamHI) +print(a.figure()) +print() +print (payload.figure()) +print() +print(c.figure()) +``` -When using pydna. +
+Dseqrecord(-9)
+ccccG
+ggggCCTAG
 
-![----]( http://bit.ly/coloredline)
+Dseqrecord(-70)
+GATCCATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATG
+    GTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAG
 
-## Documentation :page_with_curl:
+Dseqrecord(-9)
+GATCCaaaa
+    Gtttt
+
-Documentation can be found [here](https://bjornfjohansson.github.io/pydna). It is built using [Sphinx](http://www.sphinx-doc.org/) from [docstrings](https://www.python.org/dev/peps/pep-0257/) -using a GitHub [action](https://github.com/BjornFJohansson/pydna/actions/workflows/publish-docs.yml). -The [numpy](www.numpy.org) [docstring format](https://numpy.org/doc/stable/dev/howto-docs.html#docstring-intro) is used. +```python +# We create a circular vector to insert the amplicon into +vector = Dseqrecord("aatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct", circular=True, name="vect") +vector.figure() +``` +``` +Dseqrecord(o50) +aatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct +ttacaaaaagggaGGGCCCgttttaTCTAGAacgatacgtagtagctaga +``` +```python +from Bio.Restriction import BglII # cuts AGATCT +linear_vector_bgl = vector.cut(BglII)[0] # Linearize the vector at BglII (produces only one fragment) -![----]( http://bit.ly/coloredline) +# Ligate the fragment of interest to the vector, and call looped() to circularize it +# synced is used to place the origin coordinate (0) in the same place for rec_vector and vector +rec_vector= (linear_vector_bgl + payload).looped().synced(vector) +rec_vector.figure() -## Installation using pip +``` -Pip is included in recent Python versions and is the -officially [recommended](http://python-packaging-user-guide.readthedocs.org/en/latest) tool. +
+Dseqrecord(o116)
+aatgtttttccctCCCGGGcaaaatAGATCCATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATGGATCTtgctatgcatcatcgatct
+ttacaaaaagggaGGGCCCgttttaTCTAGGTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAGAacgatacgtagtagctaga
+
-Pip installs the minimal installation requirements automatically, but not the optional requirements (see below). -The --pre switch to get the latest version of pydna. - pip install --pre --upgrade pydna +```python +# Let's simulate a Gibson assembly +from pydna.assembly import Assembly -for optional functionality do: +fragments = [ + Dseqrecord('aatgtttttccctCACTACGtgctatgcatcat', name="fragment_A"), + Dseqrecord('tgctatgcatcatCTATGGAcactctaataatg', name="fragment_B"), + Dseqrecord('cactctaataatgTTACATAaatgtttttccct', name="fragment_C"), +] - pip install --pre --upgrade pydna[clipboard,download,express,gel] +# limit is the min. homology length between fragments in the assembly +asm = Assembly(fragments, limit=10) -Remove options inside the square brackets as required, but be sure not to leave spaces as pip will not recognize the options. See below under "Optional dependencies". +# From the assembly object, which can generate all possible products, get a circular +product, *rest = asm.assemble_circular() -### Windows: +# We can print a figure that shows the overlaps between fragments +product.figure() -You should be able to pip install pydna from the Windows terminal as biopython now can be installed with pip as well. +``` + -|fragment_A|13 + | \/ + | /\ + | 13|fragment_B|13 + | \/ + | /\ + | 13|fragment_C|13 + | \/ + | /\ + | 13- + | | + -------------------------------------------- + +```python +# Or show the final sequence: +Dseqrecord(product).figure() - C:\> pip install pydna +``` -By default python and pip are not on the PATH. You can re-install Python and select this option during installation, or give the full path for pip. Try something like this, depending on where your copy of Python is installed: +``` +Dseqrecord(o60) +aatgtttttccctCACTACGtgctatgcatcatCTATGGAcactctaataatgTTACATA +ttacaaaaagggaGTGATGCacgatacgtagtaGATACCTgtgagattattacAATGTAT +``` - C:\Python37\Scripts\pip install pydna -![----]( http://bit.ly/coloredline) +As the example above shows, pydna keeps track of sticky ends and features. -## Source Code +Pydna can be very compact. The eleven lines of Python below simulates the construction of a recombinant plasmid. +DNA sequences are downloaded from Genbank by accession numbers that are guaranteed to be stable over time. -Pydna is developed on [Github](https://github.com/BjornFJohansson/pydna) :octocat:. -I am happy to collaborate on new features or bugfixes. +```python +from pydna.genbank import Genbank +gb = Genbank("myself@email.com") # Tell Genbank who you are! +gene = gb.nucleotide("X06997") # Kluyveromyces lactis LAC12 gene for lactose permease. +from pydna.parsers import parse_primers +primer_f,primer_r = parse_primers(''' >760_KlLAC12_rv (20-mer) + ttaaacagattctgcctctg + + >759_KlLAC12_fw (19-mer) + aaatggcagatcattcgag ''') + +from pydna.amplify import pcr +pcr_prod = pcr(primer_f,primer_r, gene) +vector = gb.nucleotide("AJ001614") # pCAPs cloning vector +from Bio.Restriction import EcoRV +lin_vector = vector.linearize(EcoRV) +rec_vec = ( lin_vector + pcr_prod ).looped() +``` -## Minimal installation dependencies +## Installation ๐Ÿ“ฆ -The list below is the minimal requirements for installing pydna. -Biopython and pydivsufsort has c-extensions, but the other modules are pure python. + -- [Python 3.8, 3.9, 3.10, 3.11 or 3.12](http://www.python.org) -- [appdirs](https://pypi.python.org/pypi/appdirs) -- [biopython](http://pypi.python.org/pypi/biopython) -- [networkx](http://pypi.python.org/pypi/networkx) -- [prettytable](https://pypi.python.org/pypi/PrettyTable) -- [pydivsufsort](https://pypi.python.org/pypi/pydivsufsort) -- [pyfiglet](https://pypi.python.org/pypi/pyfiglet) +By default, pydna is installed with minimal dependencies, but there are optional dependencies for additional functionality. -Pydna is importable even without pyfiglet. -## Optional dependencies +### Optional dependencies +
+Click here to see optional dependencies -These can be installed `pip install pydna[clipboard,gel,download,express]` -where `[clipboard,gel,download,express]` is the list of options available. Any -combination of the words inside the square brackets are allowed, but no white space. + +_________________ -### `clipboard` +**clipboard** Enables the `pydna.dseqrecord.Dseqrecord.copy_gb_to_clipboard()` and `pydna.dseqrecord.Dseqrecord.copy_fasta_to_clipboard()` These methods will put a copy the sequence on the clipboard in either Genbank (gb) or fasta format. -| Dependency | Function in pydna | -| --------------------------------------------------- | -------------------------------------- | -| [pyperclip](https://pypi.python.org/pypi/pyperclip) | copy sequence to clipboard | +| Dependency | Function in pydna | +| --------------------------------------------------- | -------------------------- | +| [pyperclip](https://pypi.python.org/pypi/pyperclip) | copy sequence to clipboard | -### `download` +_________________ + +**download** Pyparsing enables the `pydna.genbankfixer.gbtext_clean()` function that can automatically correct malformed sequence files in Genbank format. These are often found online, so this option also installs requests to enable the `pydna.genbankfixer.download.download_text()` function which can be used to get cleaned up text from a URL. -| Dependency | Function in pydna | -| --------------------------------------------------- | ------------------------------------------------------ | -| [pyparsing](https://pypi.python.org/pypi/pyparsing) | fix corrupt Genbank files with pydna.genbankfixer | -| [requests](https://pypi.org/project/requests) | download sequences with pydna.download | +| Dependency | Function in pydna | +| --------------------------------------------------- | ------------------------------------------------- | +| [pyparsing](https://pypi.python.org/pypi/pyparsing) | fix corrupt Genbank files with pydna.genbankfixer | +| [requests](https://pypi.org/project/requests) | download sequences with pydna.download | + +_________________ -### `express` +**express** This option enables the `pydna.utils.cai()` function and the `cai()` method available from subclasses of `pydna.seqrecord.SeqRecord`, such as @@ -221,131 +335,204 @@ available from subclasses of `pydna.seqrecord.SeqRecord`, such as | [cai2](https://pypi.python.org/pypi/cai2) | codon adaptation index calculations in several modules | -### `gel` +_________________ + +**gel** Scipy, matplotlib and pillow (PIL) enable the generation of gel images. Numpy is also needed, but usually installed as a dependency of biopython. -| Dependency | Function in pydna | -| --------------------------------------------------- | ------------------------------------------------------ | -| [scipy](https://www.scipy.org) | gel simulation with pydna.gel | -| [matplotlib](http://matplotlib.org) | โ€œ | -| [pillow](https://github.com/python-pillow/Pillow) | โ€œ | +| Dependency | Function in pydna | +| ------------------------------------------------- | ----------------------------- | +| [scipy](https://www.scipy.org) | gel simulation with pydna.gel | +| [matplotlib](http://matplotlib.org) | โ€œ | +| [pillow](https://github.com/python-pillow/Pillow) | โ€œ | +_________________ -## Requirements for running tests, coverage and profiling +
-- [pytest](https://pypi.org/project/pytest) -- [pytest-cov](https://pypi.org/project/pytest-cov) -- [pytest-doctestplus](https://pypi.org/project/pytest-doctestplus) -- [pytest-profiling](https://pypi.org/project/pytest-profiling) -- [coverage](https://pypi.org/project/coverage) -- [nbval](https://pypi.org/project/nbval) -- [requests-mock](https://pypi.org/project/requests-mock) +### Installing with pip ๐Ÿ -for instance by `pip install pytest pytest-cov pytest-doctestplus pytest-profiling coverage nbval requests-mock` +```bash +# use the `--pre` flag to get the latest version of pydna. +pip install --pre --upgrade pydna -Running the entire test suite also require: +# to install the optional dependencies, you can use the following command: +pip install --pre --upgrade pydna[clipboard,download,express,gel] +``` -- scipy -- matplotlib -- pillow -- pyparsing -- requests -- cai2 +Remove options inside the square brackets as required, but be sure not to leave spaces as pip will not recognize the options. See below under "Optional dependencies". -That can be installed by `pip install pydna[clipboard,gel,download,express]` +### Installing with poetry ๐Ÿง™โ€โ™‚๏ธ -or by `pip install pyparsing requests cai2 scipy matplotlib pillow` +If your project uses [poetry](https://python-poetry.org/) to manage dependencies, you can install pydna with the following commands: +```bash +# Basic installation +poetry add pydna +# With optional dependencies (ommit the options you don't want) +poetry add pydna --extras "clipboard download express gel" -![----]( http://bit.ly/coloredline) +# If you already have it installed and you want to add or remove optional +# dependencies, you have to uninstall and install again +poetry remove pydna +poetry add pydna --extras "express gel" +``` -## Contributing + -Please direct pull requests towards the `develop` branch. +## Contributing and feedback ๐Ÿ› ๏ธ +Feedback & suggestions are very welcome! Please create an issue with your question, comment or suggestion. Please include the version of pydna you are using and code to reproduce the issue if possible. -### Local development +If you don't have a github account, you can get in touch through the [google group](https://groups.google.com/d/forum/pydna) for pydna. -1. Use [Poetry](https://pypi.org/project/poetry) to install dependencies and activate virtual environment. +Below are the instructions for developers who want to contribute to pydna. Please direct pull requests towards the `dev_bjorn` branch. - ```bash - # If you want the virtual environment to be created in this folder - poetry config virtualenvs.in-project true +### Fork the repository and set up a dev branch ๐Ÿด - # Install dependencies (extras are required for tests to pass) - poetry install --all-extras +Fork the entire repository (not just the `master` branch by unticking the "Copy the `master` branch only" box) - # Activate virtual environment - poetry shell - ``` +Fork repository -2. Make your changes. -3. Add the necessary tests in `tests/`. -4. Run the tests from the root directory with `python run_test.py`. +Create your branch starting from `dev_bjorn`, and if your changes are related to an issue, call the branch `issue_`. -#### Building the documentation locally +```bash +# Clone the repository +git clone https://github.com//pydna.git -Below the commands to run a local sphinx server that auto-updated when files are changed. +# Change to the repository directory +cd pydna + +# Go to the dev_bjorn branch +git checkout -b dev_bjorn + +# Pull the current version of dev_bjorn +git pull origin dev_bjorn +# Create your own branch +git checkout -b issue_ ``` -# Install docs dependency group -poetry install --with docs -# Start the sphinx server to see docs live by default at http://127.0.0.1:8000/ -sphinx-autobuild --watch src/ docs docs/_build/html +### Local development ๐Ÿ’ป + +#### Preferred method (using `poetry`) ๐Ÿง™โ€โ™‚๏ธ + +This is the preferred method to develop on pydna, so if you plan to contribute regularly, it's worth taking this route. If you +encounter any issues setting up the dev environment, create an issue on GitHub and we will be able to help. + +Use [Poetry](https://python-poetry.org/docs/#installation) to install dependencies and activate virtual environment. This is necessary +if you want to edit the project dependencies. Install poetry using [pipx](https://github.com/pypa/pipx) following poetry's installation instructions, do not install it +in the system python or the project environment. +```bash +# If you want the virtual environment to be created in this folder +# (this is now the default, see `poetry.toml`) +poetry config virtualenvs.in-project true + +# Install dependencies (extras are required for tests to pass) +poetry install --all-extras + +# Activate virtual environment +poetry shell + +# Install pre-commit hooks +poetry run pre-commit install ``` -## Automatic testing & Release process +#### Alternative method (using `pip`) ๐Ÿ -See the [releases](https://github.com/BjornFJohansson/pydna/releases) for changes and releases. +Use this for a small contribution or if you don't manage to set up the dev environment. -There are two github actions for this package: +```bash +# Create a new virtual environment +python -m venv .venv -- `.github/workflows/pydna_test_and_coverage_workflow.yml` -- `.github/workflows/pydna_pypi_build_workflow.yml` +# Activate the virtual environment +source .venv/bin/activate -The test_and_coverage workflow is triggered on all pushed commits for all branches except the `master` branch. This workflow run tests, doctests and a series of Jupyter notebooks using pytest on Linux, Windows and macOS with all -supported python versions. +# Install all dependencies (library deps + dev and test requirements) +pip install -r requirements.txt -The build workflow builds a PyPI packages using poetry. This workflow is triggered by publishing a Github release manually from the Github web interface. +# Install the project as editable dependency +pip install -e . -![----]( http://bit.ly/coloredline) +# Install the pre-commit hooks +pre-commit install +``` + +#### Contributing code ๐Ÿ’ป + +1. Make your changes. +2. Add the necessary tests in `tests/`. +3. Run the tests from the root directory with `python run_test.py`. + > **TIP:** You can run a particular test file with `pytest -vs test_file.py` (`-v` for verbose and `-s` to see print statements in the test). If you want to run just a single test, you can use `pytest -vs -k test_name`, where `test_name` is the name of the test function. +4. Before committing, install `pre-commit` hooks if you haven't by running `pre-commit install`. `pre-commit` should be available in the environment regardless of the method you use to set up the dev environment. + > **TIP:** The hooks are a series of checks that will be run before you commit your code. If any of the checks fail, the commit will not be allowed. Some of them auto-fix the code (e.g., `black` formatting), so you can simply do `git add .` and commit again. Others like `flake8` will prevent the commit to happen until the code is compliant. For instance, if you import a module in a file and not use it, `flake8` will complain. For a full list of checks, see `.pre-commit-config.yaml`. +5. Push the changes to your fork + +### Creating a PR ๐Ÿ”— + + * From your fork, make a PR towards the branch `dev_bjorn` in the original repository. + * Mention the issue number in the PR description (e.g., `Closes #123`). + * Remember to click the "Allow edits from maintainers" checkbox so that we can make some changes to the PR if necessary. -## Building a PyPI package with [Poetry](https://pypi.org/project/poetry) +### Continuous integration ๐Ÿค– -1. Commit changes to git -2. Tag the commit according to the [Semantic Versioning](https://semver.org) format, for example "v2.0.1a3". Do not forget the "v" or poetry will not recognize the tag. +The test_and_coverage workflow is triggered on all pushed commits for all branches except the `master` branch. This workflow run tests, doctests and a series of Jupyter notebooks using pytest on Linux, Windows and macOS with all +supported python versions. - git tag v2.0.1a3 +### Building the documentation locally ๐Ÿ“š -3. Pydna uses the poetry [poetry-dynamic-versioning](https://pypi.org/project/poetry-dynamic-versioning) plugin. +Documentation is built using [Sphinx](http://www.sphinx-doc.org/) from [docstrings](https://www.python.org/dev/peps/pep-0257/) +using a GitHub [action](https://github.com/BjornFJohansson/pydna/actions/workflows/publish-docs.yml). +The [numpy](https://www.numpy.org) [docstring format](https://numpy.org/doc/stable/dev/howto-docs.html#docstring-intro) is used. - poetry dynamic-versioning # This sets the version number in the source files +Below the commands to run a local sphinx server that auto-updated when files are changed. -4. Verify the version +```bash +# Install docs dependency group +poetry install --with docs - poetry version +# Start the sphinx server to see docs live by default at http://127.0.0.1:8000/ +sphinx-autobuild --watch src/ docs docs/_build/html -5. Build package: +``` - poetry build # run this command in the root directory where the pyproject.toml file is located +More info about how to contribute to the documentation can be found [here](docs/README.md) -6. Verify the filename of the files in the dist/ folder, they should match +## Release process ๐Ÿš€ -7. Publish to pypi +See the [releases](https://github.com/BjornFJohansson/pydna/releases) for changes and releases. - poetry publish +The build workflow builds a PyPI packages using poetry. This workflow is triggered by publishing a Github release manually from the Github web interface. ![----]( http://bit.ly/coloredline) -## History +## History ๐Ÿ“œ Pydna was made public in 2012 on [Google code](https://code.google.com/archive/p/pydna). :microbe: :portugal: + +## Who is using pydna? ๐Ÿงช + +Taylor, L. J., & Strebel, K. (2017). +Pyviko: an automated Python tool to design gene knockouts in complex viruses with overlapping genes. +BMC Microbiology, 17(1), 12. +[PubMed](https://www.ncbi.nlm.nih.gov/pubmed/28061810) + +Wang, Y., Xue, H., Pourcel, C., Du, Y., & Gautheret, D. (2021). +2-kupl: mapping-free variant detection from DNA-seq data of matched samples. +In Cold Spring Harbor Laboratory (p. 2021.01.17.427048). [DOI](https://doi.org/10.1101/2021.01.17.427048) +[PubMed](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8180056) + +[ShareYourCloning](https://shareyourcloning.org), a web application for designing and documenting DNA cloning strategies. + +[An Automated Protein Synthesis Pipeline with Transcriptic and Snakemake](http://blog.booleanbiotech.com/transcriptic_protein_synthesis_pipeline.html) + +and other projects on [github](https://github.com/BjornFJohansson/pydna/network/dependents?package_id=UGFja2FnZS01MjQ2MjYzNQ%3D%3D) diff --git a/dependabot.yml b/dependabot.yml index 183d1da4..3da1856a 100644 --- a/dependabot.yml +++ b/dependabot.yml @@ -8,4 +8,4 @@ updates: - package-ecosystem: "python" # See documentation for possible values directory: "/" # Location of package manifests schedule: - interval: "daily" + interval: "monthly" diff --git a/docs/BUILD_HTML.sh b/docs/BUILD_HTML.sh deleted file mode 100755 index d4471847..00000000 --- a/docs/BUILD_HTML.sh +++ /dev/null @@ -1,5 +0,0 @@ -#!/bin/bash - -rm -r _build - -sphinx-build . _build/html&&xdg-open _build/html/index.html diff --git a/docs/BUILD_RST_FILES.sh b/docs/BUILD_RST_FILES.sh deleted file mode 100755 index 77e5c781..00000000 --- a/docs/BUILD_RST_FILES.sh +++ /dev/null @@ -1,7 +0,0 @@ -#!/bin/bash - -sphinx-apidoc -f -o . ../src/pydna - -echo `basename $0` - -read diff --git a/docs/README.md b/docs/README.md new file mode 100644 index 00000000..fa6f252b --- /dev/null +++ b/docs/README.md @@ -0,0 +1,91 @@ +# Documentation + +Documentation is built using [Sphinx](http://www.sphinx-doc.org/) from [docstrings](https://www.python.org/dev/peps/pep-0257/) +using a GitHub [action](https://github.com/BjornFJohansson/pydna/actions/workflows/publish-docs.yml). +The [numpy](www.numpy.org) [docstring format](https://numpy.org/doc/stable/dev/howto-docs.html#docstring-intro) is used. + +Below the commands to run a local sphinx server that auto-updated when files are changed. + +```bash +# Install docs dependency group +poetry install --with docs + +# Start the sphinx server to see docs live by default at http://127.0.0.1:8000/ +sphinx-autobuild --watch src/ docs docs/_build/html +``` + +When you run the sphinx server live, it not always updates things if you make relevant changes (e.g. adding new pages, +changing the css, etc.). To force an update, you can run the command below which deletes the existing build folder and +then rebuilds it. + +```bash +rm -rf docs/_build/html && sphinx-autobuild --watch src/ docs docs/_build/html +``` + +## Adding new sections to the documentation + +You can add new sections (equivalent to "Getting started" or "Example gallery") by creating a new `.rst` or `.md` file in the `docs` folder, and then adding a reference to it in the `.. toctree::` directive in the `docs/index.rst` file. + +## Auto-generated files + +The script `autogen_docs.sh` is run in the github action before creating the docs. If you want to reproduce locally, you +should run it from the `docs` folder + +```bash +cd docs +bash autogen_docs.sh +``` + + +* It converts all notebooks in the `docs/notebooks` folder to `.md` in `docs/markdown_notebooks` (excluded from git) +* It creates all files in `docs/modules`, which are used to generate the API reference. For instance, it will create + a `docs/modules/index.rst` file that starts like this: + + ```rst + Modules + ======= + + .. toctree:: + :maxdepth: 1 + :caption: Modules: + + pydna + pydna__pretty + ``` + And then individual files for each module and submodule, e.g. `docs/modules/pydna.rst`. + + ``` + pydna + ===== + + .. automodule:: pydna + :members: + :undoc-members: + :show-inheritance: + ``` + +## Text imported from README.md + +To avoid having to maintain the same text in multiple files, fragments of the `README.md` are imported using the directive +`include`. For instance, in the `installation.rst` file, you can find the code below. What this does is to import the text of the README.md file between the start and end markers, which are markdown comments and therefore not rendered. + +```rst +.. include:: ../README.md + :parser: myst_parser.sphinx_ + :start-after: + :end-before: +``` + +## Including notebooks in the getting started and example sections + +You can see the example of how to do this in the `getting_started.md` file. Note that the notebooks present in the `docs/notebooks` folder will automatically be converted to markdown in the `docs/markdown_notebooks` folder. So if you have a notebook `docs/notebooks/Example_Gibson.ipynb`, it will be converted to `docs/markdown_notebooks/Example_Gibson.md` and you can use that file path to make a link to it. + +## Custom CSS + +For now, I have used css to make notebook outputs that are too long scrollable, and to add a small label `python code` to the code cells and `output` to the output cells. + +For further customization, you can edit the `custom.css` file. + +## Misc + +Other changes, such as changing the favicon, the css etc., can be made in the `conf.py` file. See the [sphinx docs](https://www.sphinx-doc.org/en/master/usage/configuration.html) and the [sphinx-rtd-theme](https://sphinx-rtd-theme.readthedocs.io/en/stable/configuring.html) docs for more information. diff --git a/docs/_config.yml b/docs/_config.yml deleted file mode 100644 index fff4ab92..00000000 --- a/docs/_config.yml +++ /dev/null @@ -1 +0,0 @@ -theme: jekyll-theme-minimal diff --git a/docs/pics/BMC.png b/docs/_static/BMC.png similarity index 100% rename from docs/pics/BMC.png rename to docs/_static/BMC.png diff --git a/docs/pics/BMC_resized.png b/docs/_static/BMC_resized.png similarity index 100% rename from docs/pics/BMC_resized.png rename to docs/_static/BMC_resized.png diff --git a/docs/pics/BMC_resized_old.png b/docs/_static/BMC_resized_old.png similarity index 100% rename from docs/pics/BMC_resized_old.png rename to docs/_static/BMC_resized_old.png diff --git a/docs/_static/assembly_fragment_slide_circular.png b/docs/_static/assembly_fragment_slide_circular.png new file mode 100644 index 00000000..fca398b6 Binary files /dev/null and b/docs/_static/assembly_fragment_slide_circular.png differ diff --git a/docs/_static/assembly_fragment_slide_linear.png b/docs/_static/assembly_fragment_slide_linear.png new file mode 100644 index 00000000..a0091a08 Binary files /dev/null and b/docs/_static/assembly_fragment_slide_linear.png differ diff --git a/docs/_static/create-fork.png b/docs/_static/create-fork.png new file mode 100644 index 00000000..fe045c35 Binary files /dev/null and b/docs/_static/create-fork.png differ diff --git a/docs/_static/custom.css b/docs/_static/custom.css new file mode 100644 index 00000000..df81fb92 --- /dev/null +++ b/docs/_static/custom.css @@ -0,0 +1,48 @@ +/* Make output cells that are too long scrollable */ +.highlight-none { + position: relative; + margin-top: 20px; +} + +/* Add a label to the top of the output cell */ +.highlight-none::before { + content: "output"; + position: absolute; + top: 0px; + left: 0; + background-color: #f0f0f0; + color: #333; + padding: 2px 8px; + font-size: 12px; + border-radius: 3px 3px 0 0; + z-index: 1; +} + +div.highlight-none pre { + max-height: 300px; + overflow-y: auto; +} + +/* Add same label to highlight-python cells */ +.highlight-python { + position: relative; +} + +/* Add a label to the top of the output cell */ +.highlight-python::before { + content: "python code"; + position: absolute; + top: 0px; + left: 0; + background-color: #f0f0f0; + color: #333; + padding: 2px 8px; + font-size: 12px; + border-radius: 3px 3px 0 0; + z-index: 1; +} + +/* Add padding to the top to fit the label */ +.rst-content div[class^="highlight"] pre { + padding-top: 25px; +} diff --git a/docs/_static/favicon.ico b/docs/_static/favicon.ico new file mode 100644 index 00000000..db139baf Binary files /dev/null and b/docs/_static/favicon.ico differ diff --git a/docs/pics/gel.png b/docs/_static/gel.png similarity index 100% rename from docs/pics/gel.png rename to docs/_static/gel.png diff --git a/docs/pics/pydna-web.png b/docs/_static/pydna-web.png similarity index 100% rename from docs/pics/pydna-web.png rename to docs/_static/pydna-web.png diff --git a/docs/pics/pydna.png b/docs/_static/pydna.png similarity index 100% rename from docs/pics/pydna.png rename to docs/_static/pydna.png diff --git a/docs/pics/pydna.resized.png b/docs/_static/pydna.resized.png similarity index 100% rename from docs/pics/pydna.resized.png rename to docs/_static/pydna.resized.png diff --git a/docs/pics/pydna240x240.png b/docs/_static/pydna240x240.png similarity index 100% rename from docs/pics/pydna240x240.png rename to docs/_static/pydna240x240.png diff --git a/docs/pics/pydna_512x512.png b/docs/_static/pydna_512x512.png similarity index 100% rename from docs/pics/pydna_512x512.png rename to docs/_static/pydna_512x512.png diff --git a/docs/pics/pydna_512x512_trsp.png b/docs/_static/pydna_512x512_trsp.png similarity index 100% rename from docs/pics/pydna_512x512_trsp.png rename to docs/_static/pydna_512x512_trsp.png diff --git a/docs/pics/pydna_transparent.png b/docs/_static/pydna_transparent.png similarity index 100% rename from docs/pics/pydna_transparent.png rename to docs/_static/pydna_transparent.png diff --git a/docs/pics/snake.png b/docs/_static/snake.png similarity index 100% rename from docs/pics/snake.png rename to docs/_static/snake.png diff --git a/docs/autogen_docs.sh b/docs/autogen_docs.sh new file mode 100644 index 00000000..da5a6813 --- /dev/null +++ b/docs/autogen_docs.sh @@ -0,0 +1,52 @@ +#!/bin/bash + +# Exit on error +set -e + +# Loop through all notebooks in the markdown_notebooks directory +for notebook in notebooks/*.ipynb; do + # Convert each notebook to markdown + python -m nbconvert $notebook --to markdown --output-dir markdown_notebooks +done + +# Get module names +all_modules=$(python -c "import pydna; import pkgutil; [print(name) for _, name, _ in pkgutil.iter_modules(pydna.__path__)]") + +# If the modules folder does not exist, create it +mkdir -p modules + +# Create the root pydna.rst file +echo "Creating pydna.rst" +echo "pydna" > modules/pydna.rst +echo "=====" >> modules/pydna.rst +echo "" >> modules/pydna.rst +echo ".. automodule:: pydna" >> modules/pydna.rst +echo " :members:" >> modules/pydna.rst +echo " :undoc-members:" >> modules/pydna.rst +echo " :show-inheritance:" >> modules/pydna.rst + +# Create the modules/index.rst file +echo "Creating modules/index.rst" +echo "Modules" > modules/index.rst +echo "=======" >> modules/index.rst +echo "" >> modules/index.rst +echo ".. toctree::" >> modules/index.rst +echo " :maxdepth: 1" >> modules/index.rst +echo " :caption: Modules:" >> modules/index.rst +echo "" >> modules/index.rst +echo " pydna" >> modules/index.rst + +# For each module create a rst file in ./modules +for module in $all_modules; do + echo "Creating pydna_$module.rst" + echo "pydna.$module" > modules/pydna_$module.rst + echo "==========" >> modules/pydna_$module.rst + echo "" >> modules/pydna_$module.rst + echo ".. automodule:: pydna.$module" >> modules/pydna_$module.rst + echo " :members:" >> modules/pydna_$module.rst + echo " :undoc-members:" >> modules/pydna_$module.rst + echo " :show-inheritance:" >> modules/pydna_$module.rst + + # Add the module to the modules/index.rst file + echo " pydna_$module" >> modules/index.rst +done diff --git a/docs/conf.py b/docs/conf.py index 945a0996..c2d687c5 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -7,14 +7,16 @@ # -- Project information ----------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information +import os +import sys +from importlib.metadata import version + project = "pydna" -copyright = "2022, Bjรถrn F. Johansson" +copyright = "2024, Bjรถrn F. Johansson" author = "Bjรถrn F. Johansson" -import sys, os - +sys.path.insert(0, os.path.abspath("../src/pydna")) # contents of docs/conf.py -from importlib.metadata import version release = version("pydna") # for example take major/minor @@ -25,7 +27,10 @@ extensions = [ "sphinx.ext.autodoc", + "sphinx.ext.coverage", + "sphinx.ext.napoleon", "sphinx.ext.doctest", + "myst_parser", # Allows to use markdown files instead of rst "sphinx.ext.viewcode", "sphinx.ext.autosummary", "numpydoc", @@ -39,9 +44,18 @@ "python": ("http://docs.python.org/3.8", None), } +# Settings to support markdown files +source_suffix = { + ".rst": "restructuredtext", + ".md": "markdown", +} + templates_path = ["_templates"] exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] +autodoc_member_order = "bysource" +autodoc_preserve_defaults = True + numpydoc_show_class_members = False # -- Options for HTML output ------------------------------------------------- @@ -61,3 +75,10 @@ "Miscellaneous", ), ] + +# Add custom css +html_css_files = [ + "custom.css", +] + +html_favicon = "_static/favicon.ico" diff --git a/docs/conf___.py b/docs/conf___.py deleted file mode 100755 index b3335a42..00000000 --- a/docs/conf___.py +++ /dev/null @@ -1,320 +0,0 @@ -# -*- coding: utf-8 -*- -# -# Pydna documentation build configuration file, created by -# sphinx-quickstart on Wed Jul 17 12:20:24 2013. -# -# This file is execfile()d with the current directory set to its containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -import sys, os - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# sys.path.insert(0, os.path.abspath('.')) - -# -- General configuration ----------------------------------------------------- - -# If your documentation needs a minimal Sphinx version, state it here. -# needs_sphinx = '1.2.3' - -# Add any Sphinx extension module names here, as strings. They can be extensions -# coming with Sphinx (named 'sphinx.ext.*') or your custom ones. -extensions = [ - "sphinx.ext.autodoc", - "sphinx.ext.doctest", - "sphinx.ext.viewcode", - "sphinx.ext.autosummary", - "numpydoc", - "sphinx.ext.intersphinx", -] - -# Add mappings https://kev.inburke.com/kevin/sphinx-interlinks -intersphinx_mapping = { - "biopython": ("https://biopython.org/docs/latest/api/", None), - "python": ("http://docs.python.org/3.8", None), -} - -numpydoc_show_class_members = False - -# Add any paths that contain templates here, relative to this directory. -templates_path = ["_templates"] - -# The suffix of source filenames. -source_suffix = ".rst" - -# The encoding of source files. -# source_encoding = 'utf-8-sig' - -# The master toctree document. -master_doc = "index" - -# General information about the project. -# project = "Pydna" -# copyright = "2013-2023, Bjรถrn Johansson" - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. - -# version = '0.1' - -# The full version using versioneer -# import versioneer - -# print "hej", os.getcwd() -# import imp -# fp, pathname, description = imp.find_module('versioneer', ['..']) -# print fp, pathname, description -# versioneer = imp.load_module('versioneer', fp, pathname, description) -# del imp -# versioneer.VCS = 'git' -# versioneer.versionfile_source = '../src/pydna/_version.py' -# versioneer.versionfile_build = '../src/pydna/_version.py' -# versioneer.tag_prefix = '' # tags are like v1.2.0 -# versioneer.parentdir_prefix = '..' -# release = versioneer.get_version() -# The short X.Y version. - -# Read version from __init__.py -# for line in open('../pydna/__init__.py'): -# if line.startswith('__version'): -# exec(line.strip()) - - -# release = get_versions()["version"] -# release = __version__ -# version = '.'.join(release.split('.')[:2]) - - -# exec(open("../pydna/_version.py").read()) -# release = get_versions()["version"] -# version = ".".join(release.split(".")[:2]) - -# contents of docs/conf.py -# from pkg_resources import get_distribution - -# release = get_distribution("pydna").version -# for example take major/minor -# version = ".".join(release.split(".")[:3]) - - -# contents of docs/conf.py -from importlib.metadata import version - -release = version("pydna") -# for example take major/minor -version = ".".join(release.split(".")[:3]) - - -# The full version, including alpha/beta/rc tags. -# f = [l for l in open("../pydna/__init__.py").readlines() if l.startswith("__version__")].pop() -# exec(f) -# print __version__ -# release = __version__ -# release = '0.1' - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -# language = None - -# There are two options for replacing |today|: either, you set today to some -# non-false value, then it is used: -# today = '' -# Else, today_fmt is used as the format for a strftime call. -# today_fmt = '%B %d, %Y' - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -exclude_patterns = ["_build"] - -# The reST default role (used for this markup: `text`) to use for all documents. -# default_role = None - -# If true, '()' will be appended to :func: etc. cross-reference text. -# add_function_parentheses = True - -# If true, the current module name will be prepended to all description -# unit titles (such as .. function::). -# add_module_names = True - -# If true, sectionauthor and moduleauthor directives will be shown in the -# output. They are ignored by default. -# show_authors = False - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = "sphinx" - -# A list of ignored prefixes for module index sorting. -# modindex_common_prefix = [] - -# If true, keep warnings as "system message" paragraphs in the built documents. -# keep_warnings = False - - -# -- Options for HTML output --------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# html_theme = "sphinx_rtd_theme" - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -# html_theme_options = {} - -# Add any paths that contain custom themes here, relative to this directory. -# html_theme_path = [] - -# The name for this set of Sphinx documents. If None, it defaults to -# " v documentation". -# html_title = None - -# A shorter title for the navigation bar. Default is the same as html_title. -# html_short_title = None - -# The name of an image file (relative to this directory) to place at the top -# of the sidebar. -# html_logo = None - -# The name of an image file (within the static path) to use as favicon of the -# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 -# pixels large. -# html_favicon = None - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ["_static"] - -# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, -# using the given strftime format. -# html_last_updated_fmt = '%b %d, %Y' - -# If true, SmartyPants will be used to convert quotes and dashes to -# typographically correct entities. -# html_use_smartypants = True - -# Custom sidebar templates, maps document names to template names. -# html_sidebars = {} - -# Additional templates that should be rendered to pages, maps page names to -# template names. -# html_additional_pages = {} - -# If false, no module index is generated. -# html_domain_indices = True - -# If false, no index is generated. -# html_use_index = True - -# If true, the index is split into individual pages for each letter. -# html_split_index = False - -# If true, links to the reST sources are added to the pages. -# html_show_sourcelink = True - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -# html_show_sphinx = True - -# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. -# html_show_copyright = True - -# If true, an OpenSearch description file will be output, and all pages will -# contain a tag referring to it. The value of this option must be the -# base URL from which the finished HTML is served. -# html_use_opensearch = '' - -# This is the file name suffix for HTML files (e.g. ".xhtml"). -# html_file_suffix = None - -# Output file base name for HTML help builder. -htmlhelp_basename = "Pydnadoc" - - -# -- Options for LaTeX output -------------------------------------------------- - -latex_elements = { - # The paper size ('letterpaper' or 'a4paper'). - #'papersize': 'letterpaper', - # The font size ('10pt', '11pt' or '12pt'). - #'pointsize': '10pt', - # Additional stuff for the LaTeX preamble. - #'preamble': '', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, author, documentclass [howto/manual]). -latex_documents = [ - ("index", "Pydna.tex", "Pydna Documentation", "Bjรถrn Johansson", "manual"), -] - -# The name of an image file (relative to this directory) to place at the top of -# the title page. -# latex_logo = None - -# For "manual" documents, if this is true, then toplevel headings are parts, -# not chapters. -# latex_use_parts = False - -# If true, show page references after internal links. -# latex_show_pagerefs = False - -# If true, show URL addresses after external links. -# latex_show_urls = False - -# Documents to append as an appendix to all manuals. -# latex_appendices = [] - -# If false, no module index is generated. -# latex_domain_indices = True - - -# -- Options for manual page output -------------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -# man_pages = [ -# ('index', 'pydna', 'Pydna Documentation', -# ['Bjรถrn Johansson'], 1) -# ] - -# If true, show URL addresses after external links. -# man_show_urls = False - - -# -- Options for Texinfo output ------------------------------------------------ - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - ( - "index", - "Pydna", - "Pydna Documentation", - "Bjรถrn Johansson", - "Pydna", - "One line description of project.", - "Miscellaneous", - ), -] - -# Documents to append as an appendix to all manuals. -# texinfo_appendices = [] - -# If false, no module index is generated. -# texinfo_domain_indices = True - -# How to display URL addresses: 'footnote', 'no', or 'inline'. -# texinfo_show_urls = 'footnote' - -# If true, do not generate a @detailmenu in the "Top" node's menu. -# texinfo_no_detailmenu = False diff --git a/docs/cookbook/GUP1_locus.gb b/docs/cookbook/GUP1_locus.gb index 4b4cccf4..6c0bdc1d 100644 --- a/docs/cookbook/GUP1_locus.gb +++ b/docs/cookbook/GUP1_locus.gb @@ -1,11 +1,12 @@ LOCUS . 3683 bp DNA linear UNK 10-JAN-2013 -DEFINITION GUP1_locus +DEFINITION GUP1_locus. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna ldseguid=2pk-W7lWMNwkVe-mOiV9LiE_rXA 2024-06-11T18:43:07 FEATURES Location/Qualifiers rep_origin complement(383..604) /note="ARS716; Autonomously Replicating Sequence" @@ -36,7 +37,7 @@ FEATURES Location/Qualifiers [Evidence IMP] [PMID 18036137]" /GO_function="GO:0015293 - symporter activity [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL084C" /note="Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative @@ -94,7 +95,7 @@ FEATURES Location/Qualifiers IEA]" /GO_function="GO:0003676 - nucleic acid binding [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL085W" /note="hypothetical protein; mutant has long chronological lifespan; has homology to Staphylococcus aureus nuclease; diff --git a/docs/cookbook/YEp24PGK_XK.gb b/docs/cookbook/YEp24PGK_XK.gb index 32041d76..025ebe3e 100644 --- a/docs/cookbook/YEp24PGK_XK.gb +++ b/docs/cookbook/YEp24PGK_XK.gb @@ -3,9 +3,10 @@ DEFINITION description. ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=Rszaoc76OKSdw6Q78zj2RZzmR0I 2024-06-11T18:43:04 FEATURES Location/Qualifiers rep_origin 530..1690 /note="2 micron origin" diff --git a/docs/cookbook/YEp24PGK_XK_vector.gb b/docs/cookbook/YEp24PGK_XK_vector.gb index b64a4b5d..905196f8 100644 --- a/docs/cookbook/YEp24PGK_XK_vector.gb +++ b/docs/cookbook/YEp24PGK_XK_vector.gb @@ -1,11 +1,12 @@ LOCUS . 11452 bp DNA circular UNK 16-JAN-2013 -DEFINITION _BglII +DEFINITION _BglII. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=Rszaoc76OKSdw6Q78zj2RZzmR0I 2024-06-11T18:40:26 FEATURES Location/Qualifiers misc_binding 308..313 /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} diff --git a/docs/cookbook/cookbook.ipynb b/docs/cookbook/cookbook.ipynb index 116a8422..ab8748be 100644 --- a/docs/cookbook/cookbook.ipynb +++ b/docs/cookbook/cookbook.ipynb @@ -17,6 +17,15 @@ "" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, { "cell_type": "markdown", "metadata": {}, @@ -35,7 +44,7 @@ "\n", "The advantage of documenting with pydna is that the pydna code unambiguously describe the experiment and can be executed to yield the sequence of the of the resulting DNA molecule(s) and all intermediary steps. Pydna code describing a sub cloning is reasonably compact and also meant to be easily readable.\n", "\n", - "Look [here](https://github.com/BjornFJohansson/pydna-examples) for examples." + "Look [here](https://github.com/MetabolicEngineeringGroupCBMA/pydna-examples?tab=readme-ov-file#pydna-examples) for examples." ] }, { @@ -63,7 +72,18 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "#Install pydna for colab.\n", + "%%capture\n", + "!pip install pydna" + ] + }, + { + "cell_type": "code", + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -72,7 +92,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -81,7 +101,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -97,7 +117,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -109,7 +129,7 @@ "Gbnk(o9637 KC562906.1)" ] }, - "execution_count": 4, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -120,7 +140,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -131,7 +151,7 @@ "CTTA..AGTT" ] }, - "execution_count": 5, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -142,7 +162,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -151,7 +171,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -166,7 +186,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -175,7 +195,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -187,7 +207,7 @@ "Gbnk(-3140 Z72979.1)" ] }, - "execution_count": 9, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -198,7 +218,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -209,7 +229,7 @@ "TACT..TTTT" ] }, - "execution_count": 10, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -220,7 +240,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -229,7 +249,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -245,7 +265,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -259,7 +279,7 @@ " 3ACAAGTCATTAAGTC...GACCTTTTCTGAGAGTAGATT5" ] }, - "execution_count": 13, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -270,7 +290,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -279,7 +299,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -288,7 +308,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -297,7 +317,7 @@ "(Dseqrecord(-7), Dseqrecord(-1819), Dseqrecord(-11))" ] }, - "execution_count": 16, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -308,7 +328,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -319,7 +339,7 @@ " GAGA..ATTCCTAG" ] }, - "execution_count": 17, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -330,7 +350,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -339,7 +359,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -350,7 +370,7 @@ " AGGG..TTTTCTAG" ] }, - "execution_count": 19, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -361,7 +381,7 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -370,7 +390,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -379,7 +399,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -388,7 +408,7 @@ "'t9fs_9UvEuD-Ankyy8XEr1hD5DQ'" ] }, - "execution_count": 22, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -399,7 +419,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -461,7 +481,7 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -477,7 +497,7 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -486,7 +506,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -495,7 +515,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -509,7 +529,7 @@ " 3agtcgtaaaatccatttaaggc...ctgtcctacgactagtcgctgta5" ] }, - "execution_count": 27, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -520,7 +540,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -529,7 +549,7 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -538,7 +558,7 @@ }, { "cell_type": "code", - "execution_count": 30, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -550,7 +570,7 @@ "File(pGREG505)(o9465)" ] }, - "execution_count": 30, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -561,7 +581,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -570,7 +590,7 @@ }, { "cell_type": "code", - "execution_count": 40, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -579,7 +599,7 @@ }, { "cell_type": "code", - "execution_count": 41, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -588,7 +608,7 @@ "(Dseqrecord(-8301), Dseqrecord(-1172))" ] }, - "execution_count": 41, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -599,7 +619,7 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -615,7 +635,7 @@ }, { "cell_type": "code", - "execution_count": 43, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -624,7 +644,7 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -637,7 +657,7 @@ "algorithm..: common_sub_strings" ] }, - "execution_count": 44, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -648,7 +668,7 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -664,7 +684,7 @@ }, { "cell_type": "code", - "execution_count": 53, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -673,7 +693,7 @@ }, { "cell_type": "code", - "execution_count": 55, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -682,7 +702,7 @@ "True" ] }, - "execution_count": 55, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -693,7 +713,7 @@ }, { "cell_type": "code", - "execution_count": 56, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -702,7 +722,7 @@ }, { "cell_type": "code", - "execution_count": 57, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -711,7 +731,7 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -720,7 +740,7 @@ "'0R8hr15t-psjHVuuTj_JufGxOPg'" ] }, - "execution_count": 58, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -731,7 +751,7 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": null, "metadata": {}, "outputs": [ { diff --git a/docs/cookbook/pGREG505.gb b/docs/cookbook/pGREG505.gb index 0fbe8df9..51a6647f 100644 --- a/docs/cookbook/pGREG505.gb +++ b/docs/cookbook/pGREG505.gb @@ -1,110 +1,111 @@ -LOCUS pGREG505 9465 bp ds-DNA circular 15-DEC-2012 -DEFINITION pGREG505 circular +LOCUS pGREG505 9465 bp ds-DNA circular UNK 15-DEC-2012 +DEFINITION pGREG505 circular. ACCESSION pGREG505 VERSION pGREG505 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=cr9QvaW0QQWgiRNmG3W-ebeCQK0 2024-06-11T18:53:34 FEATURES Location/Qualifiers primer_bind 9444..9463 - /label=T3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3597..3614) - /label=M13-fwd - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-fwd" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind 9406..9426 - /label=M13-rev - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-rev" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3568..3588) - /label=T7 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T7" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 8356..9038 - /label=ColE1 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="ColE1 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3775..4081 - /label=F1 ori - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="F1 ori" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3758..4213 - /label=M13 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 3685..3753 - /label=LacZ alpha - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacZ alpha" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_binding 9378..9400 - /label=LacO - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacO" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 1997..2030 - /label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 3499..3532 - /label=LoxP(1) - /ApEinfo_label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP(1)" + /ApEinfo_label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 7599..8261 - /label=AmpR - /ApEinfo_fwdcolor=yellow - /ApEinfo_revcolor=yellow - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="AmpR" + /ApEinfo_fwdcolor="yellow" + /ApEinfo_revcolor="yellow" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 40..483 - /label=GAL1p - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="GAL1p" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 530..562 - /label=rec1 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec1" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 1725..1759 - /label=rec2 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec2" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 565..1724 - /label=HIS3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="HIS3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 aaaagctgga gctcgtttaa acggcgcgcc tagtacggat tagaagccgc cgagcgggtg 61 acagccctcc gaaggaagac tctcctccgt gcgtcctcgt cttcaccggt cgcgttcctg diff --git a/docs/cookbook/pGUP1.gb b/docs/cookbook/pGUP1.gb index 368cc35d..fed2aec2 100644 --- a/docs/cookbook/pGUP1.gb +++ b/docs/cookbook/pGUP1.gb @@ -3,9 +3,10 @@ DEFINITION description. ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:53:31 FEATURES Location/Qualifiers misc_feature 40..483 /label="GAL1p" diff --git a/docs/cookbook/pGUP1_NEW.gb b/docs/cookbook/pGUP1_NEW.gb index e3d8c749..1d4dd96d 100644 --- a/docs/cookbook/pGUP1_NEW.gb +++ b/docs/cookbook/pGUP1_NEW.gb @@ -3,9 +3,10 @@ DEFINITION . ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:43:02 FEATURES Location/Qualifiers misc_recomb 242..275 /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} diff --git a/docs/cookbook/pGUP1_OLD.gb b/docs/cookbook/pGUP1_OLD.gb index b3acdb1b..7266cee7 100644 --- a/docs/cookbook/pGUP1_OLD.gb +++ b/docs/cookbook/pGUP1_OLD.gb @@ -3,9 +3,10 @@ DEFINITION description. ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:43:05 FEATURES Location/Qualifiers misc_recomb 272..305 /label="LoxP" diff --git a/docs/cookbook/pGUP1_vector.gb b/docs/cookbook/pGUP1_vector.gb index 21dad69e..83369643 100644 --- a/docs/cookbook/pGUP1_vector.gb +++ b/docs/cookbook/pGUP1_vector.gb @@ -1,11 +1,12 @@ LOCUS . 9981 bp DNA circular UNK 16-JAN-2013 -DEFINITION circular assembly product 9981 +DEFINITION circular assembly product 9981. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:43:03 FEATURES Location/Qualifiers misc_feature 40..483 /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} @@ -39,7 +40,7 @@ FEATURES Location/Qualifiers [Evidence IMP] [PMID 18036137]" /GO_function="GO:0015293 - symporter activity [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL084C" /note="Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative diff --git a/docs/example.ipynb b/docs/example.ipynb deleted file mode 100644 index d40dca9f..00000000 --- a/docs/example.ipynb +++ /dev/null @@ -1,453 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 3, - "id": "157edf0d-1056-43b8-bcef-b676d9794192", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(-9)\n", - "\u001b[48;5;11matgccctaa\u001b[0m\n", - "tacgggatt" - ] - }, - "execution_count": 3, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "from pydna.dseqrecord import Dseqrecord\n", - "\n", - "dsr = Dseqrecord(\"atgccctaa\")\n", - "dsr.add_feature() # a small gene: atgccctaa\n", - "dsr.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 4, - "id": "8a0c0235-b358-446f-88a5-0a8a28408399", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "5atg...taa3\n", - " |||\n", - " 3att5\n", - "5atg3\n", - " |||\n", - "3tac...att5" - ] - }, - "execution_count": 4, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "from pydna.design import primer_design\n", - "\n", - "amplicon = primer_design(dsr, limit=3, target_tm=0)\n", - "amplicon.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "id": "54cfbab9-1f54-434a-a37a-819af88a3263", - "metadata": {}, - "outputs": [], - "source": [ - "forward_primer = \"ccccGGATCC\" + amplicon.forward_primer\n", - "reverse_primer = \"ttttGGATCC\" + amplicon.reverse_primer" - ] - }, - { - "cell_type": "code", - "execution_count": 6, - "id": "332f14b9-a444-4aae-896b-2b3d53bacee5", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - " 5atg...taa3\n", - " |||\n", - " 3attCCTAGGtttt5\n", - "5ccccGGATCCatg3\n", - " |||\n", - " 3tac...att5" - ] - }, - "execution_count": 6, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "from pydna.amplify import pcr\n", - "\n", - "pcr_product = pcr(forward_primer, reverse_primer, dsr, limit=3)\n", - "pcr_product.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 7, - "id": "12d6cf52-c50e-434b-bdb2-9eda540b4eae", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(-29)\n", - "ccccGGATCC\u001b[48;5;11matgccctaa\u001b[0mGGATCCaaaa\n", - "ggggCCTAGGtacgggattCCTAGGtttt" - ] - }, - "execution_count": 7, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "Dseqrecord(pcr_product).figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 8, - "id": "39f030ff", - "metadata": { - "lines_to_next_cell": 0 - }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Dseqrecord(-9)\n", - "\u001b[48;5;11m\u001b[0mccccG \n", - "ggggCCTAG\n", - "\n", - "Dseqrecord(-19)\n", - "GATCC\u001b[48;5;11matgccctaa\u001b[0mG \n", - " GtacgggattCCTAG\n", - "\n", - "Dseqrecord(-9)\n", - "\u001b[48;5;11m\u001b[0mGATCCaaaa\n", - " Gtttt\n" - ] - } - ], - "source": [ - "from Bio.Restriction import BamHI # cuts GGATCC\n", - "\n", - "a, b, c = pcr_product.cut(BamHI)\n", - "\n", - "print(a.figure())\n", - "print()\n", - "print(b.figure())\n", - "print()\n", - "print(c.figure())" - ] - }, - { - "cell_type": "code", - "execution_count": 9, - "id": "ff017051-8946-474a-8bcc-1e9e6b6e0a48", - "metadata": {}, - "outputs": [], - "source": [ - "vector = Dseqrecord(\"aatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\", circular=True, name=\"vect\")" - ] - }, - { - "cell_type": "code", - "execution_count": 10, - "id": "f51cd402-a788-4dbe-852c-4d9df340dac5", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(o50)\n", - "\u001b[48;5;11m\u001b[0maatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\n", - "ttacaaaaagggaGGGCCCgttttaTCTAGAacgatacgtagtagctaga" - ] - }, - "execution_count": 10, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "vector.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 11, - "id": "13cf920d-de6d-47d8-b693-4048e7af5d01", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(o65)\n", - "aatgtttttccctCCCGGGcaaaatAGATCC\u001b[48;5;11matgccctaa\u001b[0mGGATCTtgctatgcatcatcgatct\n", - "ttacaaaaagggaGGGCCCgttttaTCTAGGtacgggattCCTAGAacgatacgtagtagctaga" - ] - }, - "execution_count": 11, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "from Bio.Restriction import BglII # cuts AGATCT\n", - "\n", - "linear_vector_bgl = vector.linearize(BglII)\n", - "\n", - "rec_vector = (linear_vector_bgl + b).looped().synced(vector)\n", - "\n", - "rec_vector.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 12, - "id": "fcc9ba91-c373-47cc-ae54-4a481171a27a", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(-21)\n", - "cctCCC\u001b[48;5;11matgaaataa\u001b[0mGGGcaa\n", - "ggaGGGtactttattCCCgtt" - ] - }, - "execution_count": 12, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "gene2 = Dseqrecord(\"cctCCCatgaaataaGGGcaa\", name=\"gene2\")\n", - "gene2.add_feature(6, 15)\n", - "gene2.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 13, - "id": "ef2659b0-581c-40b4-8fbb-1a3b9aa6f145", - "metadata": {}, - "outputs": [], - "source": [ - "from pydna.assembly import Assembly\n", - "from Bio.Restriction import SmaI # cuts CCCGGG\n", - "\n", - "linear_vector_sma = vector.linearize(SmaI)\n", - "\n", - "asm = Assembly((linear_vector_sma, gene2), limit=6)\n", - "\n", - "candidate, *rest = asm.assemble_circular()" - ] - }, - { - "cell_type": "code", - "execution_count": 14, - "id": "1c630121-b93f-49eb-81c5-6d6b9c455340", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - " -|vect_lin| 6\n", - "| \\/\n", - "| /\\\n", - "| 6|gene2| 6\n", - "| \\/\n", - "| /\\\n", - "| 6-\n", - "| |\n", - " -----------------------" - ] - }, - "execution_count": 14, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "candidate.figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 15, - "id": "c5e96478-d655-4bf7-9188-454b4cd8c9d8", - "metadata": {}, - "outputs": [], - "source": [ - "candidate = candidate.synced(vector, limit=10)" - ] - }, - { - "cell_type": "code", - "execution_count": 16, - "id": "5fecfd6c-a1da-4e8d-b090-f0fa54c02533", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "Dseqrecord(o59)\n", - "aatgtttttccctCCC\u001b[48;5;11matgaaataa\u001b[0mGGGcaaaatAGATCTtgctatgcatcatcgatct\n", - "ttacaaaaagggaGGGtactttattCCCgttttaTCTAGAacgatacgtagtagctaga" - ] - }, - "execution_count": 16, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "Dseqrecord(candidate).figure()" - ] - }, - { - "cell_type": "code", - "execution_count": 17, - "id": "8c42ba40-f7c3-47c0-81f0-86cd249c5a02", - "metadata": {}, - "outputs": [], - "source": [ - "from pydna.gel import gel\n", - "from pydna.ladders import GeneRuler_1kb_plus" - ] - }, - { - "cell_type": "code", - "execution_count": 18, - "id": "3724afb9-545e-479a-8024-ff1d830a4716", - "metadata": {}, - "outputs": [], - "source": [ - "band = Dseqrecord(\"GATC\" * 500)" - ] - }, - { - "cell_type": "code", - "execution_count": 20, - "id": "02efdba4-c514-447d-b093-21b9b9011d47", - "metadata": {}, - "outputs": [], - "source": [ - "im = gel(\n", - " [\n", - " GeneRuler_1kb_plus,\n", - " [\n", - " band,\n", - " ],\n", - " ]\n", - ")" - ] - }, - { - "cell_type": "code", - "execution_count": 22, - "id": "b9348612-69b8-4fa6-8bd3-2c6d48c2b7b5", - "metadata": {}, - "outputs": [ - { - "data": { - "image/png": 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- "text/plain": [ - "" - ] - }, - "execution_count": 22, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "im.rotate(90, expand=1)" - ] - }, - { - "cell_type": "code", - "execution_count": 25, - "id": "6e458bc3-e6ca-45b0-9237-c9ac288b07e2", - "metadata": {}, - "outputs": [], - "source": [ - "from PIL import ImageOps" - ] - }, - { - "cell_type": "code", - "execution_count": 26, - "id": "3e3a744e-203f-4058-ae97-2d300e1da104", - "metadata": {}, - "outputs": [ - { - "data": { - "image/png": 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- "text/plain": [ - "" - ] - }, - "execution_count": 26, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "ImageOps.invert(im)" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "c7909cef-0bed-497c-8823-675ad2d26e23", - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "jupytext": { - "cell_metadata_filter": "-all", - "main_language": "python", - "notebook_metadata_filter": "-all" - }, - "kernelspec": { - "display_name": "Python [conda env:bjorn311]", - "language": "python", - "name": "conda-env-bjorn311-py" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.11.0" - } - }, - "nbformat": 4, - "nbformat_minor": 5 -} diff --git a/docs/example_gallery.md b/docs/example_gallery.md new file mode 100644 index 00000000..9d7155a4 --- /dev/null +++ b/docs/example_gallery.md @@ -0,0 +1,7 @@ +# Example gallery + +Below are some examples that show the functionality of pydna in real-world scenarios. + +* [Example_Restriction](./markdown_notebooks/Example_Restriction.md): PCRing a gene out of the genome, and cloning into a vector using restriction and ligation. +* [Example_Gibson](./markdown_notebooks/Example_Gibson.md): Gibson assembly of _R. cellulolyticum_ genomic fragments into a plasmid, from the original Gibson assembly paper [doi: 10.1038/nmeth.1318](https://www.nature.com/articles/nmeth.1318). +* [Example_CRISPR](./markdown_notebooks/Example_CRISPR.md): Using CRISPR with homologous recombination to delete genes by making two cuts in the genome, and repair it with an oligo. Used in the industrially relevant _K. phaffi_. diff --git a/docs/getting_started.md b/docs/getting_started.md new file mode 100644 index 00000000..c5f6c7fc --- /dev/null +++ b/docs/getting_started.md @@ -0,0 +1,25 @@ +# Getting started + + +The best way to get started is to follow our tutorial notebooks, you can find them in the +repository folder [docs/notebooks](https://github.com/BjornFJohansson/pydna/tree/main/docs/notebooks) and +are reproduced here so they can serve as documentation. + +You can run the notebooks locally, but also on the browser using Google Colab, simply click in the badge of +the notebook to open it in Colab. + +We recommend that you first go through the following notebooks, which cover the basics of how sequences are handled in pydna: + +1. [Dseq](./markdown_notebooks/Dseq.md): Basic introduction to how sequences are handled in pydna. +2. [Dseq_Features](./markdown_notebooks/Dseq_Features.md): How to work with sequence features, which are often present in genbank or dna files to mark regions of interest (coding sequences, resistance markers, etc.) +3. [Importing_Seqs](./markdown_notebooks/Importing_Seqs.md): How to import sequences from various sources. + +Next, you can learn how specific cloning techniques are handled. + +* [Restrict_Ligate_Cloning](./markdown_notebooks/Restrict_Ligate_Cloning.md): How to perform restriction and ligation. +* [PCR](./markdown_notebooks/PCR.md): How to perform PCR. +* [primer_design](./markdown_notebooks/primer_design.md): How to design primers for Gibson assembly and restriction-ligation cloning. +* [Gibson](./markdown_notebooks/Gibson.md): How to perform Gibson assembly. +* [CRISPR](./markdown_notebooks/CRISPR.md): How to perform CRISPR-Cas9 cutting. + +These notebooks cover the basics, but you can see real-world examples in the [example gallery](./example_gallery.md). diff --git a/docs/index.rst b/docs/index.rst index c24e58fb..69ab1aa0 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,205 +1,30 @@ -.. pydna documentation master file, created by - sphinx-quickstart on Fri Dec 2 16:56:48 2022. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. +Pydna +====== -Welcome to pydna's documentation! -================================= - -Module contents ---------------- - -.. automodule:: pydna - :members: - :undoc-members: - :show-inheritance: - -pydna.dseq module ------------------ - -.. automodule:: pydna.dseq - :members: - :undoc-members: - :show-inheritance: - -pydna.dseqrecord module ------------------------ - -.. automodule:: pydna.dseqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.amplicon module ---------------------- - -.. automodule:: pydna.amplicon - :members: - :undoc-members: - :show-inheritance: - -pydna.amplify module --------------------- - -.. automodule:: pydna.amplify - :members: - :undoc-members: - :show-inheritance: - -pydna.assembly module ---------------------- - -.. automodule:: pydna.assembly - :members: - :undoc-members: - :show-inheritance: - -pydna.common_sub_strings module -------------------------------- - -.. automodule:: pydna.common_sub_strings - :members: - :undoc-members: - :show-inheritance: - -pydna.contig module -------------------- - -.. automodule:: pydna.contig - :members: - :undoc-members: - :show-inheritance: - -pydna.design module -------------------- - -.. automodule:: pydna.design - :members: - :undoc-members: - :show-inheritance: - -pydna.download module ---------------------- - -.. automodule:: pydna.download - :members: - :undoc-members: - :show-inheritance: - - - -pydna.editor module -------------------- - -.. automodule:: pydna.editor - :members: - :undoc-members: - :show-inheritance: - -pydna.gel module ----------------- - -.. automodule:: pydna.gel - :members: - :undoc-members: - :show-inheritance: - -pydna.genbank module --------------------- - -.. automodule:: pydna.genbank - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfile module ------------------------- - -.. automodule:: pydna.genbankfile - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfixer module -------------------------- - -.. automodule:: pydna.genbankfixer - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankrecord module --------------------------- - -.. automodule:: pydna.genbankrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.myprimers module ----------------------- - -.. automodule:: pydna.myprimers - :members: - :undoc-members: - :show-inheritance: - -pydna.parsers module --------------------- - -.. automodule:: pydna.parsers - :members: - :undoc-members: - :show-inheritance: - -pydna.primer module -------------------- - -.. automodule:: pydna.primer - :members: - :undoc-members: - :show-inheritance: - -pydna.readers module --------------------- - -.. automodule:: pydna.readers - :members: - :undoc-members: - :show-inheritance: - -pydna.seqrecord module ----------------------- - -.. automodule:: pydna.seqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.tm module ---------------- - -.. automodule:: pydna.tm - :members: - :undoc-members: - :show-inheritance: - -pydna.utils module ------------------- - -.. automodule:: pydna.utils - :members: - :undoc-members: - :show-inheritance: +Welcome to pydna's documentation! +--------------------------------- +.. include:: ../README.md + :parser: myst_parser.sphinx_ + :start-after: + :end-before: +.. toctree:: + :caption: Contents: + :maxdepth: 1 + :hidden: + self + installation + modules/index + getting_started + example_gallery -Indices and tables -================== +.. Indices and tables +.. ================== -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` +.. * :ref:`genindex` +.. * :ref:`modindex` +.. * :ref:`search` diff --git a/docs/index___.rst___ b/docs/index___.rst___ deleted file mode 100755 index ffe4362d..00000000 --- a/docs/index___.rst___ +++ /dev/null @@ -1,200 +0,0 @@ -Welcome to Pydna's documentation! -================================= - - -Module contents ---------------- - -.. automodule:: pydna - :members: - :undoc-members: - :show-inheritance: - -pydna.dseq module ------------------ - -.. automodule:: pydna.dseq - :members: - :undoc-members: - :show-inheritance: - -pydna.dseqrecord module ------------------------ - -.. automodule:: pydna.dseqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.amplicon module ---------------------- - -.. automodule:: pydna.amplicon - :members: - :undoc-members: - :show-inheritance: - -pydna.amplify module --------------------- - -.. automodule:: pydna.amplify - :members: - :undoc-members: - :show-inheritance: - -pydna.assembly module ---------------------- - -.. automodule:: pydna.assembly - :members: - :undoc-members: - :show-inheritance: - -pydna.common_sub_strings module -------------------------------- - -.. automodule:: pydna.common_sub_strings - :members: - :undoc-members: - :show-inheritance: - -pydna.contig module -------------------- - -.. automodule:: pydna.contig - :members: - :undoc-members: - :show-inheritance: - -pydna.design module -------------------- - -.. automodule:: pydna.design - :members: - :undoc-members: - :show-inheritance: - -pydna.download module ---------------------- - -.. automodule:: pydna.download - :members: - :undoc-members: - :show-inheritance: - - - -pydna.editor module -------------------- - -.. automodule:: pydna.editor - :members: - :undoc-members: - :show-inheritance: - -pydna.gel module ----------------- - -.. automodule:: pydna.gel - :members: - :undoc-members: - :show-inheritance: - -pydna.genbank module --------------------- - -.. automodule:: pydna.genbank - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfile module ------------------------- - -.. automodule:: pydna.genbankfile - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankfixer module -------------------------- - -.. automodule:: pydna.genbankfixer - :members: - :undoc-members: - :show-inheritance: - -pydna.genbankrecord module --------------------------- - -.. automodule:: pydna.genbankrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.myprimers module ----------------------- - -.. automodule:: pydna.myprimers - :members: - :undoc-members: - :show-inheritance: - -pydna.parsers module --------------------- - -.. automodule:: pydna.parsers - :members: - :undoc-members: - :show-inheritance: - -pydna.primer module -------------------- - -.. automodule:: pydna.primer - :members: - :undoc-members: - :show-inheritance: - -pydna.readers module --------------------- - -.. automodule:: pydna.readers - :members: - :undoc-members: - :show-inheritance: - -pydna.seqrecord module ----------------------- - -.. automodule:: pydna.seqrecord - :members: - :undoc-members: - :show-inheritance: - -pydna.tm module ---------------- - -.. automodule:: pydna.tm - :members: - :undoc-members: - :show-inheritance: - -pydna.utils module ------------------- - -.. automodule:: pydna.utils - :members: - :undoc-members: - :show-inheritance: - - - - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` diff --git a/docs/installation.rst b/docs/installation.rst new file mode 100644 index 00000000..db68d711 --- /dev/null +++ b/docs/installation.rst @@ -0,0 +1,7 @@ +Installation +============ + +.. include:: ../README.md + :parser: myst_parser.sphinx_ + :start-after: + :end-before: diff --git a/docs/notebooks/CRISPR.ipynb b/docs/notebooks/CRISPR.ipynb new file mode 100644 index 00000000..bfb5f7b2 --- /dev/null +++ b/docs/notebooks/CRISPR.ipynb @@ -0,0 +1,134 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# How to Model CRISPR-Cas9 Experiments in pydna\n", + "\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "The pydna package can simulate CRISPR-Cas9 editing, which allows one to cut DNA sequences at specific sites using guide RNAs (gRNAs) that direct the Cas9 protein. This page will guide you through the process of using the `pydna.crispr` module to model a CRISPR-Cas9 cut on a DNA sequence.\n", + "\n", + "The `pydna.crispr` module contains the `cas9` class to simulate the biological activites of the Cas9 protein and the guideRNA, which should be imported. In addtion, the `Dseqrecord` class has also been imported to generate an example target_sequence." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "from pydna.crispr import cas9, protospacer\n", + "from pydna.dseqrecord import Dseqrecord" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The target sequence and guideRNA (gRNA) sequence needs to be generated. Note the the sequence can be passed as a `Dseqrecord` object." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "cutting with enzyme 1: (Dseqrecord(-17), Dseqrecord(-6))\n", + "protospacer: GTTACTTTACCCGACGTCCC\n", + "cutting with enzyme 2: (Dseqrecord(-17), Dseqrecord(-6))\n", + "cutting with no PAM in target: ()\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.crispr import cas9, protospacer\n", + "\n", + "# <----protospacer---><-------scaffold----------------->\n", + "guide = \"GTTACTTTACCCGACGTCCCgttttagagctagaaatagcaagttaaaataagg\"\n", + "target = \"GTTACTTTACCCGACGTCCCaGG\"\n", + "# <->\n", + "# PAM\n", + "\n", + "# Create an enzyme object with the protospacer\n", + "enzyme = cas9(\"GTTACTTTACCCGACGTCCC\")\n", + "\n", + "target_dseq = Dseqrecord(target)\n", + "\n", + "# Cut using the enzyme\n", + "print('cutting with enzyme 1:', target_dseq.cut(enzyme))\n", + "\n", + "\n", + "# Get the protospacer from the full gRNA sequence\n", + "gRNA_protospacers = protospacer(Dseqrecord(guide), cas=cas9)\n", + "# Print the protospacer (it's a list because often plasmids contain multiple gRNAs)\n", + "print('protospacer:', gRNA_protospacers[0])\n", + "gRNA_protospacer = gRNA_protospacers[0]\n", + "\n", + "# Create an enzyme from the protospacer\n", + "enzyme2 = cas9(gRNA_protospacer)\n", + "\n", + "# Simulate the cut\n", + "print('cutting with enzyme 2:', target_dseq.cut(enzyme2))\n", + "\n", + "\n", + "# Note that without the PAM, the cut will not be made.\n", + "\n", + "target_noPAM_dseq = Dseqrecord(\"GTTACTTTACCCGACGTCCCaaa\")\n", + "print(\"cutting with no PAM in target:\", target_noPAM_dseq.cut(enzyme2))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/CU329670.gb b/docs/notebooks/CU329670.gb new file mode 100644 index 00000000..2ca626d9 --- /dev/null +++ b/docs/notebooks/CU329670.gb @@ -0,0 +1,327 @@ +LOCUS CU329670 4538 bp DNA linear PLN 26-APR-2024 +DEFINITION Schizosaccharomyces pombe strain 972h- genome assembly, chromosome: + I. +ACCESSION CU329670 +VERSION CU329670.1 +DBLINK BioProject: PRJNA13836 + BioSample: SAMEA3138176 +KEYWORDS . +SOURCE Schizosaccharomyces pombe (fission yeast) + ORGANISM Schizosaccharomyces pombe + Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; + Schizosaccharomycetes; Schizosaccharomycetales; + Schizosaccharomycetaceae; Schizosaccharomyces. +REFERENCE 1 (bases 1 to 4538) + AUTHORS Lang,B.F. + TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces + pombe: highly homologous introns are inserted at the same position + of the otherwise less conserved cox1 genes in Schizosaccharomyces + pombe and Aspergillus nidulans + JOURNAL EMBO J 3 (9), 2129-2136 (1984) + PUBMED 6092057 +REFERENCE 2 (bases 1 to 4538) + AUTHORS Lang,B.F., Ahne,F. and Bonen,L. + TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces + pombe. The cytochrome b gene has an intron closely related to the + first two introns in the Saccharomyces cerevisiae cox1 gene + JOURNAL J Mol Biol 184 (3), 353-366 (1985) + PUBMED 4046021 +REFERENCE 3 (bases 1 to 4538) + AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W. + TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces + pombe. Sequence of the large-subunit ribosomal RNA gene, comparison + of potential secondary structure in fungal mitochondrial + large-subunit rRNAs and evolutionary considerations + JOURNAL Eur J Biochem 169 (3), 527-537 (1987) + PUBMED 2446871 +REFERENCE 4 (bases 1 to 4538) + AUTHORS Trinkl,H., Lang,B.F. and Wolf,K. + TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in + the mitochondrial genome of the fission yeast Schizosaccharomyces + pombe + JOURNAL Nucleic Acids Res 17 (16), 6730 (1989) + PUBMED 2780299 +REFERENCE 5 (bases 1 to 4538) + AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., + Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., + Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., + Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., + Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., + Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., + James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., + Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., + Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., + Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., + Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., + Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., + Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., + Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., + Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., + Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., + Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., + Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., + Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., + Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., + Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., + del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., + Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., + Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. + and Nurse,P. + TITLE The genome sequence of Schizosaccharomyces pombe + JOURNAL Nature 415 (6874), 871-880 (2002) + PUBMED 11859360 + REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to + Cerutti L]] +REFERENCE 6 + AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., + Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., + Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., + Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., + Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., + Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., + James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., + Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., + Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., + Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., + Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., + Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., + Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., + Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., + Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., + Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., + Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., + Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., + Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., + Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., + Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., + del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., + Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., + Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. + and Nurse,P. + TITLE The genome sequence of Schizosaccharomyces pombe + JOURNAL Nature 415 (6874), 871-880 (2002) + PUBMED 11859360 + REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to + Cerutti L]] +REFERENCE 7 (bases 1 to 4538) + AUTHORS Schafer,B., Hansen,M. and Lang,B.F. + TITLE Transcription and RNA-processing in fission yeast mitochondria + JOURNAL RNA 11 (5), 785-795 (2005) + PUBMED 15811919 +REFERENCE 8 + AUTHORS Wood,V. + CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium + TITLE Direct Submission + JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome + sequencing project, Sanger Institute, The Wellcome Trust Genome + Campus, Hinxton, Cambridge CB10 1SA +REFERENCE 9 + AUTHORS Wood,V. and Rutherford,K. + CONSRTM PomBase + TITLE Direct Submission + JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins + building, Tennis Court Rd, Cambridge, United Kingdom +COMMENT On or before Jan 26, 2012 this sequence version replaced + AL672256.4, AL009197.1, AL009227.1, AL021046.4, AL021809.4, + AL021813.1, AL021817.2, AL031180.3, AL034486.1, AL034565.1, + AL034583.1, AL035064.1, AL035248.2, AL035254.1, AL035439.1, + AL096845.1, AL109734.1, AL109738.1, AL109739.1, AL109770.1, + AL109820.1, AL109831.1, AL109832.1, AL109951.1, AL109988.1, + AL110469.1, AL110509.2, AL117210.1, AL117212.1, AL117213.1, + AL117390.1, AL121732.1, AL121741.1, AL121745.2, AL121764.1, + AL121765.1, AL121770.1, AL122032.1, AL132667.1, AL132675.1, + AL132714.1, AL132769.1, AL132779.2, AL132798.2, AL132828.1, + AL132839.1, AL132983.1, AL132984.1, AL133154.2, AL133156.1, + AL133157.1, AL133225.2, AL133302.1, AL133357.1, AL133359.1, + AL133360.1, AL133361.1, AL133442.1, AL133498.1, AL133521.1, + AL133522.1, AL135751.1, AL136078.1, AL136235.1, AL136499.1, + AL136521.2, AL136538.1, AL137130.1, AL138666.2, AL138854.1, + AL139315.1, AL157734.1, AL157811.1, AL157872.1, AL157917.1, + AL157993.1, AL157994.1, AL158056.1, AL159180.1, AL159951.1, + AL162531.1, AL162631.1, AL163031.1, AL163071.1, AL163191.2, + AL163481.1, AL163529.1, AL353014.1, AL353860.2, AL355012.1, + AL355013.1, AL355252.1, AL355452.1, AL355632.1, AL355652.1, + AL355653.1, AL356333.1, AL356335.1, AL357232.1, AL358272.1, + AL360054.1, AL360094.1, AL390095.1, AL390274.1, AL390814.1, + AL391713.1, AL391744.1, AL391746.2, AL391783.1, AL441621.1, + AL441624.1, AL512486.1, AL512487.1, AL512491.1, AL512493.1, + AL512496.1, AL512549.1, AL512562.1, AL583902.1, AL590562.1, + AL590582.1, AL590602.1, AL590605.1, AL590902.2, AL590903.1, + AL691401.1, AL691402.1, AL691405.1, Z49811.1, Z50112.1, Z50113.1, + Z50142.1, Z50728.2, Z54096.1, Z54142.2, Z54285.2, Z54308.1, + Z54328.1, Z54354.1, Z54366.1, Z56276.2, Z64354.1, Z66568.2, + Z67757.1, Z67961.2, Z67998.1, Z67999.1, Z68136.2, Z68144.1, + Z68166.1, Z68197.2, Z68198.1, Z68887.1, Z69086.1, Z69239.1, + Z69240.1, Z69368.1, Z69369.1, Z69380.1, Z69725.1, Z69726.1, + Z69727.1, Z69728.1, Z69729.1, Z69730.1, Z69731.1, Z69795.1, + Z69796.1, Z69944.1, Z70043.1, Z70690.1, Z70691.1, Z70721.1, + Z73099.2, Z73100.2, Z81312.1, Z81317.1, Z94864.1, Z95334.1, + Z95395.1, Z95396.2, Z97185.1, Z97208.1, Z97209.1, Z97210.2, + Z98056.2, Z98529.1, Z98530.2, Z98531.2, Z98532.1, Z98533.1, + Z98559.1, Z98560.1, Z98595.1, Z98596.1, Z98597.1, Z98598.1, + Z98600.1, Z98601.1, Z98602.1, Z98603.1, Z98762.1, Z98763.1, + Z98849.1, Z98944.1, Z98974.2, Z98975.1, Z98977.4, Z98978.1, + Z98979.1, Z98980.1, Z98981.3, Z99091.2, Z99126.1, Z99161.1, + Z99162.1, Z99163.2, Z99164.2, Z99165.1, Z99166.1, Z99167.1, + Z99168.1, Z99258.1, Z99259.1, Z99260.2, Z99261.1, Z99262.1, + Z99292.1, Z99295.1, Z99296.2, Z99531.1, Z99532.2, Z99568.2, + Z99753.1. +FEATURES Location/Qualifiers + source 1..4538 + /organism="Schizosaccharomyces pombe" + /mol_type="genomic DNA" + /strain="972h-" + /db_xref="taxon:4896" + /chromosome="I" + gene <1..676 + /locus_tag="SPOM_SPAPB1A10.08" + CDS <1..393 + /locus_tag="SPOM_SPAPB1A10.08" + /codon_start=1 + /product="conserved fungal protein" + /protein_id="CAC21481.2" + /translation="MMTRMELRPLEIGFSKALTEVAPVTCQCECWDHNLCSSQASEMDL + IYQSQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKSQLDRFLSSS + KKLHNDDVNRGDYCFLLSTPVECSASTNSHSYDCLWNFSCNSFPEYSSYSASETSSVAS + YSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHNHPLSK + SLEEQSSFLEQSKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIM + SLSRNIIRRVFHKPEVHLDPSASILNLSSSHGESNLTNGLLCQNFKLFQDDWLMEDCAP + DANFTLYTPLQPWEKRSVKPEIRRPRLNPNFFRVFVLEAQMRRAGKLSANTAGRAQLIY + LPKPAVTFSTSPLHVEL" + gene complement(<1..1972) + /locus_tag="SPOM_SPNCRNA.2846" + ncRNA complement(<1..1972) + /ncRNA_class="lncRNA" + /locus_tag="SPOM_SPNCRNA.2846" + /product="non-coding RNA" + 3'UTR 394..676 + /locus_tag="SPOM_SPAPB1A10.08" + gene 1001..3538 + /gene="ase1" + /locus_tag="SPOM_SPAPB1A10.09" + 5'UTR 1001..1173 + /gene="ase1" + /locus_tag="SPOM_SPAPB1A10.09" + CDS join(1174..1597,1645..3416) + /gene="ase1" + /locus_tag="SPOM_SPAPB1A10.09" + /codon_start=1 + /product="antiparallel microtubule cross-linking factor + Ase1" + /protein_id="CAC21482.1" + /translation="MQTVMMDDIQSTDSIAEKDNHSNNESNFTWKAFREQVEKHFSKIE + RLHQVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIRFLVSSLKLTD + DTSSLKIESPLIQCLNRLSMVEGQYMAQYDQKLSTIKEMYHKLESYCNRLGSPFVLPDF + ENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYE + QLLESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP + NEQSQFGDSSNINQENISLWETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQ + RKSFTPMYEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLIEGKKELEASSN + DASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQSLLIPEITAWEERNGRTFLFYDEPL + LKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMT + SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIR + QGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSK + NVPLSPPKQRVVNEHALNIMSEKLQRTNLKEQTPEMDIENSSQNLPFSPMKISPIRASP + VKTIPSSPSPTTNIFSAPLNNITNCTPMEDEWGEEGF" + 3'UTR 3417..3538 + /gene="ase1" + /locus_tag="SPOM_SPAPB1A10.09" + gene complement(3510..>4538) + /gene="ypt71" + /locus_tag="SPOM_SPAPB1A10.10C" + 3'UTR complement(3510..3690) + /gene="ypt71" + /locus_tag="SPOM_SPAPB1A10.10C" + CDS complement(join(3691..4137,4192..>4290)) + /gene="ypt71" + /locus_tag="SPOM_SPAPB1A10.10C" + /codon_start=1 + /product="GTPase Ypt71" + /protein_id="CAC21483.1" + /translation="MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADF + LTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQ + EFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENT + NVTDLFETVSRLALENESSRDDFVNDFSEPLLLSKPLNNTSSCNC" + gene 4049..>4538 + /locus_tag="SPOM_SPNCRNA.2847" + ncRNA 4049..>4538 + /ncRNA_class="lncRNA" + /locus_tag="SPOM_SPNCRNA.2847" + /product="non-coding RNA" +ORIGIN + 1 atcatcagac gtgtatttca caagccagaa gtgcatttgg atccaagtgc ctccatttta + 61 aatctctcat cttcgcatgg cgaaagcaac ctgacaaatg gtttgctttg tcaaaatttc + 121 aagctttttc aggatgattg gttgatggag gattgtgcgc cagatgccaa tttcactttg + 181 tacaccccgc ttcaaccctg ggaaaagcga agtgtgaaac ctgaaatcag acgtcctcga + 241 ttaaatccta attttttccg agtatttgtt ttagaagctc aaatgcgacg agctggaaag + 301 ctatcagcaa acactgctgg ccgagcccag ttaatttacc tcccaaagcc tgccgttacc + 361 ttctccacta gccctttgca tgttgaattg taaaaattta acgcatgact tatatacatt + 421 tgcattcttc caagctggtt atatttattt tcattttttt ctcacccaat acttttttat + 481 ccctactgtc tttatggaca atcgactcac aattgtttct ttttgttgta tatgattttt + 541 tttttaaagg aaatgggttt cgcgatactg ggttgaatcc caattgcggt taatattaca + 601 taaaataatt ctcccatagt cctagatcct gtctttgaat atgagcaaat aaaagaattg + 661 aacaaatcat gaatgctttt ctctcttaga tgatattttg tatgcataag tctaattata + 721 ttgattacga taagacttaa aaagtaagcc tttgtatcct tttaagcagt atttgaattt + 781 tcttgtatca tattttaggt agagcaaaag ataccagttt gtagaacttt atgtgcttcc + 841 ttacattggt atatttcagg cacataaata ttcttcaact tacaattcta agtattttgt + 901 ttatactaaa aggagctgaa taacgtttat acagtgctga cattgaaatc tatttgcttt + 961 ctttggaata taagcgcatg ctgagttact ttcgcaggcc aagccatatc caaccaccat + 1021 ttttgtgcca agcttttatg caaggttaat tccttgtact gcttgttatg ttataatata + 1081 tcaacatctt aacagttttc atatcttcct ttatattcta ttaattgaat ttcaaacatc + 1141 gttttattga gctcatttac atcaaccggt tcaatgcaaa cagtaatgat ggatgacatt + 1201 caaagcactg attctattgc tgaaaaagat aatcactcta ataatgaatc taactttact + 1261 tggaaagcgt ttcgtgaaca agtggaaaag catttttcta aaattgaaag gcttcaccaa + 1321 gtccttggaa cagatggaga caattcatca ttatttgagt tgtttacaac ggcaatgaat + 1381 gcccagcttc atgaaatgga acagtgccag aaaaaacttg aagatgactg tcagcaaaga + 1441 attgattcaa tcagattttt ggtttcctca ttaaagttaa cggatgatac ttctagtctc + 1501 aaaattgagt ctcctttaat tcagtgtttg aatcgtttgt caatggtaga aggacaatat + 1561 atggcacagt atgatcaaaa gttaagtacg attaaaggta tgtaatcgtc tttaatttag + 1621 acttgtgttt taactgatgt atagaaatgt atcacaaatt ggagtcatat tgtaaccgct + 1681 taggaagtcc gttcgtttta cctgattttg agaattcatt tttatctgat gtatccgatg + 1741 cttttactga atctttgaga ggacgcatca acgaagccga aaaggagatt gatgcgagat + 1801 tagaggttat taattccttt gaagaagaaa ttttgggttt gtggtctgaa ctcggtgttg + 1861 agcccgctga tgttccacaa tacgaacaat tgcttgaatc ccatactaat cgaccaaatg + 1921 atgtttatgt tactcaagaa cttatcgacc aactttgcaa gcaaaaagaa gttttttccg + 1981 ctgaaaaaga aaagagaagt gatcatttaa aaagtataca atcagaagtt agcaacttgt + 2041 ggaataagct tcaagtttct cccaatgaac aaagtcaatt tggcgattca tcaaacatta + 2101 atcaagaaaa tatttcatta tgggaaactg aacttgaaaa acttcatcag ttaaaaaagg + 2161 agcatttacc cattttttta gaagactgtc gtcaacaaat tcttcagctt tgggattctc + 2221 tgttttattc agaagaacaa agaaagtcct ttacacctat gtatgaagac attattacag + 2281 agcaggttct tacggcccat gaaaactata taaagcaact agaggccgaa gtttctgcta + 2341 ataagtcctt tttaagctta attaatcgct atgcctcttt aatagaagga aagaaagagc + 2401 ttgaagctag ttctaatgat gcctctcgtc taacacaacg gggacgccgg gacccaggtt + 2461 tacttctacg tgaagagaaa atccgtaagc gactttctag agaacttcct aaggttcagt + 2521 cgctgcttat accagagatt acagcatggg aagaaagaaa tggaaggacg ttcctttttt + 2581 atgatgaacc acttctcaag atttgccaag aggccactca accaaaatca ttatatagaa + 2641 gtgcaagtgc tgccgcaaac cgcccgaaaa cagcaactac aacggactct gttaatagaa + 2701 caccttctca acgagggcgt gtagctgtac cttcaacacc aagtgttagg tccgcttctc + 2761 gagctatgac gagtccaagg acaccgcttc ctagagtaaa aaacactcaa aatccaagtc + 2821 gttccattag tgcagaaccg ccatcagcaa ccagtaccgc caatagaaga caccccactg + 2881 ctaatcgaat tgatataaac gctagattaa acagtgctag tcggtctcga agcgcgaaca + 2941 tgataagaca aggggcaaat ggtagtgaca gcaatatgtc ttcttcaccc gtttctggaa + 3001 attccaatac cccttttaac aagtttccaa attctgtatc tcgcaataca cattttgaat + 3061 ccaagtcacc gcacccaaat tactctcgaa ctcctcatga aacgtattca aaggcttcat + 3121 ctaagaacgt cccattaagt cctccaaagc agcgtgtagt taatgaacac gctttaaata + 3181 ttatgtcgga aaaattgcaa agaactaatc tgaaagaaca aacacccgag atggacattg + 3241 aaaacagctc gcagaacctt cctttttctc ctatgaagat atcccccata agagcatcac + 3301 ccgtaaagac aattccatca tcaccgtccc ccactaccaa cattttttct gctccactca + 3361 acaatattac aaattgtaca ccgatggagg atgaatgggg agaagaaggc ttttaagctt + 3421 cttatttacc taatcgatca aatttaaata tacatatttt tgcatatgaa tacagcatat + 3481 agataattca taaaagttta ttaactgagg tcataattaa aagactattt acacctaaaa + 3541 aaaaacgtgt atcaatagag ggaaaagaga agaattaaga acagaaagta accatagttt + 3601 tgttaaaata gcaatgtaaa aaaatattat gaaaagaaaa cgtatagcac attttgaaat + 3661 gtaaaagaat ctgagagagc gtgtgaatat ctagcaatta caagaagatg tattattcaa + 3721 aggctttgaa agaagcaaag gttcagagaa gtcattaaca aagtcatctc tcgagctttc + 3781 attttctaaa gctaaacgac tgactgtttc gaaaaggtca gtaacgtttg tattttcttt + 3841 tgcactagct tcaaaatgaa tcatatttga tccatgtttg gatttgcaat agtcaagagc + 3901 tcgatgaaga gatacggctc gtttagacgc gtctttgtcg atttgatttc caacgataat + 3961 gaaagggaat gcacattcat cttgtgaagt ttgatataaa aattcttgcc tccagttttc + 4021 tactgagtca aaagacttcg agttattcac attataaaca attacacaac aatcggcccc + 4081 tctgtaaaaa gccattccca ggctttgaaa tcgttcttga ccagcagtat cccaaagctg + 4141 tttataatta gcaaacgaat ttagatgggc ggaacttata ttggaactta cctgtaatgt + 4201 gaccaatttg tcgtcaacca caacgtcctt ggttaaaaaa tcagcaccga tggtagcttt + 4261 atattcgcga ctaaactttt gattgacgaa ctaaaatgac gatgttaaca aattgccaaa + 4321 gcaatactca tagagaagct gatgtaaaga tcgttaacca tatttgagct agtatttaat + 4381 aacaaagtga ataaatttta aaagcaatca ccttgtagcg acaaataaca acttatcgac + 4441 ataaaatcaa tgggaaattg cagtattgga ttttacagct caatacaaaa accaaaaaga + 4501 aaaatatact gaacgtataa aatttaacgc ttcaattg +// \ No newline at end of file diff --git a/docs/notebooks/Dseq.ipynb b/docs/notebooks/Dseq.ipynb new file mode 100644 index 00000000..ffa836b9 --- /dev/null +++ b/docs/notebooks/Dseq.ipynb @@ -0,0 +1,797 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Representing sequences in pydna\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Pydna contains classes to represent double stranded DNA sequences that can:\n", + "\n", + "* Be linear\n", + "* Be circular\n", + "* Contain overhangs (sticky ends).\n", + "\n", + "These sequences can be used to simulate molecular biology methods such as cloning and PCR. The main classes used to represent sequences are `Dseq` and `Dseqrecord`.\n", + "* `Dseq` represents the sequence only. Think of it as a FASTA file.\n", + "* `Dseqrecord` can contain sequence features and other info such as publication, authors, etc. Think of it as a Genbank file.\n", + "\n", + "> NOTE: The `Dseq` class is a subclass of biopython's `Seq`, whose documentation can be found [here](https://biopython.org/wiki/Seq). `Dseqrecord` is a subclass of biopython's `SeqRecord`, whose documentation can be found [here](https://biopython.org/wiki/SeqRecord)." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + "## Dseq Class\n", + "\n", + "We can create a `Dseq` object in different ways.\n", + "\n", + "For a linear sequence without overhangs, we create a `Dseq` object passing a string with the sequence. For example:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-5)\n", + "aatat\n", + "ttata" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.dseq import Dseq\n", + "my_seq = Dseq(\"aatat\")\n", + "my_seq" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "In the console representation above, there are three lines:\n", + "1. `Dseq(-5)` indicates that the sequence is linear and has 5 basepairs.\n", + "2. `aatat`, the top / sense / watson strand, referred from now on as **watson** strand..\n", + "3. `ttata`, the bottom / anti-sense / crick strand, referred from now on as **crick** strand.\n", + "\n", + "Now, let's create a circular sequence:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(o5)\n", + "aatat\n", + "ttata" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq(\"aatat\", circular=True)\n", + "my_seq" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "> Note how `o5` indicates that the sequence is circular and has 5 basepairs.\n", + "\n", + "One way to represent a linear sequence with overhangs is to instantiate `Dseq` with the following arguments:\n", + "* The `watson` strand as a string in the 5'-3' direction.\n", + "* The `crick` strand as a string in the 5'-3' direction.\n", + "* The 5' overhang `ovhg` (overhang), which can be positive or negative, and represents the number of basepairs that the `watson` strand extends beyond the `crick` strand." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-5)\n", + "actag\n", + " gatc" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq(\"actag\", \"ctag\", -1)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "> Note how the bottom strand is passed in the 5'-3' direction, but it is represented in the 3'-5' direction in the console output.\n", + "\n", + "If you omit the `ovhg` argument, pydna will try to find the value that makes the `watson` and `crick` strands complementary." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-5)\n", + "actag\n", + " gatc" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq(\"actag\", \"ctag\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The best way to get a feeling for the meaning of `ovhg` is to visualise the possible scenarios as such:\n", + "\n", + "```\n", + "dsDNA overhang\n", + "\n", + " nnn... 2\n", + "nnnnn...\n", + "\n", + " nnnn... 1\n", + "nnnnn...\n", + "\n", + "nnnnn... 0\n", + "nnnnn...\n", + "\n", + "nnnnn... -1\n", + " nnnn...\n", + "\n", + "nnnnn... -2\n", + " nnn...\n", + "```" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Of note, the DNA sequence can be passed in both lower case and upper case, and are not restricted to the conventional ATCG nucleotides (E.g ), The class supports the IUPAC ambiguous nucleotide code." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-5)\n", + "Actag\n", + " gatC" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq(\"Actag\", \"Ctag\", -1)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Another way to pass the overhangs is to use the `from_full_sequence_and_overhangs` classmethod, which only needs the `watson`/sense strand. This is useful you can only store the entire sequence (e.g. in a FASTA file), or if you want to specify overhangs on both sides of the double stranded DNA when you create the object.\n", + "\n", + "Both the `watson_ovhg` and `crick_ovhg` can be passed following the same rules as above. Specifically, the `crick_ovhg` argument is identical to the conventional `ovhg` argument. The `watson_ovhg` argument is the `ovhg` argument applied to the reverse complementary sequence." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-8)\n", + "aaatta\n", + " aattt" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq.from_full_sequence_and_overhangs(\"aaattaaa\", crick_ovhg=-3, watson_ovhg=-2)\n", + "my_seq" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "A list of possible scenarios, applying positive and negative `crick_ovhg` and `watson_ovhg` to a `Dseq` object are visualised in the output of the code below:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "watson_ovhg is -3, crick_ovhg is -2\n", + "Dseq(-8)\n", + "aaatt\n", + " taattt\n", + "\n", + "watson_ovhg is 3, crick_ovhg is -2\n", + "Dseq(-8)\n", + "aaattaaa\n", + " taa\n", + "\n", + "watson_ovhg is -3, crick_ovhg is 2\n", + "Dseq(-8)\n", + " att\n", + "tttaattt\n", + "\n", + "watson_ovhg is 3, crick_ovhg is 2\n", + "Dseq(-8)\n", + " attaaa\n", + "tttaa\n", + "\n" + ] + } + ], + "source": [ + "for crick_ovhg in [-2, 2]:\n", + " for watson_ovhg in [-3, 3]:\n", + " print(\"watson_ovhg is \" + str(watson_ovhg) + \", crick_ovhg is \" + str(crick_ovhg))\n", + " my_seq = Dseq.from_full_sequence_and_overhangs(\"aaattaaa\", crick_ovhg, watson_ovhg)\n", + " print(my_seq.__repr__() + \"\\n\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The drawing below can help visualize the meaning of the overhangs.\n", + "```\n", + " (-3)--(-2)--(-1)--(x)--(x)--(x)--(-1)--(-2)\n", + "\n", + "5'( a)--( a)--( a)--(t)--(t)--(a)--( a)--( a)3'\n", + "3'( a)--( a)--( a)--(t)--(t)--(a)--( a)--( a)5'\n", + "\n", + "5'( a)--( a)--( a)--(t)--(t)--(a)--( )--( )3'\n", + "3'( )--( )--( )--(t)--(t)--(a)--( a)--( a)5'\n", + "```" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "If you would like to check the overhangs for a `Dseq` object, it can be done by calling the methods `five_prime_end` and `three_prime_end` to show the 5' and 3' overhangs, respectively. An example of a `Dseq` object, and examples showing what the print-out of the methods looks like are demonstrated here:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseq(-7)\n", + "aatat\n", + " atatt\n", + "(\"5'\", 'aa')\n", + "(\"5'\", 'tt')\n" + ] + } + ], + "source": [ + "my_seq = Dseq(\"aatat\", \"ttata\", ovhg=-2)\n", + "print(my_seq.__repr__())\n", + "print(my_seq.five_prime_end())\n", + "print(my_seq.three_prime_end())" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "If you now want to join your sequence's sticky ends to make a circular sequence (i.e Plasmid), you can use the `looped` method. The sticky ends must be compatible to do so.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(o5)\n", + "aatat\n", + "ttata" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq(\"aatat\", \"ttata\", ovhg=-2)\n", + "my_seq.looped()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "If you want to change the circular origin of the sequence/plasmid, this can be easily done using the `shifted` method. This can be done by providing the number of bases between the original origin with the new origin: " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(o5)\n", + "tataa\n", + "atatt" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq(\"aatat\", circular=True)\n", + "my_seq.shifted(2)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## __getitem__, __repr__, and __str__ methods\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Slicing sequences (`__getitem__`)\n", + "\n", + "`__getitem__` is the method that is called when you use the square brackets `[]` after a python object. Below is an example of the builtin python `list`:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "using square brackets: [2, 3]\n", + "is the same as using __getitem__: [2, 3]\n" + ] + } + ], + "source": [ + "my_list = [1, 2, 3]\n", + "\n", + "print('using square brackets:', my_list[1:])\n", + "print('is the same as using __getitem__:', my_list.__getitem__(slice(1, None)))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The `__getitem__` method is modified in pydna to deal with `Dseq` objects and returns a slice of the `Dseq` object, defined by the a start value and a stop value, similarly to string indexing. In other words, `__getitem__` indexes `Dseq`. Note that '__getitem__' (and, consequently, `[]`) uses zero-based indexing." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-3)\n", + "tat\n", + "ata" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq(\"aatataa\")\n", + "my_seq[2:5]\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "`__getitem__` respects overhangs." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-5)\n", + "tata\n", + "atatt" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "my_seq = Dseq.from_full_sequence_and_overhangs(\"aatataa\", crick_ovhg=0, watson_ovhg=-1)\n", + "my_seq[2:]" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Note that index zero corresponds to the leftmost base of the sequence, which might not necessarily be on the `watson` strand. Let's create a sequence that has an overhang on the left side." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-10)\n", + " acgttcc\n", + "ttatgcaagg" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "sequence_with_overhangs = Dseq.from_full_sequence_and_overhangs(\"aatacgttcc\", crick_ovhg=3, watson_ovhg=0)\n", + "sequence_with_overhangs" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "When we index starting from `2`, we don't start counting on the watson, but on the crick strand since it is the leftmost one." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-8)\n", + " acgttcc\n", + "atgcaagg" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "sequence_with_overhangs[2:]" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Slicing circular sequences\n", + "When slicing circular `Dseq` objects we get linear sequences." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-4)\n", + "atct\n", + "taga" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "circular_seq = Dseq(\"aatctaa\", circular=True)\n", + "circular_seq[1:5]" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We can slice circular sequences across the origin (where index is zero) if the first index is bigger than the second index. This is demonstrated in the example below:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-4)\n", + "aaaa\n", + "tttt" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "circular_seq[5:2]" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Printing sequences to the console: `__repr__` and `__str__`" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "`__repr__` and `__str__` are methods present in all python classes that return a string representation of an object. `__str__` is called by the `print` function, and `__repr__` is used by the console or notebook output when the object is not assigned to a variable. Below is an example with a `date` object:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "> print statement: 2023-08-15\n", + "> repr: datetime.date(2023, 8, 15)\n", + "> repr from class method: datetime.date(2023, 8, 15)\n", + "\n", + "> console output:\n" + ] + }, + { + "data": { + "text/plain": [ + "datetime.date(2023, 8, 15)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "import datetime\n", + "\n", + "my_date = datetime.date(2023, 8, 15)\n", + "\n", + "print('> print statement:', my_date)\n", + "print('> repr:', repr(my_date))\n", + "print('> repr from class method:', my_date.__repr__())\n", + "\n", + "print()\n", + "print('> console output:')\n", + "my_date" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "In a similar way, `__repr__` and `__str__` methods are used by pydna to represent sequences as strings for different purposes:\n", + "\n", + "* `__repr__` is used to make a figure-like representation that shows both strands and the overhangs.\n", + "* `__str__` is used to return the entire sequence as a string of characters (from the left-most to the right-most base of both strands), the way we would store it in a FASTA file.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "> figure-like representation:\n", + " Dseq(-8)\n", + "aaatta\n", + " aattt\n", + "\n", + "> string representation:\n", + " aaattaaa\n" + ] + } + ], + "source": [ + "my_seq = Dseq.from_full_sequence_and_overhangs(\"aaattaaa\", crick_ovhg=-3, watson_ovhg=-2)\n", + "print('> figure-like representation:\\n', my_seq.__repr__())\n", + "print()\n", + "print('> string representation:\\n', my_seq)\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Note that on the string representation, the bases correspond to the entire sequence provided, even when they are only present on either the `watson` or `crick` strand. In the example above, the last two `aa` bases are missing from the `watson` strand, and that only the `crick` strand has them." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Edge cases\n", + "\n", + "You can create arbitrary double-stranded sequences that are not complementary if you specify both strands and an overhang, but you won't be able to use them for molecular biology simulations. For example:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-6)\n", + " xxxx\n", + "tata" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq(\"xxxx\", \"atat\", ovhg=2)" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Dseq_Features.ipynb b/docs/notebooks/Dseq_Features.ipynb new file mode 100644 index 00000000..90e50d14 --- /dev/null +++ b/docs/notebooks/Dseq_Features.ipynb @@ -0,0 +1,821 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Working with Features using the Dseqrecord class\n", + "\n", + "> Before working with features, check how to import sequences from files in the [Importing_Seqs notebook](./Importing_Seqs.ipynb).\n", + ">\n", + "> For full library documentation, visit [here](https://bjornfjohansson.github.io/pydna/).\n", + "\n", + "Some sequence file formats (like Genbank) include features, describing key biological properties of sequence regions. In Genbank, features \"include genes, gene products, as well as regions of biological significance reported in the sequence.\" (See [here](https://www.ncbi.nlm.nih.gov/genbank/samplerecord/) for a description of a Genbank file and associated terminologies/annotations) Examples include coding sequences (CDS), introns, promoters, etc.\n", + "\n", + "pydna offers many ways to easily view, add, extract, and write features into a Genbank file via the `Dseqrecord` class. After reading a file into a `Dseqrecord` object, we can check out the list of features in the record using the following code. This example uses the sample record [U49845](https://www.ncbi.nlm.nih.gov/genbank/samplerecord/)." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: source\n", + "location: [0:5028](+)\n", + "qualifiers:\n", + " Key: chromosome, Value: ['IX']\n", + " Key: db_xref, Value: ['taxon:4932']\n", + " Key: mol_type, Value: ['genomic DNA']\n", + " Key: organism, Value: ['Saccharomyces cerevisiae']\n", + "\n", + "type: mRNA\n", + "location: [<0:>206](+)\n", + "qualifiers:\n", + " Key: product, Value: ['TCP1-beta']\n", + "\n", + "type: CDS\n", + "location: [<0:206](+)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['3']\n", + " Key: product, Value: ['TCP1-beta']\n", + " Key: protein_id, Value: ['AAA98665.1']\n", + " Key: translation, Value: ['SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM']\n", + "\n", + "type: gene\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + "\n", + "type: mRNA\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + " Key: product, Value: ['Axl2p']\n", + "\n", + "type: CDS\n", + "location: [686:3158](+)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['1']\n", + " Key: gene, Value: ['AXL2']\n", + " Key: note, Value: ['plasma membrane glycoprotein']\n", + " Key: product, Value: ['Axl2p']\n", + " Key: protein_id, Value: ['AAA98666.1']\n", + " Key: translation, Value: ['MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML']\n", + "\n", + "type: gene\n", + "location: [<3299:>4037](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['REV7']\n", + "\n", + "type: mRNA\n", + "location: [<3299:>4037](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['REV7']\n", + " Key: product, Value: ['Rev7p']\n", + "\n", + "type: CDS\n", + "location: [3299:4037](-)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['1']\n", + " Key: gene, Value: ['REV7']\n", + " Key: product, Value: ['Rev7p']\n", + " Key: protein_id, Value: ['AAA98667.1']\n", + " Key: translation, Value: ['MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF']\n", + "\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.parsers import parse\n", + "\n", + "#Import your file into python. \n", + "file_path = \"./U49845.gb\"\n", + "records = parse(file_path)\n", + "sample_record = records[0]\n", + "\n", + "# List all features\n", + "for feature in sample_record.features:\n", + " print(feature)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Additional ways to view and search for particular features are shown at the bottom of the page under \"Other Methods to Viewing Features\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Adding Features and Qualifiers\n", + "\n", + "To add new feature to describe a region of interest to a record, for instance a region that you would like to perform a PCR, you need to create a `SeqFeature` (sequence feature). The minimal information required is:\n", + "* A `FeatureLocation`: position of the feature in the sequence.\n", + "* The `type` of feature you want to add.\n", + "\n", + "\n", + "๐Ÿšจ๐Ÿšจ **VERY IMPORTANT** ๐Ÿšจ๐Ÿšจ. Note that `FeatureLocation`s are like python ranges (zero-based open intervals), whereas in GenBank files, locations are one-based closed intervals. For instance, the following code adds a new feature from the 2nd to the 5th nucleotide (`FeatureLocation(3, 15)`), of the `gene` type, but in the GenBank file will be represented as `4..15`." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: gene\n", + "location: [3:15]\n", + "qualifiers:\n", + "\n", + "LOCUS name 19 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 4..15\n", + "ORIGIN\n", + " 1 aaaatgcgta cgtgaacgt\n", + "//\n" + ] + } + ], + "source": [ + "from Bio.SeqFeature import FeatureLocation, SeqFeature\n", + "\n", + "# Create a dummy record\n", + "dummy_record = Dseqrecord(\"aaaATGCGTACGTGAacgt\")\n", + "\n", + "# Define the locations of a CDS\n", + "location = FeatureLocation(3, 15)\n", + "\n", + "# Create a SeqFeature with the type mRNA\n", + "my_feature = SeqFeature(location=location, type=\"gene\")\n", + "\n", + "# Add my_feature to dummy_record with .append\n", + "dummy_record.features.append(my_feature)\n", + "\n", + "# Confirm that my_feature has been added\n", + "print(dummy_record.features[-1])\n", + "\n", + "# Print the feature in GenBank format (see how the location is `4..15`)\n", + "print(dummy_record.format(\"genbank\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "To give further information about a feature, we can add a qualifier using the `qualifiers` property of `SeqFeature`, which contains a dictionary of qualifiers. For instance, if I would like to note a new feature of type 'domain', between 3-9 bases as my region of interest, I can instantiate the `SeqFeature` class object as such.\n", + "\n", + "> Note that a new feature is always added to the last position of the features list." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + ">> Feature was added:\n", + "type: domain\n", + "location: [3:9]\n", + "qualifiers:\n", + " Key: Note, Value: ['Region of interest']\n", + "\n", + "\n", + ">> GenBank format:\n", + "LOCUS name 19 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 4..15\n", + " domain 4..9\n", + " /Note=\"Region of interest\"\n", + "ORIGIN\n", + " 1 aaaatgcgta cgtgaacgt\n", + "//\n" + ] + } + ], + "source": [ + "location = FeatureLocation(3, 9)\n", + "\n", + "# Create a SeqFeature with a qualifier\n", + "my_feature2 = SeqFeature(location=location, type=\"domain\", qualifiers={\"Note\": [\"Region of interest\"]})\n", + "\n", + "# Add my_feature to my_record with .append\n", + "dummy_record.features.append(my_feature2)\n", + "\n", + "# Confirm that my_feature has been added\n", + "print('>> Feature was added:')\n", + "print(dummy_record.features[-1])\n", + "print()\n", + "\n", + "# Print the feature in GenBank format\n", + "print('>> GenBank format:')\n", + "print(dummy_record.format(\"genbank\"))\n", + "\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "**๐Ÿค” Best practices for qualifiers:**\n", + "\n", + "The values in the `qualifiers` dictionary should be lists. The reason for this is that in a GenBank file, a single feature can have multiple values for a single qualifier. Below is a real world of the ase1 CDS example from the _S. pombe_ genome in EMBL format:\n", + "\n", + "```\n", + "FT CDS join(1878362..1878785,1878833..1880604)\n", + "FT /colour=2\n", + "FT /primary_name=\"ase1\"\n", + "FT /product=\"antiparallel microtubule cross-linking factor\n", + "FT Ase1\"\n", + "FT /systematic_id=\"SPAPB1A10.09\"\n", + "FT /controlled_curation=\"term=species distribution, conserved\n", + "FT in eukaryotes; date=20081110\"\n", + "FT /controlled_curation=\"term=species distribution, conserved\n", + "FT in metazoa; date=20081110\"\n", + "FT /controlled_curation=\"term=species distribution, conserved\n", + "FT in vertebrates; date=20081110\"\n", + "FT /controlled_curation=\"term=species distribution,\n", + "FT predominantly single copy (one to one); date=20081110\"\n", + "FT /controlled_curation=\"term=species distribution, conserved\n", + "FT in fungi; date=20081110\"\n", + "FT /controlled_curation=\"term=species distribution, conserved\n", + "FT in eukaryotes only; date=20081110\"\n", + "```\n", + "\n", + "Note how there are several `controlled_curation` qualifiers, therefore it makes sense to store them as a list.\n", + "\n", + "By default, you can add any type of object in the qualifiers dictionary, and most things will work if you add a string. However, you risk overwriting the existing value for a qualifier, so best practice is:\n", + "1. Check if the qualifier already exists using `if \"qualifier_name\" in feature.qualifiers`\n", + "2. If it exists, append to the existing list of values using `feature.qualifiers[\"qualifier_name\"].append(\"new_value\")`\n", + "3. If it does not exist, add it to the qualifiers dictionary using `feature.qualifiers[\"qualifier_name\"] = [\"new_value\"]`" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Note that `Bio.SeqFeatures` does not automatically assume a sequence strand for the feature. If you would like to refer to a feature on the positive or minus strand, you can add a parameter in `FeatureLocation` specifying `strand=+1` or `strand=-1`. " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: domain\n", + "location: [15:19](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['example_domain']\n", + "\n", + "LOCUS name 19 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 4..15\n", + " domain 4..9\n", + " /Note=\"Region of interest\"\n", + " domain complement(16..19)\n", + " /gene=\"example_domain\"\n", + "ORIGIN\n", + " 1 aaaatgcgta cgtgaacgt\n", + "//\n" + ] + } + ], + "source": [ + "#Create a location specifying the minus strand\n", + "location = FeatureLocation(15, 19, strand=-1)\n", + "\n", + "my_feature3 = SeqFeature(location=location, type=\"domain\", qualifiers={\"gene\":[\"example_domain\"]})\n", + "\n", + "dummy_record.features.append(my_feature3)\n", + "\n", + "print(dummy_record.features[-1])\n", + "\n", + "print(dummy_record.format(\"genbank\"))\n", + "\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Adding a Feature with Parts\n", + "\n", + "To add a feature with parts, like a CDS with introns, we need to use a `CompoundLocation` object when creating a `SeqFeature`.\n", + "\n", + "The example code below adds a CDS with two parts, between 3-9bp and 12-15bp, to my features list. In a real-world scenario this would represent a CDS with an intron that skips the `ACG` codon: ATGCGT~~ACG~~TGA" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: CDS\n", + "location: join{[3:9], [12:15]}\n", + "qualifiers:\n", + " Key: gene, Value: ['example_gene']\n", + "\n", + "LOCUS name 19 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 4..15\n", + " domain 4..9\n", + " /Note=\"Region of interest\"\n", + " domain complement(16..19)\n", + " /gene=\"example_domain\"\n", + " CDS join(4..9,13..15)\n", + " /gene=\"example_gene\"\n", + "ORIGIN\n", + " 1 aaaatgcgta cgtgaacgt\n", + "//\n" + ] + } + ], + "source": [ + "from Bio.SeqFeature import CompoundLocation\n", + "\n", + "# Define the locations of the CDS\n", + "locations = [FeatureLocation(3, 9), FeatureLocation(12, 15)]\n", + "\n", + "# Create a compound location from these parts\n", + "compound_location = CompoundLocation(locations)\n", + "\n", + "# Create a SeqFeature with this compound location, including type and qualifiers. \n", + "cds_feature = SeqFeature(location=compound_location, type=\"CDS\", qualifiers={\"gene\": [\"example_gene\"]})\n", + "\n", + "# Add the feature to the Dseqrecord\n", + "dummy_record.features.append(cds_feature)\n", + "\n", + "print(dummy_record.features[-1])\n", + "\n", + "print(dummy_record.format(\"genbank\"))\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We can even extract a protein record as follows (see how the protein sequence is `MR`, skipping the intron):" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "ProteinSeq('MR')\n" + ] + } + ], + "source": [ + "sub_record = dummy_record.features[-1].extract(dummy_record)\n", + "\n", + "print(sub_record.translate())\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Standard Feature Types and Qualifiers\n", + "\n", + "`pydna` and `Bio.SeqFeature` suppports all the conventional feature types through the `type` parameters. A non-exhaustive list include gene, CDS, promoter, exon, intron, 5' UTR, 3' UTR, terminator, enhancer, and RBS. You can also define custom features, which could be useful for synthetic biology applications. For instance, you might want to have Bio_brick or spacer features to describe a synthetic standardised plasmid construct. \n", + "\n", + "It is important to note that while `pydna` and `Bio.SeqFeature` does not restrict the feature types you can use, sticking to standard types helps maintain compatibility with other bioinformatics tools and databases. Please refer to the official [GenBank_Feature_Table](https://www.insdc.org/submitting-standards/feature-table/#2), that lists the standard feature types and their associated qualifiers." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Further documentation for `SeqFeature`, `CompoundLocation`, and `FeatureLocation` can be found in the `SeqFeature` module [here](https://biopython.org/docs/1.75/api/Bio.SeqFeature.html). " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Handling Origin Spanning Features\n", + "\n", + "An origin spanning feature is a special type of feature that crosses over a circular sequence's origin. In pydna, such a feature is represented as a feature with parts, joining the part of the sequence immediately before the origin and immediately after the origin. They can be added using `CompoundLocation` as normal. \n", + "\n", + "An origin spanning feature, between base 19 to base 6, in a 25bp long circular sequence, is represented like so: \n", + "\n", + "```\n", + "type: gene \n", + "location: join{[19:25](+), [0:6](+)} \n", + "qualifiers: gene, Value: example_gene \n", + "```\n", + "\n", + "This feature will be displayed as a single feature in SnapGene viewer and Benchling, since they support this convention." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + ">> Feature:\n", + "type: misc\n", + "location: join{[19:25], [0:6]}\n", + "qualifiers:\n", + " Key: gene, Value: ['example origin spanning gene']\n", + "\n", + ">> Feature sequence:\n", + "ATGCGTACGTGA\n", + "\n", + ">> GenBank format:\n", + "LOCUS name 25 bp DNA circular UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " misc join(20..25,1..6)\n", + " /gene=\"example origin spanning gene\"\n", + "ORIGIN\n", + " 1 acgtgaaaaa aaaaaaaaaa tgcgt\n", + "//\n" + ] + } + ], + "source": [ + "circular_record = Dseqrecord('ACGTGAaaaaaaaaaaaaaATGCGT', circular=True)\n", + "\n", + "location = [FeatureLocation(19,25), FeatureLocation(0, 6)]\n", + "ori_feat_location = CompoundLocation(location)\n", + "ori_feature = SeqFeature(location=ori_feat_location, type=\"misc\", qualifiers={\"gene\": [\"example origin spanning gene\"]})\n", + "circular_record.features.append(ori_feature)\n", + "\n", + "print('>> Feature:')\n", + "print(circular_record.features[-1])\n", + "\n", + "# Note how the feature sequence is extracted properly across the origin.\n", + "print('>> Feature sequence:')\n", + "print(circular_record.features[-1].extract(circular_record).seq)\n", + "print()\n", + "\n", + "print('>> GenBank format:')\n", + "print(circular_record.format(\"genbank\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Other Methods to Viewing Features\n", + "\n", + "pydna also provides the `list_features` method as a simple way to list all the features in a `Dseqrecord` object. " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "+-----+------------------+-----+-------+-------+------+--------+------+\n", + "| Ft# | Label or Note | Dir | Sta | End | Len | type | orf? |\n", + "+-----+------------------+-----+-------+-------+------+--------+------+\n", + "| 0 | nd | --> | 0 | 5028 | 5028 | source | no |\n", + "| 1 | nd | --> | <0 | >206 | 206 | mRNA | no |\n", + "| 2 | nd | --> | <0 | 206 | 206 | CDS | no |\n", + "| 3 | nd | --> | <686 | >3158 | 2472 | gene | yes |\n", + "| 4 | nd | --> | <686 | >3158 | 2472 | mRNA | yes |\n", + "| 5 | N:plasma membran | --> | 686 | 3158 | 2472 | CDS | yes |\n", + "| 6 | nd | <-- | <3299 | >4037 | 738 | gene | yes |\n", + "| 7 | nd | <-- | <3299 | >4037 | 738 | mRNA | yes |\n", + "| 8 | nd | <-- | 3299 | 4037 | 738 | CDS | yes |\n", + "+-----+------------------+-----+-------+-------+------+--------+------+\n" + ] + } + ], + "source": [ + "print(sample_record.list_features())" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "This method is convenient for checking-out a brief overview of each feature, without reading through an entire sequence record.\n", + "\n", + "Alternatively, we can look for specific features using their qualifiers. For instance:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Getting all CDS features:\n", + "type: CDS\n", + "location: [<0:206](+)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['3']\n", + " Key: product, Value: ['TCP1-beta']\n", + " Key: protein_id, Value: ['AAA98665.1']\n", + " Key: translation, Value: ['SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM']\n", + "\n", + "type: CDS\n", + "location: [686:3158](+)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['1']\n", + " Key: gene, Value: ['AXL2']\n", + " Key: note, Value: ['plasma membrane glycoprotein']\n", + " Key: product, Value: ['Axl2p']\n", + " Key: protein_id, Value: ['AAA98666.1']\n", + " Key: translation, Value: ['MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML']\n", + "\n", + "type: CDS\n", + "location: [3299:4037](-)\n", + "qualifiers:\n", + " Key: codon_start, Value: ['1']\n", + " Key: gene, Value: ['REV7']\n", + " Key: product, Value: ['Rev7p']\n", + " Key: protein_id, Value: ['AAA98667.1']\n", + " Key: translation, Value: ['MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF']\n", + "\n" + ] + } + ], + "source": [ + "# Filter based on feature type\n", + "print('Getting all CDS features:')\n", + "cds_features = [f for f in sample_record.features if f.type == \"CDS\"]\n", + "for feature in cds_features:\n", + " print(feature)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: gene\n", + "location: [<3299:>4037](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['REV7']\n", + "\n" + ] + } + ], + "source": [ + "# Find a particular feature by its qualifier (e.g. gene name)\n", + "rev7_cds_feature = next(f for f in sample_record.features if \n", + " f.type == \"gene\" and\n", + " \"gene\" in f.qualifiers and \"REV7\" in f.qualifiers[\"gene\"]\n", + " )\n", + "\n", + "print(rev7_cds_feature)\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "If you would like to search for another type of features, simply replace the `\"gene\"` with your desired feature type in quotation marks." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Removing Features\n", + "\n", + "In pydna, we can search for the feature that we would like to remove using the feature's types or qualififers. For instance, we can modify the features list to exclude all CDS:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: source\n", + "location: [0:5028](+)\n", + "qualifiers:\n", + " Key: chromosome, Value: ['IX']\n", + " Key: db_xref, Value: ['taxon:4932']\n", + " Key: mol_type, Value: ['genomic DNA']\n", + " Key: organism, Value: ['Saccharomyces cerevisiae']\n", + "\n", + "type: mRNA\n", + "location: [<0:>206](+)\n", + "qualifiers:\n", + " Key: product, Value: ['TCP1-beta']\n", + "\n", + "type: gene\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + "\n", + "type: mRNA\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + " Key: product, Value: ['Axl2p']\n", + "\n", + "type: gene\n", + "location: [<3299:>4037](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['REV7']\n", + "\n", + "type: mRNA\n", + "location: [<3299:>4037](-)\n", + "qualifiers:\n", + " Key: gene, Value: ['REV7']\n", + " Key: product, Value: ['Rev7p']\n", + "\n" + ] + } + ], + "source": [ + "#Remove all CDS type features from my feature list\n", + "sample_record.features = [f for f in sample_record.features if not (f.type == \"CDS\")]\n", + "\n", + "for feature in sample_record.features:\n", + " print(feature)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We can also modify the features list to exclude a specific gene:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "type: source\n", + "location: [0:5028](+)\n", + "qualifiers:\n", + " Key: chromosome, Value: ['IX']\n", + " Key: db_xref, Value: ['taxon:4932']\n", + " Key: mol_type, Value: ['genomic DNA']\n", + " Key: organism, Value: ['Saccharomyces cerevisiae']\n", + "\n", + "type: mRNA\n", + "location: [<0:>206](+)\n", + "qualifiers:\n", + " Key: product, Value: ['TCP1-beta']\n", + "\n", + "type: gene\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + "\n", + "type: mRNA\n", + "location: [<686:>3158](+)\n", + "qualifiers:\n", + " Key: gene, Value: ['AXL2']\n", + " Key: product, Value: ['Axl2p']\n", + "\n" + ] + } + ], + "source": [ + "#Exclude REV7 from my feature list\n", + "sample_record.features = [f for f in sample_record.features if not ('gene' in f.qualifiers and 'REV7' in f.qualifiers['gene'])]\n", + "\n", + "for feature in sample_record.features:\n", + " print(feature)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Example_CRISPR.ipynb b/docs/notebooks/Example_CRISPR.ipynb new file mode 100644 index 00000000..19e5cf3b --- /dev/null +++ b/docs/notebooks/Example_CRISPR.ipynb @@ -0,0 +1,273 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Implementation of Oligonucleotide-based CRISPR-Cas9 toolbox for efficient engineering of Komagataella phaffii \n", + "\n", + "\n", + "In this example we wanted to give a real life intuition on how to use the module in practice. \n", + "\n", + "For this purpose we have chosen to use the oligonucleotide-based CRISPR-Cas9 toolbox that i described \n", + "here by Strucko et al 2024, in the industrially relevant K. phaffi production organism: \n", + "\n", + "https://academic.oup.com/femsyr/article/doi/10.1093/femsyr/foae026/7740463?login=false " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "" + ], + "text/plain": [ + "" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from IPython.display import Image\n", + "Image(url=\"https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/femsyr/24/10.1093_femsyr_foae026/1/m_foae026fig3.jpeg?Expires=1730974846&Signature=iBKvkhkUn1823IljQ~1uFEnKO0VqWrwiXADvCwQLz6Yv8yDEAFkgt~tsLrXKFTmGYIq3ZINcj5a5yNgs4cP4NeCvRcQh7Ad~1ZejIwNrjqw51CJhGcZWPzz~NDr93QVLZZd2Re41cJNFKFmEu756KxrHQxwKTQe2QPMPfiKBvhvo8J28PERj3vNjZ3LQRsFp9qUPpdsZEyWIiNY92jsuy448YyuaGCgaC2ExGDLeuArTEJmq8gtb0QnTPV0dEdtoxIfZpgavdvO~QyqikjCLj6hebUYU1lH7StuS8oqCQE82CXO0IUcjYF6m2Lb0evXhqdLDQe90M-NrKjzNRmBA0A__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Figure 1. oligo assisted repair in K. phaffi. " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + "- Basically we can make two cuts in the genome, and repair it with an oligo (Figure 1A, 1B).\n", + "\n", + "\n", + "- We can start by loading in our target. Here we have integrated LAC12 in our K. phaffi strain but want to knock it out. \n", + "\n", + "\n", + "- Let's see how this can be implemented in pydna\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Import the gene we are going to work with" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: False\n", + "size: 7127\n", + "ID: X06997.1\n", + "Name: X06997\n", + "Description: Kluyveromyces lactis LAC12 gene for lactose permease\n", + "Number of features: 8\n", + "/molecule_type=DNA\n", + "/topology=linear\n", + "/data_file_division=PLN\n", + "/date=25-JUL-2016\n", + "/accessions=['X06997']\n", + "/sequence_version=1\n", + "/keywords=['lactose permease', 'unidentified reading frame']\n", + "/source=Kluyveromyces lactis\n", + "/organism=Kluyveromyces lactis\n", + "/taxonomy=['Eukaryota', 'Fungi', 'Dikarya', 'Ascomycota', 'Saccharomycotina', 'Saccharomycetes', 'Saccharomycetales', 'Saccharomycetaceae', 'Kluyveromyces']\n", + "/references=[Reference(title='Primary structure of the lactose permease gene from the yeast Kluyveromyces lactis. Presence of an unusual transcript structure', ...), Reference(title='Direct Submission', ...)]\n", + "/comment=the sequence submitted starts from the 5'end of LAC4 gene but goes\n", + "to the opposite direction; therefore, base number 1 is -1199 of\n", + "LAC4 gene; for LAC4 gene seq. see\n", + "Mol. Cell. Biol. (1987)7,4369-4376.\n", + "Dseq(-7127)\n", + "GCGA..TTCG\n", + "CGCT..AAGC\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.crispr import cas9, protospacer\n", + "from pydna.genbank import Genbank\n", + "\n", + "# initalize your favourite gene\n", + "gb = Genbank(\"myself@email.com\") # Tell Genbank who you are!\n", + "gene = gb.nucleotide(\"X06997\") # Kluyveromyces lactis LAC12 gene for lactose permease that have been integrated into K. phaffi\n", + "target_dseq = Dseqrecord(gene)\n", + "print(target_dseq)\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Next we have chosen some guides and can add them to our cas9 enzymes and simulate the cuts." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "cutting with guide 1: (Dseqrecord(-135), Dseqrecord(-6992))\n", + "cutting with guide 2: (Dseqrecord(-6793), Dseqrecord(-334))\n" + ] + } + ], + "source": [ + "\n", + "# Choose guides\n", + "guides = [\"CCCTAAGTCCTTTGAAGATT\", \"TATTATTTTGAGGTGCTTTA\"]\n", + "\n", + "# Create an enzyme object with the protospacer\n", + "enzyme = cas9(guides[0])\n", + "\n", + "# Simulate the cut with enzyme1\n", + "print('cutting with guide 1:', target_dseq.cut(enzyme))\n", + "\n", + "# Create an enzyme from the protospacer\n", + "enzyme2 = cas9(guides[1])\n", + "\n", + "# Simulate the cut with enzyme2\n", + "print('cutting with guide 2:', target_dseq.cut(enzyme2))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "With these guides I would be able to generate a stable KO with a repair 60/90mer oligo." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "My repair oligo for this experiment : AGGTGAACACACTCTGATGTAGTGCAGTCCCTAAGTCCTTTGAAGTTACGGACTCCTCGACCGATGCCCTTGAGAGCCTTCAACCCAGTC \n", + "My repair oligo for this experiment length : 90 \n" + ] + } + ], + "source": [ + "repair_oligo = target_dseq.cut(enzyme)[0][-45:]+target_dseq.cut(enzyme2)[-1][:45]\n", + "repair_oligo.name = 'My repair oligo for this experiment'\n", + "print(f'{repair_oligo.name} : {repair_oligo.seq} ')\n", + "print(f'{repair_oligo.name} length : {len(repair_oligo.seq)} ')" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The final edit gene would look like this in a case of homologous recombination. \n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
name|45\n",
+       "     \\/\n",
+       "     /\\\n",
+       "     45|My repair oligo for this experiment|45\n",
+       "                                            \\/\n",
+       "                                            /\\\n",
+       "                                            45|name
" + ], + "text/plain": [ + "Contig(-469)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.assembly import Assembly\n", + "\n", + "my_KO = Assembly((target_dseq.cut(enzyme)[0],repair_oligo, target_dseq.cut(enzyme2)[-1]), limit = 20 )\n", + "my_assembly_KO, *rest = my_KO.assemble_linear()\n", + "my_assembly_KO" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Example_Gibson.ipynb b/docs/notebooks/Example_Gibson.ipynb new file mode 100755 index 00000000..edd7f48c --- /dev/null +++ b/docs/notebooks/Example_Gibson.ipynb @@ -0,0 +1,270 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Example of a Gibson Assembly in pydna\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "This example showcases a workflow of modelling Gibson assembly to clone gene fragments into plasmids for synthetic biology. The biological example is sourced [here](https://www.nature.com/articles/nmeth.1318#MOESM319), from the original Gibson assembly paper. This example constructs a synthetic pCC1BAC plasmid by joining sequence fragments from Ruminiclostridium (Clostridium) cellulolyticum. The R. cellulolyticum fragments joined are termed F1, F2, and F3, as in the paper.\n", + "\n", + "Source files can be found alongside this notebook, if you would like to follow along. Annotations are made alongside the code to describe key steps.\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Importing all necessary classes and methods\n", + "\n", + "from pydna.parsers import parse\n", + "from pydna.tm import tm_default\n", + "from pydna.amplify import pcr\n", + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.assembly import Assembly\n", + "from pydna.genbank import Genbank\n", + "from pydna.gel import gel\n", + "from pydna.ladders import GeneRuler_1kb_plus\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'molecule_type': 'DNA',\n", + " 'topology': 'circular',\n", + " 'data_file_division': 'BCT',\n", + " 'date': '25-AUG-2017',\n", + " 'accessions': ['CP001348', 'AAVC01000000', 'AAVC01000001-AAVC01000121'],\n", + " 'sequence_version': 1,\n", + " 'keywords': [''],\n", + " 'source': 'Ruminiclostridium cellulolyticum H10',\n", + " 'organism': 'Ruminiclostridium cellulolyticum H10',\n", + " 'taxonomy': ['Bacteria',\n", + " 'Bacillota',\n", + " 'Clostridia',\n", + " 'Eubacteriales',\n", + " 'Oscillospiraceae',\n", + " 'Ruminiclostridium'],\n", + " 'references': [Reference(title='Complete sequence of Clostridium cellulolyticum H10', ...),\n", + " Reference(title='Direct Submission', ...)],\n", + " 'comment': 'URL -- http://www.jgi.doe.gov\\nJGI Project ID: 4002584\\nSource DNA and bacteria available from Jizhong Zhou\\n(jzhou@rccc.ou.edu)\\nContacts: Jizhong Zhou (jzhou@rccc.ou.edu)\\n David Bruce (microbe@cuba.jgi-psf.org)\\nAnnotation done by JGI-ORNL and JGI-PGF\\nFinishing done by JGI-LANL\\nFinished microbial genomes have been curated to close all gaps with\\ngreater than 98% coverage of at least two independent clones. Each\\nbase pair has a minimum q (quality) value of 30 and the total error\\nrate is less than one per 50000.\\nThe JGI and collaborators endorse the principles for the\\ndistribution and use of large scale sequencing data adopted by the\\nlarger genome sequencing community and urge users of this data to\\nfollow them. it is our intention to publish the work of this\\nproject in a timely fashion and we welcome collaborative\\ninteraction on the project and analysis.\\n(http://www.genome.gov/page.cfm?pageID=10506376).'}" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Reading the R. cellulolyticum genome from GenBank\n", + "gb = Genbank(\"example@example.com\")\n", + "genome = gb.nucleotide(\"CP001348.1\")\n", + "# Print the info of the genome\n", + "genome.annotations" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'molecule_type': 'DNA',\n", + " 'topology': 'circular',\n", + " 'data_file_division': 'SYN',\n", + " 'date': '29-AUG-2024',\n", + " 'accessions': ['.'],\n", + " 'keywords': [''],\n", + " 'source': 'synthetic DNA construct',\n", + " 'organism': 'synthetic DNA construct',\n", + " 'taxonomy': [],\n", + " 'references': [Reference(title='Direct Submission', ...),\n", + " Reference(title='Direct Submission', ...),\n", + " Reference(title='Direct Submission', ...),\n", + " Reference(title='Direct Submission', ...)],\n", + " 'comment': 'SGRef: number: 1; type: \"Journal Article\"; journalName: \"Submitted\\n(23-AUG-2007) 726 Post Road, Madison, WI 53713, USA\"\\nSGRef: number: 2; type: \"Journal Article\"\\nSGRef: number: 3; type: \"Journal Article\"'}" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Reading the plasmid\n", + "vector = parse(\"./pCC1BAC.gb\")[0]\n", + "vector.annotations" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Importing pre-designed primers for the PylRS insert fragment. \n", + "\n", + "F1_For = \"GCAGCTTCAAGTCCTGCAAACAAGGTGTACCAGGATCGTT\"\n", + "F1_Rev = \"GATTTCAGTGTAGTTAGGGCCAGTTGAATTCAAACCTGCC\"\n", + "F2_For = \"GGCAGGTTTGAATTCAACTGGCCCTAACTACACTGAAATC\"\n", + "F2_Rev = \"CTTGGTGCCATCAGCATTGTTCTCTGTACCGCCCACTGTC\"\n", + "F3_For = \"GACAGTGGGCGGTACAGAGAACAATGCTGATGGCACCAAG\"\n", + "F3_Rev = \"CAGTTGAATAATCATGTGTTCCTGCGGCAAATGCAGTACC\"\n", + "BACF1_For = \"AACGATCCTGGTACACCTTGTTTGCAGGACTTGAAGCTGCgcggccgcgatcctctagagtcgacctg\"\n", + "BACF3_Rev = \"GGTACTGCATTTGCCGCAGGAACACATGATTATTCAACTGgcggccgccgggtaccgagctcgaattc\"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "5210\n", + "5384\n", + "5172\n", + "8221\n" + ] + } + ], + "source": [ + "# Getting the PCR products from the genome (might take a while since the genome is large)\n", + "\n", + "pcr_product_F1 = pcr(F1_For, F1_Rev, genome, limit=20)\n", + "pcr_product_F2 = pcr(F2_For, F2_Rev, genome, limit=20)\n", + "pcr_product_F3 = pcr(F3_For, F3_Rev, genome, limit=20)\n", + "pcr_product_BAC = pcr(BACF1_For, BACF3_Rev, vector, limit=20)\n", + "\n", + "# Printing out the PCR fragment sizes\n", + "print(len(pcr_product_F1))\n", + "print(len(pcr_product_F2))\n", + "print(len(pcr_product_F3))\n", + "print(len(pcr_product_BAC))\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "image/jpeg": 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", 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", + "text/plain": [ + "" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Making a gel to show the PCR products\n", + "im = gel(\n", + " [\n", + " GeneRuler_1kb_plus,\n", + " [pcr_product_F1],\n", + " [pcr_product_F2],\n", + " [pcr_product_F3],\n", + " [pcr_product_BAC],\n", + " ]\n", + ")\n", + "im.rotate(90, expand=1)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: True\n", + "size: 23827\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 28\n", + "/molecule_type=DNA\n", + "Dseq(o23827)\n", + "GCAG..ccgc\n", + "CGTC..ggcg\n" + ] + } + ], + "source": [ + "# Performing the Gibson Assembly. Note that the assembly class parameters should be given as a list.\n", + "\n", + "assembled = Assembly([Dseqrecord(pcr_product_F1), Dseqrecord(pcr_product_F2), Dseqrecord(pcr_product_F3), Dseqrecord(pcr_product_BAC)])\n", + "assembled_circ = assembled.assemble_circular()\n", + "\n", + "# Printing out the Gibson Assembly product\n", + "print(assembled_circ[0])" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Example_Restriction.ipynb b/docs/notebooks/Example_Restriction.ipynb new file mode 100755 index 00000000..29e0ca56 --- /dev/null +++ b/docs/notebooks/Example_Restriction.ipynb @@ -0,0 +1,1017 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Example of a Plasmid Restriction/Ligation Cloning\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "This example showcases a workflow of modelling molecular cloning with restriction enzymes, PCR, and ligases, to clone gene fragments into plasmids. This example constructs a synthetic plasmid by cloning the ase1 gene, which encodes a microtubule associated protein responsible for mitotic spindle assembly, into the pFA6a-kanMX6 cloning vector:\n", + "\n", + "1. The ase1 gene fragment is first cloned from a portion of the _S. pombe_ genome through PCR:\n", + "2. The pFA6a-kanMX6 cloning vector is then cleaved with AscI and SalI. The ase1 gene fragment is also cleaved with SalI and AscI\n", + "3. The fragment is ligated with the linearized pFA6a-kanMX6 vector.\n", + "\n", + "Source files can be found alongside this notebook, if you would like to follow along. Annotations are made alongside the code to describe key steps." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Importing all necessary classes and methods\n", + "\n", + "from pydna.parsers import parse\n", + "from pydna.tm import tm_default\n", + "from pydna.amplify import pcr\n", + "from pydna.dseqrecord import Dseqrecord\n", + "from Bio.Restriction import SalI, AscI" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS pFA6a-kanMX6 3938 bp ds-DNA circular SYN 16-JUN-2022\n", + "DEFINITION synthetic circular DNA.\n", + "ACCESSION .\n", + "VERSION .\n", + "KEYWORDS pFA6a-kanMX6.\n", + "SOURCE synthetic DNA construct\n", + " ORGANISM synthetic DNA construct\n", + " .\n", + "REFERENCE 1 (bases 1 to 3938)\n", + " AUTHORS Bahler J, Wu JQ, Longtine MS, Shah NG, McKenzie A 3rd, Steever AB,\n", + " Wach A, Philippsen P, Pringle JR\n", + " TITLE Heterologous modules for efficient and versatile PCR-based gene\n", + " targeting in Schizosaccharomyces pombe.\n", + " JOURNAL Yeast. 1998 Jul;14(10):943-51.\n", + " PUBMED 9717240\n", + "REFERENCE 2 (bases 1 to 3938)\n", + " AUTHORS .\n", + " TITLE Direct Submission\n", + " JOURNAL Exported Jun 16, 2022 from SnapGene Server 1.1.58\n", + " http://www.snapgene.com\n", + "FEATURES Location/Qualifiers\n", + " source 1..3938\n", + " /organism=\"synthetic DNA construct\"\n", + " /mol_type=\"other DNA\"\n", + " primer_bind complement(35..52)\n", + " /label=\"L4440\"\n", + " /note=\"L4440 vector, forward primer\"\n", + " rep_origin complement(206..794)\n", + " /direction=LEFT\n", + " /label=\"ori\"\n", + " /note=\"high-copy-number ColE1/pMB1/pBR322/pUC origin of\n", + " replication\"\n", + " primer_bind complement(286..305)\n", + " /label=\"pBR322ori-F\"\n", + " /note=\"pBR322 origin, forward primer\"\n", + " CDS complement(965..1825)\n", + " /codon_start=1\n", + " /gene=\"bla\"\n", + " /product=\"beta-lactamase\"\n", + " /label=\"AmpR\"\n", + " /note=\"confers resistance to ampicillin, carbenicillin, and\n", + " related antibiotics\"\n", + " /translation=\"MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI\n", + " ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS\n", + " PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW\n", + " EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA\n", + " LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS\n", + " LIKHW\"\n", + " primer_bind 1588..1607\n", + " /label=\"Amp-R\"\n", + " /note=\"Ampicillin resistance gene, reverse primer\"\n", + " promoter complement(1826..1930)\n", + " /gene=\"bla\"\n", + " /label=\"AmpR promoter\"\n", + " primer_bind 1998..2016\n", + " /label=\"pBRforEco\"\n", + " /note=\"pBR322 vectors, upsteam of EcoRI site, forward\n", + " primer\"\n", + " primer_bind complement(2054..2076)\n", + " /label=\"pGEX 3'\"\n", + " /note=\"pGEX vectors, reverse primer\"\n", + " primer_bind 2176..2195\n", + " /label=\"pRS-marker\"\n", + " /note=\"pRS vectors, use to sequence yeast selectable\n", + " marker\"\n", + " promoter 2276..2294\n", + " /label=\"SP6 promoter\"\n", + " /note=\"promoter for bacteriophage SP6 RNA polymerase\"\n", + " primer_bind 2276..2293\n", + " /label=\"SP6\"\n", + " /note=\"SP6 promoter, forward primer\"\n", + " gene 2407..3763\n", + " /label=\"kanMX\"\n", + " /note=\"yeast selectable marker conferring kanamycin\n", + " resistance (Wach et al., 1994)\"\n", + " promoter 2407..2750\n", + " /label=\"TEF promoter\"\n", + " /note=\"Ashbya gossypii TEF promoter\"\n", + " CDS 2751..3560\n", + " /codon_start=1\n", + " /gene=\"aph(3')-Ia\"\n", + " /product=\"aminoglycoside phosphotransferase\"\n", + " /label=\"KanR\"\n", + " /note=\"confers resistance to kanamycin\"\n", + " /translation=\"MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP\n", + " DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA\n", + " FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD\n", + " FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD\n", + " RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF\"\n", + " primer_bind complement(2818..2837)\n", + " /label=\"Kan-R\"\n", + " /note=\"Kanamycin resistance gene, reverse primer\"\n", + " terminator 3566..3763\n", + " /label=\"TEF terminator\"\n", + " /note=\"Ashbya gossypii TEF terminator\"\n", + " primer_bind complement(3867..3886)\n", + " /label=\"T7\"\n", + " /note=\"T7 promoter, forward primer\"\n", + " promoter complement(3868..3886)\n", + " /label=\"T7 promoter\"\n", + " /note=\"promoter for bacteriophage T7 RNA polymerase\"\n", + "ORIGIN\n", + " 1 gaggcggttt gcgtattggg cgctcttccg cttcctcgct cactgactcg ctgcgctcgg\n", + " 61 tcgttcggct gcggcgagcg gtatcagctc actcaaaggc ggtaatacgg ttatccacag\n", + " 121 aatcagggga taacgcagga aagaacatgt gagcaaaagg ccagcaaaag gccaggaacc\n", + " 181 gtaaaaaggc cgcgttgctg gcgtttttcc ataggctccg cccccctgac gagcatcaca\n", + " 241 aaaatcgacg ctcaagtcag aggtggcgaa acccgacagg actataaaga taccaggcgt\n", + " 301 ttccccctgg aagctccctc gtgcgctctc ctgttccgac cctgccgctt accggatacc\n", + " 361 tgtccgcctt tctcccttcg ggaagcgtgg cgctttctca tagctcacgc tgtaggtatc\n", + " 421 tcagttcggt gtaggtcgtt cgctccaagc tgggctgtgt gcacgaaccc cccgttcagc\n", + " 481 ccgaccgctg cgccttatcc ggtaactatc gtcttgagtc caacccggta agacacgact\n", + " 541 tatcgccact ggcagcagcc actggtaaca ggattagcag agcgaggtat gtaggcggtg\n", + " 601 ctacagagtt cttgaagtgg tggcctaact acggctacac tagaagaaca gtatttggta\n", + " 661 tctgcgctct gctgaagcca gttaccttcg gaaaaagagt tggtagctct tgatccggca\n", + " 721 aacaaaccac cgctggtagc ggtggttttt ttgtttgcaa gcagcagatt acgcgcagaa\n", + " 781 aaaaaggatc tcaagaagat cctttgatct tttctacggg gtctgacgct cagtggaacg\n", + " 841 aaaactcacg ttaagggatt ttggtcatga gattatcaaa aaggatcttc acctagatcc\n", + " 901 ttttaaatta aaaatgaagt tttaaatcaa tctaaagtat atatgagtaa acttggtctg\n", + " 961 acagttacca atgcttaatc agtgaggcac ctatctcagc gatctgtcta tttcgttcat\n", + " 1021 ccatagttgc ctgactcccc gtcgtgtaga taactacgat acgggagggc ttaccatctg\n", + " 1081 gccccagtgc tgcaatgata ccgcgagacc cacgctcacc ggctccagat ttatcagcaa\n", + " 1141 taaaccagcc agccggaagg gccgagcgca gaagtggtcc tgcaacttta tccgcctcca\n", + " 1201 tccagtctat taattgttgc cgggaagcta gagtaagtag ttcgccagtt aatagtttgc\n", + " 1261 gcaacgttgt tgccattgct acaggcatcg tggtgtcacg ctcgtcgttt ggtatggctt\n", + " 1321 cattcagctc cggttcccaa cgatcaaggc gagttacatg atcccccatg ttgtgcaaaa\n", + " 1381 aagcggttag ctccttcggt cctccgatcg ttgtcagaag taagttggcc gcagtgttat\n", + " 1441 cactcatggt tatggcagca ctgcataatt ctcttactgt catgccatcc gtaagatgct\n", + " 1501 tttctgtgac tggtgagtac tcaaccaagt cattctgaga atagtgtatg cggcgaccga\n", + " 1561 gttgctcttg cccggcgtca atacgggata ataccgcgcc acatagcaga actttaaaag\n", + " 1621 tgctcatcat tggaaaacgt tcttcggggc gaaaactctc aaggatctta ccgctgttga\n", + " 1681 gatccagttc gatgtaaccc actcgtgcac ccaactgatc ttcagcatct tttactttca\n", + " 1741 ccagcgtttc tgggtgagca aaaacaggaa ggcaaaatgc cgcaaaaaag ggaataaggg\n", + " 1801 cgacacggaa atgttgaata ctcatactct tcctttttca atattattga agcatttatc\n", + " 1861 agggttattg tctcatgagc ggatacatat ttgaatgtat ttagaaaaat aaacaaatag\n", + " 1921 gggttccgcg cacatttccc cgaaaagtgc cacctgacgt ctaagaaacc attattatca\n", + " 1981 tgacattaac ctataaaaat aggcgtatca cgaggccctt tcgtctcgcg cgtttcggtg\n", + " 2041 atgacggtga aaacctctga cacatgcagc tcccggagac ggtcacagct tgtctgtaag\n", + " 2101 cggatgccgg gagcagacaa gcccgtcagg gcgcgtcagc gggtgttggc gggtgtcggg\n", + " 2161 gctggcttaa ctatgcggca tcagagcaga ttgtactgag agtgcaccat atggacatat\n", + " 2221 tgtcgttaga acgcggctac aattaataca taaccttatg tatcatacac atacgattta\n", + " 2281 ggtgacacta tagaacgcgg ccgccagctg aagcttcgta cgctgcaggt cgacggatcc\n", + " 2341 ccgggttaat taaggcgcgc cagatctgtt tagcttgcct cgtccccgcc gggtcacccg\n", + " 2401 gccagcgaca tggaggccca gaataccctc cttgacagtc ttgacgtgcg cagctcaggg\n", + " 2461 gcatgatgtg actgtcgccc gtacatttag cccatacatc cccatgtata atcatttgca\n", + " 2521 tccatacatt ttgatggccg cacggcgcga agcaaaaatt acggctcctc gctgcagacc\n", + " 2581 tgcgagcagg gaaacgctcc cctcacagac gcgttgaatt gtccccacgc cgcgcccctg\n", + " 2641 tagagaaata taaaaggtta ggatttgcca ctgaggttct tctttcatat acttcctttt\n", + " 2701 aaaatcttgc taggatacag ttctcacatc acatccgaac ataaacaacc atgggtaagg\n", + " 2761 aaaagactca cgtttcgagg ccgcgattaa attccaacat ggatgctgat ttatatgggt\n", + " 2821 ataaatgggc tcgcgataat gtcgggcaat caggtgcgac aatctatcga ttgtatggga\n", + " 2881 agcccgatgc gccagagttg tttctgaaac atggcaaagg tagcgttgcc aatgatgtta\n", + " 2941 cagatgagat ggtcagacta aactggctga cggaatttat gcctcttccg accatcaagc\n", + " 3001 attttatccg tactcctgat gatgcatggt tactcaccac tgcgatcccc ggcaaaacag\n", + " 3061 cattccaggt attagaagaa tatcctgatt caggtgaaaa tattgttgat gcgctggcag\n", + " 3121 tgttcctgcg ccggttgcat tcgattcctg tttgtaattg tccttttaac agcgatcgcg\n", + " 3181 tatttcgtct cgctcaggcg caatcacgaa tgaataacgg tttggttgat gcgagtgatt\n", + " 3241 ttgatgacga gcgtaatggc tggcctgttg aacaagtctg gaaagaaatg cataagcttt\n", + " 3301 tgccattctc accggattca gtcgtcactc atggtgattt ctcacttgat aaccttattt\n", + " 3361 ttgacgaggg gaaattaata ggttgtattg atgttggacg agtcggaatc gcagaccgat\n", + " 3421 accaggatct tgccatccta tggaactgcc tcggtgagtt ttctccttca ttacagaaac\n", + " 3481 ggctttttca aaaatatggt attgataatc ctgatatgaa taaattgcag tttcatttga\n", + " 3541 tgctcgatga gtttttctaa tcagtactga caataaaaag attcttgttt tcaagaactt\n", + " 3601 gtcatttgta tagttttttt atattgtagt tgttctattt taatcaaatg ttagcgtgat\n", + " 3661 ttatattttt tttcgcctcg acatcatctg cccagatgcg aagttaagtg cgcagaaagt\n", + " 3721 aatatcatgc gtcaatcgta tgtgaatgct ggtcgctata ctgctgtcga ttcgatacta\n", + " 3781 acgccgccat ccagtttaaa cgagctcgaa ttcatcgatg atatcagatc cactagtggc\n", + " 3841 ctatgcggcc gcggatctgc cggtctccct atagtgagtc gtattaattt cgataagcca\n", + " 3901 ggttaacctg cattaatgaa tcggccaacg cgcgggga\n", + "//\n", + "LOCUS CU329670 4538 bp DNA linear PLN 26-APR-2024\n", + "DEFINITION Schizosaccharomyces pombe strain 972h- genome assembly, chromosome:\n", + " I.\n", + "ACCESSION CU329670\n", + "VERSION CU329670.1\n", + "DBLINK BioProject: PRJNA13836\n", + " BioSample: SAMEA3138176\n", + "KEYWORDS .\n", + "SOURCE Schizosaccharomyces pombe (fission yeast)\n", + " ORGANISM Schizosaccharomyces pombe\n", + " Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;\n", + " Schizosaccharomycetes; Schizosaccharomycetales;\n", + " Schizosaccharomycetaceae; Schizosaccharomyces.\n", + "REFERENCE 1 (bases 1 to 4538)\n", + " AUTHORS Lang,B.F.\n", + " TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces\n", + " pombe: highly homologous introns are inserted at the same position\n", + " of the otherwise less conserved cox1 genes in Schizosaccharomyces\n", + " pombe and Aspergillus nidulans\n", + " JOURNAL EMBO J 3 (9), 2129-2136 (1984)\n", + " PUBMED 6092057\n", + "REFERENCE 2 (bases 1 to 4538)\n", + " AUTHORS Lang,B.F., Ahne,F. and Bonen,L.\n", + " TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces\n", + " pombe. The cytochrome b gene has an intron closely related to the\n", + " first two introns in the Saccharomyces cerevisiae cox1 gene\n", + " JOURNAL J Mol Biol 184 (3), 353-366 (1985)\n", + " PUBMED 4046021\n", + "REFERENCE 3 (bases 1 to 4538)\n", + " AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W.\n", + " TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces\n", + " pombe. Sequence of the large-subunit ribosomal RNA gene, comparison\n", + " of potential secondary structure in fungal mitochondrial\n", + " large-subunit rRNAs and evolutionary considerations\n", + " JOURNAL Eur J Biochem 169 (3), 527-537 (1987)\n", + " PUBMED 2446871\n", + "REFERENCE 4 (bases 1 to 4538)\n", + " AUTHORS Trinkl,H., Lang,B.F. and Wolf,K.\n", + " TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in\n", + " the mitochondrial genome of the fission yeast Schizosaccharomyces\n", + " pombe\n", + " JOURNAL Nucleic Acids Res 17 (16), 6730 (1989)\n", + " PUBMED 2780299\n", + "REFERENCE 5 (bases 1 to 4538)\n", + " AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A.,\n", + " Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S.,\n", + " Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C.,\n", + " Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A.,\n", + " Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G.,\n", + " Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K.,\n", + " James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J.,\n", + " Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C.,\n", + " Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E.,\n", + " Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S.,\n", + " Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K.,\n", + " Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S.,\n", + " Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B.,\n", + " Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S.,\n", + " Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,\n", + " Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R.,\n", + " Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R.,\n", + " Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V.,\n", + " Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K.,\n", + " Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A.,\n", + " Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M.,\n", + " del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S.,\n", + " Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R.,\n", + " Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G.\n", + " and Nurse,P.\n", + " TITLE The genome sequence of Schizosaccharomyces pombe\n", + " JOURNAL Nature 415 (6874), 871-880 (2002)\n", + " PUBMED 11859360\n", + " REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to\n", + " Cerutti L]]\n", + "REFERENCE 6\n", + " AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A.,\n", + " Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S.,\n", + " Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C.,\n", + " Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A.,\n", + " Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G.,\n", + " Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K.,\n", + " James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J.,\n", + " Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C.,\n", + " Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E.,\n", + " Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S.,\n", + " Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K.,\n", + " Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S.,\n", + " Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B.,\n", + " Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S.,\n", + " Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,\n", + " Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R.,\n", + " Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R.,\n", + " Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V.,\n", + " Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K.,\n", + " Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A.,\n", + " Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M.,\n", + " del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S.,\n", + " Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R.,\n", + " Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G.\n", + " and Nurse,P.\n", + " TITLE The genome sequence of Schizosaccharomyces pombe\n", + " JOURNAL Nature 415 (6874), 871-880 (2002)\n", + " PUBMED 11859360\n", + " REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to\n", + " Cerutti L]]\n", + "REFERENCE 7 (bases 1 to 4538)\n", + " AUTHORS Schafer,B., Hansen,M. and Lang,B.F.\n", + " TITLE Transcription and RNA-processing in fission yeast mitochondria\n", + " JOURNAL RNA 11 (5), 785-795 (2005)\n", + " PUBMED 15811919\n", + "REFERENCE 8\n", + " AUTHORS Wood,V.\n", + " CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium\n", + " TITLE Direct Submission\n", + " JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome\n", + " sequencing project, Sanger Institute, The Wellcome Trust Genome\n", + " Campus, Hinxton, Cambridge CB10 1SA\n", + "REFERENCE 9\n", + " AUTHORS Wood,V. and Rutherford,K.\n", + " CONSRTM PomBase\n", + " TITLE Direct Submission\n", + " JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins\n", + " building, Tennis Court Rd, Cambridge, United Kingdom\n", + "COMMENT On or before Jan 26, 2012 this sequence version replaced\n", + " AL672256.4, AL009197.1, AL009227.1, AL021046.4, AL021809.4,\n", + " AL021813.1, AL021817.2, AL031180.3, AL034486.1, AL034565.1,\n", + " AL034583.1, AL035064.1, AL035248.2, AL035254.1, AL035439.1,\n", + " AL096845.1, AL109734.1, AL109738.1, AL109739.1, AL109770.1,\n", + " AL109820.1, AL109831.1, AL109832.1, AL109951.1, AL109988.1,\n", + " AL110469.1, AL110509.2, AL117210.1, AL117212.1, AL117213.1,\n", + " AL117390.1, AL121732.1, AL121741.1, AL121745.2, AL121764.1,\n", + " AL121765.1, AL121770.1, AL122032.1, AL132667.1, AL132675.1,\n", + " AL132714.1, AL132769.1, AL132779.2, AL132798.2, AL132828.1,\n", + " AL132839.1, AL132983.1, AL132984.1, AL133154.2, AL133156.1,\n", + " AL133157.1, AL133225.2, AL133302.1, AL133357.1, AL133359.1,\n", + " AL133360.1, AL133361.1, AL133442.1, AL133498.1, AL133521.1,\n", + " AL133522.1, AL135751.1, AL136078.1, AL136235.1, AL136499.1,\n", + " AL136521.2, AL136538.1, AL137130.1, AL138666.2, AL138854.1,\n", + " AL139315.1, AL157734.1, AL157811.1, AL157872.1, AL157917.1,\n", + " AL157993.1, AL157994.1, AL158056.1, AL159180.1, AL159951.1,\n", + " AL162531.1, AL162631.1, AL163031.1, AL163071.1, AL163191.2,\n", + " AL163481.1, AL163529.1, AL353014.1, AL353860.2, AL355012.1,\n", + " AL355013.1, AL355252.1, AL355452.1, AL355632.1, AL355652.1,\n", + " AL355653.1, AL356333.1, AL356335.1, AL357232.1, AL358272.1,\n", + " AL360054.1, AL360094.1, AL390095.1, AL390274.1, AL390814.1,\n", + " AL391713.1, AL391744.1, AL391746.2, AL391783.1, AL441621.1,\n", + " AL441624.1, AL512486.1, AL512487.1, AL512491.1, AL512493.1,\n", + " AL512496.1, AL512549.1, AL512562.1, AL583902.1, AL590562.1,\n", + " AL590582.1, AL590602.1, AL590605.1, AL590902.2, AL590903.1,\n", + " AL691401.1, AL691402.1, AL691405.1, Z49811.1, Z50112.1, Z50113.1,\n", + " Z50142.1, Z50728.2, Z54096.1, Z54142.2, Z54285.2, Z54308.1,\n", + " Z54328.1, Z54354.1, Z54366.1, Z56276.2, Z64354.1, Z66568.2,\n", + " Z67757.1, Z67961.2, Z67998.1, Z67999.1, Z68136.2, Z68144.1,\n", + " Z68166.1, Z68197.2, Z68198.1, Z68887.1, Z69086.1, Z69239.1,\n", + " Z69240.1, Z69368.1, Z69369.1, Z69380.1, Z69725.1, Z69726.1,\n", + " Z69727.1, Z69728.1, Z69729.1, Z69730.1, Z69731.1, Z69795.1,\n", + " Z69796.1, Z69944.1, Z70043.1, Z70690.1, Z70691.1, Z70721.1,\n", + " Z73099.2, Z73100.2, Z81312.1, Z81317.1, Z94864.1, Z95334.1,\n", + " Z95395.1, Z95396.2, Z97185.1, Z97208.1, Z97209.1, Z97210.2,\n", + " Z98056.2, Z98529.1, Z98530.2, Z98531.2, Z98532.1, Z98533.1,\n", + " Z98559.1, Z98560.1, Z98595.1, Z98596.1, Z98597.1, Z98598.1,\n", + " Z98600.1, Z98601.1, Z98602.1, Z98603.1, Z98762.1, Z98763.1,\n", + " Z98849.1, Z98944.1, Z98974.2, Z98975.1, Z98977.4, Z98978.1,\n", + " Z98979.1, Z98980.1, Z98981.3, Z99091.2, Z99126.1, Z99161.1,\n", + " Z99162.1, Z99163.2, Z99164.2, Z99165.1, Z99166.1, Z99167.1,\n", + " Z99168.1, Z99258.1, Z99259.1, Z99260.2, Z99261.1, Z99262.1,\n", + " Z99292.1, Z99295.1, Z99296.2, Z99531.1, Z99532.2, Z99568.2,\n", + " Z99753.1.\n", + "FEATURES Location/Qualifiers\n", + " source 1..4538\n", + " /organism=\"Schizosaccharomyces pombe\"\n", + " /mol_type=\"genomic DNA\"\n", + " /strain=\"972h-\"\n", + " /db_xref=\"taxon:4896\"\n", + " /chromosome=\"I\"\n", + " gene <1..676\n", + " /locus_tag=\"SPOM_SPAPB1A10.08\"\n", + " CDS <1..393\n", + " /locus_tag=\"SPOM_SPAPB1A10.08\"\n", + " /codon_start=1\n", + " /product=\"conserved fungal protein\"\n", + " /protein_id=\"CAC21481.2\"\n", + " /translation=\"MMTRMELRPLEIGFSKALTEVAPVTCQCECWDHNLCSSQASEMDL\n", + " IYQSQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKSQLDRFLSSS\n", + " KKLHNDDVNRGDYCFLLSTPVECSASTNSHSYDCLWNFSCNSFPEYSSYSASETSSVAS\n", + " YSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHNHPLSK\n", + " SLEEQSSFLEQSKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIM\n", + " SLSRNIIRRVFHKPEVHLDPSASILNLSSSHGESNLTNGLLCQNFKLFQDDWLMEDCAP\n", + " DANFTLYTPLQPWEKRSVKPEIRRPRLNPNFFRVFVLEAQMRRAGKLSANTAGRAQLIY\n", + " LPKPAVTFSTSPLHVEL\"\n", + " gene complement(<1..1972)\n", + " /locus_tag=\"SPOM_SPNCRNA.2846\"\n", + " ncRNA complement(<1..1972)\n", + " /ncRNA_class=\"lncRNA\"\n", + " /locus_tag=\"SPOM_SPNCRNA.2846\"\n", + " /product=\"non-coding RNA\"\n", + " 3'UTR 394..676\n", + " /locus_tag=\"SPOM_SPAPB1A10.08\"\n", + " gene 1001..3538\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " 5'UTR 1001..1173\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " CDS join(1174..1597,1645..3416)\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " /codon_start=1\n", + " /product=\"antiparallel microtubule cross-linking factor\n", + " Ase1\"\n", + " /protein_id=\"CAC21482.1\"\n", + " /translation=\"MQTVMMDDIQSTDSIAEKDNHSNNESNFTWKAFREQVEKHFSKIE\n", + " RLHQVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIRFLVSSLKLTD\n", + " DTSSLKIESPLIQCLNRLSMVEGQYMAQYDQKLSTIKEMYHKLESYCNRLGSPFVLPDF\n", + " ENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYE\n", + " QLLESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP\n", + " NEQSQFGDSSNINQENISLWETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQ\n", + " RKSFTPMYEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLIEGKKELEASSN\n", + " DASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQSLLIPEITAWEERNGRTFLFYDEPL\n", + " LKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMT\n", + " SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIR\n", + " QGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSK\n", + " NVPLSPPKQRVVNEHALNIMSEKLQRTNLKEQTPEMDIENSSQNLPFSPMKISPIRASP\n", + " VKTIPSSPSPTTNIFSAPLNNITNCTPMEDEWGEEGF\"\n", + " 3'UTR 3417..3538\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " gene complement(3510..>4538)\n", + " /gene=\"ypt71\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.10C\"\n", + " 3'UTR complement(3510..3690)\n", + " /gene=\"ypt71\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.10C\"\n", + " CDS complement(join(3691..4137,4192..>4290))\n", + " /gene=\"ypt71\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.10C\"\n", + " /codon_start=1\n", + " /product=\"GTPase Ypt71\"\n", + " /protein_id=\"CAC21483.1\"\n", + " /translation=\"MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADF\n", + " LTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQ\n", + " EFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENT\n", + " NVTDLFETVSRLALENESSRDDFVNDFSEPLLLSKPLNNTSSCNC\"\n", + " gene 4049..>4538\n", + " /locus_tag=\"SPOM_SPNCRNA.2847\"\n", + " ncRNA 4049..>4538\n", + " /ncRNA_class=\"lncRNA\"\n", + " /locus_tag=\"SPOM_SPNCRNA.2847\"\n", + " /product=\"non-coding RNA\"\n", + "ORIGIN\n", + " 1 atcatcagac gtgtatttca caagccagaa gtgcatttgg atccaagtgc ctccatttta\n", + " 61 aatctctcat cttcgcatgg cgaaagcaac ctgacaaatg gtttgctttg tcaaaatttc\n", + " 121 aagctttttc aggatgattg gttgatggag gattgtgcgc cagatgccaa tttcactttg\n", + " 181 tacaccccgc ttcaaccctg ggaaaagcga agtgtgaaac ctgaaatcag acgtcctcga\n", + " 241 ttaaatccta attttttccg agtatttgtt ttagaagctc aaatgcgacg agctggaaag\n", + " 301 ctatcagcaa acactgctgg ccgagcccag ttaatttacc tcccaaagcc tgccgttacc\n", + " 361 ttctccacta gccctttgca tgttgaattg taaaaattta acgcatgact tatatacatt\n", + " 421 tgcattcttc caagctggtt atatttattt tcattttttt ctcacccaat acttttttat\n", + " 481 ccctactgtc tttatggaca atcgactcac aattgtttct ttttgttgta tatgattttt\n", + " 541 tttttaaagg aaatgggttt cgcgatactg ggttgaatcc caattgcggt taatattaca\n", + " 601 taaaataatt ctcccatagt cctagatcct gtctttgaat atgagcaaat aaaagaattg\n", + " 661 aacaaatcat gaatgctttt ctctcttaga tgatattttg tatgcataag tctaattata\n", + " 721 ttgattacga taagacttaa aaagtaagcc tttgtatcct tttaagcagt atttgaattt\n", + " 781 tcttgtatca tattttaggt agagcaaaag ataccagttt gtagaacttt atgtgcttcc\n", + " 841 ttacattggt atatttcagg cacataaata ttcttcaact tacaattcta agtattttgt\n", + " 901 ttatactaaa aggagctgaa taacgtttat acagtgctga cattgaaatc tatttgcttt\n", + " 961 ctttggaata taagcgcatg ctgagttact ttcgcaggcc aagccatatc caaccaccat\n", + " 1021 ttttgtgcca agcttttatg caaggttaat tccttgtact gcttgttatg ttataatata\n", + " 1081 tcaacatctt aacagttttc atatcttcct ttatattcta ttaattgaat ttcaaacatc\n", + " 1141 gttttattga gctcatttac atcaaccggt tcaatgcaaa cagtaatgat ggatgacatt\n", + " 1201 caaagcactg attctattgc tgaaaaagat aatcactcta ataatgaatc taactttact\n", + " 1261 tggaaagcgt ttcgtgaaca agtggaaaag catttttcta aaattgaaag gcttcaccaa\n", + " 1321 gtccttggaa cagatggaga caattcatca ttatttgagt tgtttacaac ggcaatgaat\n", + " 1381 gcccagcttc atgaaatgga acagtgccag aaaaaacttg aagatgactg tcagcaaaga\n", + " 1441 attgattcaa tcagattttt ggtttcctca ttaaagttaa cggatgatac ttctagtctc\n", + " 1501 aaaattgagt ctcctttaat tcagtgtttg aatcgtttgt caatggtaga aggacaatat\n", + " 1561 atggcacagt atgatcaaaa gttaagtacg attaaaggta tgtaatcgtc tttaatttag\n", + " 1621 acttgtgttt taactgatgt atagaaatgt atcacaaatt ggagtcatat tgtaaccgct\n", + " 1681 taggaagtcc gttcgtttta cctgattttg agaattcatt tttatctgat gtatccgatg\n", + " 1741 cttttactga atctttgaga ggacgcatca acgaagccga aaaggagatt gatgcgagat\n", + " 1801 tagaggttat taattccttt gaagaagaaa ttttgggttt gtggtctgaa ctcggtgttg\n", + " 1861 agcccgctga tgttccacaa tacgaacaat tgcttgaatc ccatactaat cgaccaaatg\n", + " 1921 atgtttatgt tactcaagaa cttatcgacc aactttgcaa gcaaaaagaa gttttttccg\n", + " 1981 ctgaaaaaga aaagagaagt gatcatttaa aaagtataca atcagaagtt agcaacttgt\n", + " 2041 ggaataagct tcaagtttct cccaatgaac aaagtcaatt tggcgattca tcaaacatta\n", + " 2101 atcaagaaaa tatttcatta tgggaaactg aacttgaaaa acttcatcag ttaaaaaagg\n", + " 2161 agcatttacc cattttttta gaagactgtc gtcaacaaat tcttcagctt tgggattctc\n", + " 2221 tgttttattc agaagaacaa agaaagtcct ttacacctat gtatgaagac attattacag\n", + " 2281 agcaggttct tacggcccat gaaaactata taaagcaact agaggccgaa gtttctgcta\n", + " 2341 ataagtcctt tttaagctta attaatcgct atgcctcttt aatagaagga aagaaagagc\n", + " 2401 ttgaagctag ttctaatgat gcctctcgtc taacacaacg gggacgccgg gacccaggtt\n", + " 2461 tacttctacg tgaagagaaa atccgtaagc gactttctag agaacttcct aaggttcagt\n", + " 2521 cgctgcttat accagagatt acagcatggg aagaaagaaa tggaaggacg ttcctttttt\n", + " 2581 atgatgaacc acttctcaag atttgccaag aggccactca accaaaatca ttatatagaa\n", + " 2641 gtgcaagtgc tgccgcaaac cgcccgaaaa cagcaactac aacggactct gttaatagaa\n", + " 2701 caccttctca acgagggcgt gtagctgtac cttcaacacc aagtgttagg tccgcttctc\n", + " 2761 gagctatgac gagtccaagg acaccgcttc ctagagtaaa aaacactcaa aatccaagtc\n", + " 2821 gttccattag tgcagaaccg ccatcagcaa ccagtaccgc caatagaaga caccccactg\n", + " 2881 ctaatcgaat tgatataaac gctagattaa acagtgctag tcggtctcga agcgcgaaca\n", + " 2941 tgataagaca aggggcaaat ggtagtgaca gcaatatgtc ttcttcaccc gtttctggaa\n", + " 3001 attccaatac cccttttaac aagtttccaa attctgtatc tcgcaataca cattttgaat\n", + " 3061 ccaagtcacc gcacccaaat tactctcgaa ctcctcatga aacgtattca aaggcttcat\n", + " 3121 ctaagaacgt cccattaagt cctccaaagc agcgtgtagt taatgaacac gctttaaata\n", + " 3181 ttatgtcgga aaaattgcaa agaactaatc tgaaagaaca aacacccgag atggacattg\n", + " 3241 aaaacagctc gcagaacctt cctttttctc ctatgaagat atcccccata agagcatcac\n", + " 3301 ccgtaaagac aattccatca tcaccgtccc ccactaccaa cattttttct gctccactca\n", + " 3361 acaatattac aaattgtaca ccgatggagg atgaatgggg agaagaaggc ttttaagctt\n", + " 3421 cttatttacc taatcgatca aatttaaata tacatatttt tgcatatgaa tacagcatat\n", + " 3481 agataattca taaaagttta ttaactgagg tcataattaa aagactattt acacctaaaa\n", + " 3541 aaaaacgtgt atcaatagag ggaaaagaga agaattaaga acagaaagta accatagttt\n", + " 3601 tgttaaaata gcaatgtaaa aaaatattat gaaaagaaaa cgtatagcac attttgaaat\n", + " 3661 gtaaaagaat ctgagagagc gtgtgaatat ctagcaatta caagaagatg tattattcaa\n", + " 3721 aggctttgaa agaagcaaag gttcagagaa gtcattaaca aagtcatctc tcgagctttc\n", + " 3781 attttctaaa gctaaacgac tgactgtttc gaaaaggtca gtaacgtttg tattttcttt\n", + " 3841 tgcactagct tcaaaatgaa tcatatttga tccatgtttg gatttgcaat agtcaagagc\n", + " 3901 tcgatgaaga gatacggctc gtttagacgc gtctttgtcg atttgatttc caacgataat\n", + " 3961 gaaagggaat gcacattcat cttgtgaagt ttgatataaa aattcttgcc tccagttttc\n", + " 4021 tactgagtca aaagacttcg agttattcac attataaaca attacacaac aatcggcccc\n", + " 4081 tctgtaaaaa gccattccca ggctttgaaa tcgttcttga ccagcagtat cccaaagctg\n", + " 4141 tttataatta gcaaacgaat ttagatgggc ggaacttata ttggaactta cctgtaatgt\n", + " 4201 gaccaatttg tcgtcaacca caacgtcctt ggttaaaaaa tcagcaccga tggtagcttt\n", + " 4261 atattcgcga ctaaactttt gattgacgaa ctaaaatgac gatgttaaca aattgccaaa\n", + " 4321 gcaatactca tagagaagct gatgtaaaga tcgttaacca tatttgagct agtatttaat\n", + " 4381 aacaaagtga ataaatttta aaagcaatca ccttgtagcg acaaataaca acttatcgac\n", + " 4441 ataaaatcaa tgggaaattg cagtattgga ttttacagct caatacaaaa accaaaaaga\n", + " 4501 aaaatatact gaacgtataa aatttaacgc ttcaattg\n", + "//\n" + ] + } + ], + "source": [ + "# Parsing the files\n", + "pFA6akanMX6_path = \"./pFA6a-kanMX6.gb\"\n", + "ase1_path = \"./CU329670.gb\"\n", + "vector = parse(pFA6akanMX6_path)[0]\n", + "pombe_chromosome_I = parse(ase1_path)[0]\n", + "\n", + "# Printing the parsed files\n", + "\n", + "print(vector.format(\"gb\"))\n", + "print(pombe_chromosome_I.format(\"gb\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ACCATGTCGACATGCAAACAGTAATGATGGA , Tm: 57.24061148156318\n", + "GGCGCGCCATTAAAAGCCTTCTTCTCCC , Tm: 56.64459495003314\n" + ] + } + ], + "source": [ + "from pydna.design import primer_design\n", + "#Finding the feature containing the CDS with ase1 as a type qualifier\n", + "gene = next(f for f in pombe_chromosome_I.features if f.type == \"CDS\" and\n", + " \"gene\" in f.qualifiers and\n", + " \"ase1\" in f.qualifiers[\"gene\"])\n", + "\n", + "# Using the primer_design function to design primers to amplify the CDS\n", + "# `min` and `max` can be used on a SeqFeature to get the start (leftmost) and end (rightmost) positions\n", + "# this works both on feature with SimpleLocation and CompoundLocation\n", + "amplicon = primer_design(pombe_chromosome_I[min(gene):max(gene)], target_tm=55)\n", + "\n", + "fwd_align, rvs_align = amplicon.primers()\n", + "fwd_primer_ase1 = Dseqrecord(\"ACCATGTCGAC\") + fwd_align # Adding a SalI cut site\n", + "rvs_primer_ase1 = Dseqrecord(\"GGCGCGCCAT\") + rvs_align # Adding a AscI cut site\n", + "\n", + "# Printing out the primers\n", + "\n", + "print(fwd_primer_ase1.seq, ', Tm: ', tm_default(fwd_align))\n", + "print(rvs_primer_ase1.seq, ', Tm: ', tm_default(rvs_align))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS 2263bp_PCR_prod 2263 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION pcr_product_description_description.\n", + "ACCESSION 2263bp\n", + "VERSION 2263bp\n", + "DBLINK BioProject: PRJNA13836\n", + " BioSample: SAMEA3138176\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " CDS join(12..435,483..2254)\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " /codon_start=1\n", + " /product=\"antiparallel microtubule cross-linking factor\n", + " Ase1\"\n", + " /protein_id=\"CAC21482.1\"\n", + " /translation=\"MQTVMMDDIQSTDSIAEKDNHSNNESNFTWKAFREQVEKHFSKIE\n", + " RLHQVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIRFLVSSLKLTD\n", + " DTSSLKIESPLIQCLNRLSMVEGQYMAQYDQKLSTIKEMYHKLESYCNRLGSPFVLPDF\n", + " ENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYE\n", + " QLLESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP\n", + " NEQSQFGDSSNINQENISLWETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQ\n", + " RKSFTPMYEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLIEGKKELEASSN\n", + " DASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQSLLIPEITAWEERNGRTFLFYDEPL\n", + " LKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMT\n", + " SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIR\n", + " QGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSK\n", + " NVPLSPPKQRVVNEHALNIMSEKLQRTNLKEQTPEMDIENSSQNLPFSPMKISPIRASP\n", + " VKTIPSSPSPTTNIFSAPLNNITNCTPMEDEWGEEGF\"\n", + " primer_bind 12..31\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer\n", + " sequence:ACCATGTCGACATGCAAACAGTAATGATGGA\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " primer_bind complement(2236..2254)\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer\n", + " sequence:GGCGCGCCATTAAAAGCCTTCTTCTCCC\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 accatgtcga catgcaaaca gtaatgatgg atgacattca aagcactgat tctattgctg\n", + " 61 aaaaagataa tcactctaat aatgaatcta actttacttg gaaagcgttt cgtgaacaag\n", + " 121 tggaaaagca tttttctaaa attgaaaggc ttcaccaagt ccttggaaca gatggagaca\n", + " 181 attcatcatt atttgagttg tttacaacgg caatgaatgc ccagcttcat gaaatggaac\n", + " 241 agtgccagaa aaaacttgaa gatgactgtc agcaaagaat tgattcaatc agatttttgg\n", + " 301 tttcctcatt aaagttaacg gatgatactt ctagtctcaa aattgagtct cctttaattc\n", + " 361 agtgtttgaa tcgtttgtca atggtagaag gacaatatat ggcacagtat gatcaaaagt\n", + " 421 taagtacgat taaaggtatg taatcgtctt taatttagac ttgtgtttta actgatgtat\n", + " 481 agaaatgtat cacaaattgg agtcatattg taaccgctta ggaagtccgt tcgttttacc\n", + " 541 tgattttgag aattcatttt tatctgatgt atccgatgct tttactgaat ctttgagagg\n", + " 601 acgcatcaac gaagccgaaa aggagattga tgcgagatta gaggttatta attcctttga\n", + " 661 agaagaaatt ttgggtttgt ggtctgaact cggtgttgag cccgctgatg ttccacaata\n", + " 721 cgaacaattg cttgaatccc atactaatcg accaaatgat gtttatgtta ctcaagaact\n", + " 781 tatcgaccaa ctttgcaagc aaaaagaagt tttttccgct gaaaaagaaa agagaagtga\n", + " 841 tcatttaaaa agtatacaat cagaagttag caacttgtgg aataagcttc aagtttctcc\n", + " 901 caatgaacaa agtcaatttg gcgattcatc aaacattaat caagaaaata tttcattatg\n", + " 961 ggaaactgaa cttgaaaaac ttcatcagtt aaaaaaggag catttaccca tttttttaga\n", + " 1021 agactgtcgt caacaaattc ttcagctttg ggattctctg ttttattcag aagaacaaag\n", + " 1081 aaagtccttt acacctatgt atgaagacat tattacagag caggttctta cggcccatga\n", + " 1141 aaactatata aagcaactag aggccgaagt ttctgctaat aagtcctttt taagcttaat\n", + " 1201 taatcgctat gcctctttaa tagaaggaaa gaaagagctt gaagctagtt ctaatgatgc\n", + " 1261 ctctcgtcta acacaacggg gacgccggga cccaggttta cttctacgtg aagagaaaat\n", + " 1321 ccgtaagcga ctttctagag aacttcctaa ggttcagtcg ctgcttatac cagagattac\n", + " 1381 agcatgggaa gaaagaaatg gaaggacgtt ccttttttat gatgaaccac ttctcaagat\n", + " 1441 ttgccaagag gccactcaac caaaatcatt atatagaagt gcaagtgctg ccgcaaaccg\n", + " 1501 cccgaaaaca gcaactacaa cggactctgt taatagaaca ccttctcaac gagggcgtgt\n", + " 1561 agctgtacct tcaacaccaa gtgttaggtc cgcttctcga gctatgacga gtccaaggac\n", + " 1621 accgcttcct agagtaaaaa acactcaaaa tccaagtcgt tccattagtg cagaaccgcc\n", + " 1681 atcagcaacc agtaccgcca atagaagaca ccccactgct aatcgaattg atataaacgc\n", + " 1741 tagattaaac agtgctagtc ggtctcgaag cgcgaacatg ataagacaag gggcaaatgg\n", + " 1801 tagtgacagc aatatgtctt cttcacccgt ttctggaaat tccaataccc cttttaacaa\n", + " 1861 gtttccaaat tctgtatctc gcaatacaca ttttgaatcc aagtcaccgc acccaaatta\n", + " 1921 ctctcgaact cctcatgaaa cgtattcaaa ggcttcatct aagaacgtcc cattaagtcc\n", + " 1981 tccaaagcag cgtgtagtta atgaacacgc tttaaatatt atgtcggaaa aattgcaaag\n", + " 2041 aactaatctg aaagaacaaa cacccgagat ggacattgaa aacagctcgc agaaccttcc\n", + " 2101 tttttctcct atgaagatat cccccataag agcatcaccc gtaaagacaa ttccatcatc\n", + " 2161 accgtccccc actaccaaca ttttttctgc tccactcaac aatattacaa attgtacacc\n", + " 2221 gatggaggat gaatggggag aagaaggctt ttaatggcgc gcc\n", + "//\n" + ] + } + ], + "source": [ + "# Performing a PCR to check that the primers are specific. An error message is returned if otherwise.\n", + "\n", + "pcr_product = pcr(fwd_primer_ase1, rvs_primer_ase1, pombe_chromosome_I)\n", + "\n", + "# Printing out the PCR results\n", + "\n", + "print(pcr_product.format(\"gb\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(Dseqrecord(-30), Dseqrecord(-3916))\n", + "(Dseqrecord(-10), Dseqrecord(-2255), Dseqrecord(-6))\n" + ] + } + ], + "source": [ + "# Cleaving the cloning vector with restriction enzymes\n", + "\n", + "plasmid_digests = vector.cut(SalI, AscI)\n", + "\n", + "# Cleaving the gene fragment with restriction enzymes\n", + "\n", + "gene_digests = Dseqrecord(pcr_product).cut(SalI, AscI)\n", + "\n", + "# Printing out the digests\n", + "print(plasmid_digests) \n", + "print(gene_digests)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS name 6163 bp DNA circular UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 52..1408\n", + " /label=\"kanMX\"\n", + " /note=\"yeast selectable marker conferring kanamycin\n", + " resistance (Wach et al., 1994)\"\n", + " promoter 52..395\n", + " /label=\"TEF promoter\"\n", + " /note=\"Ashbya gossypii TEF promoter\"\n", + " CDS 396..1205\n", + " /codon_start=1\n", + " /gene=\"aph(3')-Ia\"\n", + " /product=\"aminoglycoside phosphotransferase\"\n", + " /label=\"KanR\"\n", + " /note=\"confers resistance to kanamycin\"\n", + " /translation=\"MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP\n", + " DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA\n", + " FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD\n", + " FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD\n", + " RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF\"\n", + " primer_bind complement(463..482)\n", + " /label=\"Kan-R\"\n", + " /note=\"Kanamycin resistance gene, reverse primer\"\n", + " terminator 1211..1408\n", + " /label=\"TEF terminator\"\n", + " /note=\"Ashbya gossypii TEF terminator\"\n", + " primer_bind complement(1512..1531)\n", + " /label=\"T7\"\n", + " /note=\"T7 promoter, forward primer\"\n", + " promoter complement(1513..1531)\n", + " /label=\"T7 promoter\"\n", + " /note=\"promoter for bacteriophage T7 RNA polymerase\"\n", + " primer_bind complement(1618..1635)\n", + " /label=\"L4440\"\n", + " /note=\"L4440 vector, forward primer\"\n", + " rep_origin complement(1789..2377)\n", + " /direction=LEFT\n", + " /label=\"ori\"\n", + " /note=\"high-copy-number ColE1/pMB1/pBR322/pUC origin of\n", + " replication\"\n", + " primer_bind complement(1869..1888)\n", + " /label=\"pBR322ori-F\"\n", + " /note=\"pBR322 origin, forward primer\"\n", + " CDS complement(2548..3408)\n", + " /codon_start=1\n", + " /gene=\"bla\"\n", + " /product=\"beta-lactamase\"\n", + " /label=\"AmpR\"\n", + " /note=\"confers resistance to ampicillin, carbenicillin, and\n", + " related antibiotics\"\n", + " /translation=\"MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI\n", + " ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS\n", + " PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW\n", + " EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA\n", + " LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS\n", + " LIKHW\"\n", + " primer_bind 3171..3190\n", + " /label=\"Amp-R\"\n", + " /note=\"Ampicillin resistance gene, reverse primer\"\n", + " promoter complement(3409..3513)\n", + " /gene=\"bla\"\n", + " /label=\"AmpR promoter\"\n", + " primer_bind 3581..3599\n", + " /label=\"pBRforEco\"\n", + " /note=\"pBR322 vectors, upsteam of EcoRI site, forward\n", + " primer\"\n", + " primer_bind complement(3637..3659)\n", + " /label=\"pGEX 3'\"\n", + " /note=\"pGEX vectors, reverse primer\"\n", + " primer_bind 3759..3778\n", + " /label=\"pRS-marker\"\n", + " /note=\"pRS vectors, use to sequence yeast selectable\n", + " marker\"\n", + " promoter 3859..3877\n", + " /label=\"SP6 promoter\"\n", + " /note=\"promoter for bacteriophage SP6 RNA polymerase\"\n", + " primer_bind 3859..3876\n", + " /label=\"SP6\"\n", + " /note=\"SP6 promoter, forward primer\"\n", + " CDS join(3918..4341,4389..6160)\n", + " /gene=\"ase1\"\n", + " /locus_tag=\"SPOM_SPAPB1A10.09\"\n", + " /codon_start=1\n", + " /product=\"antiparallel microtubule cross-linking factor\n", + " Ase1\"\n", + " /protein_id=\"CAC21482.1\"\n", + " /translation=\"MQTVMMDDIQSTDSIAEKDNHSNNESNFTWKAFREQVEKHFSKIE\n", + " RLHQVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIRFLVSSLKLTD\n", + " DTSSLKIESPLIQCLNRLSMVEGQYMAQYDQKLSTIKEMYHKLESYCNRLGSPFVLPDF\n", + " ENSFLSDVSDAFTESLRGRINEAEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYE\n", + " QLLESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP\n", + " NEQSQFGDSSNINQENISLWETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQ\n", + " RKSFTPMYEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLIEGKKELEASSN\n", + " DASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQSLLIPEITAWEERNGRTFLFYDEPL\n", + " LKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMT\n", + " SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIR\n", + " QGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSK\n", + " NVPLSPPKQRVVNEHALNIMSEKLQRTNLKEQTPEMDIENSSQNLPFSPMKISPIRASP\n", + " VKTIPSSPSPTTNIFSAPLNNITNCTPMEDEWGEEGF\"\n", + " primer_bind 3918..3937\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer\n", + " sequence:ACCATGTCGACATGCAAACAGTAATGATGGA\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " primer_bind complement(6142..6160)\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer\n", + " sequence:GGCGCGCCATTAAAAGCCTTCTTCTCCC\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 cgcgccagat ctgtttagct tgcctcgtcc ccgccgggtc acccggccag cgacatggag\n", + " 61 gcccagaata ccctccttga cagtcttgac gtgcgcagct caggggcatg atgtgactgt\n", + " 121 cgcccgtaca tttagcccat acatccccat gtataatcat ttgcatccat acattttgat\n", + " 181 ggccgcacgg cgcgaagcaa aaattacggc tcctcgctgc agacctgcga gcagggaaac\n", + " 241 gctcccctca cagacgcgtt gaattgtccc cacgccgcgc ccctgtagag aaatataaaa\n", + " 301 ggttaggatt tgccactgag gttcttcttt catatacttc cttttaaaat cttgctagga\n", + " 361 tacagttctc acatcacatc cgaacataaa caaccatggg taaggaaaag actcacgttt\n", + " 421 cgaggccgcg attaaattcc aacatggatg ctgatttata tgggtataaa tgggctcgcg\n", + " 481 ataatgtcgg gcaatcaggt gcgacaatct atcgattgta tgggaagccc gatgcgccag\n", + " 541 agttgtttct gaaacatggc aaaggtagcg ttgccaatga tgttacagat gagatggtca\n", + " 601 gactaaactg gctgacggaa tttatgcctc ttccgaccat caagcatttt atccgtactc\n", + " 661 ctgatgatgc atggttactc accactgcga tccccggcaa aacagcattc caggtattag\n", + " 721 aagaatatcc tgattcaggt gaaaatattg ttgatgcgct ggcagtgttc ctgcgccggt\n", + " 781 tgcattcgat tcctgtttgt aattgtcctt ttaacagcga tcgcgtattt cgtctcgctc\n", + " 841 aggcgcaatc acgaatgaat aacggtttgg ttgatgcgag tgattttgat gacgagcgta\n", + " 901 atggctggcc tgttgaacaa gtctggaaag aaatgcataa gcttttgcca ttctcaccgg\n", + " 961 attcagtcgt cactcatggt gatttctcac ttgataacct tatttttgac gaggggaaat\n", + " 1021 taataggttg tattgatgtt ggacgagtcg gaatcgcaga ccgataccag gatcttgcca\n", + " 1081 tcctatggaa ctgcctcggt gagttttctc cttcattaca gaaacggctt tttcaaaaat\n", + " 1141 atggtattga taatcctgat atgaataaat tgcagtttca tttgatgctc gatgagtttt\n", + " 1201 tctaatcagt actgacaata aaaagattct tgttttcaag aacttgtcat ttgtatagtt\n", + " 1261 tttttatatt gtagttgttc tattttaatc aaatgttagc gtgatttata ttttttttcg\n", + " 1321 cctcgacatc atctgcccag atgcgaagtt aagtgcgcag aaagtaatat catgcgtcaa\n", + " 1381 tcgtatgtga atgctggtcg ctatactgct gtcgattcga tactaacgcc gccatccagt\n", + " 1441 ttaaacgagc tcgaattcat cgatgatatc agatccacta gtggcctatg cggccgcgga\n", + " 1501 tctgccggtc tccctatagt gagtcgtatt aatttcgata agccaggtta acctgcatta\n", + " 1561 atgaatcggc caacgcgcgg ggagaggcgg tttgcgtatt gggcgctctt ccgcttcctc\n", + " 1621 gctcactgac tcgctgcgct cggtcgttcg gctgcggcga gcggtatcag ctcactcaaa\n", + " 1681 ggcggtaata cggttatcca cagaatcagg ggataacgca ggaaagaaca tgtgagcaaa\n", + " 1741 aggccagcaa aaggccagga accgtaaaaa ggccgcgttg ctggcgtttt tccataggct\n", + " 1801 ccgcccccct gacgagcatc acaaaaatcg acgctcaagt cagaggtggc gaaacccgac\n", + " 1861 aggactataa agataccagg cgtttccccc tggaagctcc ctcgtgcgct ctcctgttcc\n", + " 1921 gaccctgccg cttaccggat acctgtccgc ctttctccct tcgggaagcg tggcgctttc\n", + " 1981 tcatagctca cgctgtaggt atctcagttc ggtgtaggtc gttcgctcca agctgggctg\n", + " 2041 tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta tccggtaact atcgtcttga\n", + " 2101 gtccaacccg gtaagacacg acttatcgcc actggcagca gccactggta acaggattag\n", + " 2161 cagagcgagg tatgtaggcg gtgctacaga gttcttgaag tggtggccta actacggcta\n", + " 2221 cactagaaga acagtatttg gtatctgcgc tctgctgaag ccagttacct tcggaaaaag\n", + " 2281 agttggtagc tcttgatccg gcaaacaaac caccgctggt agcggtggtt tttttgtttg\n", + " 2341 caagcagcag attacgcgca gaaaaaaagg atctcaagaa gatcctttga tcttttctac\n", + " 2401 ggggtctgac gctcagtgga acgaaaactc acgttaaggg attttggtca tgagattatc\n", + " 2461 aaaaaggatc ttcacctaga tccttttaaa ttaaaaatga agttttaaat caatctaaag\n", + " 2521 tatatatgag taaacttggt ctgacagtta ccaatgctta atcagtgagg cacctatctc\n", + " 2581 agcgatctgt ctatttcgtt catccatagt tgcctgactc cccgtcgtgt agataactac\n", + " 2641 gatacgggag ggcttaccat ctggccccag tgctgcaatg ataccgcgag acccacgctc\n", + " 2701 accggctcca gatttatcag caataaacca gccagccgga agggccgagc gcagaagtgg\n", + " 2761 tcctgcaact ttatccgcct ccatccagtc tattaattgt tgccgggaag ctagagtaag\n", + " 2821 tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt gctacaggca tcgtggtgtc\n", + " 2881 acgctcgtcg tttggtatgg cttcattcag ctccggttcc caacgatcaa ggcgagttac\n", + " 2941 atgatccccc atgttgtgca aaaaagcggt tagctccttc ggtcctccga tcgttgtcag\n", + " 3001 aagtaagttg gccgcagtgt tatcactcat ggttatggca gcactgcata attctcttac\n", + " 3061 tgtcatgcca tccgtaagat gcttttctgt gactggtgag tactcaacca agtcattctg\n", + " 3121 agaatagtgt atgcggcgac cgagttgctc ttgcccggcg tcaatacggg ataataccgc\n", + " 3181 gccacatagc agaactttaa aagtgctcat cattggaaaa cgttcttcgg ggcgaaaact\n", + " 3241 ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa cccactcgtg cacccaactg\n", + " 3301 atcttcagca tcttttactt tcaccagcgt ttctgggtga gcaaaaacag gaaggcaaaa\n", + " 3361 tgccgcaaaa aagggaataa gggcgacacg gaaatgttga atactcatac tcttcctttt\n", + " 3421 tcaatattat tgaagcattt atcagggtta ttgtctcatg agcggataca tatttgaatg\n", + " 3481 tatttagaaa aataaacaaa taggggttcc gcgcacattt ccccgaaaag tgccacctga\n", + " 3541 cgtctaagaa accattatta tcatgacatt aacctataaa aataggcgta tcacgaggcc\n", + " 3601 ctttcgtctc gcgcgtttcg gtgatgacgg tgaaaacctc tgacacatgc agctcccgga\n", + " 3661 gacggtcaca gcttgtctgt aagcggatgc cgggagcaga caagcccgtc agggcgcgtc\n", + " 3721 agcgggtgtt ggcgggtgtc ggggctggct taactatgcg gcatcagagc agattgtact\n", + " 3781 gagagtgcac catatggaca tattgtcgtt agaacgcggc tacaattaat acataacctt\n", + " 3841 atgtatcata cacatacgat ttaggtgaca ctatagaacg cggccgccag ctgaagcttc\n", + " 3901 gtacgctgca ggtcgacatg caaacagtaa tgatggatga cattcaaagc actgattcta\n", + " 3961 ttgctgaaaa agataatcac tctaataatg aatctaactt tacttggaaa gcgtttcgtg\n", + " 4021 aacaagtgga aaagcatttt tctaaaattg aaaggcttca ccaagtcctt ggaacagatg\n", + " 4081 gagacaattc atcattattt gagttgttta caacggcaat gaatgcccag cttcatgaaa\n", + " 4141 tggaacagtg ccagaaaaaa cttgaagatg actgtcagca aagaattgat tcaatcagat\n", + " 4201 ttttggtttc ctcattaaag ttaacggatg atacttctag tctcaaaatt gagtctcctt\n", + " 4261 taattcagtg tttgaatcgt ttgtcaatgg tagaaggaca atatatggca cagtatgatc\n", + " 4321 aaaagttaag tacgattaaa ggtatgtaat cgtctttaat ttagacttgt gttttaactg\n", + " 4381 atgtatagaa atgtatcaca aattggagtc atattgtaac cgcttaggaa gtccgttcgt\n", + " 4441 tttacctgat tttgagaatt catttttatc tgatgtatcc gatgctttta ctgaatcttt\n", + " 4501 gagaggacgc atcaacgaag ccgaaaagga gattgatgcg agattagagg ttattaattc\n", + " 4561 ctttgaagaa gaaattttgg gtttgtggtc tgaactcggt gttgagcccg ctgatgttcc\n", + " 4621 acaatacgaa caattgcttg aatcccatac taatcgacca aatgatgttt atgttactca\n", + " 4681 agaacttatc gaccaacttt gcaagcaaaa agaagttttt tccgctgaaa aagaaaagag\n", + " 4741 aagtgatcat ttaaaaagta tacaatcaga agttagcaac ttgtggaata agcttcaagt\n", + " 4801 ttctcccaat gaacaaagtc aatttggcga ttcatcaaac attaatcaag aaaatatttc\n", + " 4861 attatgggaa actgaacttg aaaaacttca tcagttaaaa aaggagcatt tacccatttt\n", + " 4921 tttagaagac tgtcgtcaac aaattcttca gctttgggat tctctgtttt attcagaaga\n", + " 4981 acaaagaaag tcctttacac ctatgtatga agacattatt acagagcagg ttcttacggc\n", + " 5041 ccatgaaaac tatataaagc aactagaggc cgaagtttct gctaataagt cctttttaag\n", + " 5101 cttaattaat cgctatgcct ctttaataga aggaaagaaa gagcttgaag ctagttctaa\n", + " 5161 tgatgcctct cgtctaacac aacggggacg ccgggaccca ggtttacttc tacgtgaaga\n", + " 5221 gaaaatccgt aagcgacttt ctagagaact tcctaaggtt cagtcgctgc ttataccaga\n", + " 5281 gattacagca tgggaagaaa gaaatggaag gacgttcctt ttttatgatg aaccacttct\n", + " 5341 caagatttgc caagaggcca ctcaaccaaa atcattatat agaagtgcaa gtgctgccgc\n", + " 5401 aaaccgcccg aaaacagcaa ctacaacgga ctctgttaat agaacacctt ctcaacgagg\n", + " 5461 gcgtgtagct gtaccttcaa caccaagtgt taggtccgct tctcgagcta tgacgagtcc\n", + " 5521 aaggacaccg cttcctagag taaaaaacac tcaaaatcca agtcgttcca ttagtgcaga\n", + " 5581 accgccatca gcaaccagta ccgccaatag aagacacccc actgctaatc gaattgatat\n", + " 5641 aaacgctaga ttaaacagtg ctagtcggtc tcgaagcgcg aacatgataa gacaaggggc\n", + " 5701 aaatggtagt gacagcaata tgtcttcttc acccgtttct ggaaattcca ataccccttt\n", + " 5761 taacaagttt ccaaattctg tatctcgcaa tacacatttt gaatccaagt caccgcaccc\n", + " 5821 aaattactct cgaactcctc atgaaacgta ttcaaaggct tcatctaaga acgtcccatt\n", + " 5881 aagtcctcca aagcagcgtg tagttaatga acacgcttta aatattatgt cggaaaaatt\n", + " 5941 gcaaagaact aatctgaaag aacaaacacc cgagatggac attgaaaaca gctcgcagaa\n", + " 6001 ccttcctttt tctcctatga agatatcccc cataagagca tcacccgtaa agacaattcc\n", + " 6061 atcatcaccg tcccccacta ccaacatttt ttctgctcca ctcaacaata ttacaaattg\n", + " 6121 tacaccgatg gaggatgaat ggggagaaga aggcttttaa tgg\n", + "//\n" + ] + } + ], + "source": [ + "# Ligating, then circularising the synthetic plasmid\n", + "\n", + "synthetic_vector = plasmid_digests[1] + gene_digests [1]\n", + "synthetic_vector = synthetic_vector.looped()\n", + "\n", + "# Printing out the completed cloning vector\n", + "\n", + "print(synthetic_vector.format(\"gb\"))" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Gibson.ipynb b/docs/notebooks/Gibson.ipynb new file mode 100644 index 00000000..2fb3dad2 --- /dev/null +++ b/docs/notebooks/Gibson.ipynb @@ -0,0 +1,167 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Gibson Assembly in pydna\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "Gibson Assembly is a powerful method to assemble multiple DNA fragments into a single, continuous sequence in a seamless, one-step reaction. Developed by Daniel Gibson and colleagues in 2009, this method has been widely applied to work in molecular cloning, biotechnology, and synthetic biology. \n", + "\n", + "`pydna` provides the `Assembly` class to simulate the assembly of DNA sequences. Below is an example fpr performing Gibson Assembly with pre-existing DNA fragments, followed by primer design for generating these fragments via the `pcr` method, if needed.\n", + "\n", + "The `Assembly` takes the following arguments:\n", + " * `frags`: list of DNA fragments as `Dseqrecord` objects\n", + " * `limit`: the minimum sequence homology required.\n", + " * `algorithm`: the function used to find homology regions between DNA fragments. For Gibson Assembly, we use the `terminal_overlap` function, which finds homology regions only at the terminal regions. By default, the `Assembly` class uses the `common_sub_strings` function to find homology regions, which finds homology anywhere, as it could happen in a homologous recombination event.\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Assembly\n", + "fragments..: 33bp 34bp 35bp\n", + "limit(bp)..: 14\n", + "G.nodes....: 6\n", + "algorithm..: terminal_overlap\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.assembly import Assembly\n", + "from pydna.common_sub_strings import terminal_overlap\n", + "\n", + "#Creating example Dseqrecord sequences\n", + "fragment1 = Dseqrecord(\"acgatgctatactgCCCCCtgtgctgtgctcta\")\n", + "fragment2 = Dseqrecord(\"tgtgctgtgctctaTTTTTtattctggctgtatc\")\n", + "fragment3 = Dseqrecord(\"tattctggctgtatcGGGGGtacgatgctatactg\")\n", + "\n", + "#Creating a list of sequences to assemble\n", + "fragments = [fragment1, fragment2, fragment3]\n", + "\n", + "#Performing Gibson assembly, with a minimum shared homology of 14bp\n", + "assembly = Assembly(fragments, limit=14, algorithm=terminal_overlap)\n", + "\n", + "#Displaying the assembled product\n", + "print(assembly)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The printed output shows the length of each fragment provided to the assembly, the minimum length required for sequence homology search, the number of nodes (number of overlapping regions), and the algorithm used for sequence homology search. Please refer to the full `Assembly` module documentation for more information on the algorithm applied.\n", + "\n", + "To make a circular sequence from an `Assembly`, pydna provides the `assemble_circular` method. The assembled sequence can be printed as normal, as `Dseqrecord` objects. Note that the `assemble_circular` method returns a list, where the two elements are reverse complement of each other." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: True\n", + "size: 59\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(o59)\n", + "acga..GGGt\n", + "tgct..CCCa\n", + "\n", + "Dseqrecord\n", + "circular: True\n", + "size: 59\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(o59)\n", + "taga..AAAA\n", + "atct..TTTT\n" + ] + } + ], + "source": [ + "from pydna.contig import Contig\n", + "\n", + "#Circularizing the assembled sequence\n", + "assembly_circ = assembly.assemble_circular()\n", + "\n", + "#Printing the sequence records\n", + "print(assembly_circ[0])\n", + "print()\n", + "print(assembly_circ[1])\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Please refer to the Example_Gibson page for an example of a completed workflow for modelling Gibson Assembly using pydna. " + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.3" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Importing_Seqs.ipynb b/docs/notebooks/Importing_Seqs.ipynb new file mode 100755 index 00000000..fa7cd1a9 --- /dev/null +++ b/docs/notebooks/Importing_Seqs.ipynb @@ -0,0 +1,408 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Importing and viewing sequence files in pydna\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "pydna can be used to work with FASTA, Genbank, EMBL, and snapgene files (.fasta, .gb, .embl, .dna). You can read these files into a `Dseqrecord` that one can view and work with. You can also instantiate `Dseqrecord` objects with strings.\n", + "\n", + "## Importing Sequence Files\n", + "\n", + "To import files into pydna is simple. pydna provides the `parse` method to read all DNA sequences in a file into a list. As an input, `parse` can take:\n", + "\n", + "* The path to a file from your computer\n", + "* A python string with the file content.\n", + "\n", + "The following code shows an example of how to use the `parse` function to import a FASTA file." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + ">lcl|U49845.1_cds_AAA98665.1_1 [protein=TCP1-beta] [frame=3] [protein_id=AAA98665.1] [location=<1..206] [gbkey=CDS]\n", + "TCCTCCATATACAACGGTATCTCCACCTCAGGTTTAGATCTCAACAACGGAACCATTGCC\n", + "GACATGAGACAGTTAGGTATCGTCGAGAGTTACAAGCTAAAACGAGCAGTAGTCAGCTCT\n", + "GCATCTGAAGCCGCTGAAGTTCTACTAAGGGTGGATAACATCATCCGTGCAAGACCAAGA\n", + "ACCGCCAATAGACAACATATGTAA\n" + ] + } + ], + "source": [ + "from pydna.parsers import parse\n", + "\n", + "#Import your file into python using its path\n", + "file_path = \"./U49845.fasta\"\n", + "files = parse(file_path)\n", + "\n", + "#Show your FASTA file in python\n", + "print(files[0].format(\"fasta\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Note that `parse` returns a `list` object, hence requiring `[0]` to take the first element of the list. When you have a FASTA file that contains multiple sequences, you can index the list accordingly (e.g `[0]`, `[1]`, ...)\n", + "\n", + "The last line of code uses the `format` method to generate a string representation of the sequence as a FASTA file." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Another example, using a GenBank file ([U49845](https://www.ncbi.nlm.nih.gov/nucleotide/U49845)), is shown below." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "LOCUS SCU49845 5028 bp DNA linear PLN 29-OCT-2018\n", + "DEFINITION Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p\n", + " (AXL2) and Rev7p (REV7) genes, complete cds.\n", + "ACCESSION U49845\n", + "VERSION U49845.1\n", + "KEYWORDS .\n", + "SOURCE Saccharomyces cerevisiae (brewer's yeast)\n", + " ORGANISM Saccharomyces cerevisiae\n", + " Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;\n", + " Saccharomycetes; Saccharomycetales; Saccharomycetaceae;\n", + " Saccharomyces.\n", + "REFERENCE 1 (bases 1 to 5028)\n", + " AUTHORS Roemer,T., Madden,K., Chang,J. and Snyder,M.\n", + " TITLE Selection of axial growth sites in yeast requires Axl2p, a novel\n", + " plasma membrane glycoprotein\n", + " JOURNAL Genes Dev. 10 (7), 777-793 (1996)\n", + " PUBMED 8846915\n", + "REFERENCE 2 (bases 1 to 5028)\n", + " AUTHORS Roemer,T.\n", + " TITLE Direct Submission\n", + " JOURNAL Submitted (22-FEB-1996) Biology, Yale University, New Haven, CT\n", + " 06520, USA\n", + "FEATURES Location/Qualifiers\n", + " source 1..5028\n", + " /organism=\"Saccharomyces cerevisiae\"\n", + " /mol_type=\"genomic DNA\"\n", + " /db_xref=\"taxon:4932\"\n", + " /chromosome=\"IX\"\n", + " mRNA <1..>206\n", + " /product=\"TCP1-beta\"\n", + " CDS <1..206\n", + " /codon_start=3\n", + " /product=\"TCP1-beta\"\n", + " /protein_id=\"AAA98665.1\"\n", + " /translation=\"SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAA\n", + " EVLLRVDNIIRARPRTANRQHM\"\n", + " gene <687..>3158\n", + " /gene=\"AXL2\"\n", + " mRNA <687..>3158\n", + " /gene=\"AXL2\"\n", + " /product=\"Axl2p\"\n", + " CDS 687..3158\n", + " /gene=\"AXL2\"\n", + " /note=\"plasma membrane glycoprotein\"\n", + " /codon_start=1\n", + " /product=\"Axl2p\"\n", + " /protein_id=\"AAA98666.1\"\n", + " /translation=\"MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFT\n", + " FQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVI\n", + " LEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFN\n", + " VTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYS\n", + " FVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDD\n", + " PISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFN\n", + " FEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKF\n", + " QSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSS\n", + " HHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGV\n", + " ILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSY\n", + " DDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKP\n", + " PVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKL\n", + " FDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQ\n", + " SGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQV\n", + " KDIHGRIPEML\"\n", + " gene complement(<3300..>4037)\n", + " /gene=\"REV7\"\n", + " mRNA complement(<3300..>4037)\n", + " /gene=\"REV7\"\n", + " /product=\"Rev7p\"\n", + " CDS complement(3300..4037)\n", + " /gene=\"REV7\"\n", + " /codon_start=1\n", + " /product=\"Rev7p\"\n", + " /protein_id=\"AAA98667.1\"\n", + " /translation=\"MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQF\n", + " VPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKD\n", + " DQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVD\n", + " SLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISG\n", + " DDKILNGVYSQYEEGESIFGSLF\"\n", + "ORIGIN\n", + " 1 gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg\n", + " 61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct\n", + " 121 ctgcatctga agccgctgaa gttctactaa gggtggataa catcatccgt gcaagaccaa\n", + " 181 gaaccgccaa tagacaacat atgtaacata tttaggatat acctcgaaaa taataaaccg\n", + " 241 ccacactgtc attattataa ttagaaacag aacgcaaaaa ttatccacta tataattcaa\n", + " 301 agacgcgaaa aaaaaagaac aacgcgtcat agaacttttg gcaattcgcg tcacaaataa\n", + " 361 attttggcaa cttatgtttc ctcttcgagc agtactcgag ccctgtctca agaatgtaat\n", + " 421 aatacccatc gtaggtatgg ttaaagatag catctccaca acctcaaagc tccttgccga\n", + " 481 gagtcgccct cctttgtcga gtaattttca cttttcatat gagaacttat tttcttattc\n", + " 541 tttactctca catcctgtag tgattgacac tgcaacagcc accatcacta gaagaacaga\n", + " 601 acaattactt aatagaaaaa ttatatcttc ctcgaaacga tttcctgctt ccaacatcta\n", + " 661 cgtatatcaa gaagcattca cttaccatga cacagcttca gatttcatta ttgctgacag\n", + " 721 ctactatatc actactccat ctagtagtgg ccacgcccta tgaggcatat cctatcggaa\n", + " 781 aacaataccc cccagtggca agagtcaatg aatcgtttac atttcaaatt tccaatgata\n", + " 841 cctataaatc gtctgtagac aagacagctc aaataacata caattgcttc gacttaccga\n", + " 901 gctggctttc gtttgactct agttctagaa cgttctcagg tgaaccttct tctgacttac\n", + " 961 tatctgatgc gaacaccacg ttgtatttca atgtaatact cgagggtacg gactctgccg\n", + " 1021 acagcacgtc tttgaacaat acataccaat ttgttgttac aaaccgtcca tccatctcgc\n", + " 1081 tatcgtcaga tttcaatcta ttggcgttgt taaaaaacta tggttatact aacggcaaaa\n", + " 1141 acgctctgaa actagatcct aatgaagtct tcaacgtgac ttttgaccgt tcaatgttca\n", + " 1201 ctaacgaaga atccattgtg tcgtattacg gacgttctca gttgtataat gcgccgttac\n", + " 1261 ccaattggct gttcttcgat tctggcgagt tgaagtttac tgggacggca ccggtgataa\n", + " 1321 actcggcgat tgctccagaa acaagctaca gttttgtcat catcgctaca gacattgaag\n", + " 1381 gattttctgc cgttgaggta gaattcgaat tagtcatcgg ggctcaccag ttaactacct\n", + " 1441 ctattcaaaa tagtttgata atcaacgtta ctgacacagg taacgtttca tatgacttac\n", + " 1501 ctctaaacta tgtttatctc gatgacgatc ctatttcttc tgataaattg ggttctataa\n", + " 1561 acttattgga tgctccagac tgggtggcat tagataatgc taccatttcc gggtctgtcc\n", + " 1621 cagatgaatt actcggtaag aactccaatc ctgccaattt ttctgtgtcc atttatgata\n", + " 1681 cttatggtga tgtgatttat ttcaacttcg aagttgtctc cacaacggat ttgtttgcca\n", + " 1741 ttagttctct tcccaatatt aacgctacaa ggggtgaatg gttctcctac tattttttgc\n", + " 1801 cttctcagtt tacagactac gtgaatacaa acgtttcatt agagtttact aattcaagcc\n", + " 1861 aagaccatga ctgggtgaaa ttccaatcat ctaatttaac attagctgga gaagtgccca\n", + " 1921 agaatttcga caagctttca ttaggtttga aagcgaacca aggttcacaa tctcaagagc\n", + " 1981 tatattttaa catcattggc atggattcaa agataactca ctcaaaccac agtgcgaatg\n", + " 2041 caacgtccac aagaagttct caccactcca cctcaacaag ttcttacaca tcttctactt\n", + " 2101 acactgcaaa aatttcttct acctccgctg ctgctacttc ttctgctcca gcagcgctgc\n", + " 2161 cagcagccaa taaaacttca tctcacaata aaaaagcagt agcaattgcg tgcggtgttg\n", + " 2221 ctatcccatt aggcgttatc ctagtagctc tcatttgctt cctaatattc tggagacgca\n", + " 2281 gaagggaaaa tccagacgat gaaaacttac cgcatgctat tagtggacct gatttgaata\n", + " 2341 atcctgcaaa taaaccaaat caagaaaacg ctacaccttt gaacaacccc tttgatgatg\n", + " 2401 atgcttcctc gtacgatgat acttcaatag caagaagatt ggctgctttg aacactttga\n", + " 2461 aattggataa ccactctgcc actgaatctg atatttccag cgtggatgaa aagagagatt\n", + " 2521 ctctatcagg tatgaataca tacaatgatc agttccaatc ccaaagtaaa gaagaattat\n", + " 2581 tagcaaaacc cccagtacag cctccagaga gcccgttctt tgacccacag aataggtctt\n", + " 2641 cttctgtgta tatggatagt gaaccagcag taaataaatc ctggcgatat actggcaacc\n", + " 2701 tgtcaccagt ctctgatatt gtcagagaca gttacggatc acaaaaaact gttgatacag\n", + " 2761 aaaaactttt cgatttagaa gcaccagaga aggaaaaacg tacgtcaagg gatgtcacta\n", + " 2821 tgtcttcact ggacccttgg aacagcaata ttagcccttc tcccgtaaga aaatcagtaa\n", + " 2881 caccatcacc atataacgta acgaagcatc gtaaccgcca cttacaaaat attcaagact\n", + " 2941 ctcaaagcgg taaaaacgga atcactccca caacaatgtc aacttcatct tctgacgatt\n", + " 3001 ttgttccggt taaagatggt gaaaattttt gctgggtcca tagcatggaa ccagacagaa\n", + " 3061 gaccaagtaa gaaaaggtta gtagattttt caaataagag taatgtcaat gttggtcaag\n", + " 3121 ttaaggacat tcacggacgc atcccagaaa tgctgtgatt atacgcaacg atattttgct\n", + " 3181 taattttatt ttcctgtttt attttttatt agtggtttac agatacccta tattttattt\n", + " 3241 agtttttata cttagagaca tttaatttta attccattct tcaaatttca tttttgcact\n", + " 3301 taaaacaaag atccaaaaat gctctcgccc tcttcatatt gagaatacac tccattcaaa\n", + " 3361 attttgtcgt caccgctgat taatttttca ctaaactgat gaataatcaa aggccccacg\n", + " 3421 tcagaaccga ctaaagaagt gagttttatt ttaggaggtt gaaaaccatt attgtctggt\n", + " 3481 aaattttcat cttcttgaca tttaacccag tttgaatccc tttcaatttc tgctttttcc\n", + " 3541 tccaaactat cgaccctcct gtttctgtcc aacttatgtc ctagttccaa ttcgatcgca\n", + " 3601 ttaataactg cttcaaatgt tattgtgtca tcgttgactt taggtaattt ctccaaatgc\n", + " 3661 ataatcaaac tatttaagga agatcggaat tcgtcgaaca cttcagtttc cgtaatgatc\n", + " 3721 tgatcgtctt tatccacatg ttgtaattca ctaaaatcta aaacgtattt ttcaatgcat\n", + " 3781 aaatcgttct ttttattaat aatgcagatg gaaaatctgt aaacgtgcgt taatttagaa\n", + " 3841 agaacatcca gtataagttc ttctatatag tcaattaaag caggatgcct attaatggga\n", + " 3901 acgaactgcg gcaagttgaa tgactggtaa gtagtgtagt cgaatgactg aggtgggtat\n", + " 3961 acatttctat aaaataaaat caaattaatg tagcatttta agtataccct cagccacttc\n", + " 4021 tctacccatc tattcataaa gctgacgcaa cgattactat tttttttttc ttcttggatc\n", + " 4081 tcagtcgtcg caaaaacgta taccttcttt ttccgacctt ttttttagct ttctggaaaa\n", + " 4141 gtttatatta gttaaacagg gtctagtctt agtgtgaaag ctagtggttt cgattgactg\n", + " 4201 atattaagaa agtggaaatt aaattagtag tgtagacgta tatgcatatg tatttctcgc\n", + " 4261 ctgtttatgt ttctacgtac ttttgattta tagcaagggg aaaagaaata catactattt\n", + " 4321 tttggtaaag gtgaaagcat aatgtaaaag ctagaataaa atggacgaaa taaagagagg\n", + " 4381 cttagttcat cttttttcca aaaagcaccc aatgataata actaaaatga aaaggatttg\n", + " 4441 ccatctgtca gcaacatcag ttgtgtgagc aataataaaa tcatcacctc cgttgccttt\n", + " 4501 agcgcgtttg tcgtttgtat cttccgtaat tttagtctta tcaatgggaa tcataaattt\n", + " 4561 tccaatgaat tagcaatttc gtccaattct ttttgagctt cttcatattt gctttggaat\n", + " 4621 tcttcgcact tcttttccca ttcatctctt tcttcttcca aagcaacgat ccttctaccc\n", + " 4681 atttgctcag agttcaaatc ggcctctttc agtttatcca ttgcttcctt cagtttggct\n", + " 4741 tcactgtctt ctagctgttg ttctagatcc tggtttttct tggtgtagtt ctcattatta\n", + " 4801 gatctcaagt tattggagtc ttcagccaat tgctttgtat cagacaattg actctctaac\n", + " 4861 ttctccactt cactgtcgag ttgctcgttt ttagcggaca aagatttaat ctcgttttct\n", + " 4921 ttttcagtgt tagattgctc taattctttg agctgttctc tcagctcctc atatttttct\n", + " 4981 tgccatgact cagattctaa ttttaagcta ttcaatttct ctttgatc\n", + "//" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.parsers import parse\n", + "\n", + "file_path = \"./U49845.gb\"\n", + "files = parse(file_path)\n", + "\n", + "# Convert the Dseqrecord object into a formatted string in GenBank format\n", + "files[0].format(\"gb\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Now, you can work with the sequence record using pydna, using the `Dseqrecord` class. `Dseqrecord` provides ways to highlight regions of interest on the sequence, adding new features to the record, removing features, and creating new `Dseqrecord` objects to store and export your changes. Please refer to the `Dseq_Features` notebook for more information." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Importing Sequences from Strings\n", + "\n", + "`parse` also allows sequences to be read from a string alone. This could be useful to read FASTA sequences obtained from GenBank APIs. " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + ">lcl|U49845.1_cds_AAA98667.1_3 [gene=REV7] [protein=Rev7p] [protein_id=AAA98667.1] [location=complement(3300..4037)] [gbkey=CDS]\n", + "ATGAATAGATGGGTAGAGAAGTGGCTGAGGGTATACTTAAAATGCTACATTAATTTGATT\n", + "TTATTTTATAGAAATGTATACCCACCTCAGTCATTCGACTACACTACTTACCAGTCATTC\n", + "AACTTGCCGCAGTTCGTTCCCATTAATAGGCATCCTGCTTTAATTGACTATATAGAAGAA\n", + "CTTATACTGGATGTTCTTTCTAAATTAACGCACGTTTACAGATTTTCCATCTGCATTATT\n", + "AATAAAAAGAACGATTTATGCATTGAAAAATACGTTTTAGATTTTAGTGAATTACAACAT\n", + "GTGGATAAAGACGATCAGATCATTACGGAAACTGAAGTGTTCGACGAATTCCGATCTTCC\n", + "TTAAATAGTTTGATTATGCATTTGGAGAAATTACCTAAAGTCAACGATGACACAATAACA\n", + "TTTGAAGCAGTTATTAATGCGATCGAATTGGAACTAGGACATAAGTTGGACAGAAACAGG\n", + "AGGGTCGATAGTTTGGAGGAAAAAGCAGAAATTGAAAGGGATTCAAACTGGGTTAAATGT\n", + "CAAGAAGATGAAAATTTACCAGACAATAATGGTTTTCAACCTCCTAAAATAAAACTCACT\n", + "TCTTTAGTCGGTTCTGACGTGGGGCCTTTGATTATTCATCAGTTTAGTGAAAAATTAATC\n", + "AGCGGTGACGACAAAATTTTGAATGGAGTGTATTCTCAATATGAAGAGGGCGAGAGCATT\n", + "TTTGGATCTTTGTTTTAA\n" + ] + } + ], + "source": [ + "from pydna.parsers import parse\n", + "\n", + "my_record = parse(\n", + "'''\n", + ">lcl|U49845.1_cds_AAA98667.1_3 [gene=REV7] [protein=Rev7p] [protein_id=AAA98667.1] [location=complement(3300..4037)] [gbkey=CDS]\n", + "ATGAATAGATGGGTAGAGAAGTGGCTGAGGGTATACTTAAAATGCTACATTAATTTGATTTTATTTTATA\n", + "GAAATGTATACCCACCTCAGTCATTCGACTACACTACTTACCAGTCATTCAACTTGCCGCAGTTCGTTCC\n", + "CATTAATAGGCATCCTGCTTTAATTGACTATATAGAAGAACTTATACTGGATGTTCTTTCTAAATTAACG\n", + "CACGTTTACAGATTTTCCATCTGCATTATTAATAAAAAGAACGATTTATGCATTGAAAAATACGTTTTAG\n", + "ATTTTAGTGAATTACAACATGTGGATAAAGACGATCAGATCATTACGGAAACTGAAGTGTTCGACGAATT\n", + "CCGATCTTCCTTAAATAGTTTGATTATGCATTTGGAGAAATTACCTAAAGTCAACGATGACACAATAACA\n", + "TTTGAAGCAGTTATTAATGCGATCGAATTGGAACTAGGACATAAGTTGGACAGAAACAGGAGGGTCGATA\n", + "GTTTGGAGGAAAAAGCAGAAATTGAAAGGGATTCAAACTGGGTTAAATGTCAAGAAGATGAAAATTTACC\n", + "AGACAATAATGGTTTTCAACCTCCTAAAATAAAACTCACTTCTTTAGTCGGTTCTGACGTGGGGCCTTTG\n", + "ATTATTCATCAGTTTAGTGAAAAATTAATCAGCGGTGACGACAAAATTTTGAATGGAGTGTATTCTCAAT\n", + "ATGAAGAGGGCGAGAGCATTTTTGGATCTTTGTTTTAA\n", + "'''\n", + ")\n", + "print(my_record[0].format(\"fasta\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Extra info\n", + "\n", + "Note that pydna's `parse` guesses whether the argument passed is a file path or a string, and also guesses the file type based on the content, so it can give unexpected behaviour if your files are not well formatted. To have more control over the parsing of sequences, you can use biopython's `parse` from `Bio.SeqIO`, and then instantiate a `Dseqrecord` from the biopython's `SeqRecord`" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-5028)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from Bio.SeqIO import parse as seqio_parse\n", + "from pydna.dseqrecord import Dseqrecord\n", + "\n", + "file_path = './U49845.gb'\n", + "\n", + "# Extract the first Seqrecord of the SeqIO.parse iterator\n", + "seq_record = next(seqio_parse(file_path, 'genbank'))\n", + "\n", + "# This is how circularity is stored in biopython's seqrecord\n", + "is_circular = 'topology' in seq_record.annotations.keys() and seq_record.annotations['topology'] == 'circular'\n", + "\n", + "# Convert into Dseqrecord\n", + "dseq_record = Dseqrecord(seq_record, circular=is_circular)\n", + "\n", + "dseq_record" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.5" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/PCR.ipynb b/docs/notebooks/PCR.ipynb new file mode 100755 index 00000000..b8db61dc --- /dev/null +++ b/docs/notebooks/PCR.ipynb @@ -0,0 +1,398 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# How to Perform a Polymerase Chain Reaction (PCR)\n", + "\n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "This page walks you through how to perform a PCR, and design PCR primers, using `pydna`. A PCR amplifies a specific stretch of DNA defined by the primers, and it is critical to ensure primer binding specificity and appropriate primer melting temperature (tm) through careful design. `pydna` provides tools for quick modelling of PCR to check for correct PCR products, and methods for calculating tm and primer design, as performed in other popular web servcies (e.g Primer3Plus). \n", + "\n", + "## Modelling PCR with Known Primers\n", + "\n", + "To perform PCR, `pydna` provides the `anneal` class and the `pcr` method to quickly generate expected primer products, on a `Dseqrecord` object. The `pcr` method needs only the forward and reverse primers, and the sequence. The primers must be passed from the 5' to the 3' end, following biological convention. More information on `Dseqrecord` and importing DNA sequences can be found in the other guide pages. \n", + " \n", + "The following example uses a 300+ bp custom sample circular DNA, containing an example gene that we would like to clone. 18 bp forward and reverse primers have been provided. " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "LOCUS 45bp_PCR_prod 45 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION pcr_product_description_description.\n", + "ACCESSION 45bp\n", + "VERSION 45bp\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 1..45\n", + " /label=\"example_gene\"\n", + " primer_bind 1..18\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer sequence:ATTCCTGCAGAGTACATC\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " primer_bind complement(28..45)\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer sequence:ACCATCCGAAGATATCTT\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 attcctgcag agtacatcaa ttctatgaag atatcttcgg atggt\n", + "//" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.amplify import pcr\n", + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.parsers import parse\n", + "\n", + "#Importing GenBank file containing sample sequence \n", + "path = \"./sample_seq.gb\"\n", + "record = parse(path)[0]\n", + "\n", + "#Defining forward and reverse primers\n", + "fwd_primer = \"ATTCCTGCAGAGTACATC\"\n", + "rvs_primer = \"ACCATCCGAAGATATCTT\"\n", + "\n", + "#Performing PCR\n", + "pcr_product = pcr(fwd_primer, rvs_primer, record)\n", + "\n", + "#Printing results\n", + "pcr_product.format(\"gb\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The `pcr` method then returns a `Amplicon` class object (to model a PCR product), a subclass of `Dseqrecord` with some extra methods (e.g `.figure`. See \"Other ways of visualising the PCR products\" section below). All the features inside the PCR product has been retained. Note how the example gene has been retained as a feature in `pcr_product`. In addition, two new features have been added to the record to indicate the forward and reverse primer binding regions.\n", + "\n", + "`pydna` also allows modelling for PCR with extra bases on the 5' end of primers. This functionality is useful for modelling molecular cloning with multiple steps, where you might want to add different restriction sites to PCR products and ensure that the right sequences have been replicated.\n", + "\n", + "For instance, to make sure that I can add a HindIII restriction site (AAGCTT) at the end of my `example_gene` without accidental hybridisation with other parts of the circular sequence, I can perform PCR in the `pydna` package like so." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "LOCUS 57bp_PCR_prod 57 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION pcr_product_description_description.\n", + "ACCESSION 57bp\n", + "VERSION 57bp\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " primer_bind 1..21\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer sequence:AAGCTTATTCCTGCAGAGTACATC\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " gene 4..48\n", + " /label=\"example_gene\"\n", + " primer_bind complement(31..48)\n", + " /label=\"name\"\n", + " /PCR_conditions=\"primer sequence:AAGCTTACCATCCGAAGATATCTT\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 aagcttattc ctgcagagta catcaattct atgaagatat cttcggatgg taagctt\n", + "//" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "fwd_primer = \"AAGCTTATTCCTGCAGAGTACATC\"\n", + "rvs_primer = \"AAGCTTACCATCCGAAGATATCTT\"\n", + "\n", + "#Performing PCR\n", + "pcr_product_HindIII = pcr(fwd_primer, rvs_primer, record)\n", + "\n", + "#Printing results\n", + "pcr_product_HindIII.format(\"gb\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "For more information on restriction digests and ligation, please refer to the Restriction and Ligation page. \n", + "\n", + "## Other ways of visualising the PCR products \n", + "\n", + "In addition to the normal `print` function and the `.format()` method (More information can be found in Dseq and Importing_Seqs pages, respectively), pcr products can also be visualized in other ways.\n", + "\n", + "We can check the sequence of the pcr products alone using the `.seq` attribute on a PCR product:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ATTCCTGCAGAGTACATCAATTCTATGAAGATATCTTCGGATGGT\n" + ] + } + ], + "source": [ + "print(pcr_product.seq)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We can also visualize the pcr products as a figure, using the `.figure` method." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "5ATTCCTGCAGAGTACATC...AAGATATCTTCGGATGGT3\n", + " ||||||||||||||||||\n", + " 3TTCTATAGAAGCCTACCA5\n", + "5ATTCCTGCAGAGTACATC3\n", + " ||||||||||||||||||\n", + "3TAAGGACGTCTCATGTAG...TTCTATAGAAGCCTACCA5\n" + ] + } + ], + "source": [ + "print(pcr_product.figure())" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Designing Primers and Calculating Tm in pydna\n", + "\n", + "`pydna` also provides the `primer_design` method to design primer sequences based on the desired pcr product and the template sequence's melting temperature (Tm). The `primer_design` method can be imported from the `pydna.design` module, and needs the user to supply the PCR template sequence (as a `Dseqrecord` object) and the Tm. The template sequence should be given as the first parameter, and the Tm give through the `target_tm=` argument, as demonstrated below. If you have no specific Tm in mind, the method uses the default Tm of 55 degrees celcius.\n", + "\n", + "Note that in the following example below, I used zero-based indexing on the `Dseqrecord` to find the sequence of my example gene, of which I would like to clone via PCR. Please refer to the `Dseq` page for more information on how to index a sequence. \n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS example_gene 45 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION pcr_product_f45 example_gene_r45 example_gene.\n", + "ACCESSION example_gene\n", + "VERSION example_gene\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 1..45\n", + " /label=\"example_gene\"\n", + " primer_bind 1..16\n", + " /label=\"f45\"\n", + " /PCR_conditions=\"primer sequence:ATTCCTGCAGAGTACA\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " primer_bind complement(29..45)\n", + " /label=\"r45\"\n", + " /PCR_conditions=\"primer sequence:ACCATCCGAAGATATCT\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 attcctgcag agtacatcaa ttctatgaag atatcttcgg atggt\n", + "//\n" + ] + } + ], + "source": [ + "from pydna.design import primer_design\n", + "\n", + "#Designing the primers\n", + "primers = primer_design(record[6:51], target_tm=50.0)\n", + "\n", + "#Printing the output\n", + "print(primers.format(\"gb\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The formula for primer design in `pydna` is based on the Tm formula from Rychlik et al (1990), found [here](http://www.ncbi.nlm.nih.gov/pubmed/2243783). Additional information on calculating Tm can be found in the \"Calculating Tm\" section below.\n", + "\n", + "The forward and reverse primer sequences are printed in the features list of the `Amplicon` object. Note how the feature representing the example gene is retained, as appropriate. \n", + "\n", + "If you already have a forward / reverse primer, `primer_design` also allows this information to be taken as arguments. `fp` specifies the forward primer, `rp` specifies the reverse primers. `fp` and `rp` can be should be given as `Primer` class objects, which should be imported from `pydna` too. \n", + "\n", + "For instance, if I already have a forward primer containing an EcoRI restriction site, and I aim to to generate a reverse primer of a similar Tm, I can apply the following code: " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS example_gene 51 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION pcr_product_forward_primer example_gene_r45 example_gene.\n", + "ACCESSION example_gene\n", + "VERSION example_gene\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " gene 1..45\n", + " /label=\"example_gene\"\n", + " primer_bind 1..19\n", + " /label=\"f45\"\n", + " /PCR_conditions=\"primer sequence:GAATTCATTCCTGCAGAGTACATCA\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + " primer_bind complement(26..45)\n", + " /label=\"r45\"\n", + " /PCR_conditions=\"primer sequence:ACCATCCGAAGATATCTTCA\"\n", + " /ApEinfo_fwdcolor=\"#baffa3\"\n", + " /ApEinfo_revcolor=\"#ffbaba\"\n", + "ORIGIN\n", + " 1 gaattcattc ctgcagagta catcaattct atgaagatat cttcggatgg t\n", + "//\n" + ] + } + ], + "source": [ + "from pydna.primer import Primer\n", + "\n", + "forward_primer = Primer(\"GAATTCATTCCTGCAGAGTACATCA\", id=\"forward_primer\")\n", + "\n", + "primers_sixfive = primer_design(record[6:51], fp = forward_primer)\n", + "\n", + "print(primers_sixfive.format(\"gb\"))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Calculating Tm\n", + "\n", + "`pydna` comes with some functions to calculate Tms. The default function `tm_default` used is the previously mentioned one by Rychlik et al (1990), which takes a string as input. Another function derive from the Tm calculation adapted for primers using polymerases with a DNA binding domain (e.g Phusion polymerase). The default values for Tm calculation, including primer concentration, buffer strengths, and more, can also be modified through arguments in the `tm_default` method. Please refer to the `pydna.tm` module docstring for more information. An example is provided with a pair of primers; the temperature is given in degrees celcius." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "55.901005046706075\n", + "55.841913263215304\n" + ] + } + ], + "source": [ + "from pydna.tm import tm_default\n", + "\n", + "# Example Tm calculation for a pair of primers\n", + "primer_f = \"ATTCCTGCAGAGTACATCA\"\n", + "primer_r = \"ACCATCCGAAGATATCTTCA\"\n", + "tm_f = tm_default(primer_f)\n", + "tm_r = tm_default(primer_r)\n", + "\n", + "print(tm_f)\n", + "print(tm_r)" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.4" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/Restrict_Ligate_Cloning.ipynb b/docs/notebooks/Restrict_Ligate_Cloning.ipynb new file mode 100644 index 00000000..45afbefe --- /dev/null +++ b/docs/notebooks/Restrict_Ligate_Cloning.ipynb @@ -0,0 +1,322 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Restriction and Ligation \n", + "> Visit the full library documentation [here](https://bjornfjohansson.github.io/pydna/)\n", + "\n", + "In this page, we explore how to use pydna to cut, ligate, circularise DNA sequences. pydna works in conjugation with the `Bio.Restriction` module to apply a vast variety of restriction enzymes for cutting, whose module documentations can be found [here](https://biopython.org/DIST/docs/cookbook/Restriction.html).\n", + "\n", + "## Cutting with one or more restriction enzymes\n", + "\n", + "Restriction enzymes recognise specific DNA sequences and cut them, leaving sticky ends or blunt ends. To cut a sequence using `pydna`, we can use the `cut` method on a `Dseqrecord` object. Here is an example showing how to use the `cut` method to genenrate EcoRI restriction digests. The record includes a 338bp circular sequence, with an example gene feature." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: False\n", + "size: 338\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 1\n", + "/molecule_type=DNA\n", + "Dseq(-338)\n", + "AATTCTTC..TGTG \n", + " GAAG..ACACTTAA\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from pydna.parsers import parse\n", + "from Bio.Restriction import EcoRI\n", + "\n", + "# Create a Dseqrecord with your FASTA/GenBank file\n", + "path = \"./sample_seq.gb\"\n", + "record = parse(path)[0]\n", + "\n", + "# Cut with a single enzyme\n", + "cut_records = record.cut(EcoRI)\n", + "\n", + "# Display the resulting fragments\n", + "for frag in cut_records:\n", + " print(frag)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The circular `Dseqrecord` is cut into a linear `Dseqrecord` object, since there is only one EcoRI recognition site. `Dseqrecord` also shows the 5' sticky end after cutting.\n", + "\n", + "The sequence can also be cut with multiple restriction enzymes, into multiple linear DNA sequences. We can simply import all the restriction enzymes, and use the cut method as normal." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "Dseqrecord\n", + "circular: False\n", + "size: 51\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(-51)\n", + "ATCT..TGTG \n", + "TAGA..ACACTTAA\n", + "\n", + "\n", + "Dseqrecord\n", + "circular: False\n", + "size: 214\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(-214)\n", + "AATTCTTC..TGAT\n", + " GAAG..ACTA\n", + "\n", + "\n", + "Dseqrecord\n", + "circular: False\n", + "size: 73\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(-73)\n", + "ATCT..AGAT\n", + "TAGA..TCTA\n", + "\n" + ] + } + ], + "source": [ + "from Bio.Restriction import EcoRV\n", + "\n", + "# Cut with a multiple enzymes\n", + "multi_cut_records = record.cut(EcoRI, EcoRV)\n", + "\n", + "# Display the resulting fragments\n", + "for frag in multi_cut_records:\n", + " print()\n", + " print(frag)\n", + " print()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "There are two EcoRV recognition sites in `sample_seq`, and coupled with the one EcoRI recognition site, three DNA fragments are returned. Note how `Dseqrecord` returns the blunt end after EcoRV cuts. \n", + "\n", + "You can model any, and and number of, enzymes with the `cut` method and `Bio.Restriction` module. This makes `pydna` a quick and powerful method to plan your molecular cloning experiments, for instance to check the restriction digests of a 10kb plasmid with multiple enzymes. `cut` is also a method of the `Dseq` class, so `Dseq`s can be used as well. \n", + "\n", + "## Ligating fragments\n", + "\n", + "After cutting a DNA sequence, you can ligate the fragments back together in `pydna` using the `+` operator on `Dseqrecord` or `Dseq` objects. Ligation can occur via complementary sticky ends or blunt ends. For instance, we can select the first and second fragments from `multi_cut_records` via indexing, and then ligate sticky ends produced by EcoRI to make a single linear sequence." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: False\n", + "size: 261\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(-261)\n", + "ATCT..TGAT\n", + "TAGA..ACTA\n" + ] + } + ], + "source": [ + "ligated_product = multi_cut_records[0] + multi_cut_records[1]\n", + "print(ligated_product)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "We can also join blunt ends in a similar way. Note that the sticky-ends must be a perfect match to join. If `+` ligation (or any other method, really) doesn't work, make sure that:\n", + "\n", + "1. you are indeed performing the operation on `Dseqrecord` objects, as opposed to other data types (e.g lists, strings, etc)\n", + "2. `Dseqrecord` and the correct enzyme name (with correct roman numeral spelling) has been imported. " + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Circularizing fragments\n", + "\n", + "To circularize a cut DNA sequence use the `looped` method, which returns a new sequence object.\n", + "\n", + "๐Ÿšจ๐Ÿšจ **VERY IMPORTANT** ๐Ÿšจ๐Ÿšจ `.looped()` method does not act in place, so a new variable should be created to store the new circularised sequence, as shown in the following example." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "is ligated_product circular? False\n", + "is circular_record circular? True\n", + "\n", + "Dseqrecord\n", + "circular: True\n", + "size: 261\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(o261)\n", + "ATCT..TGAT\n", + "TAGA..ACTA\n" + ] + } + ], + "source": [ + "circular_record = ligated_product.looped()\n", + "\n", + "print('is ligated_product circular?', ligated_product.circular)\n", + "print('is circular_record circular?', circular_record.circular)\n", + "print()\n", + "\n", + "print(circular_record)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Extra Notes: What happens to features when cutting/ligating?\n", + "\n", + "A feature is removed from a `Dseqrecord` if the features is truncated by the cut. For instance, the example_gene feature is removed from the record after cutting `record` with PstI, which has recognition site within example_gene. within the cutand if the feature is completely within the cut, it is retained. " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord\n", + "circular: False\n", + "size: 222\n", + "ID: id\n", + "Name: name\n", + "Description: description\n", + "Number of features: 0\n", + "/molecule_type=DNA\n", + "Dseq(-222)\n", + " GAGT..TAACTGCA\n", + "ACGTCTCA..ATTG \n" + ] + } + ], + "source": [ + "from Bio.Restriction import PstI\n", + "\n", + "cut_record2 = record.cut(PstI)\n", + "\n", + "print(cut_record2[0])\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "However, if a cut does not overlap with the feature, the feature is retained on the `Dseqrecord`. For instance, if we go back to the first example given by the EcoRI cut, example_gene has been retained after cutting. For more information on Features, please refer to the `Dseq_Feature` documentations." + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.5" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/U49845.fasta b/docs/notebooks/U49845.fasta new file mode 100644 index 00000000..ee456f06 --- /dev/null +++ b/docs/notebooks/U49845.fasta @@ -0,0 +1,54 @@ +>lcl|U49845.1_cds_AAA98665.1_1 [protein=TCP1-beta] [frame=3] [protein_id=AAA98665.1] [location=<1..206] [gbkey=CDS] +TCCTCCATATACAACGGTATCTCCACCTCAGGTTTAGATCTCAACAACGGAACCATTGCCGACATGAGAC +AGTTAGGTATCGTCGAGAGTTACAAGCTAAAACGAGCAGTAGTCAGCTCTGCATCTGAAGCCGCTGAAGT +TCTACTAAGGGTGGATAACATCATCCGTGCAAGACCAAGAACCGCCAATAGACAACATATGTAA +>lcl|U49845.1_cds_AAA98666.1_2 [gene=AXL2] [protein=Axl2p] [protein_id=AAA98666.1] [location=687..3158] [gbkey=CDS] +ATGACACAGCTTCAGATTTCATTATTGCTGACAGCTACTATATCACTACTCCATCTAGTAGTGGCCACGC +CCTATGAGGCATATCCTATCGGAAAACAATACCCCCCAGTGGCAAGAGTCAATGAATCGTTTACATTTCA +AATTTCCAATGATACCTATAAATCGTCTGTAGACAAGACAGCTCAAATAACATACAATTGCTTCGACTTA +CCGAGCTGGCTTTCGTTTGACTCTAGTTCTAGAACGTTCTCAGGTGAACCTTCTTCTGACTTACTATCTG +ATGCGAACACCACGTTGTATTTCAATGTAATACTCGAGGGTACGGACTCTGCCGACAGCACGTCTTTGAA +CAATACATACCAATTTGTTGTTACAAACCGTCCATCCATCTCGCTATCGTCAGATTTCAATCTATTGGCG +TTGTTAAAAAACTATGGTTATACTAACGGCAAAAACGCTCTGAAACTAGATCCTAATGAAGTCTTCAACG +TGACTTTTGACCGTTCAATGTTCACTAACGAAGAATCCATTGTGTCGTATTACGGACGTTCTCAGTTGTA +TAATGCGCCGTTACCCAATTGGCTGTTCTTCGATTCTGGCGAGTTGAAGTTTACTGGGACGGCACCGGTG +ATAAACTCGGCGATTGCTCCAGAAACAAGCTACAGTTTTGTCATCATCGCTACAGACATTGAAGGATTTT +CTGCCGTTGAGGTAGAATTCGAATTAGTCATCGGGGCTCACCAGTTAACTACCTCTATTCAAAATAGTTT +GATAATCAACGTTACTGACACAGGTAACGTTTCATATGACTTACCTCTAAACTATGTTTATCTCGATGAC +GATCCTATTTCTTCTGATAAATTGGGTTCTATAAACTTATTGGATGCTCCAGACTGGGTGGCATTAGATA +ATGCTACCATTTCCGGGTCTGTCCCAGATGAATTACTCGGTAAGAACTCCAATCCTGCCAATTTTTCTGT +GTCCATTTATGATACTTATGGTGATGTGATTTATTTCAACTTCGAAGTTGTCTCCACAACGGATTTGTTT +GCCATTAGTTCTCTTCCCAATATTAACGCTACAAGGGGTGAATGGTTCTCCTACTATTTTTTGCCTTCTC +AGTTTACAGACTACGTGAATACAAACGTTTCATTAGAGTTTACTAATTCAAGCCAAGACCATGACTGGGT +GAAATTCCAATCATCTAATTTAACATTAGCTGGAGAAGTGCCCAAGAATTTCGACAAGCTTTCATTAGGT +TTGAAAGCGAACCAAGGTTCACAATCTCAAGAGCTATATTTTAACATCATTGGCATGGATTCAAAGATAA +CTCACTCAAACCACAGTGCGAATGCAACGTCCACAAGAAGTTCTCACCACTCCACCTCAACAAGTTCTTA +CACATCTTCTACTTACACTGCAAAAATTTCTTCTACCTCCGCTGCTGCTACTTCTTCTGCTCCAGCAGCG +CTGCCAGCAGCCAATAAAACTTCATCTCACAATAAAAAAGCAGTAGCAATTGCGTGCGGTGTTGCTATCC +CATTAGGCGTTATCCTAGTAGCTCTCATTTGCTTCCTAATATTCTGGAGACGCAGAAGGGAAAATCCAGA +CGATGAAAACTTACCGCATGCTATTAGTGGACCTGATTTGAATAATCCTGCAAATAAACCAAATCAAGAA +AACGCTACACCTTTGAACAACCCCTTTGATGATGATGCTTCCTCGTACGATGATACTTCAATAGCAAGAA +GATTGGCTGCTTTGAACACTTTGAAATTGGATAACCACTCTGCCACTGAATCTGATATTTCCAGCGTGGA +TGAAAAGAGAGATTCTCTATCAGGTATGAATACATACAATGATCAGTTCCAATCCCAAAGTAAAGAAGAA +TTATTAGCAAAACCCCCAGTACAGCCTCCAGAGAGCCCGTTCTTTGACCCACAGAATAGGTCTTCTTCTG +TGTATATGGATAGTGAACCAGCAGTAAATAAATCCTGGCGATATACTGGCAACCTGTCACCAGTCTCTGA +TATTGTCAGAGACAGTTACGGATCACAAAAAACTGTTGATACAGAAAAACTTTTCGATTTAGAAGCACCA +GAGAAGGAAAAACGTACGTCAAGGGATGTCACTATGTCTTCACTGGACCCTTGGAACAGCAATATTAGCC +CTTCTCCCGTAAGAAAATCAGTAACACCATCACCATATAACGTAACGAAGCATCGTAACCGCCACTTACA +AAATATTCAAGACTCTCAAAGCGGTAAAAACGGAATCACTCCCACAACAATGTCAACTTCATCTTCTGAC +GATTTTGTTCCGGTTAAAGATGGTGAAAATTTTTGCTGGGTCCATAGCATGGAACCAGACAGAAGACCAA +GTAAGAAAAGGTTAGTAGATTTTTCAAATAAGAGTAATGTCAATGTTGGTCAAGTTAAGGACATTCACGG +ACGCATCCCAGAAATGCTGTGA +>lcl|U49845.1_cds_AAA98667.1_3 [gene=REV7] [protein=Rev7p] [protein_id=AAA98667.1] [location=complement(3300..4037)] [gbkey=CDS] +ATGAATAGATGGGTAGAGAAGTGGCTGAGGGTATACTTAAAATGCTACATTAATTTGATTTTATTTTATA +GAAATGTATACCCACCTCAGTCATTCGACTACACTACTTACCAGTCATTCAACTTGCCGCAGTTCGTTCC +CATTAATAGGCATCCTGCTTTAATTGACTATATAGAAGAACTTATACTGGATGTTCTTTCTAAATTAACG +CACGTTTACAGATTTTCCATCTGCATTATTAATAAAAAGAACGATTTATGCATTGAAAAATACGTTTTAG +ATTTTAGTGAATTACAACATGTGGATAAAGACGATCAGATCATTACGGAAACTGAAGTGTTCGACGAATT +CCGATCTTCCTTAAATAGTTTGATTATGCATTTGGAGAAATTACCTAAAGTCAACGATGACACAATAACA +TTTGAAGCAGTTATTAATGCGATCGAATTGGAACTAGGACATAAGTTGGACAGAAACAGGAGGGTCGATA +GTTTGGAGGAAAAAGCAGAAATTGAAAGGGATTCAAACTGGGTTAAATGTCAAGAAGATGAAAATTTACC +AGACAATAATGGTTTTCAACCTCCTAAAATAAAACTCACTTCTTTAGTCGGTTCTGACGTGGGGCCTTTG +ATTATTCATCAGTTTAGTGAAAAATTAATCAGCGGTGACGACAAAATTTTGAATGGAGTGTATTCTCAAT +ATGAAGAGGGCGAGAGCATTTTTGGATCTTTGTTTTAA + diff --git a/docs/notebooks/U49845.gb b/docs/notebooks/U49845.gb new file mode 100644 index 00000000..4860fc48 --- /dev/null +++ b/docs/notebooks/U49845.gb @@ -0,0 +1,163 @@ +LOCUS SCU49845 5028 bp DNA linear PLN 29-OCT-2018 +DEFINITION Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p + (AXL2) and Rev7p (REV7) genes, complete cds. +ACCESSION U49845 +VERSION U49845.1 +KEYWORDS . +SOURCE Saccharomyces cerevisiae (brewer's yeast) + ORGANISM Saccharomyces cerevisiae + Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; + Saccharomycetes; Saccharomycetales; Saccharomycetaceae; + Saccharomyces. +REFERENCE 1 (bases 1 to 5028) + AUTHORS Roemer,T., Madden,K., Chang,J. and Snyder,M. + TITLE Selection of axial growth sites in yeast requires Axl2p, a novel + plasma membrane glycoprotein + JOURNAL Genes Dev. 10 (7), 777-793 (1996) + PUBMED 8846915 +REFERENCE 2 (bases 1 to 5028) + AUTHORS Roemer,T. + TITLE Direct Submission + JOURNAL Submitted (22-FEB-1996) Biology, Yale University, New Haven, CT + 06520, USA +FEATURES Location/Qualifiers + source 1..5028 + /organism="Saccharomyces cerevisiae" + /mol_type="genomic DNA" + /db_xref="taxon:4932" + /chromosome="IX" + mRNA <1..>206 + /product="TCP1-beta" + CDS <1..206 + /codon_start=3 + /product="TCP1-beta" + /protein_id="AAA98665.1" + /translation="SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEA + AEVLLRVDNIIRARPRTANRQHM" + gene <687..>3158 + /gene="AXL2" + mRNA <687..>3158 + /gene="AXL2" + /product="Axl2p" + CDS 687..3158 + /gene="AXL2" + /note="plasma membrane glycoprotein" + /codon_start=1 + /product="Axl2p" + /protein_id="AAA98666.1" + /translation="MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESF + TFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFN + VILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNE + VFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPE + TSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYV + YLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYG + DVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQ + DHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSA + NATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIA + CGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLN + NPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQ + SQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDS + YGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTK + HRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRL + VDFSNKSNVNVGQVKDIHGRIPEML" + gene complement(<3300..>4037) + /gene="REV7" + mRNA complement(<3300..>4037) + /gene="REV7" + /product="Rev7p" + CDS complement(3300..4037) + /gene="REV7" + /codon_start=1 + /product="Rev7p" + /protein_id="AAA98667.1" + /translation="MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQ + FVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVD + KDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNR + RVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEK + LISGDDKILNGVYSQYEEGESIFGSLF" +ORIGIN + 1 gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg + 61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct + 121 ctgcatctga agccgctgaa gttctactaa gggtggataa catcatccgt gcaagaccaa + 181 gaaccgccaa tagacaacat atgtaacata tttaggatat acctcgaaaa taataaaccg + 241 ccacactgtc attattataa ttagaaacag aacgcaaaaa ttatccacta tataattcaa + 301 agacgcgaaa aaaaaagaac aacgcgtcat agaacttttg gcaattcgcg tcacaaataa + 361 attttggcaa cttatgtttc ctcttcgagc agtactcgag ccctgtctca agaatgtaat + 421 aatacccatc gtaggtatgg ttaaagatag catctccaca acctcaaagc tccttgccga + 481 gagtcgccct cctttgtcga gtaattttca cttttcatat gagaacttat tttcttattc + 541 tttactctca catcctgtag tgattgacac tgcaacagcc accatcacta gaagaacaga + 601 acaattactt aatagaaaaa ttatatcttc ctcgaaacga tttcctgctt ccaacatcta + 661 cgtatatcaa gaagcattca cttaccatga cacagcttca gatttcatta ttgctgacag + 721 ctactatatc actactccat ctagtagtgg ccacgcccta tgaggcatat cctatcggaa + 781 aacaataccc cccagtggca agagtcaatg aatcgtttac atttcaaatt tccaatgata + 841 cctataaatc gtctgtagac aagacagctc aaataacata caattgcttc gacttaccga + 901 gctggctttc gtttgactct agttctagaa cgttctcagg tgaaccttct tctgacttac + 961 tatctgatgc gaacaccacg ttgtatttca atgtaatact cgagggtacg gactctgccg + 1021 acagcacgtc tttgaacaat acataccaat ttgttgttac aaaccgtcca tccatctcgc + 1081 tatcgtcaga tttcaatcta ttggcgttgt taaaaaacta tggttatact aacggcaaaa + 1141 acgctctgaa actagatcct aatgaagtct tcaacgtgac ttttgaccgt tcaatgttca + 1201 ctaacgaaga atccattgtg tcgtattacg gacgttctca gttgtataat gcgccgttac + 1261 ccaattggct gttcttcgat tctggcgagt tgaagtttac tgggacggca ccggtgataa + 1321 actcggcgat tgctccagaa acaagctaca gttttgtcat catcgctaca gacattgaag + 1381 gattttctgc cgttgaggta gaattcgaat tagtcatcgg ggctcaccag ttaactacct + 1441 ctattcaaaa tagtttgata atcaacgtta ctgacacagg taacgtttca tatgacttac + 1501 ctctaaacta tgtttatctc gatgacgatc ctatttcttc tgataaattg ggttctataa + 1561 acttattgga tgctccagac tgggtggcat tagataatgc taccatttcc gggtctgtcc + 1621 cagatgaatt actcggtaag aactccaatc ctgccaattt ttctgtgtcc atttatgata + 1681 cttatggtga tgtgatttat ttcaacttcg aagttgtctc cacaacggat ttgtttgcca + 1741 ttagttctct tcccaatatt aacgctacaa ggggtgaatg gttctcctac tattttttgc + 1801 cttctcagtt tacagactac gtgaatacaa acgtttcatt agagtttact aattcaagcc + 1861 aagaccatga ctgggtgaaa ttccaatcat ctaatttaac attagctgga gaagtgccca + 1921 agaatttcga caagctttca ttaggtttga aagcgaacca aggttcacaa tctcaagagc + 1981 tatattttaa catcattggc atggattcaa agataactca ctcaaaccac agtgcgaatg + 2041 caacgtccac aagaagttct caccactcca cctcaacaag ttcttacaca tcttctactt + 2101 acactgcaaa aatttcttct acctccgctg ctgctacttc ttctgctcca gcagcgctgc + 2161 cagcagccaa taaaacttca tctcacaata aaaaagcagt agcaattgcg tgcggtgttg + 2221 ctatcccatt aggcgttatc ctagtagctc tcatttgctt cctaatattc tggagacgca + 2281 gaagggaaaa tccagacgat gaaaacttac cgcatgctat tagtggacct gatttgaata + 2341 atcctgcaaa taaaccaaat caagaaaacg ctacaccttt gaacaacccc tttgatgatg + 2401 atgcttcctc gtacgatgat acttcaatag caagaagatt ggctgctttg aacactttga + 2461 aattggataa ccactctgcc actgaatctg atatttccag cgtggatgaa aagagagatt + 2521 ctctatcagg tatgaataca tacaatgatc agttccaatc ccaaagtaaa gaagaattat + 2581 tagcaaaacc cccagtacag cctccagaga gcccgttctt tgacccacag aataggtctt + 2641 cttctgtgta tatggatagt gaaccagcag taaataaatc ctggcgatat actggcaacc + 2701 tgtcaccagt ctctgatatt gtcagagaca gttacggatc acaaaaaact gttgatacag + 2761 aaaaactttt cgatttagaa gcaccagaga aggaaaaacg tacgtcaagg gatgtcacta + 2821 tgtcttcact ggacccttgg aacagcaata ttagcccttc tcccgtaaga aaatcagtaa + 2881 caccatcacc atataacgta acgaagcatc gtaaccgcca cttacaaaat attcaagact + 2941 ctcaaagcgg taaaaacgga atcactccca caacaatgtc aacttcatct tctgacgatt + 3001 ttgttccggt taaagatggt gaaaattttt gctgggtcca tagcatggaa ccagacagaa + 3061 gaccaagtaa gaaaaggtta gtagattttt caaataagag taatgtcaat gttggtcaag + 3121 ttaaggacat tcacggacgc atcccagaaa tgctgtgatt atacgcaacg atattttgct + 3181 taattttatt ttcctgtttt attttttatt agtggtttac agatacccta tattttattt + 3241 agtttttata cttagagaca tttaatttta attccattct tcaaatttca tttttgcact + 3301 taaaacaaag atccaaaaat gctctcgccc tcttcatatt gagaatacac tccattcaaa + 3361 attttgtcgt caccgctgat taatttttca ctaaactgat gaataatcaa aggccccacg + 3421 tcagaaccga ctaaagaagt gagttttatt ttaggaggtt gaaaaccatt attgtctggt + 3481 aaattttcat cttcttgaca tttaacccag tttgaatccc tttcaatttc tgctttttcc + 3541 tccaaactat cgaccctcct gtttctgtcc aacttatgtc ctagttccaa ttcgatcgca + 3601 ttaataactg cttcaaatgt tattgtgtca tcgttgactt taggtaattt ctccaaatgc + 3661 ataatcaaac tatttaagga agatcggaat tcgtcgaaca cttcagtttc cgtaatgatc + 3721 tgatcgtctt tatccacatg ttgtaattca ctaaaatcta aaacgtattt ttcaatgcat + 3781 aaatcgttct ttttattaat aatgcagatg gaaaatctgt aaacgtgcgt taatttagaa + 3841 agaacatcca gtataagttc ttctatatag tcaattaaag caggatgcct attaatggga + 3901 acgaactgcg gcaagttgaa tgactggtaa gtagtgtagt cgaatgactg aggtgggtat + 3961 acatttctat aaaataaaat caaattaatg tagcatttta agtataccct cagccacttc + 4021 tctacccatc tattcataaa gctgacgcaa cgattactat tttttttttc ttcttggatc + 4081 tcagtcgtcg caaaaacgta taccttcttt ttccgacctt ttttttagct ttctggaaaa + 4141 gtttatatta gttaaacagg gtctagtctt agtgtgaaag ctagtggttt cgattgactg + 4201 atattaagaa agtggaaatt aaattagtag tgtagacgta tatgcatatg tatttctcgc + 4261 ctgtttatgt ttctacgtac ttttgattta tagcaagggg aaaagaaata catactattt + 4321 tttggtaaag gtgaaagcat aatgtaaaag ctagaataaa atggacgaaa taaagagagg + 4381 cttagttcat cttttttcca aaaagcaccc aatgataata actaaaatga aaaggatttg + 4441 ccatctgtca gcaacatcag ttgtgtgagc aataataaaa tcatcacctc cgttgccttt + 4501 agcgcgtttg tcgtttgtat cttccgtaat tttagtctta tcaatgggaa tcataaattt + 4561 tccaatgaat tagcaatttc gtccaattct ttttgagctt cttcatattt gctttggaat + 4621 tcttcgcact tcttttccca ttcatctctt tcttcttcca aagcaacgat ccttctaccc + 4681 atttgctcag agttcaaatc ggcctctttc agtttatcca ttgcttcctt cagtttggct + 4741 tcactgtctt ctagctgttg ttctagatcc tggtttttct tggtgtagtt ctcattatta + 4801 gatctcaagt tattggagtc ttcagccaat tgctttgtat cagacaattg actctctaac + 4861 ttctccactt cactgtcgag ttgctcgttt ttagcggaca aagatttaat ctcgttttct + 4921 ttttcagtgt tagattgctc taattctttg agctgttctc tcagctcctc atatttttct + 4981 tgccatgact cagattctaa ttttaagcta ttcaatttct ctttgatc +// diff --git a/docs/notebooks/gibson_eg.gb b/docs/notebooks/gibson_eg.gb new file mode 100644 index 00000000..b63d9a01 --- /dev/null +++ b/docs/notebooks/gibson_eg.gb @@ -0,0 +1,68286 @@ +LOCUS CP001348 4068724 bp DNA circular BCT 25-AUG-2017 +DEFINITION Ruminiclostridium cellulolyticum H10 chromosome, complete genome. +ACCESSION CP001348 AAVC01000000 AAVC01000001-AAVC01000121 +VERSION CP001348.1 +DBLINK BioProject: PRJNA17419 + BioSample: SAMN00623037 +KEYWORDS . +SOURCE Ruminiclostridium cellulolyticum H10 + ORGANISM Ruminiclostridium cellulolyticum H10 + Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; + Ruminiclostridium. +REFERENCE 1 (bases 1 to 4068724) + AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., + Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., + Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., + Hauser,L., Kyrpides,N., Ivanova,N., Zhou,J. and Richardson,P. + CONSRTM US DOE Joint Genome Institute + TITLE Complete sequence of Clostridium cellulolyticum H10 + JOURNAL Unpublished +REFERENCE 2 (bases 1 to 4068724) + AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., + Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., + Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., + Hauser,L., Kyrpides,N., Ivanova,N., Zhou,J. and Richardson,P. + CONSRTM US DOE Joint Genome Institute + TITLE Direct Submission + JOURNAL Submitted (06-JAN-2009) US DOE Joint Genome Institute, 2800 + Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA +COMMENT URL -- http://www.jgi.doe.gov + JGI Project ID: 4002584 + Source DNA and bacteria available from Jizhong Zhou + (jzhou@rccc.ou.edu) + Contacts: Jizhong Zhou (jzhou@rccc.ou.edu) + David Bruce (microbe@cuba.jgi-psf.org) + Annotation done by JGI-ORNL and JGI-PGF + Finishing done by JGI-LANL + Finished microbial genomes have been curated to close all gaps with + greater than 98% coverage of at least two independent clones. Each + base pair has a minimum q (quality) value of 30 and the total error + rate is less than one per 50000. + The JGI and collaborators endorse the principles for the + distribution and use of large scale sequencing data adopted by the + larger genome sequencing community and urge users of this data to + follow them. it is our intention to publish the work of this + project in a timely fashion and we welcome collaborative + interaction on the project and analysis. + (http://www.genome.gov/page.cfm?pageID=10506376). +FEATURES Location/Qualifiers + source 1..4068724 + /organism="Ruminiclostridium cellulolyticum H10" + /mol_type="genomic DNA" + /strain="H10; ATCC 35319" + /culture_collection="ATCC:35319" + /type_material="type strain of Clostridium cellulolyticum" + /db_xref="taxon:394503" + gene 27..1349 + /locus_tag="Ccel_0001" + CDS 27..1349 + /locus_tag="Ccel_0001" + /inference="protein motif:TFAM:TIGR00362" + /note="KEGG: cth:Cthe_2371 chromosomal replication + initiation protein; + TIGRFAM: chromosomal replication initiator protein DnaA; + PFAM: Chromosomal replication initiator DnaA domain; + Chromosomal replication initiator DnaA; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="chromosomal replication initiator protein DnaA" + /protein_id="ACL74389.1" + /db_xref="InterPro:IPR001957" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR013159" + /db_xref="InterPro:IPR013317" + /translation="MNVQLNEIWNRTLELLKGEMTEISFNTWILTIEPISIDSNTITL + GVPADFNKGILEARYSYLIKNALRQISHRDYNIYFAIPSQTPVKPVAQEYTEDSNMSF + LNPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHFV + LSQNPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQFIGGKERTE + EEFFHTFNALYEANKQIIISSDKPPKEIPTLEDRLRSRFEWGLIADIAPPDLETRIAI + LRKKAQLENLDVPDDVMVFIADKVASNIRELEGALNRVIAYSTLTENIINVDMAVEAL + KDMLNNSKAIIINSKTIQEAVARYFHLKTDDLKSKRRSRDVSFPRQIAMYLCRDMTDM + SLPKIGDEFGGRDHTTVIHACEKINNDLNNSTELKRTVEEIKKNITGG" + gene 1598..2698 + /locus_tag="Ccel_0002" + CDS 1598..2698 + /locus_tag="Ccel_0002" + /inference="protein motif:TFAM:TIGR00663" + /note="TIGRFAM: DNA polymerase III, beta subunit; + PFAM: DNA polymerase III beta chain; + KEGG: cth:Cthe_2372 DNA polymerase III subunit beta" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, beta subunit" + /protein_id="ACL74390.1" + /db_xref="InterPro:IPR001001" + /translation="MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNADDKFKLT + GNDLEIGIECYVEADIRSTGCIVINSKIFGDIVRRLPDSEVLIEVTGNNLVIVECENS + HFEIKGINPSGYPSLPVVEKENILELTQSDLKDMIRQTVFAVGSDENRPVLTGSLIEV + KDKELVIVSIDGFRLALRRKNLENDINDFSVIVPGKTLNEISKILQPTDEEVSVYSSN + NQVVFDAKSWRIVSRLIEGKFLNYNSLLNKDFETKVIINIKEFQSSLERASLISMNDK + NSPVKLFIGNDKIIITSNADLGNVREEVKAEIEGNALEIGYNPAFLIDALKAIDEERA + SIYFITTNAPCTMRPLIESNNAFAYLVQAVRI" + gene 2726..2941 + /locus_tag="Ccel_0003" + CDS 2726..2941 + /locus_tag="Ccel_0003" + /inference="protein motif:PFAM:PF01479" + /note="PFAM: RNA-binding S4 domain protein; + KEGG: cpr:CPR_0003 S4 domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="RNA-binding S4 domain protein" + /protein_id="ACL74391.1" + /db_xref="InterPro:IPR002942" + /translation="MEEVGINTEFIKLDQFLKWVGACDNGALAKGFIVDGFVKVNGNV + ELQRGKKLRNGDTVEFNQKQYKVIQNC" + gene 2955..4073 + /locus_tag="Ccel_0004" + CDS 2955..4073 + /locus_tag="Ccel_0004" + /inference="protein motif:TFAM:TIGR00611" + /note="TIGRFAM: DNA replication and repair protein RecF; + PFAM: SMC domain protein; + KEGG: cth:Cthe_2374 DNA replication and repair protein + RecF" + /codon_start=1 + /transl_table=11 + /product="DNA replication and repair protein RecF" + /protein_id="ACL74392.1" + /db_xref="InterPro:IPR001238" + /db_xref="InterPro:IPR003395" + /translation="MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIY + LCASGRSHRTSRDSELIKFGCENFSIAVHVSKTGGLDKDIEISYYENQKKQIKINDIP + IKKIGALMGNLYAVLFSPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILK + QRNTLLKNISSNPKLMDTVDIWNMRLAEVAAAIIKARRTFSIMLSGMAENQHNFLTGK + SEKISFDYRCSFQISGQDDTEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMIN + DKSLKLYGSQGQQRSAVLSLKIAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDS + IKEVQTFITCTNKEHFGNLLSANSNFFKIVGGNIHSCM" + gene 4141..4410 + /locus_tag="Ccel_0005" + CDS 4141..4410 + /locus_tag="Ccel_0005" + /inference="similar to AA sequence:KEGG:Cthe_2375" + /note="KEGG: cth:Cthe_2375 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74393.1" + /translation="MFLHIGGDVVIPIKNVIAIMDIDTTTISKDTREFLKVAEEEGFV + KSISEDLPKSFIITETDKKSKIYLSPISSVTLQKRSKYITDISNI" + gene 4442..6370 + /locus_tag="Ccel_0006" + CDS 4442..6370 + /locus_tag="Ccel_0006" + /inference="protein motif:TFAM:TIGR01059" + /note="KEGG: cth:Cthe_2376 DNA gyrase subunit B; + TIGRFAM: DNA gyrase, B subunit; + PFAM: DNA gyrase subunit B domain protein; ATP-binding + region ATPase domain protein; TOPRIM domain protein; DNA + topoisomerase type IIA subunit B region 2 domain protein; + SMART: DNA topoisomerase II" + /codon_start=1 + /transl_table=11 + /product="DNA gyrase, B subunit" + /protein_id="ACL74394.1" + /db_xref="InterPro:IPR000565" + /db_xref="InterPro:IPR001241" + /db_xref="InterPro:IPR002288" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR011557" + /db_xref="InterPro:IPR013506" + /translation="MSDINNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLV + YEIVANSIDEALAGRCDIIKVIVHKDNSVTVTDNGSGIPVGIHPKMGIPTLEVVHTIL + HAGGKFGSGAYSVSGGLHGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPLTSVDI + VGDTDETGTITTFKPDPEIFEEIVYDFDAMISRYREMAFLNKGINIKLIDERPEESVE + KNLHYEGGIISFVEYLNKSKEPLHDEVIYLEGSRDANIVEVAMQYNDSYNESVFTYAN + NIATTEGGTHLTGFRAAITKVLNDYARKFNILKENDKNLSGEDVREGLTAVLSVKLPE + PQFEGQTKTKLGNSEIRTLVENVVSDKLFIFLEEHPAVAKIILDKSITAARAREAARK + ARELTRRKSAMDSSTLPGKLADCSEKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILP + LWGKMLNVEKSRMDKVYDNEKLSPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGS + HIRMLLLTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKEEYYAYDDIELDKIFKERGWR + KDDPNVNIQRFKGLGEMNPDQLWETTMNPETRTIIKVDLEDAISADEVFCKFMGDKVE + PRREYIQMHARDVSNLDI" + gene 6639..7412 + /locus_tag="Ccel_0007" + CDS 6639..7412 + /locus_tag="Ccel_0007" + /inference="protein motif:PFAM:PF01656" + /note="PFAM: Cobyrinic acid ac-diamide synthase; + KEGG: cth:Cthe_2377 chromosome segregation ATPase" + /codon_start=1 + /transl_table=11 + /product="Cobyrinic acid ac-diamide synthase" + /protein_id="ACL74395.1" + /db_xref="InterPro:IPR000392" + /db_xref="InterPro:IPR002586" + /translation="MAKIIAIANQKGGVGKTTTAVNLSSCLAYKGKKVLVIDIDPQGN + TTSGLGIDKKNIKHSVYDVIINDEPIENTLLEACIDGLMICPSNIQLAGAEVELVSMI + SRENRLKSALYYIRKEFDFIIIDCPPSLGLLTLNSLTASDTILVPIQCEYYALEGLSQ + LMNTVKLVQRHLNPQLEVEGVVLTMFDARTNLSIQVVEEVKKYFGNRVYRTIIPRNVR + LSEAPSFGLPIILYDAKSKGAECYIDLAEEVIEYTEEVV" + gene 7418..8263 + /locus_tag="Ccel_0008" + CDS 7418..8263 + /locus_tag="Ccel_0008" + /inference="protein motif:TFAM:TIGR00180" + /note="TIGRFAM: parB-like partition protein; + PFAM: ParB domain protein nuclease; + KEGG: cth:Cthe_2378 chromosome segregation DNA-binding + protein" + /codon_start=1 + /transl_table=11 + /product="parB-like partition protein" + /protein_id="ACL74396.1" + /db_xref="InterPro:IPR003115" + /db_xref="InterPro:IPR004437" + /translation="MIKKGLGRGLGALISNEALEEESGILQLRINELEPNIGQPRKNF + DDEKLVQLAESIKQHGIIQPIIVKKSDSIYTIIAGERRWRAAKLAGLTNVPVIVNNFS + NKQTMEVALIENLQREDLNPIEEAEAFLHLMDEYNLTQEQIAATIGKSRPAIANSLRL + LGLKDDVRKYIISGELTSGHARTLVIIQDEELQKKAADFIIENKLSVRETENYVKKLC + KGNNKVRKTTEVSNPELIDVENKLKNILGTKVKLQSKNNKGKITIEYYSNDELERLLD + FFYKI" + gene 8426..8956 + /locus_tag="Ccel_0009" + CDS 8426..8956 + /locus_tag="Ccel_0009" + /inference="similar to AA sequence:KEGG:Cthe_2379" + /note="KEGG: cth:Cthe_2379 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74397.1" + /translation="MNDFFRNILNIDFEILVLFGICFIFIIINCFMLIANIKKTNKLK + LKYKKFMNGLSDRNIEELLETCLNTTNSVSTKNKEIELKINKIERRLFQCIQKVGVVR + FNAFDNVGSDLSFAIALLDNNDSGVVISGIYARESSSTYSKPVVSGSSKYTLSAEEIQ + AIDIAKKTNVERSYIE" + gene 9000..9761 + /locus_tag="Ccel_0010" + CDS 9000..9761 + /locus_tag="Ccel_0010" + /inference="similar to AA sequence:KEGG:Cthe_2380" + /note="KEGG: cth:Cthe_2380 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="TPR repeat-containing protein" + /protein_id="ACL74398.1" + /translation="MNIHFHSNKENKNEKKQIWMYAVILFTGAFIILLLTAYSQVKFQ + NNISDYQNKLSSQEKAKLTAVTDLKSALKENERLNKELESLRNKLIESEQEIATQSSK + TTDIESKYNSSVIATDALIAAMEYYNNKDYVNAAVTLKYDVKIEYLSPKVINTYNDLV + EKSYGKASLKSYRDGYRDYKNKNYAGAIINLNRAIDFSKKNEYYIDDAYYYLANSYYK + SSNFTDAKRIINAFQTDYPKSEFARSMRNLLEKIS" + gene 9876..9966 + /locus_tag="Ccel_R0001" + /note="tRNA-Ser1" + tRNA 9876..9966 + /locus_tag="Ccel_R0001" + /product="tRNA-Ser" + gene 10007..10098 + /locus_tag="Ccel_R0002" + /note="tRNA-Ser2" + tRNA 10007..10098 + /locus_tag="Ccel_R0002" + /product="tRNA-Ser" + gene complement(10403..10942) + /locus_tag="Ccel_0011" + CDS complement(10403..10942) + /locus_tag="Ccel_0011" + /inference="protein motif:TFAM:TIGR00473" + /note="TIGRFAM: CDP-diacylglycerol/serine + O-phosphatidyltransferase; + PFAM: CDP-alcohol phosphatidyltransferase; + KEGG: ctc:CTC01356 CDP-diacylglycerol--serine + O-phosphatidyltransferase" + /codon_start=1 + /transl_table=11 + /product="CDP-diacylglycerol/serine + O-phosphatidyltransferase" + /protein_id="ACL74399.1" + /db_xref="InterPro:IPR000462" + /db_xref="InterPro:IPR004533" + /translation="MKNSIKHSLPNLLTFINLSLGIIALLFAIKNDLIQASLLVMVAA + LTDRFDGKVARMLDSTSELGKELDSLSDLISFGVAPIIIAWKISFFDLTIIGYLLAVM + FPIAGAYRLARYNVTTFNNVFSGVPITIAGAFLSIINLYNCFSIEHNNYSKVNTIVTA + VIIVLLSYLMISKIQIKKR" + gene 11177..11815 + /locus_tag="Ccel_0012" + CDS 11177..11815 + /locus_tag="Ccel_0012" + /inference="protein motif:TFAM:TIGR01549" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, + variant 1; + PFAM: Haloacid dehalogenase domain protein hydrolase; + KEGG: tpd:Teth39_0448 HAD family hydrolase" + /codon_start=1 + /transl_table=11 + /product="HAD-superfamily hydrolase, subfamily IA, variant + 1" + /protein_id="ACL74400.1" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006439" + /translation="MNNFKYIFFDLDGTLIDTVPLILDSFNYTFNYHFGETRPEEETI + SYIGMPLINHLRDIYPGHEEELAKTYRDYNDKRHDSCIGVFIGIFETIKILYEKGIVM + GVVTSKRRELAIRGLKIFNLDQFFIFVNGSEDSKKHKPDGDPLIVAMNRAGATNKDEV + LYVGDSPLDILCAKNAGVKSAAVAWTYSQRSDLEKVEPDIFLECPADIFKYV" + gene 11880..12416 + /locus_tag="Ccel_0013" + CDS 11880..12416 + /locus_tag="Ccel_0013" + /inference="similar to AA sequence:KEGG:Cthe_2385" + /note="KEGG: cth:Cthe_2385 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74401.1" + /translation="MAKTLVAIFEAYEMAEKAAYEIRDKGLRTDNISIITKTGDNINR + FRSTKDGDFEENRKNKNTFSRAGSISTRISDGIVTGGIIGGVIGILIGAGSMFINDIG + LVAAAAPIGGLFSGLLVGGIIGGLIDFGVPRIKKKEYEKLISNGKAIFSMMVDEDRSE + DILEILKKNGALMVEKYQ" + gene 12496..12750 + /locus_tag="Ccel_0014" + CDS 12496..12750 + /locus_tag="Ccel_0014" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2388 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74402.1" + /translation="MEISLNKAINNVVKTSEAKALANERVILLKEIEKVKGELQKAYK + NFDYVNDSLMVDYYTYQIKAYETMFEFLIKKAKAMGISEL" + gene 12880..13071 + /locus_tag="Ccel_0015" + CDS 12880..13071 + /locus_tag="Ccel_0015" + /inference="protein motif:PFAM:PF07441" + /note="PFAM: sigmaK-factor processing regulatory BofA; + KEGG: ckl:CKL_3823 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sigmaK-factor processing regulatory BofA" + /protein_id="ACL74403.1" + /db_xref="InterPro:IPR010001" + /translation="MNIGKVVKKLFINIILGVILLIIINFVGLYFGFNIALNIYSALI + IGMLGVPGLILLILLQFMV" + gene 13334..16885 + /locus_tag="Ccel_0016" + CDS 13334..16885 + /locus_tag="Ccel_0016" + /inference="protein motif:PFAM:PF01855" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; pyruvate ferredoxin/flavodoxin oxidoreductase; + pyruvate flavodoxin/ferredoxin oxidoreductase domain + protein; 4Fe-4S ferredoxin, iron-sulphur binding, + conserved site; + KEGG: cpy:Cphy_3558 pyruvate flavodoxin/ferredoxin + oxidoreductase domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein" + /protein_id="ACL74404.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR002869" + /db_xref="InterPro:IPR002880" + /db_xref="InterPro:IPR011895" + /db_xref="InterPro:IPR017900" + /translation="MSRHKQSMDGNTAAAHVAYAFTDVAAIYPITPSSPMADSVDQWS + AAGRENIFGNQVKVVELQSEAGAAGTVHGSLAAGALTTTFTASQGLLLMIPNMYKIAG + ELLPSVFHVSARTVATHALNIFGDHSDVYACRQTGFAMLAESNPQEVMDLSAVAHLAT + LEGKVPFINFFDGFRTSHEVQKIDTWDYADLKEMCDMDSVRAFRDHALTPEKPSMRGS + HENGDIFFQHREACNTTYDKLPAIVEKYMAKVNAKLGTNYDLFNYYGAPDADRVIIAM + GSFCDVAEEVIDYLTAAGEKVGLIKVRLYRPWVSSSLLKVLPETVKKIAVLDRSKEPG + ALGDPLYLDVATTLREAGLNDIVVTNGRYGLGSKDTPPSSVFAVFTELKKDAPKPRFT + IGIVDDVTYLSLPEVKPAPITAAAGTVECKFWGLGGDGTVGANKNSTKIIGDHTDKYI + QAYFQYDSKKTGGVTISHLRFGDKPIKSPYYVNQADFVACHNPSYIVKGFKIVQDVKP + GGIFMINCQWSDEELNSKFNAATKKYIADNNIQLYTINAIDKAAEIGMGKRTNTILQS + AFFKLANVMPIDDAIKFMKEAAKKSYGKKGDAIVEMNYKAIDAGVSALHKVTVPASWS + NPEADPAEPKLDGRPELVDMVKNLLNPISLMDGDSLPVSAFANIADGQFEMGASAYEK + RGTAVLVPEWDASLCLQCNSCAFVCSHATIRPFMLSEDEIKAAPSNIKLADTRPKASE + YKFTMSVSPLDCMGCGECITVCPVKEKAIKMVPQESQAQEQPVFDYLVANVGKKPGMP + ADTTVKGSQFNQPLLEFSGSCAGCAETSYARLVTQLFGEQMYISNATGCSSIWGGPAA + TSPYTVNKDSQMGPAWANSLFEDNAEHGYGMQLGQKVLREQAIAKIEKLAVSDKASDE + LKAAIAKFIETKDMTRENTPATKALVVELEKAAAAGCDLSKEILEKKQYLSKKSVWIL + GGDGWAYDIGFGGLDHVLASGENVNVMVFDTEMYSNTGGQVSKASNIGGVCQFAASGK + EIGKKSLAEIAMTYGYVYVAQIALGANPNQTIKVIAEAEAYNGPSLIICYAPCELHGV + KGGMNHCQDEMKKAVASGYWNLFSFNPALKAEGKNPFTLTSKPGDGTYQDFLNNETRY + TRLQRSFPERAERLFKESEKAAKERYEHLVKLVELYK" + gene 17239..18222 + /locus_tag="Ccel_0017" + CDS 17239..18222 + /locus_tag="Ccel_0017" + /inference="protein motif:TFAM:TIGR02906" + /note="TIGRFAM: spore coat protein, CotS family; + KEGG: cth:Cthe_2398 putative spore coat protein" + /codon_start=1 + /transl_table=11 + /product="spore coat protein, CotS family" + /protein_id="ACL74405.1" + /db_xref="InterPro:IPR014255" + /translation="MNEFERELQLNYNLKIKSLTNFRDMFLADTDIGKKLIKIASVKR + ERINFIGEVKEHLFNNGFIHIDRNIPTVKGDYSIQFNEQTVYITDYIEGRECNLESKE + ETIGCAGLLAKMHRASYGFVCSENSLGRSELGRLPGSYRKRLDEIKKLRKNAQKGRMK + FDNLVSKNIDYFYEVGEQALDLLLISDYYGLVEEAQKNRTISHHDFNHHNIYIQNNEM + FLINFEHCCYDLKVYDLINLLRRKMRKCNWDINEAVIILNEYSRYEALSGSDMVLMKI + MLMFPQKFWRVINKYYNSRKSWSEQSYLLRIQEVIDEAQCHRVFLEKFSAL" + gene complement(18289..19959) + /locus_tag="Ccel_0018" + CDS complement(18289..19959) + /locus_tag="Ccel_0018" + /inference="protein motif:PFAM:PF01268" + /note="PFAM: formate-tetrahydrofolate ligase FTHFS; + KEGG: cth:Cthe_2399 formate-tetrahydrofolate ligase" + /codon_start=1 + /transl_table=11 + /product="formate-tetrahydrofolate ligase FTHFS" + /protein_id="ACL74406.1" + /db_xref="InterPro:IPR000559" + /translation="MQTDIQIAQRCKMHHIADIAKNLGIDTEDIEFYGNYKAKLSDKL + WDKVKNKKDGKLVLVTAINPTPAGEGKTTTTVGLGQAMARIGKNAVIALREPSMGPVM + GIKGGAAGGGYAQVVPMEDINLHFTGDMHAITAANNLLSAAIDNHLQQGNMLNIDSRQ + IVWKRCMDMNDRALRNVIVGLGGKINGVPREDGFNITVASEIMAILCLALDIKDLKKR + LGRIIIGYTYEGKPVTAHDLKVDGAMTLLLKDAIKPNLVQTLEGTPALMHGGPFANIA + HGCNSISATKLALKLSDYVITEAGFGADLGAEKFFDIKCRFAGFKPDAVVLVATIRAL + KYNGGVRKEDLKEENIDALSKGFANAEKHIENLKQFGVPVMVAINHFDTDTEAEIKLI + QEKCSSLGVEVAFSDVFLKGGEGGIELAEKLVALTDSTVSNFAPIYDEKLPIKEKVQQ + IVSKIYGGRNVIYNAAAEKSIAKIEEMGLDRLPICMAKTQYSLSDNPALLGRPQDFDV + TVKEVRISAGAGFLVVLTGDIMTMPGLPKVPAAERIDINESGVITGLF" + gene 20228..20431 + /locus_tag="Ccel_0019" + CDS 20228..20431 + /locus_tag="Ccel_0019" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbt:CLH_0458 sporulation peptidase YabG" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74407.1" + /db_xref="InterPro:IPR013838" + /translation="MREIEIGSLVYRKSYEKDVLFRVCDIKNCDGRKIIILKGVDVRL + IADAEEDDLDIIDVHEDEQHKVM" + gene 20580..20846 + /locus_tag="Ccel_0020" + CDS 20580..20846 + /locus_tag="Ccel_0020" + /inference="protein motif:PFAM:PF06257" + /note="PFAM: protein of unknown function DUF1021; + KEGG: cth:Cthe_2401 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1021" + /protein_id="ACL74408.1" + /db_xref="InterPro:IPR009366" + /translation="MIDKGELFQIKRDIEGCVGEKVQLTANKGRKKSFIREGVLENTY + PSIFVVKFENEYDNTRRVSYSYTDILTKAVELVVCKDDKKIQVC" + gene 21120..22688 + /locus_tag="Ccel_0021" + CDS 21120..22688 + /locus_tag="Ccel_0021" + /inference="protein motif:PFAM:PF01476" + /note="PFAM: Peptidoglycan-binding LysM; + KEGG: cth:Cthe_2402 peptidoglycan-binding LysM" + /codon_start=1 + /transl_table=11 + /product="Peptidoglycan-binding LysM" + /protein_id="ACL74409.1" + /db_xref="InterPro:IPR002482" + /translation="MSLELLKQAFKVSNLLGEDTIDNVIENDIIVPDVKPDIAKILLL + DGDVFVTGCDTGTDRAVVSGCLLVKILYISEDENRSVKSITTNIPFSYTLDIPGVRSG + VKSRAKGTIEHIDYTLLNERKVNIKAIISINCKVTDEIEREISSGITGIDDIQVLKDD + IDINTYLGSNKVNFILKEDMELPSTKPSVAEILRNDLKISGKDFKITDGNVVVKGDIN + IATLYIADDETRSMQYMENELTFTQFIELEDVKEDTSVNVDFDLIDYKIEPFEDSDGE + NRNLRAEATINIYVTGLCKRSYEVLSDAYSPIIRINLEKQQFSIDETVSENRSQLIVK + DTLNFEDFNPEVREIFNVISRCSVSETHLEDEKLNIEGSVLNNVIYLSNDEEQPVFCH + SKEIPFKHVVEIKGLKNDMKVDTNVEIEHCNYSMLSSDQVEIRCAIGINARVETNKVI + PIINKATEGIIDEKKLLSMPSVIIYIVQPGDSLWKIAKKYSTTVENLLMVNNLNDKDV + LMPGQQLLILKRAM" + gene 22884..23735 + /locus_tag="Ccel_0022" + CDS 22884..23735 + /locus_tag="Ccel_0022" + /inference="protein motif:TFAM:TIGR00154" + /note="TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol + kinase; + PFAM: GHMP kinase; GHMP kinase domain protein; + KEGG: cth:Cthe_2403 + 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase" + /codon_start=1 + /transl_table=11 + /product="4-diphosphocytidyl-2C-methyl-D-erythritol + kinase" + /protein_id="ACL74410.1" + /db_xref="InterPro:IPR000870" + /db_xref="InterPro:IPR004424" + /db_xref="InterPro:IPR006204" + /db_xref="InterPro:IPR013750" + /translation="MITLNAHAKINLSLDVLSKRQDGYHNLKMIMQTLQLHDTITIQE + IKSGIEIECEAAYVPNNSSNIAYKAAEKMVVKYGLDAGVRISIDKKIPVAAGLAGGST + DAAAVLKGVNSLFKLGLDQQELMEIGKTIGADIPYCIRGGTALAEGIGELITPLPRME + PIPVLLVKPRFGVSTASVFKSLEIDKITDRPKTELLINALQRKDTHFIANNLCNVLES + VTAARYPLIDKIKKDLITKGAIGSIMSGSGPTVFGLFDDTEVAKKAFGILKKSRNDCI + LTYITND" + gene 23752..24438 + /locus_tag="Ccel_0023" + CDS 23752..24438 + /locus_tag="Ccel_0023" + /inference="protein motif:PFAM:PF07729" + /note="PFAM: regulatory protein GntR HTH; GntR domain + protein; + KEGG: cth:Cthe_2404 GntR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL74411.1" + /db_xref="InterPro:IPR000485" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011711" + /translation="MAGKLSKINLNDYKPLREVIFNSLREAIIIGELRPGERLMEVQL + AEKMGVSRTPVREAIRKLELEGLVDMIPRKGAHVAELSIKDIMDVLEVRASLDGLATS + LAAERITDDELKELKHINSQFANYIEKENLNGSIKKDAEFHDIIYRASRNDKLISIIN + NLREQVQRFRVIYLKDYNNSKNLIKEHNDIYEAVSSRSMENARNIAKTHIINQESTIL + SSLKMQKGNS" + gene 24516..26117 + /locus_tag="Ccel_0024" + CDS 24516..26117 + /locus_tag="Ccel_0024" + /inference="protein motif:PFAM:PF00004" + /note="PFAM: AAA ATPase central domain protein; + SMART: AAA ATPase; + KEGG: cth:Cthe_2407 AAA ATPase, central region" + /codon_start=1 + /transl_table=11 + /product="AAA ATPase central domain protein" + /protein_id="ACL74412.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /translation="MWFNEFLSKYKSGISHEFLFYFNVKDTMDNTRNFFRYIDDEFIK + QRNFGIVAFYDISRGLTFLAPEMEREFKKIAGNEASKLFFSLPSRIFPFIDIALKSTK + MALFIDHAEKIVPSGDIGSMTLEERMALIWMTEWSVNSKISSVGSTIFMLADNLADIS + REFLNSSYRIEPILVELPGEDERKNYIEFLLQDKSTSSEISIDEFAKLSSGLSRKSIK + DIKLKAEAEGVPITFDFIKEKKHGVLQKEYGDVLDFIYPEISFEDIGGMEAAKSYLTK + NIIEPIRRGDSRRVPMGILLCGPSGTGKTLLVEALAKSSGFNCVKIDMSRILGQYVGE + SEKNFKKCLLGAKSQEPVIVFVDEIDTAFRRGESGDSGVSRNIFSEFLQFTSNTNNRG + KIIFIAATNRPDLLDAALKRAGRFDKKIPVLLPEKEERAEIFRIIIKKYGINTDIQDF + VPYSEMAENYTGAEIDTVVRKAYELACNMKENHPVITDTILKEALKKCRPSTQEIEFM + TELAIAECDDIDLLPEKYWPRFDRT" + gene 26265..26996 + /locus_tag="Ccel_0025" + CDS 26265..26996 + /locus_tag="Ccel_0025" + /inference="protein motif:PFAM:PF04012" + /note="PFAM: PspA/IM30 family protein; + KEGG: cth:Cthe_2408 phage shock protein A, PspA" + /codon_start=1 + /transl_table=11 + /product="phage shock protein A, PspA" + /protein_id="ACL74413.1" + /db_xref="InterPro:IPR007157" + /translation="MGLFSRLGQMFRGFFGLFVGNLEERNPEALFEDIKNQIDKARRQ + AEQQIIEIQTSAEMIKIEMKTAEKNLIAIKARVESAQRVGDKELLVELLVQEEEYQTV + YETHKATYENAMVQVEKIREDYKIFESEMNGKLNELKTLKSQAKMANLRENINSVNAQ + YTSKNSRVGNVNDSLDRARDIVNKKTARANAVESLNQDNLDMKLKKLDMNSARDRARA + RAEALLGGDNGGFEVKEKTDNKISN" + gene 27021..27515 + /locus_tag="Ccel_0026" + CDS 27021..27515 + /locus_tag="Ccel_0026" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: ckl:CKL_2298 acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL74414.1" + /db_xref="InterPro:IPR000182" + /translation="MDTHIREAIEEDLPKITDIYNWAIKNTTASFDINPQTIEQRAVW + FSHYGGDRFPLIVYIEDGEVAGYASLSEFRTKEGYKNTCELSVYVQPDFQKQGIGKKL + MDYIIQLGRDVGYHNIISCITTDNIISIQMHEKKGFKLCGELKEVGYKFGRYLDCLFY + QLLL" + gene 27546..28373 + /locus_tag="Ccel_0027" + CDS 27546..28373 + /locus_tag="Ccel_0027" + /inference="similar to AA sequence:KEGG:Cthe_2409" + /note="KEGG: cth:Cthe_2409 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74415.1" + /translation="MNSNLFVSALLRFRNFSTLLIWTAIVNLVSGNGQVQNMIASQTA + DYSLVLAGAYGTGVLVYVAMVMQSMFSNNYKEEVKRKEKRKEINDLNRQCNRLSVQAR + NYGNPIQKQKLRKIMQDKNDIFNSQKRGDEYSYLKEKIVEQSLKLVISYTKLMMNYSI + RSKELSEININQLMNKINANRRKISFMKDDRMLDDINNVIEMDEKAIQRVKDERNELE + RIHARLDYIESMLNMFKHQIISSIESEEMVEKLETAVNEATALDSVLQERRRNQISL" + gene 28447..30024 + /locus_tag="Ccel_0028" + CDS 28447..30024 + /locus_tag="Ccel_0028" + /inference="protein motif:PFAM:PF03961" + /note="PFAM: protein of unknown function DUF342; + KEGG: cth:Cthe_2410 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF342" + /protein_id="ACL74416.1" + /db_xref="InterPro:IPR005646" + /translation="MSVNIAIYSSPYISITQRDDGYYIQSFKKGLSIDEFQKILNSHP + EIKVTNFTTIKNALVLAPQDPRRFASAKERISIEVSGDELRAFVTVNVGQPEVLGTEI + VKEVVLELNRRGVVYGIKKDVLLNLVAGKTVLIAEGEPPQNGVNSQNRLYQIKEAKPE + IKEDGTADHYDLNLINMVSAGEWLGEKIHATPGKEGKTVYGNPIKPLPGKDYPIFFDR + KTVKAVEEEGKTTLYATRNGAVYFAGDSISVSNHLEIDENVGVKTGNVDFDGYLTVKG + TIEDNYTVTTTKDIEVLSDYGVGSCKEISSREGSIYIRGGIAGKGKTVIKCKKNLYLK + FVADAEIICDGSVHVGFYCLNSNIIAKEVILESLKGQIIGGNITADIRVLAATYGTPS + EKRTNICVKGFDRIALKDSLEQLVQEIDQLKTSMNQYKQQISIFNISDAVKSRKSEYE + KLNENYNNIRAELQVKEELRKNIAGYLKVKGEGEISILKKAFPNTFFEIKRIQKEIQT + PILRTSFYYSEGTIKEL" + gene 30070..31995 + /locus_tag="Ccel_0029" + CDS 30070..31995 + /locus_tag="Ccel_0029" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hau:Haur_4114 multi-sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74417.1" + /translation="MKYQSILQRLEDEKRDEVLSAKLYRYTGLMQAIEYFSQKLVFKQ + IIEAAFDFINELLLVNNSIVYVLEEGKYTAKKVKGFKDYPKEIEATSTLENLAALYGN + VLYEKDKIARFFDMEMVSNMGINAVVPLIIEEHLYGFIMINGKDFVDDEYIISESLMR + LINTALENYSRYEKLAKVNKELDEKVFNLFAINQSSKVLLSELRINTLYNLSVELFSE + LTRSMVTSFILYDERSGRYVLKGFKDVFYKIKDAFISLSLNQTYKIDPNKVIIDLGNP + DDSHYFYNLFEDSAIQVDKLEAKYIVIIIKESEILGFVTLSKTVTGDNYSSGVFELIE + SLASSMYIAVSNANLFKQVNEQKQIIQRKLDKLICLNKLIKNISSSLRIDTLMEVAAK + TLEISFNLQKGLLCLYDKDSDEFSISESIGLDGNLNKNILPNNKWRRVFEGDCVYEIG + KDKVAEYIGYEVAERVGEAQGILIVPIYVDTLEVELSGVIIIFKYDGLLLDNEENLIT + LETIAGHIAPVLKNLSVIQMQQRFMLPNFIELFKNELKGEIRDAMDYNINLSVIQVED + KRDFIFKGTSIIDSIKENFKKVYPFSYNNVFIIENEDENIEERIKRCTGISDLKIRKM + VLGKDFKDFANFFDLFR" + gene 32022..32426 + /locus_tag="Ccel_0030" + CDS 32022..32426 + /locus_tag="Ccel_0030" + /inference="protein motif:TFAM:TIGR00516" + /note="TIGRFAM: holo-acyl-carrier-protein synthase; + PFAM: 4'-phosphopantetheinyl transferase; + KEGG: cno:NT01CX_1261 4'-phosphopantetheinyl transferase" + /codon_start=1 + /transl_table=11 + /product="holo-acyl-carrier-protein synthase" + /protein_id="ACL74418.1" + /db_xref="InterPro:IPR002582" + /db_xref="InterPro:IPR004568" + /db_xref="InterPro:IPR008278" + /translation="MEMLLGTDIIEVDRIKRAIENGGRKFSEKVFTLNEIEYCESRKA + GKYQSYAARFAAKEAVSKAFGTGIGKNAAFSEIEILKDSLGKPYVRLSGKAKEFYDSL + GTAGISVSLSHCRAYAVAYAVISLGDSFKNKI" + gene 32453..33592 + /locus_tag="Ccel_0031" + CDS 32453..33592 + /locus_tag="Ccel_0031" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: cth:Cthe_2411 metallophosphoesterase" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL74419.1" + /db_xref="InterPro:IPR004843" + /translation="MKQVSFIHTADIHLDAPFSSLGDKEKADIRRQELEDGLKNIIDR + VRIQNVDLLIISGDFFEDSHIRGSTIIGVKNLFSELYGTEVIIIPGNHDPLKENSFYH + TIGWGENVHILTDSNQVLFLKKCNTCIYNMGAIGNVAGDFSNIKEKDISADTFNILVF + HGTIDMPFEESNYNSIGSKDIFELGMDYVALGHMHNYIRFQNRTSLMINPGSPIPMGF + DEEGVHGFIQGKIMYTDDNKKLVEADFVPFSSRNYYNIELDVTGCNRNEEIIQKLSTD + DNINFSNKDLYSLTLRGFIPKDFTPDIKYLMELLKNKCFYVRIKNETSIQFDYEQYLE + DPGIKGEFVRMLMDMQENEDSQDRKEILYMAIQYGLQAMENNRVD" + gene 33613..35607 + /locus_tag="Ccel_0032" + CDS 33613..35607 + /locus_tag="Ccel_0032" + /inference="protein motif:COG:COG4717" + /note="KEGG: cth:Cthe_2412 SMC protein-like protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74420.1" + /translation="MKIKRLHVRGFGKLQDFNCDFSDGLNVIYGHNESGKSTLMAFIK + AILYGVKGGRTGKNGVLPDSRRYMPWNSSQYGGYMNIELNDGCLYRIDRNFLTNEVNI + FDSSFNDISVNFIDGRDINSVGEKLVGLNESLFERTVFIKQMGTRIDTSTSKDLVDRI + SNIQQSGFEDISYIKAQNALKEALKRQVGTDRSYTRPLDIINQRLAELQEKKINLLNE + EKRLEELREKQQDISMKINELKFKYRLLNRIIDYCKLKERLQFLNEKNEEIYFLEESA + RQVQENITKLEEDKKSVILHLNNNQVARGKKLRSIDVFLMICITATLTVGLAAVVFNI + LSPLFTLIPFLPALASLVLRIGIVKREEEEFKTNKTKELNRQLLEFDERITQNKTQYQ + KLTDRIENINTVVGSEVPAVLESKIVGDYINIMRDKQNVEDQLTQNEKELIDELSKDS + HGSLLVKAFSINKTVILDLQRLEDEYSEVARMVENGNNISISDIDNEISRLSSQKKSL + ESKGEALKIAIITLEAAAEQVRKKYVPLMNRVLNSTFSNLTSKKYNDVRTGDNLKIML + DNPETQTLVPVSTLSDGTIDQIYLALRVAISETVLQNHECMPFIMDEPFAQYDDERTF + NALKYIAHISNKQQVIIFTCKKREVELISSEFPCKICSLT" + gene 35660..36586 + /locus_tag="Ccel_0033" + CDS 35660..36586 + /locus_tag="Ccel_0033" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; SH3 type 3 domain protein; + KEGG: cth:Cthe_2413 NLP/P60" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL74421.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR013247" + /translation="MRKHLIIYIFAVTTAIILTLAGCGNRDIPVTKNEQYVSGITWDN + AAIINDAVVDVFSRNDILSTRITQALFNQIVKIVSQEGSWTRIMLLDGTTGWVKTKYI + SRDTSCVTDGSINNKIVVTAKTVYVYIGTDNDIKYKQVVLGTELYSVSKTKTGYDVLL + PNNKKGWVEDGGVIAVPVSQNSIPKTSAQGFIQTVSKFEGTIYIIGGVSRWGIDSPGL + CYISSRINGVEIPRNIKEMAKTGTGVTLDEMKPGDLLMFSTDNVKKDVSGVGVYKGNN + EFIHSSPSRGVVTDSLEDSYYKNRIVDIRRIF" + gene complement(36592..37704) + /locus_tag="Ccel_0034" + CDS complement(36592..37704) + /locus_tag="Ccel_0034" + /inference="protein motif:PFAM:PF06925" + /note="PFAM: Glycosyltransferase 28 domain; + Monogalactosyldiacylglycerol synthase; + KEGG: cbl:CLK_3302 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Monogalactosyldiacylglycerol synthase" + /protein_id="ACL74422.1" + /db_xref="InterPro:IPR007235" + /db_xref="InterPro:IPR009695" + /translation="MRVLILYVSVGTGHMKAAEALKESIERQFPDWKVDVLDALKYIN + PVIDKIVVSSYLGTLKRNPKLYSMIYTASGTGTGIYDTSKAVNKLLSYKLKSLINDYK + PSAVVCTHPFPMQMLSSLKRKNKLNIPTMAILTDYVVHSLWLDSGMDAFIVANDNMKS + EMIRRGIPDNIIFPYGIPVSPKFLASTNKKDLLLKYGMEDKFTVLVMGGGMGFGNIEK + TMASLLDCNVDIQIIAVTGTNQKLKFQLEEYAAQSSKKVLILSYTDRVNELMDISDLL + ITKPGGMTVSEALVKGLPIFIISPIPGQEEGNANFLIRSGVANKIDSFNNLVSILSQV + TNDPYTLKIMRENSKELGKPHSAHDIAALLGKLVTG" + gene 37904..38599 + /locus_tag="Ccel_0035" + CDS 37904..38599 + /locus_tag="Ccel_0035" + /inference="protein motif:TFAM:TIGR02869" + /note="TIGRFAM: spore cortex-lytic enzyme; + PFAM: Peptidoglycan-binding domain 1 protein; cell wall + hydrolase SleB; + KEGG: cth:Cthe_2415 cell wall hydrolase, SleB" + /codon_start=1 + /transl_table=11 + /product="spore cortex-lytic enzyme" + /protein_id="ACL74423.1" + /db_xref="InterPro:IPR002477" + /db_xref="InterPro:IPR011105" + /db_xref="InterPro:IPR014224" + /translation="MRKYKIIALFLLIVFSLTIVDEGRIFLTSSAPSLKIGDRGEEVK + DMQQELKNWGYFDGNVDGRFGYDTLRSVLSYQRQYGLKANGIADRTTLLTMGLAELIE + SGTANAAATSNISNEQLLARAINGEARGEPFEGQVAVGAVILNRVNNSKFPKTVAGVI + YQPGAFTAVSDGQINVPIDPKSTVVKAARDALAGWDPTDGCLYYWNPATATSKWIWSR + KVRYKVGKHWFGV" + gene 38615..40006 + /locus_tag="Ccel_0036" + CDS 38615..40006 + /locus_tag="Ccel_0036" + /inference="protein motif:TFAM:TIGR02889" + /note="TIGRFAM: germination protein YpeB; + PFAM: Propeptide PepSY amd peptidase M4; + KEGG: cth:Cthe_2416 peptidase" + /codon_start=1 + /transl_table=11 + /product="germination protein YpeB" + /protein_id="ACL74424.1" + /db_xref="InterPro:IPR005075" + /db_xref="InterPro:IPR014239" + /translation="MAENGFHLNDRRRSWAVPLAIVAILALVGVSLWGYYQNRQLKRL + QVLMTNQYNRAFVDLSDYVDNVETLMAKSLVTSTPVSTSKMLEEVWRQANLAQTNMGQ + LPIAPPILEKTSNFLTQAGDMAYSLNNKTMNGIPLNDKEYGALQKLHGYAVSLQKNLH + GIEDQITNGKMTWDKYTNKGKFMVASTSKDPKTGQFENIDKTFQEYPTLIYDGPYSDH + MLKSKPQGLGDKKVSVSDAKNIAINFIGKNKVSDVKQLENNDLGNIKTYRFKVMYKDR + KESEYAEVEVTQQGGQVYLMLSNRNIGKDTVNMGKAKKLAKDFLDSKGYKNMVDTYYQ + KVDGTAVISYAYKQGGVIVYPDLIKVKIALDNGEIIGIESKGYLYNHRVRTIPKTNIT + LEQARAKVNNKIKIDRQGEAIIPTNYKTEKYCYEFMGKVNGRNFIIYINALTGAEEDV + LMLVTTPEGTLTM" + gene 40169..40603 + /locus_tag="Ccel_0037" + CDS 40169..40603 + /locus_tag="Ccel_0037" + /inference="protein motif:PFAM:PF01047" + /note="PFAM: regulatory protein MarR; + KEGG: cac:CAC0197 MarR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MarR family" + /protein_id="ACL74425.1" + /db_xref="InterPro:IPR000835" + /translation="MEPKELNLLLIKVGAIHRRKSANEFMKQELSSGQPRILNYLFQN + NGCIQREIAVDFNMEPASITSVLNSMEKAGLIVREPVKGDKRALEVRLTDKGYEKKKV + VDDIFIKVEDACFQNFNEEEKLQAKNFLKRIHNNLLKWEPDN" + gene 40629..41084 + /locus_tag="Ccel_0038" + CDS 40629..41084 + /locus_tag="Ccel_0038" + /inference="protein motif:TFAM:TIGR00079" + /note="TIGRFAM: peptide deformylase; + PFAM: formylmethionine deformylase; + KEGG: cbf:CLI_2343 peptide deformylase" + /codon_start=1 + /transl_table=11 + /product="peptide deformylase" + /protein_id="ACL74426.1" + /db_xref="InterPro:IPR000181" + /translation="MALRNIRTLDDEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGN + GAGLAAPQVGILKRIVVIDMGDGLINLVNPEIVEQKGSQEVIEGCLSILGKWGKVIRP + TEVKVKALNEKGEEVIITGKKDMAKCLCHEIDHLDGILFTDKVTEYIED" + gene 41190..42203 + /locus_tag="Ccel_0039" + CDS 41190..42203 + /locus_tag="Ccel_0039" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: cth:Cthe_2877 S-layer-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL74427.1" + /db_xref="InterPro:IPR001119" + /translation="MKRTVSALILMGALALSSTFAFAQPTDNIENKFNDISGHWCNSA + VQMLIGKNVLPFTGDEFSPAKAITKGEFVSLLHDALGIRIEYFAAPQIKDYFEDVDQN + ASYTTDLIDLVTANIIEKGGNFNPGASFSREEMIHYVMNAYKYQMGDKYALINIKPPF + FNDDKDVSPEFGGDVGRAAHYKLISGSKGMFHPKANTTRGEAAVVISKLVSLLEKQNP + VVTVSSEADIKDDSIVMKVTITNNSKGAVSLIHSSGQKYDFVLLDSDKKELYRWSSDK + MFTMALMYSKIEAGKSVVYTETLSGEQYNTIKDKIVSMKAYVLGNSDEFTFDTKGYEI + ILK" + gene 42369..43385 + /locus_tag="Ccel_0040" + CDS 42369..43385 + /locus_tag="Ccel_0040" + /inference="protein motif:PFAM:PF02517" + /note="PFAM: Abortive infection protein; + KEGG: cth:Cthe_2417 abortive infection protein" + /codon_start=1 + /transl_table=11 + /product="Abortive infection protein" + /protein_id="ACL74428.1" + /db_xref="InterPro:IPR003675" + /translation="MENNIDRQLSSIRTDENKKRLPGPVASGLLFSIVTILLTFGGPI + LKINNRYLKSGMGELLFILLPVVAFLIIGRYDIKRTLNLRRTRPLNYLLVVLVTLFGM + PVVGVLNAITFVVIRAIFGRNLPTPRIIVNDVPTLLIALLVIGVSAAVCEEIMFRGLI + QKGYRKYGIALSLGITSVLFGLLHRDIQKAVSTILLGALIGFIVYRTGSIFTGMVAHF + TNNASAVILSFMASKMSGYLNGESIQQTQSFDFSNLPVASIGIVFLFYAIIYMGLVSG + FVALLYAFYRSTKKDVKAMEEEAVQYEFTNEKISLPAVLSMLPGLLIILFTFLYQIMK + LKWG" + gene complement(43420..44433) + /locus_tag="Ccel_0041" + CDS complement(43420..44433) + /locus_tag="Ccel_0041" + /inference="protein motif:PFAM:PF01695" + /note="PFAM: IstB domain protein ATP-binding protein; + KEGG: cth:Cthe_2418 DNA replication protein DnaC" + /codon_start=1 + /transl_table=11 + /product="IstB domain protein ATP-binding protein" + /protein_id="ACL74429.1" + /db_xref="InterPro:IPR002611" + /translation="MNRDIHSIIAREYERRQKVATDIVDQRKEQVYTKIPELYKIEAM + INQFGIKYNRLILSESGDKKFILEELTEKIRELSNARNKLLVKNNISTDFFKPPYQCE + KCKDTGYITDTSGSQRCSCYRQQIISHLFSQSNISVNGNECFDNFNEMLYPDEIDEAK + YGITISPRENINSIKESCIKFIKNIDDPNQKNLFFNGRTGVGKTFLSFCIARELINQG + RTVLYLTAPALFDIITGHKMRTFKEDDFIDDRYQSIFSVELLIIDDLGTEPLSDARYA + ELLNILNSRQSQSSVRTCKTIISTNIGPKKLYELYTERITSRIVGYFDRLVLAGKDIR + LLQ" + gene complement(44466..45452) + /locus_tag="Ccel_0042" + CDS complement(44466..45452) + /locus_tag="Ccel_0042" + /inference="protein motif:TFAM:TIGR01446" + /note="TIGRFAM: primosome, DnaD subunit; + PFAM: DnaD and phage-associated region; + KEGG: cth:Cthe_2419 DNA replication protein DnaD" + /codon_start=1 + /transl_table=11 + /product="primosome, DnaD subunit" + /protein_id="ACL74430.1" + /db_xref="InterPro:IPR006343" + /translation="MYFEDFKSLLYSDTLVSDIFISQYMPSMDSTCVKVYIYMLFLCK + HNKKVTSDELAKTLNLSLDEVKSALTNLDNLEVITWVEDKIQLNDLKEAEINRMYKLK + AISTPEQANENFEKNKSRNNTLAAINSKFFQGLMAPNWYLTIDNWFTIYKFDEDVMYT + LFKYCHDNNTFHKSYIEAVATNWHRRGIQNFFDLEKYFEDMAQVRGIKGTIIKKLRLR + RALTEYESEYVERWVIDYKYGFDVIELALKKTVGKTNPDFKFLNSVLTRWHDLGLVTA + EDIHGYENSIKSQPRSGQSTQRAKTKPSQRDNFEQRDYGDEYFENFFTNTSK" + gene 45662..46177 + /locus_tag="Ccel_0043" + CDS 45662..46177 + /locus_tag="Ccel_0043" + /inference="protein motif:PFAM:PF00210" + /note="PFAM: Ferritin Dps family protein; + KEGG: csc:Csac_2712 ferritin, Dps family protein" + /codon_start=1 + /transl_table=11 + /product="Ferritin Dps family protein" + /protein_id="ACL74431.1" + /db_xref="InterPro:IPR008331" + /db_xref="InterPro:IPR009040" + /translation="MISEKMNDLLNRQVQKEFYSAYLYLGFEAYFQHQNLDGFANFFR + VQVQEERDHAMKIFNYITQAGGKVKLYQVDEPEDNFNSAEEIFEQTLKHEQEVTKSIY + NLVDNALAEKDHGTNTFLQWFVTEQVEEEATVDKVLRKLQLIKNDPHALLMLDAELAT + RVYTAPAAETV" + gene complement(46249..47865) + /locus_tag="Ccel_0044" + CDS complement(46249..47865) + /locus_tag="Ccel_0044" + /inference="protein motif:PFAM:PF00496" + /note="PFAM: extracellular solute-binding protein family + 5; + KEGG: cth:Cthe_2961 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 5" + /protein_id="ACL74432.1" + /db_xref="InterPro:IPR000914" + /translation="MKRILALVLSLATIITVFAGCGSPSSNDTKGITASIASEPASID + PSLNKSLDGGTYINYAFEGLTTYDKEGKIVPGTAEKWDVSADNKVYTFHIRKDAKWSD + GKAVTANDFVYSWKRAVDPKTASDYAYYLYFVKNGEAINTNGADINTLGIKAIDDNTL + EVTLENVCPFFTEIVAFPTLVPLREDVVSKNPDKWTLDPKTYIGNGPYVMTDWKHSSK + LVFEKNENYWGKDNVVAPKIEWLLMNDPNAILGAFKNKQLSFARNIPHDEIPAEKDAG + NLQIFPQLGTYYLDLLNTKAPFDNPKVRKAVSLAIDRNYITEKVRKAGETPASGFVPY + GIADVSQDPDFRTKGGDFYSVKPEDYEKNVAEAKKLLAEAGYPDGKGFPKITFGLNTG + SGHEAVAEAIQQQLKTNLGIEVEIQAQEWNVFQESRKNGLFDIARDGWIGDYMDPSTF + MDLITSNNPQNNSKYNNAAYDKAIADARKETDPAKRMQLYHDAENLLMEEAGVAPLFF + YTDPLIIDKNLQDYVVTKLGFIYLQWASFK" + gene complement(48051..49049) + /locus_tag="Ccel_0045" + CDS complement(48051..49049) + /locus_tag="Ccel_0045" + /inference="protein motif:TFAM:TIGR01727" + /note="KEGG: cth:Cthe_2962 oligopeptide/dipeptide ABC + transporter, ATPase subunit; + TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase + subunit; + PFAM: ABC transporter related; Oligopeptide/dipeptide ABC + transporter domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="oligopeptide/dipeptide ABC transporter, ATPase + subunit" + /protein_id="ACL74433.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR010066" + /db_xref="InterPro:IPR013563" + /db_xref="InterPro:IPR017871" + /translation="MENNSNGNKSPLVEIRNLKQYFTIKNTDGKKAYVKAVDDVSFDI + FKGETLGLVGESGSGKTTLGRSMLRIYNPTSGSVKIDGVDITKFQGKKLLPYRKKMQY + IFQDPYASLDPRMTVSDIVGEALDIHGLASSKSDRADKVRELLTLVGLNTEHASRYPH + EFSGGQRQRIGIARAIAVQPDFIVCDEPVSALDVSIRAQIINTLEEMQDRLDLTYLFI + SHDLGVVRHTCDRVGVMYLGHIVELVESEELYKNPMHPYTRALLTAIPEPNPDTAKKR + NRIILKGEIPSPVNPPSGCKFRTRCPYAKDVCSKKTPELADHGNGHFVSCHFAGEI" + gene complement(49039..50049) + /locus_tag="Ccel_0046" + CDS complement(49039..50049) + /locus_tag="Ccel_0046" + /inference="protein motif:TFAM:TIGR01727" + /note="KEGG: cth:Cthe_2963 oligopeptide/dipeptide ABC + transporter, ATPase subunit; + TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase + subunit; + PFAM: ABC transporter related; Oligopeptide/dipeptide ABC + transporter domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="oligopeptide/dipeptide ABC transporter, ATPase + subunit" + /protein_id="ACL74434.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR010066" + /db_xref="InterPro:IPR013563" + /db_xref="InterPro:IPR017871" + /translation="MNNKLLEINDLKVSFFTPAGEVKAVNGISYSLEPGKVLGIVGES + GSGKSVSSYSVIGLIDKPGKIVGGSITFNGKDVSKMSKQERLAMAGNEIAMIFQDPMT + CLNPVFTIGNQIAESLYHKYGKISKDDVKKRSMDLLSLVGINEPEKRLSQYPHEFSGG + MRQRAMIAMALAGEPKLLIADEPTTALDVTIQAQILELLKDIQKKTGMAIVLITHDLG + IVADMADDIIVMYGGKIVEQGSVYSIFKNPHHPYTKGLLRSLPDLNAKGSKLIPIMGN + PIDLLHLPSGCAFAPRCEECLKVCISNMPEAYKDADGHTTSCWLMDERAKESVEEHKN + GK" + gene complement(50186..51181) + /locus_tag="Ccel_0047" + CDS complement(50186..51181) + /locus_tag="Ccel_0047" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cth:Cthe_2964 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74435.1" + /db_xref="InterPro:IPR000515" + /translation="MNTMNDTKVLEKNLFLPATDEEKATTEIMRPSVSYWRDAWNRLR + ANKVATGALVVIILIILAAIIGPIISPYTYEQINKGQENLKPSMQHIFGTDSLGRDLF + TRTMIGARISLAVGVVAAIMISIIGIIYGAISGFFGGWVDNIMMRIVDIVYSIPTILI + VILLQVVLKKPIDIYIQSGHAPAFLNSMGVGLISIFLVMALLYWVDMARIVRGQILAL + KEQEFVLAAKVLGASNRSIIFKHLIPNCIGQIIVVTTLKIPEAIFTESFLSFIGLGVS + SPMASLGSLSQTALKGIYSYPYMLIFPAAAISVIILSFNLFGDGLRDALDPRMKK" + gene complement(51198..52121) + /locus_tag="Ccel_0048" + CDS complement(51198..52121) + /locus_tag="Ccel_0048" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cth:Cthe_2965 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74436.1" + /db_xref="InterPro:IPR000515" + /translation="MGKYVFKRLLLSLLTLWIMFTITFFLMHLVPGNPFIGEKKMTAE + MLANLNAKYGLDKPLGVQYVNYAKNVLRGDFGQSIQLIGQDVKDIIAQKFPYSLRLGV + FASALAIISGTVLGVLSALKKNTAVDRLIMVVVTIGIAVPSFVVATLSMIIFGVQLRI + LPTISDLSTISSYILPGFALSFFPLSFITRLMRSSMLDVINQDYIRTARAKGLSDKVV + IFKHALRNGILPVVTYAGPMVASVLTGSFVIESIFSIPGLGSTFVTSITGRDYTTVMG + VTIFFGTILILMNFIVDVVYRFIDPRIDIIN" + gene complement(52670..54397) + /locus_tag="Ccel_0049" + CDS complement(52670..54397) + /locus_tag="Ccel_0049" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: dsy:DSY4790 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74437.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MFKLMDNAKIRVKLVLLIFAMIIGMVLVGSMGWFQTRKAQRALD + TMYNDNLNQVASLSNAGTALMTDFTNILRLIASDNTSYQMAVLSDIIEKEKNLDINIK + KISTTNLGSDEDKIYASIKENITAWKEIKNKIIELSTSGNTQEASAIYSDNGDTLFRK + LEASVTSLINANIKEASDVYAKSLESARQASLFLIILMIAVSMVCIIIGIVIARSITG + PISTIVSIIRKTAGFDLVFDESYNSMINRKDEIGIIINSISDMRHSLNNTITELHNIS + GTMAANSEELTTSTAESTKSITQVTASLDEIAKGNANQSEVVSKTSEHITEIVEHISQ + ANDATIENEKAVILSLEAVTEGYNAIVLTSEKVLESTSVSEEVNRSLEDLSKSVIKVG + SITDVINSLASQTNLLSLNAAIEAARAGTAGKGFAVVADEVRKLAEESSNAAKEINSI + VQAIIANNAMTADKMERAKELEAEQSSAVDTTKQAFDKIKISVEVIADKTKKVSEMLN + TIDKASKEISSHTHDLSTLAEESAASSEEISASCQQQLSAMEIIAKASSDLSVMAQQL + DGEINKFRL" + gene complement(54709..54785) + /locus_tag="Ccel_R0003" + /note="tRNA-Arg4" + tRNA complement(54709..54785) + /locus_tag="Ccel_R0003" + /product="tRNA-Arg" + gene 55000..55911 + /locus_tag="Ccel_0050" + CDS 55000..55911 + /locus_tag="Ccel_0050" + /inference="protein motif:PFAM:PF00781" + /note="PFAM: diacylglycerol kinase catalytic region; + KEGG: aoe:Clos_2864 diacylglycerol kinase catalytic + region" + /codon_start=1 + /transl_table=11 + /product="diacylglycerol kinase catalytic region" + /protein_id="ACL74438.1" + /db_xref="InterPro:IPR001206" + /db_xref="InterPro:IPR005218" + /translation="MKHVFIINPAAGKGRALKLIPIIQEYFKGKSDEYLIKVTEYPGH + ATKIAREYAQGEVCRIYSLGGDGTVNEVVNGIAGTNASLGVIPAGSGNDFIRSICGEY + NVREVVADTIGGEERRIDLAMANGKYFINISSIGFDADVVYNAQKFKRLPCVTGSMAY + LFSLIYTIFKNKINEVIVTIDDKKINLKILLAAVANGRFYGGGMLPAPDAVLDDGLLD + ICLVQEVNRLKMLTLFPKYMKGEHGQIKYVSFLRGRKIKIESKKTISLNIDGEILTGK + DIEFEILKGAINVIYPVGTIKECVANF" + gene 55929..57095 + /locus_tag="Ccel_0051" + CDS 55929..57095 + /locus_tag="Ccel_0051" + /inference="protein motif:TFAM:TIGR00619" + /note="TIGRFAM: nuclease SbcCD, D subunit; + PFAM: metallophosphoesterase; + KEGG: ctc:CTC00578 exonuclease SbcD" + /codon_start=1 + /transl_table=11 + /product="nuclease SbcCD, D subunit" + /protein_id="ACL74439.1" + /db_xref="InterPro:IPR004593" + /db_xref="InterPro:IPR004843" + /translation="MKIIHTGDWHIGKIVNEFSMLEDQEYILNQLISVIENEKPDALI + IAGDIFDRSIPPVDAVELVDKVFNIVLLDLRVPIFAIAGNHDSAERLSFASRILTNNG + LHIAGSFDGNIRKVILEDGFGPVNFYLIPYSDPRTIRNILQDNEISTHDDAMKKLVEK + VGQAENENKRSVMITHGYITYMGGQADIISESERPLSIGGTDIVNSNYFNSFSYTALG + HLHAPQRAGADNIRYSGSLLKYSFSEVNQKKGINVVEIDGDGNSCVKLTELKPKRDMR + IIKGPLEELLKSEVYKDTNTDDYIYAILTDKGELIDPISKLRSVYPNVMGLTKEIGIS + RDDNKTSASEGYKSKSKLELFQEFYSSIQGEPLSFEELKIIEKVIGEVETGGYK" + gene 57092..60241 + /locus_tag="Ccel_0052" + CDS 57092..60241 + /locus_tag="Ccel_0052" + /inference="protein motif:PFAM:PF02463" + /note="PFAM: SMC domain protein; + KEGG: ctc:CTC00579 exonuclease SbcC" + /codon_start=1 + /transl_table=11 + /product="SMC domain protein" + /protein_id="ACL74440.1" + /db_xref="InterPro:IPR003395" + /translation="MKPLKLTISAFGPYAGKQFIDFTTLTEQIFVISGPTGAGKTTIF + DAISFALFGEASGSSRDRDSLRSDFAEPDTETFVELEFELKGKIYKIRRMPQQQQRKL + RGEGYTLRNADAELLMPNGTLITKIVNVDERINQLLGIDKSQFKQIVMLPQGEFRKLL + ESDSSDREVIFRKIFGTEDFAEIQKRIDDDRASLEKSVHDLKTQINTHISHFDVGEDQ + TLVDMRNSKNINLEQFIYSVERLLQKDKSIIDEIKAELTETIKAQGMLKEEITKCTEV + NRKLSDREQTKQQYEALLSKGNEYSQKEKNLEYARKALPISEVDEQCRKVKQTLEVKA + GELELARQELEKRTCEFKSIAESLNTYKDLEPENKKNETELALLEKMLPKVIEYEKGL + KHLNAARAEYTQLTGEFERIQRELETNKIKESQQAETLKLIYTTEAECISLEKQISEN + RKLLIELDGIRKLMGICQEEQNSLENKRAEFASFEKNFCDFRSRLEVMEDNYIRGQAG + ILAGTLKENTPCPVCGAYDHPKPAEMPSSIPSQEQIRDSKAEFSKLTELRTEKSKAIS + ELNGSVESKYKEIIIRLKALDDIIKIDNYAELVGSGRFETVLGQINATGTGLKEKTVE + LKAQYNSKKEFTGKKDAYEKEQTQIRDKVKIQEESVQKMTAQKTGILESITKFQTEAQ + VIEKEISEDIRSASKLKARIEEQKTKIADFQKEYNQLKKLHESSREAVSNAEKEVAVR + VSSVDESREEITRQERLLKEKLASSKFGDYEQFLRMKKTQQEIDILQQEITMYYRSLN + SLKDLYRHLEEETKGLEKQDILLLNTRYAELEQRQQVLQEQHNLVFSRYNNNSRTIKQ + LTGTMEKLKQLECKYGIIAKLAKVAKGDNPQRITFERYVLAAYFDEIIIAANYRLTRM + TGSRYLLKRKEEKGKGRAQQGLELEVFDNYTGKARHVKTLSGGEGFKASLALALGLAD + VVQSYSGGISLDTLFVDEGFGSLDPESLDGAIECLTEIQKTGRLVGVISHVTEIKERI + NSVLEVISSKEGSFIKFNI" + gene complement(60279..62507) + /locus_tag="Ccel_0053" + CDS complement(60279..62507) + /locus_tag="Ccel_0053" + /inference="protein motif:TFAM:TIGR01515" + /note="KEGG: cth:Cthe_2191 1,4-alpha-glucan branching + enzyme; + TIGRFAM: 1,4-alpha-glucan branching enzyme; + PFAM: glycoside hydrolase family 13 domain protein; alpha + amylase catalytic region; alpha amylase all-beta; + SMART: alpha amylase catalytic sub domain" + /codon_start=1 + /transl_table=11 + /product="1,4-alpha-glucan branching enzyme" + /protein_id="ACL74441.1" + /db_xref="InterPro:IPR004193" + /db_xref="InterPro:IPR006047" + /db_xref="InterPro:IPR006048" + /db_xref="InterPro:IPR006407" + /db_xref="InterPro:IPR006589" + /translation="MRKIYAETATSIINGECKDPHSYLGMHLLGVEGKNLQTVVRAFQ + PTAKMVELVDVSAGTSFPMKMECGNGMFEIIFPDRCDIFEYQLKITDLSGNSFITHDP + YSFWPVISEFDTHLFNQGNHHRIYEKLGAHVMTHNNVNGTLFAVWAPCAKRVSVVGDF + NQWDGRRHQMRELGSSGIWELFIPLTSEGDLYKYEIMTPDGSLIFKADPYAYYAEKRP + ATASIVMNIDNYSWGDTQWMAQREENDVFNCPMSIYELHPGTWSTSGEPDENGDIYLN + YRVIADRLVPYIKYMGYTHIELLPVAEHPYDGSWGYQVTGYYAVTSRYGKPEDFMYFV + DKCHQNDIGVLLDWVPAHFPKDAHGLARFDGTALYEHEDPRQGEHPEWGTLVFNHGRN + EVRNFLISNAVFWFEKYHIDGLRVDAVASMIYLDYAKKPGQWIPNKYGGNLNLEAADF + LKQLNTTVFGYFKGIIMVAEESSSWPMITKPPYMGGLGFTFKWNMGWMNDFLKYINMD + PIYRKYHHHLITFSLMYAFTENYILVLSHDEVVHGKYSMLSKQPGDYWQKFAGLRATY + GYTYGHPGKKLLFMGGEYGQFIEWNDKKGLDWHLLDYEMHKKLQTYVKDLNTLYRESK + ALYEVDLSYDGFEWIDCNDNDHSVVSFIRKGRDYHDMLIFVCNFTPAVNYNYCIGVPF + DLEYELVMNSNYEKYGGYDPDDSNKIYTAISDSLHGRPFKLCLTIPSFGVLIFKPIFK + DS" + gene complement(62580..63638) + /locus_tag="Ccel_0054" + CDS complement(62580..63638) + /locus_tag="Ccel_0054" + /inference="similar to AA sequence:KEGG:TTE0289" + /note="KEGG: tte:TTE0289 periplasmic sugar-binding + proteins" + /codon_start=1 + /transl_table=11 + /product="periplasmic sugar-binding protein" + /protein_id="ACL74442.1" + /translation="MWIKQLKIFLLLASLITMVLLAGCSYKNPIDKPDKITIGLSMAT + LQEERWHRDIEALRAKAQAKGAEILFRNANNNINDQISQVKSLLSKDIDILVIVPQDA + EKSQQAVQLARNKGIRVICYDRLIKNSNTDFYVSFDNIRVGEYMASLMVSKVPKGNYI + LINGAKTDYNSFMYNKGFKNILGKYLYEGSIKIVDEVWANDWKPEDAFKCVDKALRDG + KKIDAIIAANDSLAGAAIKALSQRRLAGKVPVAGHDADISGCQRVAEGTQLLTVYKPI + DQLAEKAIDVVLGLLNNDYYACNKFINDGESDIPYEMVEPVVVTKDTLVDTVISAGFH + KLEDVYRNVPESKWPRKK" + gene 63997..64281 + /locus_tag="Ccel_0055" + CDS 63997..64281 + /locus_tag="Ccel_0055" + /inference="protein motif:PFAM:PF01250" + /note="PFAM: ribosomal protein S6; + KEGG: cth:Cthe_2187 SSU ribosomal protein S6P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S6" + /protein_id="ACL74443.1" + /db_xref="InterPro:IPR000529" + /translation="MLKNYETIFIINSEVGEENTKALVEKFKTMLETSAQLESMDEWG + KRKLAYEIDDKTEGYYVLANFSSSPDFPAELERMYKITEGILKYIIIKKD" + gene 64293..64721 + /locus_tag="Ccel_0056" + CDS 64293..64721 + /locus_tag="Ccel_0056" + /inference="protein motif:TFAM:TIGR00621" + /note="TIGRFAM: single-strand binding protein; + PFAM: single-strand binding protein/Primosomal replication + protein n; + KEGG: cth:Cthe_2186 single-strand binding protein" + /codon_start=1 + /transl_table=11 + /product="single-strand binding protein" + /protein_id="ACL74444.1" + /db_xref="InterPro:IPR000424" + /db_xref="InterPro:IPR011344" + /translation="MNKVLLMGRLTKDPDLRYTSGNNTAVASFTLAVNRRFAREGQPQ + ADFINIVAWDRSAEFCGKYFTKGMQVAVVGRIQTRTWDDNEGKRHYVTEVVAEETYFA + DSKRNSEAGNSGSTQKTYSETPAASGDGFYPMDEDDELPF" + gene 65010..65303 + /locus_tag="Ccel_0057" + CDS 65010..65303 + /locus_tag="Ccel_0057" + /inference="protein motif:PFAM:PF01084" + /note="PFAM: ribosomal protein S18; + KEGG: cth:Cthe_2185 30S ribosomal protein S18" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S18" + /protein_id="ACL74445.1" + /db_xref="InterPro:IPR001648" + /translation="MPGPKRDNRRNDRDSYDKGEGKGGMRMRRVKKKVCSFCVDKATD + IDYKDVAKIRKYVSERGKILPRRISGNCAKHQRQLTVAVKRARHIALLPYTAE" + gene complement(65420..65758) + /locus_tag="Ccel_0058" + CDS complement(65420..65758) + /locus_tag="Ccel_0058" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ckl:CKL_2928 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL74446.1" + /db_xref="InterPro:IPR001387" + /translation="MSQKDKPTFLVLLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQ + IERGEKSPSVETLIDISKSLDTSISYILNVPDYKMKKELSDLVLLCSEANKEEIYKIT + EIAKIILKRT" + gene 66103..66315 + /locus_tag="Ccel_0059" + CDS 66103..66315 + /locus_tag="Ccel_0059" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74447.1" + /translation="MRRCSRCCLKNLWETKGADEIINKIEKQYSFSSDKLYTRACVYT + LTGKLKLALDYLRKHQRWGKKIQSNV" + gene 66526..66897 + /locus_tag="Ccel_0060" + CDS 66526..66897 + /locus_tag="Ccel_0060" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74448.1" + /translation="MNYRTRWAYLRFTKKVGDNIKIPMIVLDACVGKGAGSKILTEIE + GEVLELLISAEQGAYSINIFDDLINYFCPDISYTDICYSDEIITKEILMEVIKSIQLK + KFVNFKDAFFDKEIKKVFLRK" + gene 67215..67685 + /locus_tag="Ccel_0061" + CDS 67215..67685 + /locus_tag="Ccel_0061" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: cac:CAC3531 IS605/IS200-like transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL74449.1" + /db_xref="InterPro:IPR002686" + /translation="MDSESLAHSKYNCKYHIVFAPKYRRQVIYGKIKADIGQILRKLC + DQKGVEIIEANACPDHIHMLVSIPPKISVSSFMGYLKGKSSLMIFDRHANLKYKYGNR + HFWCKGFYVDTVGKNKNAIAKYIQNQLQNDIASDQMSLIEHIDPFTGEPVKKGK" + gene 68141..69136 + /locus_tag="Ccel_0062" + CDS 68141..69136 + /locus_tag="Ccel_0062" + /inference="protein motif:COG:COG2333" + /note="KEGG: shl:Shal_0525 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hydrolase (metallo-beta-lactamase + superfamily)-like protein" + /protein_id="ACL74450.1" + /translation="MDITVIRAGRGDCIWIRWEDQCVHNIIIDSGPAATKAIFRRLIQ + QEITSKGEAIDLLVLTHIDDDHIRGFLYYLADYYSSTNANTFREVWFNTGICCLSCDH + SPNSAAKLSCKLNNLGIHYSDSVLRGDSISIGDVTLKVICPFAEAVGHVNKIILQQQP + SLHAASINKPLEDILANDCFQMDSSDTNKASIAMVLTYCGKYRIAFLGDAHEKEVREG + LVEFFPGQAMNLVKLSHHGSSHNLSNELIDILNTRQYILSSSRDMDIITLARLYQKVS + STKETTVIYSNYSQLLAKQRLVEAGNKLLKIETLDAKPQLLWKEGDLVCRIRTIR" + gene 69576..70424 + /locus_tag="Ccel_0063" + CDS 69576..70424 + /locus_tag="Ccel_0063" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74451.1" + /translation="MAFYNRDSRISESDPDAELKGFSGGGVFALLQNTIFLCGIYPGV + PSDAVHYRDFNVLSLQAFQETCASNFLPIPDFQPLIPDSLRKHLFVCQSEIDVGHILK + DYLQDVSRCNFSGLICSSCGHCNPCEYGEHFYLCDRFQQQLLKSSALLSHHNDGFDEH + EALKVKKGEDYHEVHIICSDVRPTHVSGLIRAIKQDYLGRNILPENSLILWASKERCK + QSLSNCTRAEYQNIISDIARAYPNPSDFSDVNEAPEQLAIMNIPYILDEMETNSNAFA + DFVNRM" + gene 70435..70953 + /locus_tag="Ccel_0064" + CDS 70435..70953 + /locus_tag="Ccel_0064" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: chu:CHU_0039 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74452.1" + /translation="MEQLVDLESQLNQMFDSAFRIRCYAYSTYGYPVRIICAFPLGNL + EDNWKSLNDAISFKLQAQIHNTVERYNIYLLIFELNISTELRRIIESDRYCCRKIVLP + ESMPENDNTLENLVENRLFYFIEQTVSPDNVQSVQTLINSIDPSGQLLDLIANLRSRI + SDEDVQGVINIL" + gene 70967..73924 + /locus_tag="Ccel_0065" + CDS 70967..73924 + /locus_tag="Ccel_0065" + /inference="protein motif:PFAM:PF02463" + /note="PFAM: SMC domain protein; + KEGG: sun:SUN_0732 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SMC domain protein" + /protein_id="ACL74453.1" + /db_xref="InterPro:IPR003395" + /translation="MYKLSKIELDNFRVFKGHKTIEFLNRTGSPYNFICIYGSNGSGK + TALVDAFEWLATGKLHRIDSDMQVQGKSYEGAILTHIEAYDNDQRANVVAHFIDSNRD + TLQYKRNIRIRRDSINDYLSGNCTGSGLSAKQILPYSRVAGFVSAEKPEQRFTSWAGF + INPEDQSFSLLTNTYRLRSKIKSALEKTERELGEVTTALVNCNLDAGLVSVLNSDILS + YNELYTEILSEEKPIEPLHQNDLGIYQIPDLSSIKAIQLRVSGELERFRSREPIFRQL + IDNYPVYHKAEDDLVNIYKVEKIYQERIKKIHQKKEFDTLSRNVGSLYDALTHLLKEC + TDDINEQIKVSMAQKDKLEKERKTWRQQLEQIEKDTVDLKKYDPNPIYLNAVEQQKVL + QNGLASLAQISLYIESHKFEDASTLTTTLSQEFRNEVLEKIHELTLQNDLIQSTIKQR + TQISLQIRESESSCNEVIASIEKIRAQITSEQLNACPICKTEFSTTESLLARIEQEFC + SKDLAEARAEYNTKDLQLRNFRESYKSMVQSWNIIKQNTSKVLEVKLTDLNKEIEEIS + VKVEHFNRSIFLLEEQRQLLIAQLNSIIDFTGELTLDVFDLLIKNTYQRLHESHVQKE + SMLSQICILSERLHAVMLCLPGETKDAQKQLEISLHLLPIQSERINTLKVSTQEYISK + VDQLVSMHETLLDFCEVNSDELQTCNTKVSDLVQQQSTLKLIINDYQNLVFKAHLDQQ + TAIEQVKQQFFNEQNIKDILETKISVSLINILSHETELLNYQNQYKKLIKQKNELNKK + VEVVKRAFEKTDNLYNSMCSIQQGVVDQAFAGEMVNEIYRLLEPNKDFPRLSFKIDFN + STERPELYINAHERDMSNSIVLPELIFSTAQLNTISLCIFLSNALSNSRLDSQTLILD + DPISSFDDINTVAFSDLLRILCVQNDWQIIFTTHDEKLFRLLQVKLSPEYHNSLFLQF + KDKGQLVDIRHLI" + gene 74147..77449 + /locus_tag="Ccel_0066" + CDS 74147..77449 + /locus_tag="Ccel_0066" + /inference="protein motif:PFAM:PF04851" + /note="PFAM: helicase domain protein; type III restriction + protein res subunit; DEAD/DEAH box helicase domain + protein; + SMART: DEAD-like helicases; + KEGG: nwi:Nwi_2131 DEAD/DEAH box helicase" + /codon_start=1 + /transl_table=11 + /product="type III restriction protein res subunit" + /protein_id="ACL74454.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MMKLFPDWQGKITLPLSPLRREVVGGNAVCQQAFRGGDTIAEAE + ALDNEGYYLVKTRLLFPFNELLLRRKGTRHIETNYLVLLAPDLKRIYELGPDTRLEWD + DLGLLTRSFRNPEQILESWKGKFSFREEDNVTGAKGLRPPQIGALHAIAAHFAVGKNF + EPATVVLPTGTGKTETMLSMQVYKRLLRTLVIVPSDALRTQIYKKFLTLGVLPDLEVV + PSETIGPNVTRLVTGIRSKEEALAIIEKSNIIITLPKTLSASDPEALRILTEYCTDLI + VDEAHHIPASQWSLVCQMFSDKRITQFTATPFRRDNKRIDGKIIFNYKLGDAQAADYY + RPINLKTIEEFGDKEQRDLCIAEEALTALRRDRNELHLDHILMARCESKERAVNVFEL + YQKLAPEMLPQLVYSGPGRIHKNREALEKLIQRKKNAAQIVVCVDMLGEGFDLPNLKV + AALHDTHKSLAITLQFIGRFTRKGNWEQIGEATVVVNIADSETETKLEALYAEGADWD + SLIKRLSEDRIDQEIRLQKIVHNLRESGDLHTFLSLWNLRPSLSMQVFKTQCQNWSPE + NYFNVFSKDSKSWHAISKDNDILIAVVHRKARVRWGNYQNLFDRQYHLLMARWDKENG + ALFIHASDYEELKSTTLAKEITNDKTVLLQGPVIFNILNNVELPLVKNLGSSRIGAIS + FTSYFGPNVTEGLALIERAESTLNNIACVGYENGERVLWGGTQRRGKIWQQSSGTISQ + WIDWTAHTWEKVSTQDNIDVANITNEFLRPHKLSQPYNQYPISVQWGEQVQASFSNNQ + SIVFDTTEVPLYLVDLQISEVRDNGEIIIRLSSDTNSSEYSFQINDDSESGYYYKKIS + GPDVYFAKGTNIKTEVCEYFVVDPVIVRYVDGTYSYNCYHIPIPLKAGEYPRERIEVW + DWASIPLNKESIGKTGNKNTIQYQSFLTISDKYDVVFNDDGKGEAGDLVCLKDIDEST + IKLCLVHCKGALGGQISNDIGNFYTLCGQAQKSITVKHMGMTRLYNDLKRRHEIWARA + GYSRFLKGDMKYLSYFKEKSRRSKLQFEVIIVQPGGSKAALSTDILKLLGTTELFLKT + TTQGNLRVVVSP" + gene 77670..78827 + /locus_tag="Ccel_0067" + CDS 77670..78827 + /locus_tag="Ccel_0067" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: cbl:CLK_1309 site-specific recombinase" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL74455.1" + /db_xref="InterPro:IPR002104" + /translation="MHLEKAIYKNGKKKYLIVDENFVIHEEALFFSNFLYSEGYAINT + IEGYLRDLKIFLEYLESKDILLGEVRPIHVSQFMDYLRGHELEEIINLSESERRKATT + VKRILSSLSTFYKSLDAADAKSNSPFTYLDGIKPQDMYKTFLSYTRGSKIKKRNVGIR + QKRTDGETSQVVRKYSNRTGKRLFTDEVDIFYKGLTGTRNKLIFDILYETGMRIGELL + SLKVNDYSEVDPWNLFGYIYIIYDEENDDQNRQQKTGSRTLVTTMKLLGRIEEYITEI + RPYIKEQEYIFVAESGKTKGQPLSRSLIEKVFSECTEKTGIKCTPHMLRHTHLTELSE + FGFDEIFLKGRAGHRSIHTTEKYTHPSLEAQVRAYERYMKARTSKWGTSKE" + gene 78824..80209 + /locus_tag="Ccel_0068" + CDS 78824..80209 + /locus_tag="Ccel_0068" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: amt:Amet_1594 phage integrase family protein" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL74456.1" + /db_xref="InterPro:IPR002104" + /translation="MIVNYDDDIWRIPATNNYSITDYNFEFGRFKSPTLKMQVKDYMY + AHLKRDVVEHSTLHRYCYSLQHFANFIESNEIWLSYFSELTPLMIDQFILYLKRELKS + PKTMVVAFSALKSVVRFGQFLQSEKYPPMQIFPDSPCRIFGIEDTLTTKCISNFVMIQ + INQALKKEQDILLKTCLLIAKETGLRLSEILLLEEGCVMEDFLGSPILFTFSPKIDDE + RAVVISTELLKVVNELNRYTKEFRKKNNTLLLFVRKAKKKCRKEIVQYNQSIARSELR + DFKIRNKIVDESGQIADFTFHSFRHTLGTDMINNGMSPIDVRSQLGHVSMHSTGIYAR + VSNTSLQNEYAKLGFIGISEKTLSDVYSISEKVIAEEKKIQGALPDGICTKVFEGETH + CSKFNMCLFCDKYRTFIKDLPTHKEHLERLRKDRIQYMSEMSIGNQEFLQRIEDALVT + IIERLETLACT" + gene 80200..81753 + /locus_tag="Ccel_0069" + CDS 80200..81753 + /locus_tag="Ccel_0069" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: amt:Amet_1595 phage integrase family protein" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL74457.1" + /db_xref="InterPro:IPR002104" + /translation="MYLVDFIGYRPEYFEQGYTHFKIGNSFFEDDTWNFIGLTPEQAG + KPDCRFLIKFGEIKKPRLRFTTKQIVLSWCLTLEILSVQRKLVGIKKFIHFIEHEYPE + IDAYSKVNKGIVCSYITWMLGVKKNGKLLSASDIKFGSLGLKDLFIEGMRKGWDVPQN + CGWIALLHEEMVLKSPRVRKFSREKTTKKAYAKETIETIIKCALQDDNIFVRAAVIIQ + TQVGLRISELLSIKDGCINYVNGIPQLTYITTKTKKQPMSVEKPINSLVVQVITELEE + YTRAIRKKAGLESLFVHRIRYDTKTVIIAYHTFGKNFLRPFVKRWDIKEDGEPLELTS + HYFRHFFAQGAWKGGMPVQFISKMLNHDSLVMTETYTYSLQEQMNEKFIEIMSNPENL + AGVGIGRIKERLRSENPFQGKTEREIKIIMEAMRIRILANGICMHHPARRESCPISDG + ESCMHCPNFVSPRVCIPVHKLRVERITDEIKRAEKQGNTIWLSKLMQEKEYIEQNFIR + KFECREVVQ" + gene 81750..82196 + /locus_tag="Ccel_0070" + CDS 81750..82196 + /locus_tag="Ccel_0070" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cyt:cce_4564 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74458.1" + /translation="MSKDYANVDGLLKYHVERNKETINKVNKAISDFKKGKKKITVKA + VAKKANVSVATIYNNPALKERIDQLKDIQRGGKDIDAGSTIKSIKKVKMDEMRDTINR + LRTNLEAERQKNGLLLGELEKKTSENIELKARVAQYRNYIESAKKQ" + gene 82681..84462 + /locus_tag="Ccel_0071" + CDS 82681..84462 + /locus_tag="Ccel_0071" + /inference="protein motif:PFAM:PF02810" + /note="PFAM: SEC-C motif domain protein; + KEGG: cth:Cthe_1113 SecC motif-containing protein" + /codon_start=1 + /transl_table=11 + /product="SEC-C motif domain protein" + /protein_id="ACL74459.1" + /db_xref="InterPro:IPR004027" + /translation="MEEKIKLLKEKLQSFGTRDLLGMIGVQFLTFGNNAADVTEQSDI + FKKTDLTSPHKQYTYLAGLLMSTDDHSNGVTNDNFRKYKELEEDIESITLEYTKTFLD + FGDTPDNPDFDIVKRNLVSMQAFTSYFDMDILRYKEQTENLIKGLYIPFNKELEQLTS + LNVNDYLTFFHMIEDSFSNALDDGKAATQRLQTFLNSFDPTPGNIENEFQRLISGDNG + RIGREIQNAMDVLNTISKDKLIHTFGEAKGKKLLEIFALERKERNFLFYNRPNPFAEK + PLCWLDNGQTLYIVHPTFVLSAIFNFITNTLENPKNSFAEKYKREKGNITENLFHQQL + VKVFGDSATYHTSVCEERGTKEHDILIEYKDYIFIAEVKASKVREPFFNPQKAFPRIK + DHFNSDTGIGGAYQQAIVLKKLIESSDVLTLYEEKTKPFALTHCSSKTILPLVLTLNQ + FGSIAVNTTLLLDKEDDQPYPWVCNLHDLENIIEINTYLKKDTRDFIEYILWRIKNHK + VTLSSDELDVIEGYYFDKNARIAKDTNMFFLPTGPSLIDKIYFEKKCIPYHFPPLDSM + PLKSQKVGRNDPCSCGSGKKYKKCCGA" + gene 84739..87255 + /locus_tag="Ccel_0072" + CDS 84739..87255 + /locus_tag="Ccel_0072" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: abm:ABSDF3536 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74460.1" + /translation="MIPIELLKEISENKAVLFLGAGASKQSGGPIGCELTEFIANELN + IQKIQNSDLAIFTQYLIKSNYASRKEIELAIKNRLQSLPPSNGYKAMTVIPWKEIYSV + NFDDLVEQSYKSYRGLYDCKIMTEDNLQDEIESNQIPLYKMHGSIGDVYSPQKPLVIT + YDDLINPNSYKEQLIKRLTNRLLETVIFIGYSFSDGVIEEILKSFKRSGNFDGIKRKY + AVLPTPSDEDKLKYQSIYNIEIIDMKSDDFFLDVKNHFDQEYRAKLRAFSKSLSIFCG + NSKVTFDPQIKSLIDNYFEYYDENKNYPNDANCFYRCGAPHWGNIKMNLDINRNVLID + GENYTYTLINTTNIPDIIFSKLQDNENKITIYKITGPIAVGKSTLCYRIAYELYNKGV + LALFSNTSESIRPGLLTEIHKALKRPFVVIVDDAVNYDRKISMMIKECEKSGLEVSFI + IAVRENDWECLLDYQFKRRLNNKSITIRLEDKLDKQQSTELAEKLFINNILIETVEQT + KQDLIKKFVQSKNLVASLMTSIENTDFEKKLAHDYDRYSPETQNAYGIISLVNRLCLP + FKWELLQRSLYRSYCIEWDVFTEKVIKAEAKGNIIQYGYGANYYFSCRHNLIAQLISD + IHYKGDRFKEIKDLKNIILSVNKFSHEEIFIGKLVQYIVSRGELDLGYSYKQIIEILD + CAILNISNPYFLLHVKGQYIMESQKDFDGALKCFNKCIDDEKNLQYALHSAAMAHFNI + ASSLESDSGVRHIEIRKTKDLLIKGSIHFPDNPFFYKTMLQLLDFDSCNSIHESNYLL + AKSTMEKYKKYCSLDKDPEVFDLFEKLKMKQQQSLNQPCG" + gene complement(87609..88196) + /locus_tag="Ccel_0073" + CDS complement(87609..88196) + /locus_tag="Ccel_0073" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74461.1" + /translation="MTFYSCIKEILNWLYTLSGIAVTLTIFIGIKQVRHMQKDSADNL + YRQSIDKAVEYITRFSEITLPALKDYQAKIANKNPKTWSKKSEYSFEVSDEERELLYK + IDIIEIGKLGIFKIINELEILSIGVNTGMINDETVFGCIGKLFCEAVESTYDAICYFR + VVENAGLFNNIEKLYKEWRPKFEDIISTITVDIGV" + gene 88905..89834 + /locus_tag="Ccel_0074" + CDS 88905..89834 + /locus_tag="Ccel_0074" + /inference="similar to AA sequence:KEGG:HCH_04427" + /note="KEGG: hch:HCH_04427 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74462.1" + /translation="MPNELIPEIESILRSKFYDIVGKYYEIPKILYHYTNITGLVGII + GSQKLWATDRRFLNDSSEISYGLELVKEILSEKIENEKSEVVSEFMRRSLNIDIVINI + YEIYISCFCEEGNLLSQWRGYGDKGDGYSIGIEPEKIKNRNYQIGKVIYSREEQNFII + NSILDYHCKLISELACERGVKANRDLITSFTLNFSTLVSQIICLFKHPTFAEEKEWRY + VYLIPKYTKPSESIFFSSLDTVKFRNNSEYLIPYIEIDLVNEENEFKIPIKRVISGPS + KQPELKKVSLEQFMEKKECFKIEIIDSNIPFRN" + gene 90250..90540 + /locus_tag="Ccel_0075" + CDS 90250..90540 + /locus_tag="Ccel_0075" + /inference="protein motif:PFAM:PF01084" + /note="PFAM: ribosomal protein S18; + KEGG: cth:Cthe_2185 30S ribosomal protein S18" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S18" + /protein_id="ACL74463.1" + /db_xref="InterPro:IPR001648" + /translation="MPGPKRDNRRNDRDYDKGEGKGGMRMRRVKKKVCSFCVDKATDI + DYKDIAKIRKYVSERGKILPRRISGNCAKHQRQLTVAVKRARHIALLPYTAE" + gene complement(90746..91423) + /locus_tag="Ccel_0076" + CDS complement(90746..91423) + /locus_tag="Ccel_0076" + /inference="similar to AA sequence:KEGG:Gmet_2951" + /note="KEGG: gme:Gmet_2951 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74464.1" + /translation="MSFNGFSGEALKFLFENRMNNSKEWYDSHKPDYKKYVYVPFVEL + IKELTPAMLEIDQQIITIPSKLISRVRRDTRFTKDKTLYRDNAWIVFLRDKSIMSTSP + SFWFGITQKGSSYGVGFYGVETSSMANMREMIIKRHPLFMDALACYESQNKFVIGGDM + YKRSKFPDQPENLKLWLDRKNIYFESVQEGFNLAFSKELPDVLRQDFLRLKPIYDFLS + MLAAYGG" + gene 91604..91918 + /locus_tag="Ccel_0077" + CDS 91604..91918 + /locus_tag="Ccel_0077" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fno:Fnod_0976 glycine cleavage system + aminomethyltransferase T" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74465.1" + /translation="MDREQDQIMWKYLTTADNEFEFNIIKGKLEENGIVCVGKGKDLG + LIDSTLLNVILGPCVPIEIKVPEDRYQEALEIINTEVSEEELEKQALDSGKNEQENED + NS" + gene 92021..92863 + /locus_tag="Ccel_0078" + CDS 92021..92863 + /locus_tag="Ccel_0078" + /inference="protein motif:PFAM:PF00800" + /note="PFAM: prephenate dehydratase; amino acid-binding + ACT domain protein; + KEGG: cth:Cthe_2260 prephenate dehydratase" + /codon_start=1 + /transl_table=11 + /product="prephenate dehydratase" + /protein_id="ACL74466.1" + /db_xref="InterPro:IPR001086" + /db_xref="InterPro:IPR002912" + /translation="MVKSIGYLGPFGTFSHEAAGLYAKGQSCTLLEFGSIQDVLYAVK + DNKIIEAIVPIENSLEGAVNVTLDVLAKEEGLYIKGEIILPVSLNLVVRKGTLPEDIT + TIMSHPQPLGQARDFLNKYYPKVVQVEENSTSQAAQRVSEGDGTYAAITSRTAAKING + LEVLAGDIQDVVNNHTRFVVISKEFPKRTGCDKTSIVFSTDNKPGSLYRILDIFSLWD + INMTRIESRPSKNALGQYIFFIDIDGHIEDQDVFDALTMIKRKTSFYRFIGSYPVYNG + KNGE" + gene 92956..93300 + /locus_tag="Ccel_0079" + CDS 92956..93300 + /locus_tag="Ccel_0079" + /inference="similar to AA sequence:KEGG:Cthe_2259" + /note="KEGG: cth:Cthe_2259 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74467.1" + /translation="MAQFDNQIDITRNVKIIEWLKSELLTDVANLFKALVNGFREEVS + ETFADTLANIILICYLLGKRFGINYRTIEMKIDSKIRLGLVENHDVEKYYGDLSALAK + HLNGSRSGRQGA" + gene 93316..95319 + /locus_tag="Ccel_0080" + CDS 93316..95319 + /locus_tag="Ccel_0080" + /inference="protein motif:PFAM:PF01368" + /note="PFAM: phosphoesterase RecJ domain protein; + phosphoesterase DHHA1; + KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein" + /codon_start=1 + /transl_table=11 + /product="phosphoesterase RecJ domain protein" + /protein_id="ACL74468.1" + /db_xref="InterPro:IPR001667" + /db_xref="InterPro:IPR003156" + /translation="MDSRKLSRIFIPKAGFYLWVIFFLIAVITFLKPLVSIPGYILFV + FLVIYNYKSTHIRNREITKYIETLTFNIDCATKDTLLNFPMPLVLAELDGTTVWYNSS + FKGIFQNDTVQQETVAELVTDLKPQMTEGDSINISSEVTINDRHYSVLGNLVKLDDSN + NEESIIVMFYLVDNTELINEKQRFEDNKNTVGLIVIDNYDDLMQSMEDSVRQQLLAEI + DKKVTNWISHTGGVLKKFERDKYLCIFAFKYLHELEEKRFEILETVKEINLGNKIPVT + LSIGLGINAPTIVENLQNSYACIDIALGRGGDHVVIKDGDNFRFFGGRTRELEKRTRV + KARVIAYALRGLIDQAPSVLIMGHENADIDCLGAALGIYRIVKNRDKRVNIVLNHSNA + NIDAILNKMAKEPEYNNVFVGTNEALDLITKKTLLIVVDTHKPGFTEAPELLKMTDQV + VIIDHHRRGADFIQDAVLSYQETYASSTCELVTELLQYVEDRIRLTNIETEALYAGIV + VDTKNFIFKTGVRTFEAASYLRRQGADTVSVKQLFQNDLKTYITISNIVKDAEVVYDN + IAISICPSNVKGAQLIAAQAADQLLSLAGLVAAFVLSYHDGEVVISGRSLGDINVQMI + LEKLGGGGHLTVAGAQIEGVSIQDAKKMLKDAIYEYIDSLAKE" + gene 95349..95795 + /locus_tag="Ccel_0081" + CDS 95349..95795 + /locus_tag="Ccel_0081" + /inference="protein motif:PFAM:PF01281" + /note="PFAM: ribosomal protein L9; + KEGG: cth:Cthe_2257 50S ribosomal protein L9P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L9" + /protein_id="ACL74469.1" + /db_xref="InterPro:IPR000244" + /translation="MKVILKQDVKGLGKKEQMVEASDGYARNFLLPKGLAVEATSANV + NIMKTKKEAEAQKKEREVAQAKELAKKIKDITVTLKVKAGENGKLFGSITSKDVAEAL + KTQQKLDIDKKKLVMPDSVKSIGTFDVEVKLYPEINSKFTVKIENL" + gene 95838..97178 + /locus_tag="Ccel_0082" + CDS 95838..97178 + /locus_tag="Ccel_0082" + /inference="protein motif:TFAM:TIGR00665" + /note="TIGRFAM: replicative DNA helicase; + PFAM: DnaB domain protein helicase domain protein; + KEGG: cth:Cthe_2256 primary replicative DNA helicase" + /codon_start=1 + /transl_table=11 + /product="replicative DNA helicase" + /protein_id="ACL74470.1" + /db_xref="InterPro:IPR007692" + /db_xref="InterPro:IPR007693" + /db_xref="InterPro:IPR007694" + /translation="MDIGTLGRIPPQSLEAEQSVLGSMLIDKEVVPVVMEVLKSEDFY + RPDHKEIYDVIIELFDRAQPIDLITVSERLKLHGKLELVGGLEYLTNIATEVPTTANV + KHYAKIVEEKALLRKLIKASSDIVDLGYNASEEVTYILDRAEQNIFDILQKRSSQGFV + PIKDVLVDTFNKLEELYNSSGNITGIPTGFTDLDFKTSGLHNSDLILIAARPAMGKTA + FALNLAQNAAVHSNVPVAVFSLEMSREQLVNRMLCSEAMVDSNRMKTGKLEDNDWQKV + AKALGPLSEAPIFIDDTPGVSITEIRAKCRRLKLEHNLGLVIIDYLQLMQGSRSKSEN + RQQEISEISRSLKILAKEINVPVITLSQLSRAPEARTDHRPILSDLRESGAIEQDADI + VMFLYRDDYYNPETEKKNIAEVILAKHRNGSTGTVELVWLGQYTKFANLEKFRQ" + gene 97179..98624 + /locus_tag="Ccel_0083" + CDS 97179..98624 + /locus_tag="Ccel_0083" + /inference="protein motif:TFAM:TIGR02432" + /note="TIGRFAM: tRNA(Ile)-lysidine synthetase; + PFAM: PP-loop domain protein; + KEGG: cth:Cthe_2255 tRNA(Ile)-lysidine synthetase" + /codon_start=1 + /transl_table=11 + /product="tRNA(Ile)-lysidine synthetase" + /protein_id="ACL74471.1" + /db_xref="InterPro:IPR011063" + /db_xref="InterPro:IPR012795" + /db_xref="InterPro:IPR012796" + /translation="MQIKEMVMLKQLVLETIKNKELINYGEGIVVGISGGYDSVCLLH + ILYSISNELGIKIYPVHVNHMLRGDEALRDENFVKSFCSSLGLEVYIKHIDIAKKAKT + EKISLEEAGRNARYEVFSLVAGERGASKIAVAHSRNDQAETILMRICRGTGLEGLRGM + EYKRDNIIRPLLDADRSQIEEYVNGIGVEAVTDSSNLHTDYFRNRIRIDVIPAINIAS + GSDITENLLRLSKIVVAEDDYLRYNSELYYQKSVLSERKMYTELDLNVLDEIHQSVRL + RVLRIAIEKTCGTLNGWGYIHLDKLNNLIENGRTGAQIDLPHGVAAVKSYGSLILKEQ + GKEHQEQFEKKLIIPGETEIQRFGLIVKTEIYKFETNKSCRQFINNNEKVNTKFIDLE + KVTAMGENLQIRNRRDGDIFKPLKSNGTKKLKEYFIDNKIPRQVRSTIPLIALNKDIV + WVIGNKISDNYKVTDNTKMVLKITFIQKKKN" + gene 98660..99199 + /locus_tag="Ccel_0084" + CDS 98660..99199 + /locus_tag="Ccel_0084" + /inference="protein motif:TFAM:TIGR01203" + /note="TIGRFAM: hypoxanthine phosphoribosyltransferase; + PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_2254 hypoxanthine + phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="hypoxanthine phosphoribosyltransferase" + /protein_id="ACL74472.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR005904" + /translation="MDVVERILVSKEQLDKQVEELGARISRDYEGQELVIIGVLKGGF + IFLADLARKITIPVDLDFMSVSSYGNSSKSSGIVKIIKDVDTDITGKHVLIVEDIIDT + GLTLNHLVELLKTRGPLSVKVCAALDKPSRRKVDLKVDYKGIEIPDEFVIGYGLDYAG + KYRNIQEVCVLKREVYTKK" + gene 99447..101306 + /locus_tag="Ccel_0085" + CDS 99447..101306 + /locus_tag="Ccel_0085" + /inference="protein motif:TFAM:TIGR01241" + /note="KEGG: cth:Cthe_2253 ATP-dependent metalloprotease + FtsH; + TIGRFAM: ATP-dependent metalloprotease FtsH; + PFAM: peptidase M41; AAA ATPase central domain protein; + peptidase M41 FtsH extracellular; ATPase associated with + various cellular activities AAA_5; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent metalloprotease FtsH" + /protein_id="ACL74473.1" + /db_xref="InterPro:IPR000642" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR003960" + /db_xref="InterPro:IPR005936" + /db_xref="InterPro:IPR011546" + /db_xref="InterPro:IPR011704" + /translation="MKYFKGISFYIIIFILILVIITFFTATDNPPKMSYSELLTEMKA + GNVKSIGLQTDTATIELKKPKENNRTKFVVIVPPDVTSASERFTAALDNKLIEDFHVT + QPPQPPWWVSMLPTVGLVIILILIWFFFIQQSQGGGGGNRVMSFGKSRAKMTVDDKKK + ITFENVAGADEEKEELAEIVEFLKAPKKFVELGARIPKGVLLVGPPGTGKTLLAKAVS + GEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRHRGAGL + GGGHDEREQTLNQLLVEMDGFGINEGVIILAATNRPDILDPALLRPGRFDRRVVVGLP + DIKGREQILKVHSRGKPLADDVRLDDLARITPGFTGADIENLLNEAALLTARANKKKI + GNEEIKEAAFKVMMGPEKKSRVMSEHDKKVTAYHEAGHAIAIKLVSSSQKVDRVSIIP + AGMAGGYTASRPQEDKSYHTRSQLIEEIIIALGGRAAEEITMDEVSTGASSDLKKVNQ + IARNMVTKYGMSEKLGNMIFGNDNDEVFIGRDLAQARNYSDELAAIIDNEVKSIIDNA + YQKTVSLLRENIVRLNKLAEVLLEKEKVEGAEFEEIFENAVLEGSSQTPQLEG" + gene 101392..101784 + /locus_tag="Ccel_0086" + CDS 101392..101784 + /locus_tag="Ccel_0086" + /inference="similar to AA sequence:KEGG:Dred_0128" + /note="KEGG: drm:Dred_0128 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74474.1" + /translation="MELKVGLTGNAEVLVSESNTAKKMGSGNLDVFATPAMIALMEKA + ASMAVQPYIGESSSTVGTMIDVKHIAATPIGMNVAARAELIEIDGKKLIFSVEAFDGK + DKIGEGRHERFIINTQKFITKVDSKLEG" + gene 102061..103251 + /locus_tag="Ccel_0087" + CDS 102061..103251 + /locus_tag="Ccel_0087" + /inference="protein motif:PFAM:PF00438" + /note="PFAM: S-adenosylmethionine synthetase; + KEGG: cth:Cthe_2251 methionine adenosyltransferase" + /codon_start=1 + /transl_table=11 + /product="S-adenosylmethionine synthetase" + /protein_id="ACL74475.1" + /db_xref="InterPro:IPR002133" + /translation="MTKRLFTSESVTEGHPDKICDQISDAVLDAIYEKDPQARVACET + AVTTGMVMVMGEITTNCYVDIPKVVRNTIREIGYDRAKYGFDCDTCAVMTSIDEQSSD + IAMGVDKALEAKVGEMSEEQVQAIGAGDQGMMFGFACDETPELMPMPIILAHKLTMKL + SEVRKNGKVKYLRPDGKSQVTVEYDGDKPVRVDTVVISTQHGADVSHDTIEKDIMEHV + IIPVIPRELLDEGTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSG + KDPTKVDRSAAYAARYVAKNIVASGIARKCEVQLAYAIGVAKPVSVLVDTFGTAVIPE + EKISELVNKHFDLRPAAIINKLNLRRPIYRKTAAYGHFGRDDAEFSWEKTDVADALRK + EAGL" + gene 103403..103741 + /locus_tag="Ccel_0088" + CDS 103403..103741 + /locus_tag="Ccel_0088" + /inference="similar to AA sequence:KEGG:Cthe_2250" + /note="KEGG: cth:Cthe_2250 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74476.1" + /translation="MTDFSYIILGLFAIYGIISLFKSIFRLLENKKYYVEKANLVLLV + NDQEENIEKIVREAMMSKFVRNIAINGSFIVIDMKSKDQTYKILKRLEKQYSLVEVCS + FDERESIFYK" + gene 103985..106426 + /locus_tag="Ccel_0089" + CDS 103985..106426 + /locus_tag="Ccel_0089" + /inference="similar to AA sequence:KEGG:TTE0489" + /note="KEGG: tte:TTE0489 exonuclease V subunit alpha" + /codon_start=1 + /transl_table=11 + /product="exonuclease V subunit alpha" + /protein_id="ACL74477.1" + /translation="MAISQFQQQRWSFESYPVGTNLNIIGRFDFKIYENSENGYKIYT + FDIEKIIDDDGFEHEVADQISVTGYYEVNEHCAVLPSKIRGSVAAYKGEKQLKAETVE + FIEPATDEGIISFLSCGIIKGVGEKTARNIVSGYKSGSNYVEGFGSNTLEVIKNEPLL + LTKIRGISPDKARVIHDSYMENMEYQNVMIFFQRFGVSSAKAMKIYNNFKGTSIAIAE + QNPYMFADIRGFGFKSCDEIARKLGIDPHSVFRLEAALKSVLQTAEADGNCYLLKAKL + LEMTAKALSNPDVTVTTDELEDAYNRMLKSGSLVNITFSEDQQSFEAVYTKEMYKIEY + ETALAIKEIARCQPDVPMFSVDKLIEEFEAMRGFNLESMQKEAVKAVFNTNMLILTGS + AGSGKTTTVECMIYVLQRYFEKQEEMSFMLAAPTGKAAKRLTEITGFEAMTLHRLLQF + SYENKGFFYRQGNELPYDLIVVDESSMLSIDLAHALFTAISPGTTVVLIGDTQQIPSV + GAGNVLDDMIKSGVIPTVKLNVIKRQEDGSGIIFNANRIINGEMPEIINANKDFFIVE + EDDKNRVIKRTLEALNRLMTGYNYTIDDVQVICPQKTSELGTYEMNKAIQEMVNPAAA + GKAEVKRGNSVFRQGDKVIHLNNNYEATHYHKDAKTGRYIADEGSGVFNGDIGRIIEI + SKIGEIDQESEDGEAAGDNNTEEKVAVQYDEFIIIYQINELEEIDLAYSLTVHKMQGS + QCEAAIFLCHLRNYIMLNRNLGYTAVTRAKRMACIIGQRKAISVMVQNVKVTQRNTML + ADLLSLKMIDPNTTS" + gene 106584..107246 + /locus_tag="Ccel_0090" + CDS 106584..107246 + /locus_tag="Ccel_0090" + /inference="protein motif:PFAM:PF00156" + /note="PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_2248 phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosyltransferase" + /protein_id="ACL74478.1" + /db_xref="InterPro:IPR000836" + /translation="MIEYFFPPRCALCNAILKAGVAIYICEKCAGEIGYYKNSVTPLN + LPVGIQNYCDGILCVGRYSDSLKEALRRFKFSNKPSYYRTFGRLLALKVENTEQKVRF + DIIVPVPLYKSKEKTRGYNQAELMAGQVSKILNVPCEKRLLNKTFETKSQSILKKNER + LLNLQDAFVAINQRMIVNKNILLIDDILTTGSTVNQCCKALKEAGAGKVIAGVVATTR + NY" + gene 107296..107709 + /locus_tag="Ccel_0091" + CDS 107296..107709 + /locus_tag="Ccel_0091" + /inference="similar to AA sequence:KEGG:Cthe_2247" + /note="KEGG: cth:Cthe_2247 regulatory protein, MerR" + /codon_start=1 + /transl_table=11 + /product="regulatory protein, MerR" + /protein_id="ACL74479.1" + /translation="MPDLRNCRRCGRMYNFIGGAPICQDCKNADEEVFKKVKDYLYDN + PGATLSQVAMELDVSVEKIKMFLKEGRLEITDESNIILECERCGKSIKTGRFCRECQN + EVSVDLEKTTKTIHLDNSDQNRSNGIGMRYLNKKL" + gene 107897..108184 + /locus_tag="Ccel_0092" + CDS 107897..108184 + /locus_tag="Ccel_0092" + /inference="protein motif:PFAM:PF04316" + /note="PFAM: Anti-sigma-28 factor FlgM family protein; + KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM" + /codon_start=1 + /transl_table=11 + /product="Anti-sigma-28 factor FlgM family protein" + /protein_id="ACL74480.1" + /db_xref="InterPro:IPR007412" + /translation="MKISGDVYNVSKVYNTQNHIGAVNQVNSVKSKKDVISISDNAKD + HQLVFKALKEVPDIRQNKIDEFKEVYRSGTYNVSGQEIVEKLGKAVIDKKV" + gene 108231..108731 + /locus_tag="Ccel_0093" + CDS 108231..108731 + /locus_tag="Ccel_0093" + /inference="protein motif:PFAM:PF05130" + /note="PFAM: FlgN family protein; + KEGG: cth:Cthe_2245 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="FlgN family protein" + /protein_id="ACL74481.1" + /db_xref="InterPro:IPR007809" + /translation="MDTGLIKELTDILNKENDIYETFLKLSNSKTDLITNGNVSELES + IVKIEQSLIIKIAKLEDQREKIVESLSSVLGRKPEEVTISELSSCLGEKEAMELKACQ + EKILKSINGLKSNNELNSKLIKNSLEYIDFSINMMTTVGTVTNSYGSSGNADEGKKRN + LFDVKL" + gene 108765..110891 + /locus_tag="Ccel_0094" + CDS 108765..110891 + /locus_tag="Ccel_0094" + /inference="protein motif:TFAM:TIGR02492" + /note="TIGRFAM: flagellar hook-associated protein FlgK; + PFAM: von Willebrand factor type A; protein of unknown + function DUF1078 domain protein; + KEGG: cth:Cthe_2244 flagellar hook-associated protein + FlgK" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-associated protein FlgK" + /protein_id="ACL74482.1" + /db_xref="InterPro:IPR002035" + /db_xref="InterPro:IPR002371" + /db_xref="InterPro:IPR010930" + /translation="MAVGFSSYEIARSGLKVSERGLFVTGHNLSNVHTPGFTRQQAII + ETNPYITQYGKNGKLFQYGLGADIQETRQIRHTFLDIVYRQENTIQGYWDTRSKAFQD + VEAILNDPMGDGLQGVMNKFWDSWQELSKEPESLTTRAMVRQRGQELVYYYNHIGNQL + DKLQNDLNSEIQVRINEVNNLTSQIAKLNTQIAAQEINGDKANDYRDQRNLLLDRLSI + LCDAEVNEMQDGQMDVTLGGYYIVTRGQSKNLYVQANAEDGEFFYPKLEGTNIKVNVK + SGILKGLMEARGEVPGIKGSTENGTPNYKADITFAIDVSDGNNFDNLRDSLSSYISEL + KQSGLDYNIRIITMGATSSVHENIYDKSNIDSMLADITANNLLEADATVNDGSFKGLI + NELTALNNAPNGFREDAKRYTYVFTNKSINGDSVAADAFIGDAANYVNSLKGMGMKVS + VVTDPAYNTNGKPDAASNPEAGWSIITLGTGGSLADINSDLAGYTSMLKDWNDSLVQT + VKDALGNIPPSLNIVSDIKIKLNAMLNRMVNEINSLQMSGMTLDGKPGVAFFEAMDNN + YPIEMGNLKLSNALLSDSGLNNITASKTAAKGDNTVAKQIANLRDVDILVNSTGRVSI + DEYYRNLILELGNGGMEAERIATSQATVVNAVDAQRNAISGVSMDEEMSNMMKYKFAY + DASSRVLNIMDSMMETIITSLGKVGR" + gene 110923..112536 + /locus_tag="Ccel_0095" + CDS 110923..112536 + /locus_tag="Ccel_0095" + /inference="protein motif:TFAM:TIGR02492" + /note="TIGRFAM: flagellar hook-associated protein FlgK; + PFAM: flagellar basal body rod protein; protein of unknown + function DUF1078 domain protein; + KEGG: cth:Cthe_2243 flagellar hook-associated protein + FlgK" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-associated protein FlgK" + /protein_id="ACL74483.1" + /db_xref="InterPro:IPR001444" + /db_xref="InterPro:IPR002371" + /db_xref="InterPro:IPR010930" + /translation="MQQSFFGLNIALSGLYTAQRNLDTVGHNLSNASTPGYSRQQSIQ + SASNPLAVMDGTGMVGTGSQVTGVERIRDTYLDFKYWSENVANGEWSKKAELMGEIQV + TFNEPSKSGFVKIMDGFFDSLQELSKDPSSGAARALVVQKATTLAKYFNNTATHFEQF + QNDINDQVKTDVDQINIIASQIQLLNKQIYNYELTGGTANDLRDSRTLLVDQLSKLAN + IQAKEIPYGKLPNGEDDIHFQITLSGKTLVDHFSATKLIVVQRNIKLNEEDIGNLYDI + KWEDGNSVNITGGELRGLLDVRDGKDGIDGTPIYKGVPYYQRKLNEFVRTFAINFNEG + YTRNDALPDGYEHNGVGHIEGYGYDSDLTDAPTGIRFFTMLCVGDTPISGSAFIGTAT + SVGDIANQYNQITAKNFSVSSDIIDDANRIATSDADGQNGNTNILKKLMGIRSNQSLF + KEGAPEDFMKSLVAGMGIDAQQAETFAKTQKALVRQVDNRRMSVSGVNLNEEMTNMVK + FQQSYNAAARMIVTMGEIYDTLINRLGVG" + gene 112539..113468 + /locus_tag="Ccel_0096" + CDS 112539..113468 + /locus_tag="Ccel_0096" + /inference="protein motif:TFAM:TIGR02550" + /note="TIGRFAM: flagellar hook-associated protein 3; + PFAM: flagellin domain protein; + KEGG: cth:Cthe_2242 flagellar hook-associated protein + FlgL" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-associated protein 3" + /protein_id="ACL74484.1" + /db_xref="InterPro:IPR001492" + /db_xref="InterPro:IPR013384" + /translation="MRITNNMLISNMLTALGNNESRLSKYQNQLHTGKKIQLPSDDPI + VAARALKLRTDVSKIEQYQKNLGDAQSWVDATDAALAQIGDILKRAKELATQAANGTN + SITETSDIGQEMKQLKVQLVHIANTTYSGRYMFSGFKTDQKLIEDDETSANFGKFEID + VNTVTEKIQFEIGAGDNININVAGGDIFNSGGNAVNGGEPAMIALFTNVIADLDSGDN + AGVSSQLSQFDQQIDNLLRVRADIGARQNRIDLSADRMSNDLVNMTSLMSKNEDVDPA + ETIMNLKNEENVYQASLAGGARIIQQTLVDFLR" + gene 113503..114084 + /locus_tag="Ccel_0097" + CDS 113503..114084 + /locus_tag="Ccel_0097" + /inference="similar to AA sequence:KEGG:Cthe_2241" + /note="KEGG: cth:Cthe_2241 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74485.1" + /translation="MGLSIQTTPARISIETIDCKIERKSVNARLELKQKPPVVNIKTE + LPRVLIDQYECFAEEGLKNNIDLLKEQSENAYRHVMEYIARVSQDGDAMAKIGKKANI + MIDIARRNSVTIHEFGMVTMPMSRPKIDVVGGTVEFDPEPINDIGMRNGVTATYIPPK + TDFNYTPGKVNTRVESYGSIDIKYTGNNVDSYI" + gene 114168..114614 + /locus_tag="Ccel_0098" + CDS 114168..114614 + /locus_tag="Ccel_0098" + /inference="protein motif:PFAM:PF02623" + /note="PFAM: protein of unknown function DUF180; + KEGG: cth:Cthe_2240 flagellar assembly protein FliW" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF180" + /protein_id="ACL74486.1" + /db_xref="InterPro:IPR003775" + /translation="MLVKTTHFGEINIKDEDIIEFSEGIVGFEDIHRYGIIRNQNSDS + PFSWLQAVEKSELAFAVVDPFVIKKDYDFVLSDEYVKALDINDPSQVNVYAIVVVPDD + LTKISMNLKAPVIVNKDNRKAAQVILDTDEYTVRHYIMDELQKQEV" + gene 114616..114834 + /locus_tag="Ccel_0099" + CDS 114616..114834 + /locus_tag="Ccel_0099" + /inference="protein motif:PFAM:PF02599" + /note="PFAM: carbon storage regulator; + KEGG: lbf:LBF_3098 carbon storage regulator protein A" + /codon_start=1 + /transl_table=11 + /product="carbon storage regulator, CsrA" + /protein_id="ACL74487.1" + /db_xref="InterPro:IPR003751" + /translation="MLVLSRKKDQSLMIGNDIELTIIDIQGDQVKIGLKAPKNVSIYR + KELYLEIQEENKKAATADVVELDSIFKK" + gene 115020..115841 + /locus_tag="Ccel_0100" + CDS 115020..115841 + /locus_tag="Ccel_0100" + /inference="protein motif:PFAM:PF00700" + /note="PFAM: flagellin domain protein; + KEGG: esi:Exig_2443 flagellin domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="flagellin domain protein" + /protein_id="ACL74488.1" + /db_xref="InterPro:IPR001029" + /db_xref="InterPro:IPR001492" + /translation="MRINHNIAAMNTYRQLTNNTTASSKSLEKLSSGLRINRAGDDAA + GLAISEKMRGQIRGLNQASRNSQDGISMIQTGEGALATVSNILVRVKELAVQAANGTY + DATNDLTRIKEEITELSAQIADITTNTKFNGISLLNNAAGITLQVGQETSQTLKIDTT + KTNLKTVADAVDLYKGWADSAAASGAIDAVEGLINNVSAMRSYFGANQNRLEYNINNL + DTYSENLSASESRIRDVDMANEMMEFTKQNILSQAAQSMLAQANQQPQGVLQLLR" + gene 116068..116889 + /locus_tag="Ccel_0101" + CDS 116068..116889 + /locus_tag="Ccel_0101" + /inference="protein motif:PFAM:PF00700" + /note="PFAM: flagellin domain protein; + KEGG: gka:GK3131 flagellin protein" + /codon_start=1 + /transl_table=11 + /product="flagellin domain protein" + /protein_id="ACL74489.1" + /db_xref="InterPro:IPR001029" + /db_xref="InterPro:IPR001492" + /translation="MRINHNIAAMNTYRQLTNNTTASSKSLEKLSSGLRINRAGDDAA + GLAISEKMRGQIRGLNQASRNSQDGISMIQTGEGALATVSNILVRVKELAVQAANGTY + DAANDLARVTEEIEELGLQITDIQTNTKFNGISLLNNDTGITLQVGQETSQTLLIDTA + KTNLKDVTAAVVLYKDWAATTDANGAIDDIEGLINDVSAMRSYFGANQNRLEYNINNL + DTYSENLSASESRIRDVDMANEMMEFTKQNILSQAAQSMLAQANQQPQGVLQLLR" + gene 117174..118004 + /locus_tag="Ccel_0102" + CDS 117174..118004 + /locus_tag="Ccel_0102" + /inference="protein motif:PFAM:PF00700" + /note="PFAM: flagellin domain protein; + KEGG: gka:GK3131 flagellin protein" + /codon_start=1 + /transl_table=11 + /product="flagellin domain protein" + /protein_id="ACL74490.1" + /db_xref="InterPro:IPR001029" + /db_xref="InterPro:IPR001492" + /translation="MRINHNIAAMNTYRQLTNNTTASSKSLEKLSSGLRINRAGDDAA + GLAISEKMRGQIRGLNQASRNSQDGISMIQTGEGALATVSNILVRVKELAVQAANGTY + DAANDLKRITEEITELGAQVTDIKDNTKFNGISLLNGNSGNNIVLQVGQETAQKLTIL + TATTDLTAVAKAVTDYAGAWTASSAASTSINDVETQINKVSAMRSYYGANQNRLEYNI + NNLDTYSENLSASESRIRDVDMANEMMEFTKQNILSQAAQSMLAQANQQPQGVLQLLR + " + gene 118101..119345 + /locus_tag="Ccel_0103" + CDS 118101..119345 + /locus_tag="Ccel_0103" + /inference="similar to AA sequence:KEGG:Clos_2508" + /note="KEGG: aoe:Clos_2508 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74491.1" + /translation="MTEKKKVFLAPQYFRKFKCIGSECEDSCCKGWKVSIDKETYKKY + RCVQNVELRPLLDKYVTRERKNGGDLVNYAKIKMLDEEGICPFLSDKKLCRIQLEYGE + GYLSKVCTTYPRNAIRVDNTIEMVTSLSCPEAAKLALLDPEIMEFDEYEDIPNPSLMG + SCAFNTQDKQFVNRPQRYFWDLRIFTIDILQNRNYFMWERLIILGLFIEKLNKSVDEN + KINDIPDIIQSYNKMIEEGTFKGALDSIPAECKVQLQLIKDIIDIRVNSGVLNKIYME + CYEHFLKGINYTEEATKEEIINNYQKAFEEYYKPYMDSHEYILENYLVNYVFSRLFPF + SSESIFDAYMLLVLHYAIIKVHLIGMAGYNKGLEDDMVIKLISTFTKIVDHNTVFLST + ITKQLKEKRFNTLAYMTIMIKN" + gene 119442..119828 + /locus_tag="Ccel_0104" + CDS 119442..119828 + /locus_tag="Ccel_0104" + /inference="protein motif:PFAM:PF03646" + /note="PFAM: flagellar protein FlaG protein; + KEGG: cth:Cthe_2219 flagellar protein FlaG protein" + /codon_start=1 + /transl_table=11 + /product="flagellar protein FlaG protein" + /protein_id="ACL74492.1" + /db_xref="InterPro:IPR005186" + /translation="MKIDSNELVSKSISSKSSNADIQKISTVSKPDRMLTTTKSISQI + NNYDKDNMPVSERVVIEAIQKANKAISGGNRRFEFSIHEKTNEIVVKVFDSDTNELIR + EIPNEKVLDMVAKICEMAGILVDERR" + gene 119833..122169 + /locus_tag="Ccel_0105" + CDS 119833..122169 + /locus_tag="Ccel_0105" + /inference="protein motif:PFAM:PF07195" + /note="PFAM: flagellar hook-associated protein 2 domain + protein; flagellar hook-associated 2 domain protein; + KEGG: cth:Cthe_2218 flagellar hook-associated 2-like + protein" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-associated 2 domain protein" + /protein_id="ACL74493.1" + /db_xref="InterPro:IPR003481" + /db_xref="InterPro:IPR010809" + /translation="MNINSSGTNGLQGTTNYSRLTGMVSGFDTDGLVKASLSGDQAKI + DKIKQSKELNMWMIDAYRDVTSSLQSFYNQFFDSVTSTTNLKLASTFSSYNTVLAAGS + PSDVISVTAGVGVRAGVYSLSNIVAATNARISTGTDITKTVETGVISQADLDTIKSSN + YNNIFKITLNGKTADITLDNDAGQIASVDDLVSQLQGKLNAAFGVDSSGNGKVKVENN + GGKLKFTTVRNTDSFTIGTINNAGANKLFSTAPTETTPFDLNGGNNQFELTIGNNTKT + VTVPPLAGNSTFTTADDLKAAIQNGIDAAFGAGSGITAEVNNGKVVLKSESAVNYSIG + NTANGATNAILQIDSSNISNKVDLNTKLSSMGAGFAIDPFKNSDGTSIKNEDGTFSKN + IEFTITSSKGTSTFSFDPATTSINDIMRKVNMDTTANATMSYDVTTNSFRIQAKDTGA + TSKLDIVDTAGGFMSSLGISGTGAVGSDASVTVTGDDGTSMTIVRPDNSFTYAGLTFN + ISKDLPIGADPIKVTVSGDTSKTFNTIKSFVDQYNALIDKLNTKISEKKERSYLPLTE + AQKASMTTDQIEKWEVKAKTGLLQGNTDIQNTLDRLRTALYDSVEGVGISLYSIGITT + STDYRQKGKLVIDESKLKEALANNPDEVTNLFTAASDKSYYKASGDYAIKRERYRESG + LADRFSDIIQDAIRTTPDARSNPGTLIMKAGQVGDASEYTNSLIKEILGFDKIIDELN + AKLTSKENALYAKYANMEKMLSRMSAQSGWLASQFGGQ" + gene 122208..122612 + /locus_tag="Ccel_0106" + CDS 122208..122612 + /locus_tag="Ccel_0106" + /inference="protein motif:PFAM:PF02561" + /note="PFAM: flagellar protein FliS; + KEGG: cth:Cthe_2217 flagellar protein FliS" + /codon_start=1 + /transl_table=11 + /product="flagellar protein FliS" + /protein_id="ACL74494.1" + /db_xref="InterPro:IPR003713" + /translation="MTINNGYNQYKENSVYTATPEELTLMLYNGLVKFIMLAQSAIDD + KNIEKANNSIIRAQDIILEFQVTLDMKYEVSNNLYSIYDYMHRRLVQANIKKDKDILE + EVLGMAKELRDTWTQAMKIAKRRGPSTDQIAR" + gene 122698..123180 + /locus_tag="Ccel_0107" + CDS 122698..123180 + /locus_tag="Ccel_0107" + /inference="protein motif:PFAM:PF05130" + /note="PFAM: FlgN family protein; + KEGG: cth:Cthe_2216 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="FlgN family protein" + /protein_id="ACL74495.1" + /db_xref="InterPro:IPR007809" + /translation="MTPEQYIQKLTELSLKKLDNMKEILNLTKEQSEVITEDSINELQ + NIIDLKQKLIEEINELDDAFEVYYSRLKSVLGVERIEEISISKYQGTERLQQTVKLIF + DTTKEIQAAENENSVKAKKVLDSLGGQIRQVKQGKIANNGYNIGGKLPQQSYYFDTKK + " + gene 123349..124686 + /locus_tag="Ccel_0108" + CDS 123349..124686 + /locus_tag="Ccel_0108" + /inference="protein motif:PFAM:PF07646" + /note="PFAM: Kelch repeat-containing protein; Kelch repeat + protein; + KEGG: LOC100082187; similar to kelch-like 5 (Drosophila); + K10442 kelch-like protein 1/4/5" + /codon_start=1 + /transl_table=11 + /product="Kelch repeat protein" + /protein_id="ACL74496.1" + /db_xref="InterPro:IPR006652" + /db_xref="InterPro:IPR011498" + /translation="MRLSNKLKIFSAMVLMLVIVVSSSMVFAADPNTWTTKAPMATAR + YNHEAVVLNGQIYAIGGQTTGAATLKSVEQYDPATDKWITKAPMTYAKHAHQVVVING + KIYTIGGLGDVSGCMYSLEEYNPETDTWKTKASMSTARGHFGATVVNGKIYAMGGSSV + KSMEEYDPANNIWVTKASMSVDRMLFKVAVVNGKIYAIGGYNSTGYLNSVEEYDPATD + KWTPKAPMNIGRSAFEIAVLSGKIYVMAGANTRSTEVSESVEVYDPTTDTWTTKASMP + TPIAGKAVTLNGKIYMVGAGTGRNIVEEYDPATDKWTYDAPLTTGRAYDQSVVANGKI + YHIGGSITNSVEEYTPTNTGGSSEGGNENPPVITGNSAILELTMVNGVIKEYDLNAAE + LDSFLTWYDNSSEGSAPSYYIFNKKNNIKPFLSRKEYIAYSKIASFEVKEYAE" + gene complement(124785..125762) + /locus_tag="Ccel_0109" + CDS complement(124785..125762) + /locus_tag="Ccel_0109" + /inference="similar to AA sequence:KEGG:Cthe_2214" + /note="KEGG: cth:Cthe_2214 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74497.1" + /translation="MRLFPVAYAERKSVLPKNIFLAVIYIIVLLLAAVAVVSFLSAWS + ITHPKKVTTPQISSNIAPDYNNIRFTVGESKEKINGWFFPCSGSRKTVLMAHSYGKNR + LQFGEQTFPLIASLNREGFNVLTFDQRGSGNSSGSVATFGKNETADVLSAIKYLKQQS + TDQIILMGFSTGASSCLSALTQTPYRDSIIGVIVDSPYSNIDDYIDYIVDSSLWLPNI + PFKPVVKFAVKKISKVDSSLDIISKVPSIIPTPVLLIDGAQNIPSTSDNTKLIYEVYK + RKSPVQAHYWNSGAPSYGESYLSVQDKYIDQIVDFSQECVKDAEKAVQK" + gene 125938..126828 + /locus_tag="Ccel_0110" + CDS 125938..126828 + /locus_tag="Ccel_0110" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: tex:Teth514_1289 radical SAM domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74498.1" + /db_xref="InterPro:IPR007197" + /translation="MHEICSCCPRHCGIDRNSVTGFCGVPEQPKVAKVFLHMWEEPCI + SGTNGSGTVFFSGCNLKCVFCQNYEISQEGHGKVITIDRLQEIFLELNEKGAHNINLV + NPSHYTKVIKEAILPLKQRGKINIPIVYNTNGYDSPETLQDMTGIVDVYLPDFKYFSG + KTASKYAAASDYPQVCRNAVLEMYRQVGSPVLDSAGIIKKGLIIRHLIMPGHVNESMS + ILDWISENLPGDVYVSLMSQYTPYYNAQNFPEINRPITRNEYYKAVNHLYRLGLEEGY + VQERESSDTQYIPDFNLEGV" + gene 126931..128511 + /locus_tag="Ccel_0111" + CDS 126931..128511 + /locus_tag="Ccel_0111" + /inference="protein motif:PFAM:PF00069" + /note="PFAM: tyrosine protein kinase; Serine/threonine + protein kinase-related; + SMART: serine/threonine protein kinase; + KEGG: cac:CAC0404 TPR repeat-containing serine/threonin + protein kinase" + /codon_start=1 + /transl_table=11 + /product="serine/threonine protein kinase" + /protein_id="ACL74499.1" + /db_xref="InterPro:IPR000719" + /db_xref="InterPro:IPR001245" + /db_xref="InterPro:IPR002290" + /db_xref="InterPro:IPR008271" + /db_xref="InterPro:IPR017442" + /translation="MLDNYFHSKYKYIRLLGRGGCGDVYLAENVKLGNLWAVKEIAKG + RETTISGYLEPEILKRLNHPALPRICDVYEDECCIYIVEDYIEGISLKRIIKEKGSIE + EKKVAEWAVQLCSVLDYLHSQKPDPIIYGDMKPHNIILAKGETIKLIDFGISAVVNIS + GSKPPGMTETAFIGTKGYAAPEQFMGGYLCPATDIYSLGITLIHIITGVDPIKQYSFY + QDNNFSSHLSPEMYQILKKCINLKPEFRYQTAEELMKALRHYLLAGSDSLFYKSLQGI + SSPYLFSKIIAVTGASGTGVSTLTVAMSEQAAKSGNSVCIVDLSNSVDLAKIIVRDDK + GYLENLPVKVKPHMYYVRPSIKLFADSSENVILYKLLGQLQEKYKYIFIDGPPGILNP + IERYLDNIFIISDMNPYNISKPFSYLEQDSLMEKIVSRTSFILNKFYKGELGSDLLIY + SVLNKSAYVKLKKQISGVEVFEVPYSEKVYLKWMYGYFDKFTGFNCLLSDSFKKSISN + IISHKVIPNEKKSLLKRS" + gene 128517..129173 + /locus_tag="Ccel_0112" + CDS 128517..129173 + /locus_tag="Ccel_0112" + /inference="protein motif:PFAM:PF08666" + /note="PFAM: SAF domain protein; + KEGG: cac:CAC1974 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SAF domain protein" + /protein_id="ACL74500.1" + /db_xref="InterPro:IPR013974" + /translation="MSKRLIIKTVLICIGLFLIMDSALFAYIFTKYPLNMEKQVSVVV + ATADIKKGTVIEERFLRKKDVWESTVNSSIERDIGNIEGKKALTDIYKDDYIRSCDLL + EKKDWYKDDERIIVLPTNMEERLANLIRKGSYVDIRLQKDSGEATEDILYKIKVEDVL + DETGTALDSKSAVNSKTAYFKLVLGKKERQKIYSAAKNGRLIYELYCDNIQKSGEEFK + " + gene 129173..129985 + /locus_tag="Ccel_0113" + CDS 129173..129985 + /locus_tag="Ccel_0113" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: rde:RD1_3835 chain length determinant domain + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74501.1" + /translation="MGKTVAVFSGAKNSGKSVVTYILANQIREIISEDKKVLVCCLNS + KFSLLYKLLGIDESAPGIEELINLQESGYGQKSGSLHDIIPKSNGIHFLGSYKTTISY + VNRNMAGFSKLIDRLEKDFDLIIFDTVSSKENAPTNIALEKSSLMINLFVQDAESVNT + INSIMEGRTERETMYLISKYRDIYPRVGDIKRRFSLGKVYTMNYCRTLQEMKNRDSLH + FYLQRDTECNSSARLISRYIAEAFSLELKPSEKEQKGVNYLKSIFSNMFMIQ" + gene 130032..131576 + /locus_tag="Ccel_0114" + CDS 130032..131576 + /locus_tag="Ccel_0114" + /inference="protein motif:PFAM:PF00437" + /note="PFAM: type II secretion system protein E; + KEGG: cbl:CLK_A0282 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="type II secretion system protein E" + /protein_id="ACL74502.1" + /db_xref="InterPro:IPR001482" + /translation="MRTLQKLCLKGLINYVEEELRLNGFNGIKEFQVNSASILETAKQ + TQKIMAMDGSPKAREFMLNSIYFLLIEKSEIITPENIDGLLGEYHINYYKNIYTGSDS + GCISKPIDTELAEYLSRYSISTGDDFDIKLQKLTQIIYQEVYGYGILDELIFDTGLNE + VACTRSDYIWIQYKGIKRHIPNKAFCFRSEDSYRKLIENRLTSTAREEMNAGAPLVYA + VLKNGARVTALRPPLSKYYVVNVRLFAPKTQLVNYRDNFVEQRIARIIELLAGKGRRN + VAIIGEQGSGKTTAADELIIKQLDPDISIGLAENIHELNVSSNYPGKNIVELQYTKEF + KPSDITEVFFRLNRDIVIYGEVRNSYEAFEMIKAMLRQARGSLFTFHSSSSRRMIHDL + RQLLMQTGYYTDFREAQFDVADAVDLVIHIKLDRETGQRYVYKVSEVLAQEDSMTFQI + NDLFVFDREKGKYISNKNGLSKQQLLSCLEYEFTQSDAEELSRLFCQNYSDDSSVSFV + PEGFIV" + gene 131573..132532 + /locus_tag="Ccel_0115" + CDS 131573..132532 + /locus_tag="Ccel_0115" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tfu:Tfu_2275 putative integral membrane + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74503.1" + /translation="MMDIGRLSAEIITLLNHYQPYIIMLLTGLLLFLAGIGTSVYKGI + LKESKSGIKKAKLSRLVEFLEVFTQKFPLKYLSNRLDKALGYLILDNITQRKLVSIFT + VFIPITGLLIYCTIEAIMKLWYTKLAAIALCFMVPYYTFTLTLDYLKYSIKQRIPAFI + DSFRSSFVSHNRIKPALQECCSNSNKHLGRIMLRVSDSSDLNDSLRAVRDRISDTWFN + IFVTLLVNYRENGGELINQLYKLNKTITRYNNIEKKKNRRLIWYEFFTLGASIFSLPV + IMLINRMILGTNMRLYYNTAQASGKIAIYSISALIVVRILRRL" + gene 132558..133673 + /locus_tag="Ccel_0116" + CDS 132558..133673 + /locus_tag="Ccel_0116" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74504.1" + /translation="MLFILLITAGIIAIVCGLNFKVVRVSKKNYRKSISSVFESLEAN + RLIKKLLDIFTRNRELWFNRLETRILELSEVGINLKRLYLLKIICLILCTVIFIAIRY + TNVGYEQKLLIQDTGKNNSVLFSQTEQDETQYRFYKMVLSKAGKENLEMADNAGLFRL + VEEKVAQVINSSDQREIDEKTSWFIDKWKNTQKIDFFKPKYMFLILISLFLPDIFLVI + RWLVKGVLYKKEIIKLEYIFELLARIEGIKTLDIIYELEKASKIYAVWLRQFAAIFRY + DKMKGIEYLQKKNVKSLSKFTDIMEIYSIHDKEVALQILDREAMERDESIIMVADETL + DFIDLIAFLSIVPLVYELALLMLNPMLDIVYKAFEFI" + gene 133685..133843 + /locus_tag="Ccel_0117" + CDS 133685..133843 + /locus_tag="Ccel_0117" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74505.1" + /translation="MKQVIITITMLAIALALIIGIVVPLMGHGARTGNIAVTRGHDVL + TRLENILN" + gene 133868..134035 + /locus_tag="Ccel_0118" + CDS 133868..134035 + /locus_tag="Ccel_0118" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74506.1" + /translation="MKKIVISIAMFAIAMALLVAVIVPLANHGRENGIKVEGQLNKVD + TEINSLSGTIR" + gene 134069..134221 + /locus_tag="Ccel_0119" + CDS 134069..134221 + /locus_tag="Ccel_0119" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74507.1" + /translation="MKNIIIAIIMFALCVALVIGTVLPASELISDTGEKVYQSVKKLN + DNIKDD" + gene 134228..134674 + /locus_tag="Ccel_0120" + CDS 134228..134674 + /locus_tag="Ccel_0120" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74508.1" + /translation="MNKIYAFFIIIPLIAVLFLKTLSFYEFDTKQRYVKNEVDSIAHK + VMITGAMTVSDKEELLEKLGKLGTFRASNISIKCGSIQPDGTVAELGDYVLGSVLDRG + SIFTIYVDSESVSIFSETEGNSADEDNELHYRAKATCRVEKSSRED" + gene 134694..135332 + /locus_tag="Ccel_0121" + CDS 134694..135332 + /locus_tag="Ccel_0121" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74509.1" + /translation="MGVIFIGLTVTFLVVFAFVNIADYAVYTYKRNSISKAIDYAVTA + AVQDIDRGKSFEGLAEGFDENTGRRLSDGVEIDIDRAEKTFLSVFNSNCNKEQTDISR + NLLICATFARGQRVSYKIKKSSGEVVDGTVDSPTLIEDRINEAAKGYWPDSDDNSSRI + AINGNPKTNMIERGTYLFAYIKCIRITGVFTERELTLSCFGGAKLDRANAQN" + gene 135466..136335 + /locus_tag="Ccel_0122" + CDS 135466..136335 + /locus_tag="Ccel_0122" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cbk:CLL_A1020 radical SAM" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74510.1" + /db_xref="InterPro:IPR007197" + /translation="MKKFKKVYIEITNVCNLKCSFCPEFGRPPEFMDIKRFKHIIREV + KPFCEYVYFHVMGEPLLNSNLQSLLKICYDNFIKVNITTNGTLLNKCSQILLDSPALR + KVSISLHSFEANEGNGSLGSYINNVVSFIKKAVHKGIICELRLWNMDNGQIKGTNEMN + NDIIKKLEESFQPGFNLELAVKNQQSVKLEDRLFIGRSEIFEWPDINKDIMDEKVFCY + GLRDQFGILVDGTVVPCCLDSEGNIPLGNIFSNLLRDILYSERARSIYDGFSGRKAVE + ELCKKCGYAKRYK" + gene 136430..138361 + /locus_tag="Ccel_0123" + CDS 136430..138361 + /locus_tag="Ccel_0123" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: amt:Amet_3372 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74511.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MNILSAEGISKSYSEKILFNDISLGIGEGDKIGLIGVNGTGKST + LLKIIAGMESVDTGRILKSNKVRVGYLEQSPAFKPGTTVLQQVFRGHSSEMLLLREYE + EILLKSSQNPSDEKLEKKLLDLMHQMDTMNAWTLESEAKTILTRLGIDSFDADVADLS + GGQRKRIAMAGALINPTELLILDEPTNHIDNETVDWLEKYLNNKKGALLMVTHDRYFL + DRVANRIIELDNGKLYSYQANYTRFLELKAQREELEQASERKRQNLYRNELEWIRRGA + LARSTKQKARIERFEKLKEADGPKQDENIEIQVGSARLGRKIIEVENVKKSYGDKTLI + SDFSYVLLRDDRIGIIGPNGIGKSTLLKLLSGKIKPDSGKVEIGETVKTGFFTQENTD + MDQNLRVIDYIRSVAEHIETANGSVSASQMLERFLFPPSVQWTPISKLSGGEKRRLYL + LSILMDAPNILLLDEPTNDLDIQTLTILEAYLDEFPGAVITVSHDRYFLDRTVNRIFS + FEGYGRITKYAGNYSDYRGYMAGREKQDDTGKAADPDKKNNSSQNKTEWQKNKEKPLK + FTFKEQKEFDEIDDVIEALETDIEKVKKDIDQSVTDFAKLQELLEKQQKLEKELDFKL + ERWTYLNELAEKIENSKKK" + gene 138387..139700 + /locus_tag="Ccel_0124" + CDS 138387..139700 + /locus_tag="Ccel_0124" + /inference="protein motif:PFAM:PF00270" + /note="PFAM: helicase domain protein; type III restriction + protein res subunit; DEAD/DEAH box helicase domain + protein; + SMART: DEAD-like helicases; + KEGG: ctc:CTC01856 ATP-dependent RNA helicase" + /codon_start=1 + /transl_table=11 + /product="DEAD/DEAH box helicase domain protein" + /protein_id="ACL74512.1" + /db_xref="InterPro:IPR000629" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014014" + /db_xref="InterPro:IPR014021" + /translation="MEQLFESMELEKSLVEALKKESITVPTDIQQKAIPEALKNRDVI + LHSSTGTGKTLAYLLPLFMKLSAEKKEMQALILVPTHELAIQVVRQIELLSQNSEIKA + TSTPIIGDVNIMRQIDKLKLKPHIIVGTPGRILELIQKRKISAHTIKTIIIDEADRLL + DDYNLDNIKAIIKTTLKERQIVMCSATISKKTVERAMPLMKEPLVIESKADMGVPDAI + EHLYFVSEQRDKIDVLRKLVRMINPKKAIAFFANSEDILVSEEKLRYHKLKAGGIHGS + NIKSDRKKTMDDFKNGRLQLLIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRAGRT + GRNGKPGVAISIVTEKEIEFIRKFEKELKIKIIPKSMFNGKIVEYKKERSMRTTGRPK + SGSPAGTEKSKISSAKRSQPVDRKKAFGDKKKWGKGPKVYHGPKK" + gene 139755..140657 + /locus_tag="Ccel_0125" + CDS 139755..140657 + /locus_tag="Ccel_0125" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; AraC protein arabinose-binding/dimerisation; + Cupin 2 conserved barrel domain protein; + KEGG: cth:Cthe_2212 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL74513.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003313" + /db_xref="InterPro:IPR013096" + /translation="METTTLPKAWEGVLGSASFIPVTSVKAIERYHDAEWSKGLSIHE + AFEMVYIKSGNGVFEIGEQNVSVGSNDIVIIKPNQSHKLSVESEDGCDFIVLYFKFID + QTEHTLSEVSLGDFINFVSGKESGSFIKLKVSHKNDIIILLNRILKEQTNDQLGSDLL + NYLMLMELFVLISRALKAEWENSIKNKSPKIKELMQSAIQFVHNNFEREISITDIAKY + VFLSSSYFTRAFKENTGLSPMQYLLNIRIKRACELLRETDQKVGEIALSVGFSNQQRF + NDIFKKQTNMTPMQYRNSAKNIHN" + gene 140802..142061 + /locus_tag="Ccel_0126" + CDS 140802..142061 + /locus_tag="Ccel_0126" + /inference="protein motif:TFAM:TIGR02083" + /note="TIGRFAM: homoaconitate hydratase family protein; + 3-isopropylmalate dehydratase, large subunit; + 3-isopropylmalate dehydratase; + PFAM: aconitate hydratase domain protein; + KEGG: cth:Cthe_2211 3-isopropylmalate dehydratase large + subunit" + /codon_start=1 + /transl_table=11 + /product="3-isopropylmalate dehydratase, large subunit" + /protein_id="ACL74514.1" + /db_xref="InterPro:IPR001030" + /db_xref="InterPro:IPR006251" + /db_xref="InterPro:IPR011823" + /db_xref="InterPro:IPR011826" + /translation="MGMTMTQKILASHAGVDKLVPGQLIMAKLDMVLGNDITSPVAIK + EFDKIGLDKVFDKNKIAIVPDHFTPNKDIKSAEQVKVCREFSKRMGIVNFFEVGQMGV + EHALLPEKGLVVPGDVVIGADSHTCTYGALGAFSTGIGSTDMAAGMATGKAWFKVPEA + IKFVLRGKPQKWVGGKDIILHIIGMIGVDGALYKSMEFTGDGVNALSMDDRFSMANMA + IEAGAKNGIFEVDEKTVEYVKEHSIRHYTVYKADEDAEYSEVYEIDLAEVKPTVAFPH + LPENARTIDNVGDIKIDQVVIGSCTNGRIEDMRIAAGVLKGRKVSDNVRCIIIPATQK + IWKQAMNEGLFDIFIDAGAAVSTPTCGPCLGGHMGILAKGERAVATTNRNFVGRMGHP + ESEVYLAGPAVAAASAVAGRIAGPDEI" + gene 142195..142686 + /locus_tag="Ccel_0127" + CDS 142195..142686 + /locus_tag="Ccel_0127" + /inference="protein motif:TFAM:TIGR02084" + /note="TIGRFAM: 3-isopropylmalate dehydratase, small + subunit; + PFAM: aconitate hydratase domain protein; + KEGG: cth:Cthe_2210 3-isopropylmalate dehydratase, small + subunit" + /codon_start=1 + /transl_table=11 + /product="3-isopropylmalate dehydratase, small subunit" + /protein_id="ACL74515.1" + /db_xref="InterPro:IPR000573" + /db_xref="InterPro:IPR011824" + /db_xref="InterPro:IPR011827" + /translation="MNAKGKVIKYGNNVDTDVIIPARYLNTSDPAELASHCMEDLDEK + FTQRVQKGDVMVAGKNFGCGSSREHAPISIKASGISCVIAETFARIFYRNAVNIGLPI + IECSEAAKDIKDNDQVEIDFDKGLIKNLTTGKTYQGQPFPEFMQEIISADGLIQYIKN + SLS" + gene 142711..143781 + /locus_tag="Ccel_0128" + CDS 142711..143781 + /locus_tag="Ccel_0128" + /inference="protein motif:TFAM:TIGR00169" + /note="TIGRFAM: 3-isopropylmalate dehydrogenase; + PFAM: isocitrate/isopropylmalate dehydrogenase; + KEGG: cth:Cthe_2209 3-isopropylmalate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="3-isopropylmalate dehydrogenase" + /protein_id="ACL74516.1" + /db_xref="InterPro:IPR001804" + /db_xref="InterPro:IPR004429" + /translation="MNYKITVLPGDGIGPDIVAEALKVLELTGKKCGHTFLFTEADLG + GIAIDRHGEPLPQSTVDICKGSDAVLLGAVGGPKWDTLPGNKRPEAGLLGIRSALGLY + ANLRPAVIYSALKDASPLKSEIISNGIDIMVIRELTGGMYFGKRGRLETDGGEAAFDT + EMYNVSEVKRIAKVGFETAMKRSKKLMSVDKANVLESSRLWRQVVVEVAKEYPEVTLS + HMYVDNAAMQLVRNPAQFDVILTSNIFGDILSDEASMITGSIGMLPSASLGATKLGLF + EPIHGSAPDIAGQDKANPIATILSVAMMLRYSLGLTEEADSIEKAVTDVLNKGYRTAD + IASSGTKVVGTKEMGKLIREHM" + gene complement(144201..145052) + /locus_tag="Ccel_0129" + CDS complement(144201..145052) + /locus_tag="Ccel_0129" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: protein of unknown function DUF6 + transmembrane; Protein of unknown function DUF250; + KEGG: hmo:HM1_1018 integral membrane protein duf6, + putative" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL74517.1" + /db_xref="InterPro:IPR000620" + /db_xref="InterPro:IPR004853" + /translation="MLITVIFWGYSFVSTKILLNELPPISIAFFRQVIASVVLIGFVI + AKKLFVKMPLKDLLLLTASSFFGIVLYFIFENTGLKYTTASNASIIVAAVPIFTLISE + SLFYKLKITGRLIICVIVSISGVFFVIFEQGSLDFTGNLLKGNMLIVGAMVSWVIYTI + ICKSLTQKYEGIVVTTYQMIAASILFIPLVLNEVDTWHIISGSGIANLLYLALFCSAL + AYYLYNVAVTNLGATFSSMFLNLIPVVSIIGGVLVLHERISAFQIAGMLLIMVSLFFV + GRNRDRK" + gene 145290..145556 + /locus_tag="Ccel_0130" + CDS 145290..145556 + /locus_tag="Ccel_0130" + /inference="similar to AA sequence:KEGG:Cthe_2206" + /note="KEGG: cth:Cthe_2206 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74518.1" + /translation="MSVNEISQHNVDLRKGFILLGGWISAVLSLFIYPFVFGMVGVIS + GILATKDEKSRVGVLLVISSIVLMGVGLAFSNRLLATILRYFGV" + gene 145600..146424 + /locus_tag="Ccel_0131" + CDS 145600..146424 + /locus_tag="Ccel_0131" + /inference="protein motif:TFAM:TIGR02069" + /note="TIGRFAM: cyanophycinase; + PFAM: peptidase S51 dipeptidase E; + KEGG: cth:Cthe_2205 cyanophycinase" + /codon_start=1 + /transl_table=11 + /product="cyanophycinase" + /protein_id="ACL74519.1" + /db_xref="InterPro:IPR005320" + /db_xref="InterPro:IPR011811" + /translation="MDDLVNGNLLIIGGAEDKWGQSKVLKHAIEMCGGPEAKIMVLTT + ATQKPEEVGKEYRNVFSRLGVKSIDILNVDSRTDANSDSVAQKVSGAAGVFFTGGDQL + RITSILGGTKTAKVLMSIYKKGIPIIGTSAGASVMSSVMIVEGNGNSAARKCTLGMSP + GLGFIDQVIIDQHFEQRGRLGRLLIGVAQNPSVLGIGIDEDTSIKVYSNASFDVIGTN + CVTVIDGASIQESNVSELKSEEIIALSNVTIHILPSGYGYDISQRKVKRPNENKHN" + gene 146462..149143 + /locus_tag="Ccel_0132" + CDS 146462..149143 + /locus_tag="Ccel_0132" + /inference="protein motif:TFAM:TIGR02068" + /note="TIGRFAM: cyanophycin synthetase; + PFAM: phosphoribosylglycinamide synthetase; cytoplasmic + peptidoglycan synthetase domain protein; Mur ligase middle + domain protein; RimK domain protein ATP-grasp; + KEGG: cth:Cthe_2204 cyanophycin synthetase" + /codon_start=1 + /transl_table=11 + /product="cyanophycin synthetase" + /protein_id="ACL74520.1" + /db_xref="InterPro:IPR000115" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR011810" + /db_xref="InterPro:IPR013221" + /db_xref="InterPro:IPR013651" + /translation="MQIQSIYCFKGRNIYSHQPVIRMVVDIGKYEEGPTKDIPGFNKK + LLEFFPEIAEHTCGVGYAGGFGERLIEGTYMGHVAEHLIIAIQNRFGYGVKYGKTRQI + ENTSKYYIIYEYCNEAFATECGRKAIEIVHSFAEGTPIDIEKIMRELKRVLLDTEMGP + STKAIYLAAKRRGIPVTRVGDGSILRLGYGKYTRIIQASLTDGSSCIAVDIASDKQMT + KKLLMDNNVPVPCGIVVRTEQEAFEAVEMVGYPLVIKPIDSNQGKGVTVNISTEDKIR + AAYSEARKYSRKVIVEKYVCGKDYRVLVVGDKVCAVAERRPPRVTGDGISTIAQLVEY + ENTNPLRGEDHEKPLTYIKLDDISINYLKLQGYSPNSILKAGQYVNLRQNGNLSTGGT + ARNCTRDIHPKNAEYAIIAAKAMGLDIAGVDFSAQDISIPIDNNRGAIIEVNAAPGLR + MHLHPSEGEPVNVADSILDMMYPANKPFSIPVVAVTGTNGKTTTTRLIRHTLSLLGYN + VGMTSTSGIYVGNECVQKGDNTGPVSAEVILANKEVDVAVLETARGGIVRRGLGYDLA + DVGVLINISEDHLGIDGINTLEDLAKTKALIVEAVKHDGYAVLNADDGMTPYVLERTR + SNVIMFSRGISNPVFKRHCKNSKNIAVYVRDGYIWIQRNGKKLPLISLDDIPITFGGI + VDCNIENSLAAISALIGLNIPLDIIIKGMSTFQPDTQLNPGRFNIFDMGTFKVMIDYS + HNIAGYSAVVKFMQKVKAKRLVGIIGMPGDRQDSNFKEVGELCAKSFHRIYIKEDIDL + RGRRRGEVANIFEQSMINAGAKRENIEIIYSETEALEKAMLDAQPGDLIAMFYEEFDP + AIQVINRFKKEQEHANEILEGSFNTTIEKLGQFSTNA" + gene 149283..149933 + /locus_tag="Ccel_0133" + CDS 149283..149933 + /locus_tag="Ccel_0133" + /inference="similar to AA sequence:KEGG:Cthe_2584" + /note="KEGG: cth:Cthe_2584 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74521.1" + /translation="MPEVYYYASSDKVSDIIDCGLKLSASYDKEVLIDGNVQQCFVGL + INPRDDINSYNSQSLTCIKINVRSDKCYVADSFVYDTIKDKPENLELYNKSVIPLEKY + IFGTYRKPECLITSTILAGEASRLDRCMDLPVIYENSEALYINNILNNFKEQYNNFDD + HLLYSLFSRLAEMGKVDTIKSSDGGKAIFISSSGELYCIRKPELIKIFQTEVPCEK" + gene 149923..150903 + /locus_tag="Ccel_0134" + CDS 149923..150903 + /locus_tag="Ccel_0134" + /inference="protein motif:TFAM:TIGR00121" + /note="TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; + PFAM: biotin protein ligase domain protein; biotin/lipoate + A/B protein ligase; Helix-turn-helix type 11 domain + protein; + KEGG: cth:Cthe_2585 biotin--acetyl-CoA-carboxylase ligase" + /codon_start=1 + /transl_table=11 + /product="biotin/acetyl-CoA-carboxylase ligase" + /protein_id="ACL74522.1" + /db_xref="InterPro:IPR003142" + /db_xref="InterPro:IPR004143" + /db_xref="InterPro:IPR004408" + /db_xref="InterPro:IPR013196" + /translation="MKNKILKILKEEDKYISGEDISKALNVSRTAVWKHINELRNDGY + VIQSSSKKGYRFLKAPDILDKREINIPKGQFIGSNIRYFEEIDSTNSYAKKIANEGCA + HGTVVISEVQTMGRGRVGRQWQSDTAEGIWFSIVVRPDLEPENIQVITLAASVAVVEA + IKETCGIICGIKWPNDIILNGRKLGGILTELSAEPGHVNYVVVGIGLNANQDLEHFDY + EIRQKAISLKMYAGKSISRANLLGSILTRFEKIYKSILLGENRDIIDKWTAYSVTIGK + EVKVAYKDMEYFGKALSVASDGRLIVECKDGVTREISAGEIQVRGLLGYI" + gene 150937..151401 + /locus_tag="Ccel_0135" + CDS 150937..151401 + /locus_tag="Ccel_0135" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2587 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74523.1" + /translation="MVKKNEYPRKNYVKADGQVGQQSTQSTTQQKVYQKDSVRSTRPP + RDQHKDGFQPRENNQQKREFNSRDNSQRENSGRESGSYNNQHRENNYQRNYHRENYQG + RENRESNRQHYQRTAIRPRAEETVEDIENDIVRIQKEIDLELKEIRSMRLGV" + gene 151422..152189 + /locus_tag="Ccel_0136" + CDS 151422..152189 + /locus_tag="Ccel_0136" + /inference="protein motif:TFAM:TIGR00671" + /note="TIGRFAM: transcriptional activator, Baf family; + PFAM: Bvg accessory factor; + KEGG: cth:Cthe_2588 pantothenate kinase" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional acitvator, Baf family" + /protein_id="ACL74524.1" + /db_xref="InterPro:IPR004619" + /translation="MVLVVDVGNTHIVLGVFEGKKLLANWRLGTNKERTSDELGMLIL + GLFNHEKLSIDKVKSVVVASVVPPIMYTLEHAIKKYINIQPMIIGPGTKTGINIRYQN + PKEVGADRIVNAVAGFELYGGPLIIVDMGTATTFCAISEKGEYLGGVICPGIKISAEA + LYQKAAKLPRIDLVKPESVIGKNTISSMQSGVFFGYVGQVDYIVNRIKNEMHEENVRV + IATGGISRMITEESITINEFNPTLTLEGLRLIYERNV" + gene 152422..153354 + /locus_tag="Ccel_0137" + CDS 152422..153354 + /locus_tag="Ccel_0137" + /inference="protein motif:TFAM:TIGR01771" + /note="TIGRFAM: L-lactate dehydrogenase; + PFAM: Lactate/malate dehydrogenase; + KEGG: cth:Cthe_0345 malate dehydrogenase (NAD)" + /codon_start=1 + /transl_table=11 + /product="L-lactate dehydrogenase" + /protein_id="ACL74525.1" + /db_xref="InterPro:IPR001236" + /db_xref="InterPro:IPR001557" + /db_xref="InterPro:IPR011304" + /translation="MGFKVAIIGAGFVGASAAYAMSINNLVSELVLIDVNKEKAYGEA + LDISHGLSFSGNMTVYSGDYSDVKDCDVIVVTAGAARKPGETRLDLAKKNTMIMKSIV + TDIMKYYNKGVIVSVSNPVDVLAYMTQKWSGLPANKVIGSGTVLDSARLRTHISQALD + VDIANVHGYIVGEHGDSQLPLWSATHIAGVQFDDYVKATGLNVDKEALFNEVKVAGAT + IIKNKGATYYGIALSINRIVESILKDFNTIMPVGTVLDGQYGLKDVLLNVPTIVGGNG + AEKVLEVNITDAELQLLKHSAEQVRAVINEVKDI" + gene 153543..154718 + /locus_tag="Ccel_0138" + CDS 153543..154718 + /locus_tag="Ccel_0138" + /inference="protein motif:PFAM:PF03949" + /note="PFAM: malic protein domain protein; malic protein + NAD-binding; + KEGG: cth:Cthe_0344 malate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="malic protein NAD-binding" + /protein_id="ACL74526.1" + /db_xref="InterPro:IPR000235" + /db_xref="InterPro:IPR012301" + /db_xref="InterPro:IPR012302" + /db_xref="InterPro:IPR015884" + /translation="MGNIYEDSLKAHEEWQGKIEVVCKAPLKDKRDLSLAYSPGVAQP + CLEIQKDVENSYKYTRRHNLVAVVTDGTAVLGLGDIGPEAGMPVMEGKCCLFKTFGDV + DAFPLCIKSKDVDTIVNTIKLLSGSFGGVNLEDIAAPRCFEIEERLKKETDIPIFHDD + QHGTAIVTAAGLINALKVVGKKMEDISIVVNGAGAAAIAITKLLFSMGLRKVVLCDTK + GAIYEGRDNLNPIKAEMAKITNLEGKKGLLKDVIVGADVFIGVSAANLVTKEMVKSMA + KDPIIFAQANPTPEILPEDALEAGAAVVGTGRSDYPNQVNNVLAFPGIFRGTFDVGAR + EINDEMKIAAAYAIAGLVSDEERNAEYVIPAPFDPRVAKAVAEGVAEAARKSGVARR" + gene 155053..156666 + /locus_tag="Ccel_0139" + CDS 155053..156666 + /locus_tag="Ccel_0139" + /inference="protein motif:PFAM:PF08125" + /note="PFAM: Mannitol dehydrogenase domain; Mannitol + dehydrogenase rossman domain; + KEGG: mta:Moth_0429 mannitol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Mannitol dehydrogenase domain protein" + /protein_id="ACL74527.1" + /db_xref="InterPro:IPR000669" + /db_xref="InterPro:IPR013118" + /db_xref="InterPro:IPR013131" + /translation="MKLNRNGIKDYSAWAANQVEMPKFDYDKVLGKTKEEPKWLHFGG + GNIFRGFIAALQQNLLNSGKADSGIIVAETFDYEIIDKVYKPFDNLSLLVHLNPDGSL + EKKVIASVSESLTGDTARTKDWERLKYIFRKPSLQMVSFTVTEKGYSLTGMSNEFLPD + VLHDMENGFKEPKSLIAKTSSLLYVRYLAGAFPIAMVSMDNCSHNGDRLKKSIQTIIQ + KWVDNEIVEKGFLEYINNSSKVSFPCSMIDKITPRPSETVNKALMEMGLEDTEIIRTS + RNTYISQFVNAEKPQYLVIEDQFPNGRMPLEDAGVFFTDKRTVENVERMKVTTCLNPL + HTALAIFGCLLGYTLIADEMKNTQLRKLVEKIGYEEGMPVVINPGIIDPQAFIDEVIN + QRFPNPYIPDTPQRIACDTSQKISVRFGETIKTYVSHPNYDVKSLTYIPLVIAGWCRY + LMGIDDNGNIMELSPDPMLEQLKTYISAIELGKAETVGQHLKPLLSNDKIFGVNLYEV + GLGEKIEGYFMEFIEGKNSVKNVLKKYLK" + gene 156692..157774 + /locus_tag="Ccel_0140" + CDS 156692..157774 + /locus_tag="Ccel_0140" + /inference="protein motif:TFAM:TIGR00695" + /note="TIGRFAM: mannonate dehydratase; + PFAM: Mannonate dehydratase; + KEGG: trq:TRQ2_0878 mannonate dehydratase" + /codon_start=1 + /transl_table=11 + /product="mannonate dehydratase" + /protein_id="ACL74528.1" + /db_xref="InterPro:IPR004628" + /translation="MNMTFRWFGEKDDSISLEQIRQIPGVTGVVGALYDVPVGDVWPM + DKIIALKDSVEKAGLKLEVIESVNVHEDIKLGLSSRDKYIENYRQSIINLGKAGVKVI + CYNFMPVFDWLRNNLAYPLLDGSNALCYDHDIVKDIDPVKLVEDTAKSSNGFTLPGWE + PERLSELKDTFEKYKNVNEDKLFDNLEYFLENIISACEEADVKMAIHPDDPPWPLFGL + PRIVTDRKNLERLVNLVDSPYNGLTLCSGSLGANPDNNIPDLIRNFGKMGRIHFGHVR + NLKFFGERKFHESSHLSLDGSFDMFEIMKAYHDIGFKGYIRPDHGRMIWAEKARPGYG + LYDRALGVTYLNGLWEAIGKMTSGGE" + gene 157776..159869 + /locus_tag="Ccel_0141" + CDS 157776..159869 + /locus_tag="Ccel_0141" + /inference="protein motif:PFAM:PF07488" + /note="PFAM: glycoside hydrolase family 67; glycosyl + hydrolase 67 C-teriminal domain protein; Glycosyl + hydrolase 67 middle domain protein; + KEGG: gtn:GTNG_1770 alpha-glucuronidase" + /codon_start=1 + /transl_table=11 + /product="Glycosyl hydrolase 67 middle domain protein" + /protein_id="ACL74529.1" + /db_xref="InterPro:IPR005154" + /db_xref="InterPro:IPR011099" + /db_xref="InterPro:IPR011100" + /db_xref="InterPro:IPR016160" + /translation="MYKSNVNDELYGANGYNCWLGYHLLENGELRENYSQWASNIVIS + KEPDEIKIALSELKSGINGILGVDAVVVTREPEQSSCIALGVLGRGQNIDSYVKYDEV + VQIGNEGFIIKAFKTGNSEIVVVAGTTTKGLLYGVFSLLRLLQTEATISGILKIENPA + NQLRIINHWDNIDGSIERGYAGKSIFFTDNKVTEDLGRIKDYARLLCSVGINSIVINN + VNVHKYESMLITDKYLNDVASLAQIFRDYGIKLYLSANFASTIEIGGLATADPLDPQV + RKWWKEKADEIYSLIPDFGGFLIKADSEFRPGPFTYGRTHADGANMLAEALEPYGGLV + IWRCFVYNCMQDWRDRITDRARAAYDNFMPLDGLFRENVLLQIKNGPMDFQVREPVSP + LFGGLQKTNQLLELQITQEYTGQQKHLCYLVPMWKEILDFDTMAKGRNTSVKKIITGS + VFNNKLGGMAAVTNIGNDLNWTGHQMAQSNTYGYARLCWNPDLSAEKITDEWVRMTYS + NYEKVVNTVKEMLLGSWRTYENYTSPLGIGWMVNPNHHYGPNVDGYEYDKWGTYHRAD + HKGIGVDRTVKSGTGYAGQYHKDVAGIYEDMDKCPEELLLFFHHMPYDYILKSGETLI + QYIYNTHFKGVEEVEELRNKWFSLKGWISEEIFLHVLERLDGQLEHSKEWRDVINTYF + YRKTGISDELGRKIY" + gene complement(159948..162230) + /locus_tag="Ccel_0142" + CDS complement(159948..162230) + /locus_tag="Ccel_0142" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; histidine kinase HAMP region domain protein; + KEGG: cpy:Cphy_1915 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL74530.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003660" + /translation="MKNYSVIVKLMIVLSLFIIIPIITITFIFNYGIMKYSEDEIGRS + GLGKLDSAKSVTDLLSQTINNEILHLSLDETLNRLYGMDDINQAIKDSDNNLMLYQFV + SKLSDIVKTNNAYSSVYLYLDNSNYIATSNGVYPKETFPDETWLKYYIKSKELGEPLS + WTDPRPSDTNGNSSVISYIFPLTYTTNLKGSITINIYESRLSNLINSNNYDISDFISI + INANGEVISSVDKTILNKNLTDVPYISKILNSEIERGHFIHSINEKRFLITYLKTGAE + NWTFVGVFSLDTLTTKVNSLKMSIIYISIFLLVLFVLLSYVISRRLFNPVKKLVQEIK + SRKGIDIIGNGNEFTLLSKTFDVMIKQEDQLFRTIERDQKNLRENYLLSLLRGKPSNS + EDEMKLFPLKNTLCCVIYIDKYNDFISNFSYEHQYYLKSVILNLSEEKVGESFICSGV + VLDGDKVVIIVNITDEDIIKVTHVLKSAFSIVQQEASKIIETTISVCLGGIYDDILKI + RNSYNEAQNLIKQRFIIGHEAFIYQKENTAATNKYFYPFNMEKQIFNNIDIGSKDALL + SSISSFFDEIKHNKNLSYDNIMLILNQLLGSTIKYLLDLNISVSKVFGNDFNIYSKLA + EIDTLDEAGLFLSNIYLQIIEYNEMFKVEGKSHIVKILDYIHKNYKKDIAINMLAEHV + GLSYSHVRKIFNDETGENIVNYINNMRIEEAQRLLRQTNMNINDIALSLGYNNKQSFN + RFFKKYVGINPGEYRNIKAN" + gene 162607..163563 + /locus_tag="Ccel_0143" + CDS 162607..163563 + /locus_tag="Ccel_0143" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_1916 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74531.1" + /db_xref="InterPro:IPR000515" + /translation="MGKNSTAVSKALPNKLPKKGFGHYFKRDIYLYLLLVLPVAYFII + FKYIPMYGIVIAFKEYNIFQGVLASPWIGWDAFREVFRSDDFFRALRNTFLLNGFDMI + FGFPAPIILAIIINEVKSVRYKRISQTMLYLPHFLSWVIIGGIVLQIFAPNFGMIDTI + VKDMGFKTIPFLTEKWHWLATYTGIGIWQSAGWSMIIYLAAISGIPAELYEAADVDGA + GRLRKIWSITLPAIKSTIIILFILNIGKISMIGFDRPYILGNQQVKDFSDVISTYVYR + VGLQSSRYNIATAVGLFQSIVGLVFLSVTNWIANKSGEQGIW" + gene 163583..164455 + /locus_tag="Ccel_0144" + CDS 163583..164455 + /locus_tag="Ccel_0144" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bpu:BPUM_2666 ABC transporter ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74532.1" + /db_xref="InterPro:IPR000515" + /translation="MIYKTSDKVFNIFINSITLISVILCLFPVLNVVAVSLSSNSAIL + ASKVFVWPIDFNIESYKAILKDTTMIWSLVYTIIITFAYTAIGMFLTICAAYPLTKQR + LRGRNAIMLMIIFTMYFSGGLIPDYMLVKNLNMLDSSWSLILPGVLSAFNLIVLKTFF + TSLPESLEESAILDGCNDIGVLFKIVLPLSKPVLATLSLFYAVGKWNSFMDALFYISD + SKLYPLQLKLYQIIVNSQTVDASIGDGGVSQNLPPESLKAACVVFATLPIVLVYPKLQ + KYFVSGIMIGAVKG" + gene 164518..166110 + /locus_tag="Ccel_0145" + CDS 164518..166110 + /locus_tag="Ccel_0145" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cpy:Cphy_1918 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL74533.1" + /db_xref="InterPro:IPR006059" + /translation="MKKLSTRIVSLALLTSMSVTLFAGCGSNGGTDADSSKSASSSGA + AKSGPAVELTVEVFDRATPGYKADDNFQIKWIQENFGKPNNINVKFVPVLRQQEVEKL + NVLMASNQAPDISFTYNDGIIYNYVKSGGLTDLGDLLTKNASNLTKYLGQTLLDYGKF + DGKQLAVPAKRVIEGCFSAYIRKDWLDAVGMSVPTTTDEWYQVMKAFKEKDPGKLGDK + NYPFSTFVDPNNINWTTSMLLESFKQPISEEQRMTLPNWVIPGFKDGMKFLNKLYNEG + ILNPQFALDKDGKQYEKDVSQGRIGFMIHNYDFPIRVTPGLLSELKKQVPGADMVPCD + PFTNSDGKHPKMKYNPNGLYIIVPKVSKHAEEAVKYLEWQSKPEVIKFLQNGIKGDQY + TDEVDGIPANFIQNDQLSDDKKANFTDLALIVNGKEFGDPAKNIQAASFGYPGFEDTF + KKAYDISLTDANYIPHFDTVIEAQAKYQKALSDKEAEIFVKSITCKPADFDKTYDKLV + AEYMKSGGQEIVDEKLAALKKK" + gene 166531..167331 + /locus_tag="Ccel_0146" + CDS 166531..167331 + /locus_tag="Ccel_0146" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: pmo:Pmob_0232 polysaccharide deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL74534.1" + /db_xref="InterPro:IPR002509" + /translation="MRYEFYYPQGKKKALTFSYDDGQIHDRRLVEIFNKYNMKATFHL + NSGTLGTDGFITKEEIESLYKGHEISCHSVTHPYLTKLSKEQIVEEIREDRRELENIV + GYPLRGMSYPFGEYDADVVKALDVLGIEYSRTVNSTGGFSMPGNFLEWHPTCHHNSGI + KAKLLDFKNPSPWLKLPLFYIWGHSFEFYRENNWEVIEDFCKEAADDPAIWYATNIEI + KDYICALKGLIFSVDQTIVYNPSAVSVWLSRDDRSAVELKAGQTLTFR" + gene 167379..168956 + /locus_tag="Ccel_0147" + CDS 167379..168956 + /locus_tag="Ccel_0147" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: bha:BH2109 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL74535.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MLKVLLVDDEPYVLEGLKVMLDWEAHGFRICGEASNGEDALEIV + RVCNPDLIMTDISMPRIDGLELIRLSTENLKSTAKFVILSGYDDFSYAKRAMLYNASN + YLLKPLDDVELDSVVTKLAEQIKKERKETENINKQLSFIANQSIIRLINGDNKPSLIG + RVGMLLDIAEDEEFRCILFEIDSADSWVQGEERTELNINRTTPARVIEDALDPAFQFR + IFEDGKGRIGIIASEKMPFFNTLEEFTKSLLLQLNQIFGDVVYASISDSEKGLSLISK + TYKQALFAIGFKFYSPGKSLISYENVKGLNLNFEMCTEYYNALLDFIRANRVEDIEPV + VCRLFKNFSENHSAPQIIISYLMNFQMELVKLIMEIGGDLKEFLTLALGFQKTAEHLN + MSNLQGEFLKQCLSAASHINGFKQGNPQFIVCEVKNYIKQNYCKDIKLKEVARHFYMN + SVYLGQLFKKVSGVQFNDYLNNVRVEEAKKLLQRTDMKVSEISSAVGYNDPKYFLSKF + KAITSLPPSAFKTGKTT" + gene 168975..170759 + /locus_tag="Ccel_0148" + CDS 168975..170759 + /locus_tag="Ccel_0148" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: csc:Csac_2691 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL74536.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MKLRPRILIRVNDIPLNIKFLIIYVLCILTPIIIINAAFLDKFY + TVVTQREENNYQISMQRAKNDINALIEGGIAVSHSISTDAIIYDLMDARYEDAGEYYD + IYSSTLRNRLSIYTVAYNYITNIGLYVDNPSIRAGNTYYYIDRSVRNTIWYKDLSESN + EQVLIRTYMGSSNSVPIRRIQYLSILRSSKNNPSLGSREKILKVDISLEKVFTIFNRE + RDYLSLYLIDPQNTIVCSTTGRYGLNNIDKLEKLNSESLGKENMILEAYLGNSSYFKG + WKLIGVTDRERISDSVGDTLRFVLIFAFISVLISSLLMYIIVRSYNYRLRKLSKHMLK + FKDGKFELININEGEDEIGGVIRNFNLMAARINTLINDVYKLELQKKSLELERVRAEI + NFLQSQMNPHFLFNTLNAILVVSVKNNYTEIVDVIKYLSKTLRRLLSWKDDLVTIEEE + LSFTEMYLKIEKFRFCDKFHYNINVNETLLDYQIPKMSLQPLVENACKHGIQTIKEVG + VININIDMCESGLRVSVKDNGSGIDQYTLSGIIDNVKSEVEQSTSIGIRNVYRRLRLY + YGENISFNIESCINTGTTIYFTIPFEKL" + gene 170830..172407 + /locus_tag="Ccel_0149" + CDS 170830..172407 + /locus_tag="Ccel_0149" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: bha:BH2109 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL74537.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MFKVLLVDDEPMALEALRIVADWEELGFTVCGECSNGDEALNKI + EDIKPDLVVTDLKMPGMDGLELIRKVMECVNSDIIFIIVSGYDEFDYAKEAMQYGVRY + YVLKPVFKDEFSEVLLEIGNKLKKKYQLGKMTINNISTDIGSLLGKYLIGSLGEDEIR + ARMPEKISKSKAYWSYVCLGTPRVWETVNFKNDEISEDSLSTFKEMVNTVLEGIYIYP + ILTNTVIEGIVICITSEIQTNKIIETLKSSVSTLFGEGFYLGVGNTVNELSELSESMS + QAHKAIDYRFFSAPGSIIYYQNIKDFSLNYSFKGIYKIEDMYKALDSLDEMRIKKAIE + VVFSDFRREYTAPEIIKMYVVNIIYKSISIVTSLNGSTDQIPLLDSITAILAKSLIID + EMENMAHEYCFKFVIYAKSLKDKAKNSDMKLVDEYIRNNYTRNLTIREISKKLYIHPN + YLGHQINKWFGCSFNEYLHGLRMEEAKNLIENTNLKVHEIAERVGYSSYSNFLDQFVK + RFSIKPSDYKIMLNNKN" + gene 172536..174239 + /locus_tag="Ccel_0150" + CDS 172536..174239 + /locus_tag="Ccel_0150" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: bha:BH2111 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL74538.1" + /db_xref="InterPro:IPR006059" + /translation="MMLRKRNWLVVLLTVLLAVSFTLTGCGGSDSSSSTSTSGTATAT + GSAAGEKLDPIEISFFISDPGQAPTPDNKIYKKIKEELGVTCNFEFLVGDKNQKIGVM + IAGGEYPDVVTVGSDTVSKFTGAGALVPLEDIIEKSAPNLKKHFDPFKNKVKDVEDGH + FYAMPGYGVYYNDFSINVNEGPAFFIQKAVLKDAGYPKVKTLDQYFDLIEKYKAKNPT + IDGQPTIGFEILSEGWRDFCLKNPPQHLIGHPNDGGVVVNSETNTAEFFWDKDYAKRY + YKKINEINAKGLLDPETFTMNFDQYIAKLSSGRVLGMFDQHWNFNNAELTLKTQKKFE + RTYAPLPLVFDEDTRDYYMDRPVLNVNTGYAITKSAKNPERIVKFFDALLTEEWQTIL + GWGIKDEDYKVGDDGMFYMTPEQRVNYNDQTWRLANMAHTLWYYAPKMEGTFSDGNAT + GPGGQPKEYYDALDQYDKDFFKAYGYDQQSDFFSPAPENRISYPAWQIDLVDGSPASM + ANTKVGDIATKYLPKAILAKPDKFDSVWDEYVNQLHKEDIQAYVDRINDQLKWRAENW + K" + gene 174325..175296 + /locus_tag="Ccel_0151" + CDS 174325..175296 + /locus_tag="Ccel_0151" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_3209 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74539.1" + /db_xref="InterPro:IPR000515" + /translation="MANNVTALADNKLQGKKRTGHKITWNTLVKQKQLIFMSVPMLIY + VLIFSYVPIWGWLMAFQNYKPAKGFFEQKWVGLQNFKYLLRDDNFIRDFRNTICMSFI + NLVLSYVTAIVLALLLNEIKNVFFKRTVQTISYLPHFLSWVIVTGIVATCLSTEGGIV + NIVLVKLGIINSPINWLSEGKYFWGIVGATNVWKELGWNTIIYLGAITAIDPALYEAA + DLDGAGRFKKMQHVTLPGIKATFVVLLIMSIGHVMEAGFEIQYLLGKGPVLDWSETID + IYVIKYGINQFNYSLATAAGIFKSVIAIIMLFLANNVAKRLGEERLI" + gene 175306..176220 + /locus_tag="Ccel_0152" + CDS 175306..176220 + /locus_tag="Ccel_0152" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_3208 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74540.1" + /db_xref="InterPro:IPR000515" + /translation="MINRRKPVRIGDAVFNTFNFVFMVLLMIVTLYPFLNTLAISFNN + GVDTLRGGIYLWPREFSFQNYKAIFIGGNVFHAFLVSVERTVISTVLNLFLTTMLSFT + LSRKEYVFRKPITIVFVLTMYFNAGIIPNYFLIKNLHLLNSFWVYVLPSLIAAFNMIV + IRTFIIGIPESFVESARIDGAGDFRIFIQIIFPLCKPVLATIALFVAVGAWNTWFDTF + LYCSSKQNLSTLQYELMKLLSSTQNFNANPALAAGVGANSQTADTMVTSLSIRAAITI + VAAVPIIIVYPFLQRYFVVGLNVGGVKE" + gene 176198..177484 + /locus_tag="Ccel_0153" + CDS 176198..177484 + /locus_tag="Ccel_0153" + /inference="protein motif:PFAM:PF00331" + /note="PFAM: glycoside hydrolase family 10; + KEGG: csc:Csac_0204 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 10" + /protein_id="ACL74541.1" + /db_xref="InterPro:IPR001000" + /translation="MLVELKNNPFSGRGIVMGIINDNKYSHRIVTKTAKLSGLDGSVL + KNTEVVVQQTRHKFLFGCAQFDAIPYVNNEFKGEEKERAEQRFDKFIDLFNYATLPFY + WAFYESVKGQPMIKETKKAAEWLVSNGLLLKGHTLCWHTITAPWLLDMTNEEILMAQM + KRINRDVSEFEGLIDIWDAINEVVIMPVFDKYDNGITRICKELGRIKLVSKVFSEAKK + ANPSATLLINDFNTSESYAILLEGLIEAGVPIDAIGIQSHMHQGYWGVEKTLEVLERF + SRFNLPLHFTENTLVSGQLIPPEIEDLNDYQVKEWPSTVAGEDRQAREVISHYKTLLA + NPKVESITWWDFADGAWLGAPSGFITVDNRVKPAYDELHKLIKGEWWLKPTKYMTNEN + GEITISGFFGDYEVSCQGKRIGFTFDSSNDTVKLKI" + gene 177659..180751 + /locus_tag="Ccel_0154" + CDS 177659..180751 + /locus_tag="Ccel_0154" + /inference="protein motif:PFAM:PF02836" + /note="PFAM: glycoside hydrolase family 42 domain 5 loop + region; glycoside hydrolase family 2 immunoglobulin domain + protein beta-sandwich; glycoside hydrolase family 2 TIM + barrel; glycoside hydrolase family 2 sugar binding; + KEGG: cpr:CPR_0750 beta-galactosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 2 TIM barrel" + /protein_id="ACL74542.1" + /db_xref="InterPro:IPR004199" + /db_xref="InterPro:IPR006101" + /db_xref="InterPro:IPR006102" + /db_xref="InterPro:IPR006103" + /db_xref="InterPro:IPR006104" + /translation="MIIENYFENPKILHVGTMEKRAYYVPYPPEDVNKSSDRNKSERL + HLLNGEWDFLYLKSVYNITDEFYLPGYDRAGFDKIPVPSVWQNHGYDRHQYTNIKYPF + PYDPPHVPVDNPCGVYVREFYADTSWNGMRKYINFEGVDSCFYLWINGKFTGYSQVSH + STSEFDITDYVHEGVNTIAVLVLKWCDGSYFEDQDKFRTSGIFRDVYILIRPENHIRD + FFVRTSLKEDYKKAEIKVDMDIFGSIPGIDYKLTDNSTGNIEAQGNANGKSISIEMDN + PKLWSAEIPYLYTLIIRSDYEAISVQVGIREIKAEDGIVYLNGQKIKFKGVNRHDSDP + VKGPAVDVKDMIKDLMLMKQHNINAIRTSHYPNSPLFTELCDKYGCYVIAEADIEAHG + TTAVYGGGQDGKSFPMLAHDSEFEDAVIDRVESCVIRDKNHPCVVIWSLGNESGYGKN + FESALDWLKGYDNSRLTHYESSLYPPEGYDADYSSLDLYSRMYASCEDIIEYFQGDNV + SKPLILCEYSHAMGNGPGDLEEYHEQIERYDGLCGGFVWEWCDHAVYMGRTVDGRKKY + LYGGDFGEFPHDGNFCVDGLVYPDRRVHTGLLEYKNVLRPLRLVNENSKDGKFTFKNM + LDFINTKDFLFISYEVTKNGEVILDGVIDEPGLLDIQPHEKKDICLTLHGVEEGDCYI + KFDYIQKYDTPFVGSGHLLGFDQVKLAVDKVGLKEDKITCILGEPDSKEGEISVVESD + RNAIIIGNNFRYTFNKMTGVFDKLIYKNNVILDKPMNYNIWRAPTDNDRNVRHKWEEA + GYDRTLSRSYNTQVFEENGNVRIITELSLLAVHIQRIMSISTEWNIAENGLISVNIQA + ERNMEMPFLPRFGLRLFLPEYIRNVEYFGYGPHESYADKRRSSYVGRFKSNVGRMHED + YLKPQENGSHWGCHYVKLASNCGLGLLVTGDETFSFNASYYTQEELTRKSHNFELEKC + GSTVLCVDYAQSGIGSNSCGPELMEKYRFNAQRFHYTMFLRPFMEQPSTAIVKAAHNT + " + gene 180862..182319 + /locus_tag="Ccel_0155" + CDS 180862..182319 + /locus_tag="Ccel_0155" + /inference="protein motif:PFAM:PF01276" + /note="PFAM: Orn/Lys/Arg decarboxylase major region; + aromatic amino acid beta-eliminating lyase/threonine + aldolase; Orn/Lys/Arg decarboxylase domain protein; + KEGG: cth:Cthe_2108 arginine decarboxylase" + /codon_start=1 + /transl_table=11 + /product="Orn/Lys/Arg decarboxylase major region" + /protein_id="ACL74543.1" + /db_xref="InterPro:IPR000310" + /db_xref="InterPro:IPR001597" + /db_xref="InterPro:IPR008286" + /translation="MKTIKEYNLPIYNYLRKYAKEDINVFHMPGHKLSRGIPRELSDD + VLKLDVTEIDGTDNLHYPEGIIKEAQELAARAFGADRTFFLVNGSTCGIQAAIMSVCT + RGQKIIIGRDSHKSVVSGLILSGAKPIFVYPEYNSKFGIHEGITAQSIENALSMNPDA + AAVLITRPNYYGICSDIKNIADTVHSYGKPLIVDEAHGAHLSFSPLLPPSANQYNADV + VIQSAHKTLPAVTQGAYLHLNGPLIDIDKILFNLAMLQTSSPSYIVMTYLDIARELMQ + TEGIQRLKYLLDEINIFNGRVSEIGGYKVLSGKYLGINTIQDPTRLVLNVSRLGISGF + QAEATLRAELSTQVEMADYENIVLITTIADKRRSFERLYESLSKLAQIPFDKDCIQQM + EKKREFGEIQKPSDGFSVLSPYEAYAAQKEQKELKSCLGRICAGVITPYPPGIPILYP + GEIIDGEKISYIEYIIDLGGTVNGVGNNNSVQVVK" + gene 182372..182992 + /locus_tag="Ccel_0156" + CDS 182372..182992 + /locus_tag="Ccel_0156" + /inference="protein motif:PFAM:PF02223" + /note="PFAM: thymidylate kinase; + KEGG: aoe:Clos_0060 dTMP kinase" + /codon_start=1 + /transl_table=11 + /product="thymidylate kinase" + /protein_id="ACL74544.1" + /db_xref="InterPro:IPR000062" + /translation="MRKGLFITVEGTDGSGKTTQIKLMEQYLKDMGNEVVLSREPGGT + RISEMIRDLILDPENKDISPLTEMMLYAAARAQHVSQVIRPAIESGKSVICDRFVDSS + YAYQGCGRGVDLKTIADVNRAAIDGVVPDITFFLDLDPRVAMERRVKSTGADRIEQEK + MDFHIRVYEGYERMALLYPERIKTIDASKSIEEISSQINIYLKEIL" + gene 183026..183355 + /locus_tag="Ccel_0157" + CDS 183026..183355 + /locus_tag="Ccel_0157" + /inference="protein motif:PFAM:PF06153" + /note="PFAM: protein of unknown function DUF970; + KEGG: tte:TTE0095 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF970" + /protein_id="ACL74545.1" + /db_xref="InterPro:IPR010375" + /translation="MKLVFAIVHDEDGNRVMEELNKHGVSVTKMCSTGGFLKAGNTTL + LVGVDEEKLDEVIAIIEKKSKSRRQVINTPATSGGINGMFMPYPVEVTVGGATIFVVD + VEKFHKV" + gene 183373..183840 + /locus_tag="Ccel_0158" + CDS 183373..183840 + /locus_tag="Ccel_0158" + /inference="protein motif:PFAM:PF03885" + /note="PFAM: protein of unknown function DUF327; + KEGG: cth:Cthe_2106 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF327" + /protein_id="ACL74546.1" + /db_xref="InterPro:IPR005585" + /translation="MIPIPIKIQDSSESRANISALPSRDERTIRNERDTSFSNQLRKL + ETKNYEERVKVLADKIESQGKKLGKKTDIRELKVYKQLISDFLDEAVSHSHSFMKKNF + LDRRGRHRIYAIIKKINEELVELTNEVLKSQKDNISILKKLDDIRGLILDLFL" + gene 183856..184824 + /locus_tag="Ccel_0159" + CDS 183856..184824 + /locus_tag="Ccel_0159" + /inference="similar to AA sequence:KEGG:Cthe_2105" + /note="KEGG: cth:Cthe_2105 DNA polymerase III, delta prime + subunit" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, delta prime subunit" + /protein_id="ACL74547.1" + /translation="MLGHQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASM + LMCREDQFPCGECKSCQLYREASNPDFQEIIQKDKSISVEEIRNILKGLVIRPLYSDY + KVIIINDADTMTIQAQNALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRILFNRL + SHEDIMEIMESKYGPRQSDWEFIVSYADGVAGTALELAESPHSLELREEVLEFTSRLV + SDRDADPFKFYETFEKNNDRVDYILHVILLYFRDLLIYKETGDTSLLINSDKKDMIIR + NVELSFSHIIKCIQAVWDARRGLGNNANFQLAIEVMLMKIQKADNA" + gene 184857..185732 + /locus_tag="Ccel_0160" + CDS 184857..185732 + /locus_tag="Ccel_0160" + /inference="protein motif:PFAM:PF04468" + /note="PFAM: PSP1 domain protein; + KEGG: cth:Cthe_2104 PSP1" + /codon_start=1 + /transl_table=11 + /product="PSP1 domain protein" + /protein_id="ACL74548.1" + /db_xref="InterPro:IPR007557" + /translation="MVKVVGVRFKKAGKIYYFDPGELVIDLNQNVIVETARGIEFGLV + VVPNREVDESEIVAPLKKVIRVATEEDIAHAQENDRKEKDAFNICLQKISDHNLEMKL + IDVEYTFDNNKILFYFTADGRVDFRELVKDLASVFKTRIELRQIGVRDESKMMGGIGI + CGRVLCCNSFLGEFQPVSIKMAKEQSLSLNPTKISGTCGRLMCCLKYEQEAYEDLLSR + VPKVGAIVETPEGQGTIVDVMLLKEILTVRLDIGNESDLRVYNFKDGEIKVIKDAAAS + YDSDIDLEALKQLED" + gene 185841..186011 + /locus_tag="Ccel_0161" + CDS 185841..186011 + /locus_tag="Ccel_0161" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: cth:Cthe_2103 4Fe-4S ferredoxin, iron-sulfur + binding" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL74549.1" + /db_xref="InterPro:IPR000813" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MAYSINDACISCGACESECPVSCITAGDSIYVIDEDTCIDCGAC + ANVCPVDAPQQK" + gene 186078..186860 + /locus_tag="Ccel_0162" + CDS 186078..186860 + /locus_tag="Ccel_0162" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: methyltransferase small; Methyltransferase + type 11; + KEGG: cth:Cthe_2102 methyltransferase small" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL74550.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR007848" + /db_xref="InterPro:IPR013216" + /translation="MIRGVLLVTIRDKERIDDLQLHGLKLIQNTEKFCFGVDAVLLSD + FADVKRNSKVLDIGTGSGIIPVLLAGKTKAAKIVGIEIQEEMAEMASRSVLMNRLSDR + LEIVQGDIKLYREYFRKSSFDVVVSNPPYTNKGCGLVNPMDSKAISRHEILCSLEDVV + SAAAALLVPGGQLAMVHRPERLADIICSMRNNGIEPKHLRLVHPKPGKKPNLLLIKGN + RGGNPELKVMEPLYVYNSNGTYSDEINKIYGRAEEEKIERKG" + gene 186844..187692 + /locus_tag="Ccel_0163" + CDS 186844..187692 + /locus_tag="Ccel_0163" + /inference="protein motif:PFAM:PF00590" + /note="PFAM: Uroporphyrin-III C/tetrapyrrole + (Corrin/Porphyrin) methyltransferase; + KEGG: cth:Cthe_2101 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Uroporphyrin-III C/tetrapyrrole + (Corrin/Porphyrin) methyltransferase" + /protein_id="ACL74551.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR008189" + /translation="MSEKGKLYLVATPIGNLQDITFRAINTLKDVDFIAAEDTRQTIK + LLNHFEIKKPLVSYYEHNKLVKGNYLIEQLLSGKNIALVSDAGSPGISDPGEDLVRLA + IENGIEVTMIPGPVAAVTGLVISGLPAGRFVFEGFLPMNKRSRQERLQQLKNETRTII + FYEAPHKLSYTLKDIYNAWGDRRIALARELTKRFEEVIRCSLFEAMERFQTEAPKGEF + VVIIEGQDEALLVEQEREKYSEISIEDHVNRYVEEGLTKKEAIKKAAEDRGLNKRDIY + NAVMKK" + gene complement(187761..188000) + /locus_tag="Ccel_0164" + CDS complement(187761..188000) + /locus_tag="Ccel_0164" + /inference="protein motif:TFAM:TIGR01439" + /note="TIGRFAM: transcriptional regulator, AbrB family; + PFAM: SpoVT/AbrB domain protein; + KEGG: cth:Cthe_2100 AbrB family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AbrB family" + /protein_id="ACL74552.1" + /db_xref="InterPro:IPR006339" + /db_xref="InterPro:IPR007159" + /translation="MKSTGIVRKVDELGRVVLPIELRRTLDIAEKDALEIYVDEATII + LKKYEPACIFCGNAKDVIVYKGKNICPECMKELKK" + gene 188368..188955 + /locus_tag="Ccel_0165" + CDS 188368..188955 + /locus_tag="Ccel_0165" + /inference="protein motif:PFAM:PF07670" + /note="PFAM: nucleoside recognition domain protein; + KEGG: cth:Cthe_2099 nucleoside recognition" + /codon_start=1 + /transl_table=11 + /product="nucleoside recognition domain protein" + /protein_id="ACL74553.1" + /db_xref="InterPro:IPR011642" + /translation="MLNYIWIGLLMIGFAFGIVNGRLDAVTKAAMDSAQTAVNVCIGL + LGVMCLWTGLMKIAEKSGLIRIIGRAVRPVLGFLFPEIPKDHPALGAIVMNLVANFLG + LGNAATPLGLKAMKELQSINRDKRTATNAMCMFLVLNTAAIQLVPASIIALRTSEGSK + KPAEIIVCIWIASVCATIMGIIASKLLSLVWKKDN" + gene 188971..189501 + /locus_tag="Ccel_0166" + CDS 188971..189501 + /locus_tag="Ccel_0166" + /inference="protein motif:PFAM:PF07670" + /note="PFAM: nucleoside recognition domain protein; + KEGG: cth:Cthe_2098 nucleoside recognition" + /codon_start=1 + /transl_table=11 + /product="nucleoside recognition domain protein" + /protein_id="ACL74554.1" + /db_xref="InterPro:IPR011642" + /translation="MIFIRHLSDFAVPAIFIVIIGVAVLKKVKAYDVFVEGAKDGIDT + IIKIIPSLVGLLVAVGVFKASGAMDSLILLLRPLTDLLGMPPQVAPLALLRPISGSAS + FAFVTEIIKSFGPDSYAGRVAATMMGSTETIFYTLAVYYGSVGIKNIRYTLIAAIMAD + IISVIASLWACQFIFG" + gene complement(189498..190556) + /locus_tag="Ccel_0167" + CDS complement(189498..190556) + /locus_tag="Ccel_0167" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dsy:DSY2213 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74555.1" + /translation="MKNIIDCIRFTNRYAKKIHPVVQKRSQEYYNYTGRIVKYKLKRN + AKEALKESQFDMAVSSVCTLWPGVNVKLASEVIFSFLAIVSYLNKMCENSAVVTEAFI + RVIFSSLKDAANIRNESFEKYFTFFPSKDDNGYLSILVEKCRQKIQLLPSFNIVRDNI + SAFLALYIDLQVTKYSSNDNEKEVNLIRWSSAHGQKYPELSNWEFCMCIDSGLDIQLL + LALATNPDLTEEDVDSIHTAFFPWVSCIHKILECYLKYNDDLSTGSLNYIFYYGSLKE + YEDRIEFFTNKSLSVKTKYRGNVKSVLKILLSLFTTDPKANEGMNSITSKSLYKTGGK + GMWLYSLSAKILRALNKF" + gene 190808..191575 + /locus_tag="Ccel_0168" + CDS 190808..191575 + /locus_tag="Ccel_0168" + /inference="protein motif:TFAM:TIGR00010" + /note="TIGRFAM: hydrolase, TatD family; + PFAM: TatD-related deoxyribonuclease; + KEGG: cth:Cthe_2095 TatD family hydrolase" + /codon_start=1 + /transl_table=11 + /product="hydrolase, TatD family" + /protein_id="ACL74556.1" + /db_xref="InterPro:IPR001130" + /db_xref="InterPro:IPR015991" + /translation="MIFDTHAHYDDEKFDEDRDGLLQELYSNGIGYIVNASADINSLD + ASIELSGKYDFVYAALGIHPHYADQINDEVIERIKKLCKNSKVVAIGEIGLDYYYDNS + PRDIQKHWFERQIELAKELELPIIIHDRDAHEDTLNIIKKTNAQQVGGIFHCFTGSRE + MALDVLKHNLYIAVGGAVTFKNSRRIKEVVEAVPLDRLVIETDCPYLTPEPYRGKRNN + SGYLIHIIEKIAEIKGVSSEEIEEATLINAKKVFKLV" + gene 191627..192322 + /locus_tag="Ccel_0169" + CDS 191627..192322 + /locus_tag="Ccel_0169" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: viral A-type inclusion protein, putative; + K02331 DNA polymerase phi subunit" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74557.1" + /translation="MKRFIIIIVFLFLIALLISFNYLLWDREKQLENFQDLRDAKNFT + IDTLGEKNNALDKKNRELTEKIDSLNLAISDLKDEFNRLSVENTDLKNQVSDYADLIN + QFKKNMNTMPINGLIKNWFEAINTKNYKVASALISKNSHDEILNNPANFSKTYQEEIK + SINLKSLHIFTDLSDQEHLGKIQFRIITEVEKPESQQTDKLYKSGDNEKYITVEFNTQ + SKEWLILEVSDKP" + gene 192562..193632 + /locus_tag="Ccel_0170" + CDS 192562..193632 + /locus_tag="Ccel_0170" + /inference="protein motif:PFAM:PF06725" + /note="PFAM: protein of unknown function DUF348; 3D domain + protein; G5 domain protein; + KEGG: cth:Cthe_2093 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="3D domain protein" + /protein_id="ACL74558.1" + /db_xref="InterPro:IPR007137" + /db_xref="InterPro:IPR010611" + /db_xref="InterPro:IPR011098" + /translation="MTPIAKNIKRYFSELKIRSLDVAIVCIVVVISVTAGFLVFNGLN + RHVVINDNGHTIAVKTMRTTVKEVLEQTGIKVDKADYISMPFDAKLTKIHQNVINIKR + AVPVSIKVDGKELDVKTCKDTVSEVLKDNNISVDSDDKFVGSQLGDKIVSNMKISIVR + VEEKTITETLPIPFKTITKENKRLDKGVRNTVRQGKEGVREKLYKVVFEDGKQTTKQL + IKDFVATNPLNCIVEVGTVLNYNTARGETIRFSKVLDMRATSYTASFKDTGKRPGEPG + FGITATGAKVRRGIIAVDPRVIPLGTRVYVEVPGKAADYGYAVASDTGGAIKGNKIDV + YLESGSQVDAWGVKKVKVYILK" + gene 193822..194694 + /locus_tag="Ccel_0171" + CDS 193822..194694 + /locus_tag="Ccel_0171" + /inference="protein motif:TFAM:TIGR00755" + /note="TIGRFAM: dimethyladenosine transferase; + PFAM: ribosomal RNA adenine methylase transferase; + KEGG: cth:Cthe_2092 dimethyladenosine transferase" + /codon_start=1 + /transl_table=11 + /product="dimethyladenosine transferase" + /protein_id="ACL74559.1" + /db_xref="InterPro:IPR001737" + /db_xref="InterPro:IPR011530" + /translation="MIKNNTSEIIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKD + TLAIEIGPGVGSMTRELAARSAGVAAIEIDKRLIPALNDNLSDYSNVSIINEDIMKAD + IDTIINKYREVYNAKSVKVVANLPYYITTPIIMRFLEEVKGVDKMVFMVQREVAERMV + SGPGTKDYGALSVAVQFYSKPEIIFDVPPHCFIPQPEVHSTIIGLDILSEPPVEVIDR + NLYFKIVKASFGQRRKTLVNALSNSGFFNKTKEQIKQILKEMGKSENIRGEVLTVAQF + AQLSNLMINEHQKD" + gene 194789..196132 + /locus_tag="Ccel_0172" + CDS 194789..196132 + /locus_tag="Ccel_0172" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2091 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74560.1" + /translation="MGNAYERQYHIFKTMDNNWENPSGFIKVEINDDNTRFQLSLNNL + SDNKDSTYSLYGIQKDNSTLEYTDICRILPVNGRVDIKTNFSSDEIGSNKLNVHDINI + FAVIYRSTDKSSGTVKCPLVAYAKGEQVWKGEFERVLEQPSLKIEASAAAIDADDTAE + IPVAIQNEKNDEPETEDINIQSWTVLDDEYSKNPIELLESEGTEREQENIETYVSEEV + SGQENIESYVSEEVSGQETDISDLSSKFQGDLSSVYQDSFEGEMEENDESGDNSQETG + EVQDVWKKIQDDFNDISSIRIDESANMDKSETDIEHPLNIQLLKQELDNSFEEFNPFK + TRNRSYKWWKINSPGFLNNILFRNNIKTYLLFNPKVMLAHYKYRYIILGLRNNRQPQR + ERLICGIPGVYNIDDNPFGSEGSWVQMEGYRPKYGAFGYWIVTLDPRTGKISKMK" + gene 196207..196605 + /locus_tag="Ccel_0173" + CDS 196207..196605 + /locus_tag="Ccel_0173" + /inference="protein motif:TFAM:TIGR02481" + /note="TIGRFAM: hemerythrin-like metal-binding protein; + PFAM: Hemerythrin HHE cation binding domain protein; + KEGG: gsu:GSU2929 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hemerythrin-like metal-binding protein" + /protein_id="ACL74561.1" + /db_xref="InterPro:IPR012312" + /db_xref="InterPro:IPR012827" + /translation="MAIKWRDSLAIGITEIDDQHKKLFEAIDKLFTACVQGKGKEEVV + NTIKFLEDYTIVHFNDEQEMHKKYNYPERDAHRKIHDNFLNSFSKLKEQFEQEGAGPL + FISTINKQVVDWLIQHIGKADKAFAAYVKG" + gene 196730..197167 + /locus_tag="Ccel_0174" + CDS 196730..197167 + /locus_tag="Ccel_0174" + /inference="protein motif:PFAM:PF05164" + /note="PFAM: protein of unknown function DUF710; + KEGG: cth:Cthe_2088 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF710" + /protein_id="ACL74562.1" + /db_xref="InterPro:IPR007838" + /translation="MTAKNKVVIRIAGKDYTLVGSEPDEYIHKVGLYIDKKMNEIMLR + NSRLSTSFAAVLTAINVADDYFKSKAEEISLGKEKDELVNETEKLKCEIEQLREQNEE + LVAKNTSLQVELAKREAELGEVRNSISKDNRVIAQKSLAGYDI" + gene 197310..198203 + /locus_tag="Ccel_0175" + CDS 197310..198203 + /locus_tag="Ccel_0175" + /inference="protein motif:PFAM:PF01676" + /note="PFAM: metalloenzyme domain protein; + KEGG: cth:Cthe_2087 metalloenzyme" + /codon_start=1 + /transl_table=11 + /product="metalloenzyme domain protein" + /protein_id="ACL74563.1" + /db_xref="InterPro:IPR006124" + /translation="MKVIFTFLDGVGIGEKDRMANPVYATEQQILAQLIDNAKFQADA + SMGVDGLPQSATGQTTIFTGVNAPKILNRHLSGQPTISLKKVIYKSNMFSELIKRGFN + VTSSNVYKDEYLKNMLNSKDRKNRPSVTSVMCMASGIDFRTLSEFINGDGVYHDITGD + ILKESGCRIETVTPQKAAQNLYKLSRNYDFTLYEHFLTDIQGHKADFYEAAKLIDRLD + SFLDELIKQMDFEEDVLIITSDHGNIEDISIHTHTMNKVPVIVLGKKAEKVKTEIHSL + IDIMPFVLELFSGNRRGSEVT" + gene 198225..200732 + /locus_tag="Ccel_0176" + CDS 198225..200732 + /locus_tag="Ccel_0176" + /inference="protein motif:PFAM:PF01136" + /note="PFAM: peptidase U32; + KEGG: cth:Cthe_2086 peptidase U32" + /codon_start=1 + /transl_table=11 + /product="peptidase U32" + /protein_id="ACL74564.1" + /db_xref="InterPro:IPR001539" + /translation="MAKKIELLAPAGTYDAFLAAIENGADAVYLGGKLLNARQFAGNF + DDDQLERALDYAHTRDASVFLTMNTLVLDSEMQEAVEYVAKAYENGVDAFIVQDLGLA + ANLKKLIPGITLHASTQMTVYSTEGINALDSLGFGRTVLARELNLEEIKKICRQTPLE + IEVFVHGALCICVSGQCYMSSMIGGRSGNRGKCAQPCRLPYSIKRDSSEFDSGYLISP + KDICYIDHLSDLIDAGVTSLKIEGRMKSPEYVATVVGTYRKYLDLIYEKRDLSPSISS + RHKVEQEDRHKLLQSFNRGGFSKGYLLGKTGPEMMAYEKPKNWGTPLGNVVSQDRNTN + SVLIKLENTLGMGDGIEIWSGSKFQESPGGIITKIVKDKKLVRKAHKGDTVWVSVIKG + KVQKGSRVYKTSDKEMLEQAAATYSKAGRKSPIKASFTMKYGQVPALTLQDAYGNIVS + AVGEQFPQKAINKPLTKDRILEQLKKMGSTPFNIAEITLDLDEGAVIPISELNNIRRS + AGEQLEQKRILSLKKESVNFDKRTFKSISYFPGNVQKINIDTKIAAMFYDYPDGMDFG + DLDVDRVYLPFTEIMGNEGLLRAKHIHETGRELYAYIPAVIRGHYTDILKKNLKNVSQ + TVDGFLAGSPAVFEIIREKLGNSVPVVGDYTINIINSYSLNKLKELGFTGGTLSCELN + LSQITELKYPADFDTELVIYGKIPVMTSEYCPIGGSVGKCEPRKCGKLCKKGVYRLSD + RKGVEFIVKSDCIDCRSTIFNSNVLFAPELSEQISRTGVNYFRLSFVDEGKKDIHNIC + ALYRSLLEHKKTEPDMEKLIERVKASGFTKGHLQKGI" + gene 200770..201273 + /locus_tag="Ccel_0177" + CDS 200770..201273 + /locus_tag="Ccel_0177" + /inference="protein motif:TFAM:TIGR00576" + /note="TIGRFAM: deoxyuridine 5'-triphosphate + nucleotidohydrolase Dut; + PFAM: deoxyUTP pyrophosphatase; + KEGG: cth:Cthe_2085 deoxyuridine 5'-triphosphate + nucleotidohydrolase" + /codon_start=1 + /transl_table=11 + /product="deoxyuridine 5'-triphosphate nucleotidohydrolase + Dut" + /protein_id="ACL74565.1" + /db_xref="InterPro:IPR008180" + /db_xref="InterPro:IPR008181" + /translation="MSVEIFLEICRKDTVLPKYANPGDAGMDVYAAESVMIAPGETVV + VPTGLKVAIPEGYEIQVRPRSGISFKTPLRVPNSPGTIDSGYRDELGIIISNSSDIDV + PDNRETPYTLEEKENRKGTYIIRKGDRIAQIVLQVVPKMKFTVVDSVREIGSDRGGGF + GSTGVAR" + gene 201303..203093 + /locus_tag="Ccel_0178" + CDS 201303..203093 + /locus_tag="Ccel_0178" + /inference="protein motif:TFAM:TIGR03156" + /note="TIGRFAM: small GTP-binding protein; GTP-binding + proten HflX; + PFAM: GTP-binding protein HSR1-related; + KEGG: cth:Cthe_2081 small GTP-binding protein" + /codon_start=1 + /transl_table=11 + /product="GTP-binding proten HflX" + /protein_id="ACL74566.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR016496" + /translation="MKVNGNIQSIKDKVLQELEDLYDKKYGSRDLVPEELALTITRIS + AEINREISVLLNRRGVVVDISIGDSGTVTLPQVDGRRGTARLSAIRCIHTHPNGSGML + SQVDASTLQKLRLDAMIAVGITDGQPSDIYAGCLNHEEGVDIYGPFEIRDTRLNYIYR + IIEELDASAKNEIYENEEEAETAILVSLETSQSRLENITSRDAQESLEELEELAKTAG + AVVVDKVLQKKQTEDSAYYIGKGKIEELSLMCQARDVQLLIFDDELSGAQIRNIEEMT + KVRVIDRTTLILDIFAQRAVSKEGKLQVELAQLKYKLPRLVGMGTELSRLGGGIGTRG + PGEKKLEVDRRHIRRRITGLEQELKHLEKRRQFLRSNRTSNNTPVVAIVGYTNAGKST + LLNRFCGSSVFVEDKLFATLDPSARQLTLSDGREAVLIDTVGFIRKLPHDLIEAFKST + LEEAVHADMLLHVVDASNENVSMQISVVEKLLEELGASTKRTILVLNKQDLVQEDRRI + SSVGYSAVCEISAVTGYGIEQLLEKITEGFMHQLKEVQLLVPYNDGWVMPYIYKNGRI + IDQEYEEGGIKVKALVKVEKVSRLTDFMVV" + gene 203169..203582 + /locus_tag="Ccel_0179" + CDS 203169..203582 + /locus_tag="Ccel_0179" + /inference="protein motif:PFAM:PF00293" + /note="PFAM: NUDIX hydrolase; + KEGG: aoe:Clos_1784 NUDIX hydrolase" + /codon_start=1 + /transl_table=11 + /product="NUDIX hydrolase" + /protein_id="ACL74567.1" + /db_xref="InterPro:IPR000086" + /translation="MLVRNCAGGVVFSGDKVFLLKNEKDEWVLPKGVIRSGDYPDEVA + KRRVKEETGIDAEIVLAAGNTNYEFFSVTRQRPVCNKITWYVMKSLNDNFEINKGENF + SEGRYFSIDEALEKITYSQDRALINLSYAKYKQLA" + gene 203708..204358 + /locus_tag="Ccel_0180" + CDS 203708..204358 + /locus_tag="Ccel_0180" + /inference="protein motif:PFAM:PF01205" + /note="PFAM: protein of unknown function UPF0029; Domain + of unknown function DUF1949; + KEGG: cth:Cthe_2078 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0029" + /protein_id="ACL74568.1" + /db_xref="InterPro:IPR001498" + /db_xref="InterPro:IPR015269" + /db_xref="InterPro:IPR015796" + /translation="MLTEYKTILNTAEAEFEEKKSRFIANVRPITCEEEALEFIEEMR + SKYWNATHNVYAYSINNGTLVQRYSDDGEPSGTAGMPTLEVIKRMGLQDVVVVVTRYF + GGTLLGASGLIRAYSKGASLGLEAAEIVTRKLCYNLNIIIEYTIFGRLQNMLISNNNI + IKDIRYEQDVELCVLIEVGNEEELMKDIVEVSNGRAVIDLGEKTYITLGSDGRLII" + gene 204453..205199 + /locus_tag="Ccel_0181" + CDS 204453..205199 + /locus_tag="Ccel_0181" + /inference="protein motif:PFAM:PF01709" + /note="PFAM: protein of unknown function DUF28; + KEGG: cth:Cthe_2075 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF28" + /protein_id="ACL74569.1" + /db_xref="InterPro:IPR002876" + /translation="MSGHSKWANIKRQKGAADAVRGKIFTKLGREIQIAVRMGGADPS + SNSKLKDVIAKCKANNMPNDNIQRSIKRASGETDGSNYEEITYEGYGPGGVAVICECT + TDNRNRTAGDLRHYFDKFGGNLGQSGCVSYMFNKKGVIVIEKNDKVNEETLMMEALDA + GAEDFDSDDNCYEIITDPADFSTVREALEAKGYEFIEAEVSMIPTTTTKLTDPEQIKF + MDKLIEALEDLDDVSNVYHSWEQDEENEEE" + gene complement(205368..205874) + /locus_tag="Ccel_0182" + CDS complement(205368..205874) + /locus_tag="Ccel_0182" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74570.1" + /translation="MLNQVNKLIHKKYFVNSIIILLLLVSLYLVILNNNKSHLIEENY + AKQQLIDKNFINYLSQTQSDFGADFFKIQQIDVRKKLYSQCLIDLSSAFSLAEYTTYD + NTNSSIDVTLYSLLRAMQDDDTSVQIMKDSKKIFYMLKDILYAPSDSTKLKPLSDYLD + MLNKKYKY" + gene complement(205992..206996) + /locus_tag="Ccel_0183" + CDS complement(205992..206996) + /locus_tag="Ccel_0183" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: chy:CHY_1887 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74571.1" + /translation="MKERANLLIRNLVLVVISIILTSTIVFAQTETNSLEQAKDNMRT + LGFSEKIINDLSDNEIMEYLNAKLVSKTEEYYTYEYSSTFNSVTKKNDVKLVKRQKVS + KEDAYKIAEKENGENLQSKVDILTKVNDPDAITTFGFNNSYNSNTISTLKLQVWATYI + SGTTYKIATQFDWLTHPSQCYYDMLALSNDGKSTKQQNTSSFFVKSDIYKKDIYGNST + FYTTENVVSTTTSPFKEEVTGVGYKYEVPTETYGPPISSREWYERQDLRGYLTYKISV + PTTKQSYGVLGSYGHETQSLTWSNSVGVSFPAGISFSSWPSASSKITTSTVYTNFDVN + " + gene complement(207447..208730) + /locus_tag="Ccel_0184" + /pseudo + gene complement(209184..210080) + /locus_tag="Ccel_0185" + CDS complement(209184..210080) + /locus_tag="Ccel_0185" + /inference="similar to AA sequence:KEGG:Csac_0632" + /note="KEGG: csc:Csac_0632 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74572.1" + /translation="MKKFPIIILLLLLTACANTEPAQTTKSMVSEPMQASAKTSDTIE + KRENLINVNGKTVSERIRVPTDFERIKVDKTSFCQYLRDLPVKPDGTKIKLYNGNVTE + KDVHVAVLDIDVGNRDLQQCADAVIRLRAEYLYSQGLYKRIHFNFTNGFNADYWKWMN + GNRIVVKGNKTYWVKNTKSSNEYSSFRKYLDIVFAYAGTLSLSKEMKKESIENMQIGD + VFLKGATPGHTVIILDMAENKVTGEKIFLTAQSYMPAQSIHILKNPENENLSPWYSTN + FGNTLKTPEWDFDKSQLMRFEN" + gene 210243..211601 + /locus_tag="Ccel_0186" + CDS 210243..211601 + /locus_tag="Ccel_0186" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; transcription activator effector binding; + KEGG: bld:BLi00678 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL74573.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR010499" + /translation="MNYYERIQKSIDYIESNVENKINIDFAAQTAFMSLSNFYRMFFA + LTGYSVKEYIRLRRISLAAIDIQGTDTCLIDIAIKFDFESGDSFSRAFKRITGFLPSD + YRKKKSLYKFERIDIMEKYFDIQDKELIENYPDIKVLKEMEPTRVAYFCYYGKQPEHH + AFTVMAQWLNKNGLNVNEQNLRIFGYNNPSPASPDEEEYGYEVCATVADNIVVNDDLV + KEKVLGGGLYAVTNVRRGQDGDIGGEIIKAWSRFNNWLSDSKYVYGGHQWLEEHLGFD + DNANHIGGIDLYMPIALKSKDYDITKIFDNVEPMLTATYTATGKDADVKARDFFFKWA + DSQGFFNDTKPHRFFAYYDHERIGHNDFFYKIHVTVDREFSTDNPYIKLEEFKGGYYA + ITKAKYSYNGWAWGEFLKWLSKNKEFDLGNYWFFEEYKLNKPELDMDTEVVLHMPIKQ + KE" + gene 211614..212171 + /locus_tag="Ccel_0187" + CDS 211614..212171 + /locus_tag="Ccel_0187" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: lbl:LBL_1122 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74574.1" + /translation="MCIRITLIFENIYDEVSINSVAKSYDRRFKIVNNPIILSQLPDG + ERWFESAYSSCECSTGIGSFELFTRNVENVIEQLKDKSIAEEVRTEEVKRKSMYKKDV + DNWGEFIKSLIRKYNFKRVGLLMHFTDDDLARADFLILDKYVVKYSDINPEVLMKIKN + ELYIILWIIKLVKAKQIKVRNIREG" + gene 212178..212768 + /locus_tag="Ccel_0188" + CDS 212178..212768 + /locus_tag="Ccel_0188" + /inference="protein motif:PFAM:PF05175" + /note="PFAM: methyltransferase small; + KEGG: cpy:Cphy_3378 methyltransferase small" + /codon_start=1 + /transl_table=11 + /product="methyltransferase small" + /protein_id="ACL74575.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR002296" + /db_xref="InterPro:IPR007848" + /translation="MSAIRLIETEIKGIKMKFKTSGKVFSPQNIDRGTLAMLSLADFK + EGDKVLDLGCGYGVVGILASKIVGPENVIMTDVDENAIKLAIENALINSVDSIKILKS + DGFKELKESGFSIILSNPPYHTDFSVAKEFVEKGFNRLIVGGRMIMVTKRKDWYKNKL + TSIFGGCKACEIDGYFVFVTEKRETTYAKVKSKKVK" + gene 212840..213262 + /locus_tag="Ccel_0189" + CDS 212840..213262 + /locus_tag="Ccel_0189" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74576.1" + /translation="MNKKIVVIVTITILIAIAGIKYFKLLDMPVHKNINKEDVLSIES + WSDTHGITEIKDPVLFDNIVTWFNNSSDIRENPEFAGTTPAVGINIKLKSGKGISILE + GAIDFEVQRNDVRDKNVSYFAKQKDIAKYLDNLFTGVK" + gene 213263..213646 + /locus_tag="Ccel_0190" + CDS 213263..213646 + /locus_tag="Ccel_0190" + /inference="similar to AA sequence:KEGG:Cbei_3830" + /note="KEGG: cbe:Cbei_3830 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74577.1" + /translation="MTEKRPIIITIIGDLSILAAMLSIGVTIFPDYFSKLGFHHNTLP + IYSNSVMNILLSFVLITAAAGYLNLKKWGYWLMIIYNIFLMLVNVIWRLQNKQIPFTT + GIIVLSIVLMNTIRYRKYFILGAEA" + gene 213695..214720 + /locus_tag="Ccel_0191" + CDS 213695..214720 + /locus_tag="Ccel_0191" + /inference="protein motif:PFAM:PF01661" + /note="PFAM: Appr-1-p processing domain protein; + KEGG: blo:BL0806 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Appr-1-p processing domain protein" + /protein_id="ACL74578.1" + /db_xref="InterPro:IPR002589" + /translation="MPFIIVRQDITKLKVDAIVNAANTDLRMGGGVCGAIFKAAGAAQ + LQAVCDKLAPIKTGEVVITPGFNLSAKFVIHAAGPVYRHWNREQGEQYLRAAYTNSLK + CAVENKCESIAFPLISSGIYGYPKDEALRVATSEIHNFITDHDIDVTLVVFDKSAFTV + SRKLLGAVESYIDEHYANTHQFKRRQLLDVEREALYEADESVGIYSEPVFQKTLSPSV + GAPLDNLVSNLDESFSKVLLRLIDAKGKTDVEVYKRANLDRKLFSKIRSNKGYMPSKR + TAIALAVALELSLDEADDLLKCAGYALSHAVKFDVIVEYFIVNGKYDIFEINEVLFKY + DQPLLGG" + gene 214731..215426 + /locus_tag="Ccel_0192" + CDS 214731..215426 + /locus_tag="Ccel_0192" + /inference="protein motif:PFAM:PF03358" + /note="PFAM: NADPH-dependent FMN reductase; + KEGG: cbh:CLC_0982 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="NADPH-dependent FMN reductase" + /protein_id="ACL74579.1" + /db_xref="InterPro:IPR005025" + /translation="MKVVVLHGSPRKGNTYLATSLFLDELRKCGGVDVVEFFLQRAMP + EFCTGCQLCLGNPNEKCPHARYVTPILDAILKADALIFTTPHFGACSMSGIMKNLLDH + LDFLTMNVSPRKEIFRKKAFVISTGAGSTAAIKPIKSYLKNWGINRVYTCGIRMFTNK + WSAMPVAKQRKFERMLCKAAQHFYAVPKRHPYLSTVFMYYMSKFILKKFVGVGNYPYE + YWNKNGYFTKCPF" + gene 215517..216170 + /locus_tag="Ccel_0193" + CDS 215517..216170 + /locus_tag="Ccel_0193" + /inference="similar to AA sequence:KEGG:FN0557" + /note="KEGG: fnu:FN0557 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74580.1" + /db_xref="InterPro:IPR002035" + /translation="MRKGLTELVFILDKSGSMSGLETDTIGGYNSMLVKQQEVEGECH + ITTVLFDNNYELLHDRIDIRAVSPITEKEYQVGGSTALLDAIGRTIHKIGNAQRQTAE + DYRAENVMFVIITDGEENSSREYSAEKVKVQIERQKTKYGWEFIFLGANIDAVQTAGR + FGIAPERAVDYLADSKGTELNFKVMSAAVATFREAGMVDEACFEEIRQDVKQRGLRK" + gene complement(216405..216496) + /locus_tag="Ccel_R0004" + /note="tRNA-Ser5" + tRNA complement(216405..216496) + /locus_tag="Ccel_R0004" + /product="tRNA-Ser" + gene complement(216647..217933) + /locus_tag="Ccel_0194" + CDS complement(216647..217933) + /locus_tag="Ccel_0194" + /inference="protein motif:TFAM:TIGR00277" + /note="KEGG: cpo:COPRO5265_1350 metal dependent + phosphohydrolase; + TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL74581.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /translation="MDQYIPIIDIVIALSSAIDLINPNISNHHKRVAYISYSIAKEMG + FPENEIKDLVLAGLLHDCGAVNLFERSSIFEFEFGNSYSDRHSHGYKGWYILRDAAEL + SKAAEIIKYHHVFWNEISHKRYVSSKVPKFSHILHLADRIDVLINPNQEILGQRKYIS + KKIHNGKDKMFMPQAVDAFENLISKPYFWFDITSVYLENHIRKIMSPYKVFINSELLI + QYANIAHRIIDFRSKFTATHSIGVAASASALASKLGFSSCDTRLMHSAGLMHDLGKLC + IPESILEKRGPLDQYEFNLMKAHTYHTYRIIDSIPGLEKVRDWAAFHHEKLDGTGYPF + GLDYRSLDLGSRILSVSDMFTAMAEERPYRHAMSLKDTVKLINGIKTLDYDVKYCLNQ + NIEEINEIRRTSQEIVFQSCNEIFPDFDEELNLHAL" + gene 218139..218852 + /locus_tag="Ccel_0195" + CDS 218139..218852 + /locus_tag="Ccel_0195" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpy:Cphy_3008 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74582.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MLTISNLSKTYKGGKRAVDNLTLEIQKGDIYGFIGHNGAGKTTT + IKCVAGILEFSEGDILIEGKSVKTNPLECKRMIAYIPDNPDLYENMTGIQYLNFIADV + FSISANEREKSIKEYADMMELTESLGDLISSYSHGMKQKLAIISALVHNPSLYIMDEP + FVGLDPKAAHTLKEVMKEKCRQGSAIFFSTHVLEVAEKLCNKIAIIKDGKLITSGETD + SVRGNSSLEQLFLELIDNE" + gene 218845..220443 + /locus_tag="Ccel_0196" + CDS 218845..220443 + /locus_tag="Ccel_0196" + /inference="similar to AA sequence:KEGG:CD2104" + /note="KEGG: cdf:CD2104 putative ABC transporter, permease + protein" + /codon_start=1 + /transl_table=11 + /product="putative ABC transporter, permease protein" + /protein_id="ACL74583.1" + /translation="MNSIFLLIKANIINSWGINKALKSKSMSEKIKTVLLGLLIVYAF + CMLAFSMFMLNYSLGNILEELNSLELLIASSILSTTLFSLFISIYKIPGHLFSFKDFD + LLMSLPVKPSAVLASKMIFVYLSNLAISVLVGGPSLVTYGIKTHSGFMYYIFAFLATL + FVPLIPITIGAVFAYILGRISSKFRSTNTLMLIGSFILIAVFMVLPNMLAGVNQDQVQ + NAIPSISGVTKVLFWTNLYIKALSNTNILYLAAFLLVSAAVFGIFITIFSRGFKTINS + KMSEKYKASDYKITRLKASSVMKALYFKQLRFYLSSYIYVTNTAVGVIMMLIFSLAVA + VFGKEEVAKVLELPMADAYLAPLVALIFGFCISFTFVTAASISLEGKSLWIIKSLPLK + IESILWSKILLNLTLTIPALVINTVIVAVSFKLGAETVSVLFLVSLLFSIVCPIIGIL + VNLFFPKLEWTSQVSVVKQSASVFVTMIINVILLGVPLVVFILIKPSNTNLFMELVSV + VLAILVFILIKVLNTVGVKKFKEL" + gene 220495..221310 + /locus_tag="Ccel_0197" + CDS 220495..221310 + /locus_tag="Ccel_0197" + /inference="protein motif:PFAM:PF06541" + /note="PFAM: protein of unknown function DUF1113; + KEGG: cpf:CPF_1398 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1113" + /protein_id="ACL74584.1" + /db_xref="InterPro:IPR010540" + /translation="MDVFYEFIIFLTIYSFIGWVCEVIYCSILSRKIVNRGFLAGPVC + PVYGFGAMFVVFLLKPADSGIIVIFLTGLALTSILEYITGWLLEAFFSTKWWDYSNNR + FNLNGRVCLKNSVLFGIMCVVLVKVLHPAITHVVALIPEIWVRVSGIVLIAAFAIDIL + LTVNTLLNLHDRLKKLHEFTEDLKKNGEILEWFNERELFKSFEKLRLLAEESKNELNL + RLREKFETLSQKRGSGQRLIKAFPNMKSIKYQVQLDHLKYILKQLRERAGGKH" + gene complement(221322..222926) + /locus_tag="Ccel_0198" + CDS complement(221322..222926) + /locus_tag="Ccel_0198" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: csc:Csac_0684 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL74585.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MTDNPLKVMIVDDESNTRDLLKLLIDWDGLGMEAAGDATSGLEA + LDMLDELNPDIVITDIQMPYMDGLTLSKNIKERHPDISIIILTAHDEFAYAQNAVSLG + ASDFILKPVNKDTIFETLSKVGNSIRSTRERLGRLELSHQYMQSNIMVFQNKVLNDLV + LNRNFTFQPHELKMMEIRFDTDYNLYQVSLINVGIEKNRYTNLERQMLLENCCNYIRD + FYFKKGLAYVFTDIQSNIVLLNNDSSISLSDISEHASLYFREQFSVSVSCGIGLEVHA + LDNVYKSYHQALNALNMCYITGEEITYADSQASEAENDTAFDRSFLTDNMKLAIKSGA + TSQALEITRKVLYNYTRENINDLDAVKIFSINMCNYIKELLSEMKIPFTGTLSLSGDF + LLDIFKLEKYVDIEVTILGIVEKATDLITEALNNKSKSIVDEVKNYIDRNYSDNSLTL + KVVADKFYINSSYLSRIFKKGTGITFSEYLTKVRIDNAKSILKSQDYKAYQLAEMIGI + PDPNYFVKCFKKVAGISFAEYKLQKA" + gene complement(222919..224688) + /locus_tag="Ccel_0199" + CDS complement(222919..224688) + /locus_tag="Ccel_0199" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: cbe:Cbei_4963 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL74586.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MNFFKHFMETLKNIFLNIPIRSKMLIIFMAFMLFYVIISLVIYD + NVITNETLSQVRQRSYETTELIRTNINTMIDNTNNVSKMLTTNSLIRSYLKSDRPSRS + LSKTANDVMFNIHITFPNIDSIYLYDLHGSGLRTNKVLTISSVEDVKKAPWFDELIRL + NGGYKISINAENTLKTYSGKNLVSVMRVLNDLDSLRPIGVLILNISQDSIAEVINETS + ENGGSSFILLDADNNPVIENDSSYELYKPYFTGIADHEEIITIDNKKLLVFESVLPGT + GWKIINCTSLSFKSPGIRTLNVIYILFIGITVFLFIVASLFTASLITSPIKNLINSMQ + GVSNGVFKRVSYRTGNDEIGELKNNYNLMIMEIDQLIIKLLDEEKKKRKFELDVLNEQ + IKPHFLYNTLDNISYLALSGNNQAVYEAVNALGSFCRISLSKGSEVISLENEICQIQN + YLLLQKLRYGEMISDEYDIAPATSQIKILKNILQPLVENSIYHGIRPSGEPGFIKTSA + HINDDLLILSVEDNGIGMDEKEINSISDENLAGNQASFGLRGTIQRLKLYYGTNDIYT + VESSKYSGTKITLKIPLKEDKDD" + gene 224941..226266 + /locus_tag="Ccel_0200" + CDS 224941..226266 + /locus_tag="Ccel_0200" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cbe:Cbei_4964 extracellular solute-binding protein, + family 1" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL74587.1" + /db_xref="InterPro:IPR006059" + /translation="MNKVSVTKRGVALILAGALTVGMAACGKNTTNNNAAGTTNNAGG + NKAKNVEIKFSHIWGSAADPFTPAAKKVIEDYQTANPNVKIAVDTNENEAYKTKIKAM + AAANELPDIFSTWGGGFSQPFIQSKSVVQLDQYLTDDIKNKLVNGALTNVTYDGKVYG + LPFFLSVGAMFVNTELFDKNGVKVPTTWEELLTAVKTFKAKGITPMAVSGKDKWTIAM + YFDVMALRAAGPEKVTKTLTKQGSFKDPEFLNAANRFKELVDAGAFSKGAAGVSNDEA + EVPFFEGKIPMMFKGSWTAGKAGSKDSKVAGKVKAISFPSIPGGLGNPKQFTGGAVDA + VMVSENSKNKEEAIKFQIYFAENMAKESYLSGASMPAWKTDVDESKVNPSLVDVVNLT + KDAESYTIWWDTLLAGKDTETYLNALQELFMGTKTPQQFVNSLQTIYGK" + gene 226370..227254 + /locus_tag="Ccel_0201" + CDS 226370..227254 + /locus_tag="Ccel_0201" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: oih:OB0775 sugar ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74588.1" + /db_xref="InterPro:IPR000515" + /translation="MVDKVLGNKKAIVFFLFPALVIFIGLIIVPIIMSTYYSLQEWSG + FGKGTFIGLQNYKGLLSDPIFIKAAVNSLILAFASVFIQLPISLLLALTLAKGVKFEK + SFVTIYFIPVIISTVVIGQLWMKIYNPDYGILNLFLKNIGLGSLASEWLGDPKRALTA + TFIPIIWQYIGYHMLLMYAGIKSISTDVFEAAVIDGSSWWNTSMKITIPMLKPVLNVS + VIFAVTGALKVFDLVYVLTGGGPAHASEVIGTYMVSTIFKGNQYGYGSAMAIFVILEC + FVLSILVGLLFREKGEAK" + gene 227251..228105 + /locus_tag="Ccel_0202" + CDS 227251..228105 + /locus_tag="Ccel_0202" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bha:BH3682 sugar ABC transporter (permease)" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74589.1" + /db_xref="InterPro:IPR000515" + /translation="MSDMVRGKITNFSISKILMYIALLIVAVIQLFPLYWMFSFSLKD + NSEIFGGNPIGLPGKWLWSNYSNALTQGNVGRYFTNSVIVTTVTILLTSIIAVMASYA + LTRMVFRIRKPLNSFFILGLTVPLHSALLPIFIMLRSLKMVNSYWALIAPYTAFAIPM + AILIFSGFMGSIPREMEEAACIDGCSIYKIFFTIILPLMRPAIATVTIFTFLQAWNEL + MFAVVFISDAKYKTLTVGIQSLAGQYTTEWGPIGAGLMVATIPTLIIYAIMSKKVQDS + LVVGAVKG" + gene 228204..230342 + /locus_tag="Ccel_0203" + CDS 228204..230342 + /locus_tag="Ccel_0203" + /inference="protein motif:PFAM:PF00933" + /note="PFAM: glycoside hydrolase family 3 domain protein; + KEGG: cbe:Cbei_4974 glycoside hydrolase, family 3 domain + protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 3 domain protein" + /protein_id="ACL74590.1" + /db_xref="InterPro:IPR001764" + /db_xref="InterPro:IPR002772" + /translation="MNKPKYLDKSLSFKERAVDLVSRMTLEEKASQLRYDAQPVERLG + IPRYNWWNEALHGVARAGVATVFPQAIGLAAIFDDEFLEKIADVIATEGRAKYNESSK + KGDRDIYKGITFWSPNVNIFRDPRWGRGHETYGEDPYLTSRLGVAFVKGLQGDGKYLK + SAACAKHFAVHSGPEDDRHHFNAVASQKDMYETYLPAFEALVKEAKVESVMGAYNRTN + GEPCNGSKTLLKDILRDDWGFDGHVVSDCWAIKDFHEGHGVTKTPTESVALALKNGCD + LNCGNMYLLILLALKEGKITEEDIDRAAIRLMTTRMKLGMFDDDCEFDKIPYEVNDSI + EHNKLSLEAARKSMVLLKNNGLLPLDSKKIKNIAVIGPNADSSLALRANYSGTPSHNI + TILDGVRSRVSEDTRVWYSLGSHLFMNREEDLAQPDDRLKEAVSMAERSDVVVLCLGL + DASVEGEQNDQGTVILDAGGDKADLNLPESQRNLLNAVLATGKPTIVALLSGSALSIG + DAADKAAAIVQCWYPGSKGGLAFAEMIFGDYSPAGRLPVTFYKSTEELPPFEDYSMEN + RTYKFMKGEALYPFGFGLSYTNFEYSNIVCPQAVNNGESLSVSVDVQNAGSVDSDEVV + QVYIKDMEASVRVPNHSLCGFKRIFLKSGEKKTVTFEIDSRAMTIVDEEGKRYIENGD + FTLYVGGAQPDNVSERLLGKKPLVASFNVK" + gene 230494..231060 + /locus_tag="Ccel_0204" + CDS 230494..231060 + /locus_tag="Ccel_0204" + /inference="protein motif:PFAM:PF02357" + /note="PFAM: NGN domain protein; + KEGG: cth:Cthe_1362 NusG antitermination factor" + /codon_start=1 + /transl_table=11 + /product="NusG antitermination factor" + /protein_id="ACL74591.1" + /db_xref="InterPro:IPR006645" + /translation="MKVTSDCVKKAVIGVHWYVLFVKSGREHRVEQYLKKIVGIDMIN + PFIPLHEFLFKISGTVKRELKPLFPGYVFIESDMAGQEFIRKLYNKIYLLSDIVRILK + YSDTEIAVRDSEKQMLLDLCNNEHCIESSRGVIKGDRIYITNGPLRGRESIIKKVNRH + KRQALVEMEFMGDKRLVSVALEIVEKVV" + gene 231266..233302 + /locus_tag="Ccel_0205" + CDS 231266..233302 + /locus_tag="Ccel_0205" + /inference="protein motif:PFAM:PF09334" + /note="PFAM: tRNA synthetase class I (M); + KEGG: aoe:Clos_1001 methionine--tRNA ligase" + /codon_start=1 + /transl_table=11 + /product="tRNA synthetase class I (M)" + /protein_id="ACL74592.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR015413" + /translation="MNNQKGKSNSPIEEFNVSDSRPKFPKRAVVTAGMPYGNKELHLG + HIGGVFIHADTYARFLKDRIGKENVIFVSGTDCYGSPILEYYRKLVSSGSFDGTIDEF + VTYNHKKQKEVLDSYQIDISIFAASALGRAAEIHEKVSSDFINKLYSNGHLKKITTSQ + FYDTELDVFLNGRQVVGQCPIAGCSSERGYADECSLGHQYMPVDLINPKSTLSGKKPE + MRDVTNWYFELDEFHDLLAQWVSQLEQDPSSRKFVIKSIGEFLEPPAIYVKRDHIEVL + DSIKDKLPEYELSDEKNKSSVLMVFKNLEEREAACLVLAENGIRFRTGKTLVPFRLTG + NVSWGVPSPVLEDMKDLTIWVWPESLWAPISFTMTYLENQKVATDTWKDWWCSKESQV + YQFIGEDNIYFYGPVEMAMFMGSQGKEVSANPPEGDLQLPKLICNNHVLFLSKKASSS + SEIKPPKADELLNHYTFEQLRAHFLSLGLGIKSVGFQPKPFNPKANEKDSDPVLKEGN + LLSNVFNRAVRSCFYTTQKYYDGKVPFAEVSSEILEESKKTILEYERLMFKTEFHLVM + SLMDSYIRNINKYWSKYIKQAEQDNDDELRTKVLVDSFHMVRTATVLMHPIAPSGTEM + ILEYLNLNEEFWNWDRIFDTIYDFMENPEKHKLKFLEPRVDFFEKHPSQIQAKN" + gene 233378..233488 + /locus_tag="Ccel_0206" + CDS 233378..233488 + /locus_tag="Ccel_0206" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74593.1" + /translation="MSKKQQPDQRKARVKTSAGQVPNPGQKANTEVNYPK" + gene 233567..234145 + /locus_tag="Ccel_0207" + CDS 233567..234145 + /locus_tag="Ccel_0207" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL74594.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene 234187..234987 + /locus_tag="Ccel_0208" + CDS 234187..234987 + /locus_tag="Ccel_0208" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74595.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene 235341..236771 + /locus_tag="Ccel_0209" + CDS 235341..236771 + /locus_tag="Ccel_0209" + /inference="protein motif:PFAM:PF00860" + /note="PFAM: Xanthine/uracil/vitamin C permease; sulphate + transporter; + KEGG: cth:Cthe_1251 xanthine/uracil/vitamin C permease" + /codon_start=1 + /transl_table=11 + /product="Xanthine/uracil/vitamin C permease" + /protein_id="ACL74596.1" + /db_xref="InterPro:IPR006043" + /db_xref="InterPro:IPR011547" + /translation="MSFFERQFKLKESGTNVATEAIAGFTTFFTMAYVIFVNPAILGQ + TGIPKGGVYVATILAAVVGTLIMGLFANVPYAQAPGMGLNAFFTFTVVFGLGYTWQQA + LAMVFICGVINIIITVTKIRKMIIKAIPESLQLAIGGGIGLFIAYIGFKSAGFLKFTS + EGKAYAPLKILGDDPTSATVVAEGANVVPAFVNFTSPVAQVALIGLVITAVLMILKVK + GAILVGILASTVIGIPLNVTDISMSSSYKIADVAQTAFKMDFVGLFSDPGKLALVLVT + ILAFSLSDTFDTIGTFIGTGRKSGIFDDKDEAELFAGKGFKSKMDKALFADATATSIG + ALFGTSNTTTYVESAAGIGAGGRTGLTSVFTALLFALCLLFAPIAGVIPAAATAPALI + IVGVLMMGSFAKIKWDDFEEALPAFFTAALMPFAYSITSGIASGFIMYIIVKVFRGKA + KAVHPVMYIVTGLFLLNFLLSALLKL" + gene 236949..237908 + /locus_tag="Ccel_0210" + CDS 236949..237908 + /locus_tag="Ccel_0210" + /inference="protein motif:PFAM:PF05448" + /note="PFAM: Acetyl xylan esterase; + KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C + deacetylase)" + /codon_start=1 + /transl_table=11 + /product="Acetyl xylan esterase" + /protein_id="ACL74597.1" + /db_xref="InterPro:IPR008391" + /translation="MPLIDMPLAELKKYNGINPCPADFNEYWDKSKEEMESTESNVEL + IPSDFQVPFAECFDLYFTGVRGARIHAKYLRPKGMNEPHPAVLQFHGYTSNSGDWNDK + LNFVAMGYSVAALDARGQGGYSQDLGSVKGDTVHGHIMRGLDDKPENMLFRHIFLDTA + QLAKIVMAMPEIDESRVGAMGFSQGGALTLACAALEPRIKKLAPVYPFLCDYKRVWEM + DLAKDAYNDIRDYFRLFDPLHEREDEVFEKLGYIDLQYLVKHIKGEVLMGVGLMDNIC + PPSTQFSAYNKIASKKQMLIYPDYGHENIPTIMDKIYQFMMGL" + gene complement(237978..239078) + /locus_tag="Ccel_0211" + CDS complement(237978..239078) + /locus_tag="Ccel_0211" + /inference="similar to AA sequence:KEGG:CLH_3263" + /note="KEGG: cbt:CLH_3263 ATPase" + /codon_start=1 + /transl_table=11 + /product="ATPase" + /protein_id="ACL74598.1" + /translation="MCAKIINYYACANSAKGFVNYLDDNINFLDRLFILKGGPATGKS + TLMKRLGKEWYNRGFDVEYIHSPCDNSSVDGIIFPSLGIGVVDGTFPHVVEPRAPGAI + EEYINLGTAWNSKKLIPQKDEILAISKQISSCYKNTYNLFSQALKIHDEWEKIYISNI + NFSKINELTQETINTIIGNNVKNNQANVKNRFFGGATPKGSVDFVMDLTSDMSNRYFI + KGRPGSGKSTMLKKIAQSAQDKGFDVEIYHCGFDPDSLDMVIIRELSVAVFDSTAPHE + YFPSKDTDRIIDVYSYAIKPGTDEEFKTQLEDIISRYKGIIREGIQYLSKAKDFNDDL + ENIYIDAIDYDIVDKIHQDIRLKIDDYFFSMV" + gene 239553..241346 + /locus_tag="Ccel_0212" + CDS 239553..241346 + /locus_tag="Ccel_0212" + /inference="protein motif:PFAM:PF00821" + /note="PFAM: phosphoenolpyruvate carboxykinase (GTP); + KEGG: cth:Cthe_2874 phosphoenolpyruvate carboxykinase" + /codon_start=1 + /transl_table=11 + /product="phosphoenolpyruvate carboxykinase (GTP)" + /protein_id="ACL74599.1" + /db_xref="InterPro:IPR008209" + /translation="MTTNKKLEAWVKEIADMCQPDQIYWCDGSQEENDRLLKEMVDSG + MAKPLNPEKRPGCYSFNSDPSDVARVENRTYIASKTKEEAGPTNNWVDPNELKDTMKN + LYKGCMKGRTMYVIPFSMGPIGSPISKIGVELTDSAYVVVNMRIMTRIGKKVLETLGD + GEFVPCLHSVGAPLAEGEKDAKWPCAPIEKKYISHFPEEKTIWSYGSGYGGNALLGKK + CFALRIASVIAREEGWLAEHMLILKLTDPKGNVKYICGAFPSACGKTNLAMLVPTIPG + WKVETIGDDIAWMKFGKDGRLYAINPEAGFFGVAPGTSLDSNPNAMHSIEKNTIFTNV + GVTDDGDVWWEGMGVDAPAHLIDWHGKDWTPGSESPAAHPNARFTAPASQCPVIAPEW + EDPAGVPISAILIGGRRPSTIPLVHQSFDWNHGVFLGSIMGSEITAAAISDKIGQVRR + DPFAMLPFIGYNVNDYLQHWLDVGAASTEDKLPKIFYVNWFRKDENGKWLWPGYGENS + RVLKWICERVSGEGKAVKTEIGYMPTEDAIDVEGLNISAEDMEELLKVKKDEWLKEVE + SIKAHYETYDINKVPAELKKQLADLEARLKA" + gene 241577..242248 + /locus_tag="Ccel_0213" + CDS 241577..242248 + /locus_tag="Ccel_0213" + /inference="similar to AA sequence:KEGG:Csac_0293" + /note="KEGG: csc:Csac_0293 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74600.1" + /translation="MITLNKKILGILGDYYHDHDMALGALKKAVDILNRSGSDTFELI + DSNFEGLDSALSQKVDLVILGSENRINPTDEVVNNWMTYDIEKKIVDYVNNGGSWMAW + HAGLASYDETGEYTQMIGGYFLNHPSEHNIVRYIPRKNSSGISLKETFEVIDEHYFVK + YNLDSSLIFLQSESPYGKSKAGWAREWGNGRVCCLTPTHREEGLTNKVMLEVLADCIA + WCCKI" + gene 242291..243682 + /locus_tag="Ccel_0214" + CDS 242291..243682 + /locus_tag="Ccel_0214" + /inference="protein motif:PFAM:PF02614" + /note="PFAM: Glucuronate isomerase; + KEGG: bsu:BSU12300 glucuronate isomerase" + /codon_start=1 + /transl_table=11 + /product="Glucuronate isomerase" + /protein_id="ACL74601.1" + /db_xref="InterPro:IPR003766" + /translation="MLSNNFILSGKTAVSLYERYAKDAPVYDYHCHLCAKEIYEDEAF + NDISSIWLGYDHYKWRTMRFAGVPEEYITGNGDGRTKFRVWAKTCERLIGSPLYHWAN + MELKTYFGVDEILKESNADRIYDHCNAKIKEEKLSPVKMIKASNVRLVCTTDDPVDSL + EYHLLLGKNSEKGFDVFPTFRPDNVLKILNDNFIEYIRKLEATTKLKIITYQDMLNVL + KNRIEFFRQAGCLLSDHSLESLVYLPTDIVEAGSIFLKRLNGEVITTHEAEKYKLYTL + SFLARAYKEAGWAMQLHIGAIRSTNDNMLKKAGVDSGFDIMNDFQIAEPLAKLLNDMD + KMNCLPKTILYTLNSKDNLVLSSLPHCFTEDGVPGKVQFGAAWWFNDHKEGITAHLKA + IADQGMLAYFVGMLTDSRSFLSYVRHDYFRRILCSFVGDLVEKGEFADDDAILGEIVE + GICFKNIVRYLGL" + gene complement(243756..245777) + /locus_tag="Ccel_0215" + CDS complement(243756..245777) + /locus_tag="Ccel_0215" + /inference="protein motif:PFAM:PF03190" + /note="PFAM: protein of unknown function DUF255; + KEGG: cth:Cthe_0291 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF255" + /protein_id="ACL74602.1" + /db_xref="InterPro:IPR004879" + /translation="MTTNNRMPNKLINEKSPYLLQHAHNPVDWYPWGPEAFSRAVSED + KPIFLSIGYSTCHWCHVMERESFEDEEVAHILNRDFICIKVDREERPDIDSIYMSVCQ + ALTGHGGWPLTVFLTPDKQPFYAGTYFPKEDSKGLMGLISLLGSVKEAWDNKREHLLV + SAENIINHVSKESISKDSKISSDIIQEAFAHFKYNFDSKYGGFGTSPKFPSPHTLLFL + LRYWYTKKEPYALEMVEKTLESMKNGGIFDHIGFGFSRYSTDKKWLVPHFEKMLYDNA + LLAIAYGEAYSATGNKNYEETARQILDYVQRDMSSQLGAFYSAEDADSEGVEGKFYIW + SKEEVINVLGSKDGEEYCRIFDISPSGNFEGLNIPNLIETGTLPEQQKSFAEDCRKKL + FTHREKRIHPYKDDKILTAWNGLMTAAMAYCGRVLGEDKYIESAKRCIDFISKKLVRT + DGRLLARYREGEAVFPAYLEDYAFLVWGLLELYEATFTTLYLKRALKLTDAMLNLFGE + NNSTGLFLYGHDSEQLIARPRESYDGAIPSGNSVAAMNLLRLARITGRHEYENRAKAI + MDFFGTQINAAPTGHSYMLCSYMYSVSDISSEVVIAGVDGKGLIDTFNNKYLPFAVAI + SNISPELTEIAPFIGDYKAQNGKTMAYVCRNFSCMEPITEPKKLGEVLS" + gene 246091..246420 + /locus_tag="Ccel_0216" + CDS 246091..246420 + /locus_tag="Ccel_0216" + /inference="protein motif:PFAM:PF03551" + /note="PFAM: transcriptional regulator PadR family + protein; + KEGG: cbf:CLI_0152 PadR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, PadR-like family" + /protein_id="ACL74603.1" + /db_xref="InterPro:IPR005149" + /translation="MADRSQFLRGTLEGCILKIIEHNETYGYEIAEKLQKYGFSEISE + GTIYPLLLRLEKNGMINSVKKVSAYGPKRKYYSLTETGKKEILEFYTIWCEIQNAINQ + IFKEGVE" + gene 246423..247100 + /locus_tag="Ccel_0217" + CDS 246423..247100 + /locus_tag="Ccel_0217" + /inference="similar to AA sequence:KEGG:CA_P0154" + /note="KEGG: cac:CA_P0154 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74604.1" + /translation="MLSLESLRNENNRFSEKLNKENRDIYTDIVCYLRVSYLTDVQQE + EIISDILSMFFDWEKQGKKVKDMIGEDYKKFADDIINAVNPHKSILEKSKEYLFIILE + AFCYMFTIDFLFLLPKIIKGNLHLMYDYSLDMALRSLLILIVAVSVINYIGRNSFSLR + KKAISKPTRFLIGCCVGGFFIISAFLPKALSHIIFLSINIRYVIAITVVFWIYKAIRR + ILLNYCT" + gene 247219..247857 + /locus_tag="Ccel_0218" + CDS 247219..247857 + /locus_tag="Ccel_0218" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: mba:Mbar_A2392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL74605.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MNIHEHIEKWQVEDGVHLFDKIKLPDNSVLIDFGCGYGEYTISL + ALSKKHSTVFSVDKDERMLKIVQDKIESHSITNVRLIKADGTLSIAFPDCYSDMILMY + DFIHGNTQEKLPIRFKFFEEARRVLKPNGILSIAPFECEYLRDSSGKRRRYSLGMLIS + EIESYGFRYSESIDGAVHFDYYHSPYHWKKLNGEMSFDYLEIGPVMNFYKQK" + gene 248175..249629 + /locus_tag="Ccel_0219" + CDS 248175..249629 + /locus_tag="Ccel_0219" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74606.1" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MQQNLLLIHVKKVNKILNWVFFALGFVMLIAGIATRTIASSSIP + LAITIASAFLALFLRYKKKDMAASYVLVVSALAQVLPLLPMMGGNAFILAMLPITVTA + LYLNKWIFIFVGSIINAVVIILQIVMPGSNIEAHIFSDVFQLLITLVLFLLVKDGGKL + IQGSSENAEQANKLLDELQNTMNVVKTSTSGLNVDISKATENLEVVHEISSSITTSTQ + EITTGIVGQSSSVTEISQMIKEADNKISELTEFSNQLENVSANASNVVTEGSEKINTM + DKQMEIINQAVAKSFETVQELNENMDEINNFLSGITHIAEQTNLLALNAAIEAARAGE + SGKGFAVVAEEVRNLAEQSANTVGHIYQIINKIKEKTKNVIDEVSIGQTATQDGEKAV + KIVNKNFEMIQVSFKDIDRYISDEISRIENIADLFSRINTEVESIASISKEQAASTEE + LLSTLEEQNLNIENMYGLIQGIKTSSDNLQGLIK" + gene complement(249891..250937) + /locus_tag="Ccel_0220" + CDS complement(249891..250937) + /locus_tag="Ccel_0220" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74607.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(251067..252752) + /locus_tag="Ccel_0221" + CDS complement(251067..252752) + /locus_tag="Ccel_0221" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; CHASE3 domain protein; + KEGG: lsp:Bsph_4425 methyl-accepting chemotaxis protein + McpA (H1)" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74608.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR007891" + /translation="MSVAKKLITGYLLVLVIMAGIVGISIYATQSLKTQAENLITDAI + PIGYAADGLLTALVNEETGVRGYLVSGDETFLEPYNSGKSDVRTRLKEIESRLDKHPI + MAQLITEAKPKIDAIENYFDSQISLVKQGDLEEARSKAGDGKQLFDDFRKSHDKIKDD + VYKLTNDAWNEVLDVHNRSNILIIVISIIAVLITIILSFILTRIISTPVKKVTDTLHK + ISGGDLTVDSLNIKSKDEIGVLVTSLNKMVSSMKEILSKVSDVSAQVAASSEELTASA + EQCTKANEQIAEATLKSASGAEEQLGSVEHSTDTIKEMSSNIYQIAINSKEMYTLSDK + AFSASEDGIITVNDVVEQMNDITTTISDSENVIRKLGEHSKEIGNMVAIITSITEQTN + LLALNAAIEAARAGEQGNGFAVVADEIRKLAEQSKASASQIDEFVKEIQSETENAVTS + INKGNEKVKDGFAKTQQVAETFKAIKDDVTNVNRKVKDVMASIEIVSSQSQAIVSTSE + TIKKAAEEGAILSQENSAANEEQVATMEEITSSAQALAELANELQSSVSIFKI" + gene 253238..253621 + /locus_tag="Ccel_0222" + CDS 253238..253621 + /locus_tag="Ccel_0222" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; + KEGG: cbe:Cbei_4343 regulatory protein GntR, HTH" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL74609.1" + /db_xref="InterPro:IPR000524" + /translation="MKIIISNTSGVPIYEQIKEQIKSAILSGEVEENQLLPSLRQLAR + ELKISVLTTTRAYTELEQEGYVTNVQGKGCYVLGRGSELIREQLLRDIEENLSAAIKS + ARRADVSKDDLVKMLRILMEDEGYE" + gene 253614..254474 + /locus_tag="Ccel_0223" + CDS 253614..254474 + /locus_tag="Ccel_0223" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: blj:BLD_0790 ABC-type multidrug transport system + ATPase component" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74610.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MNNDIEIRNLCKNFDSFKLNDISFSLPQGYIMGLVGPNGAGKTT + TIKLMLNMIQKTSGDIKILGLDSVTDQNRIKESIGAVFDTNYFVQDWTVNEVERYIGM + FYDTWDSAKYKSLTNKFGLNSDKKVKDLSRGMQMKLMVSCALSHDARLLILDEPTSGL + DPVAREELLDIMTEFIGDGKSSVLFSTHITSDLDKIADYITFINQGSLFYTGTKDDFI + DGFRIVKGGKNDITREQEGKMIGIRKYSTGFEGLIKTEDLRYFVTLACEPVSIDDIIV + FTNRGGKCND" + gene 254467..255120 + /locus_tag="Ccel_0224" + CDS 254467..255120 + /locus_tag="Ccel_0224" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: pth:PTH_0277 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74611.1" + /translation="MTNILKLVKLDFALIKPYIKIIFIALLSPLIVMYTMRDIISGTI + FCMCIMAITSGYTFSVVEKNDLNRLYGLLPVGRKDIVSARYLFIALEGLILNFIGVSA + NAIILTILKVNFTFSDILIGFSVGHVVYYFFTAIQLPLFFKFGGIKGRFFSFLPFLGI + FSISEVAKRMSTDKLAELSSIAIINNPYGILILSILFGILSYSISVGISQKIFSRLE" + gene 255425..255513 + /locus_tag="Ccel_R0005" + /note="tRNA-Ser3" + tRNA 255425..255513 + /locus_tag="Ccel_R0005" + /product="tRNA-Ser" + gene complement(255709..256338) + /locus_tag="Ccel_0225" + CDS complement(255709..256338) + /locus_tag="Ccel_0225" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:CTC01036 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74612.1" + /translation="MKIRFCVISLLVICIFLLTSCSSNETVDASNITSPVTHSNNSSS + ENISDTNKQTEMESTITKNEKPSTKDVKCRLYFLATTELKYYYIDKMIPVEDNALITA + LTKELQSTSYNKDFLSLTDKIKIKSAKLDETTGVLKVVFSDSYVDHMNLGTNTEAGLL + TCLLATYGYNLGVDKVAIYFNDELYTSLKGDLPEGYFDVNYPSAQVYNP" + gene complement(257112..257546) + /locus_tag="Ccel_0226" + CDS complement(257112..257546) + /locus_tag="Ccel_0226" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_0732 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74613.1" + /translation="MKSVFHKYIIVLFCAFCLVIPWSSYPVDAADNQKIGVQPFNLYI + SSTSESVSISNGIATCSSSIRSTTNVTEVIIVAKLQKYQNGSWITQETFTETSYTYYG + ALSKTCAVEHGYSYRLVTTYQAVVNGLSVETITKTYNYGLYL" + gene complement(257627..258307) + /locus_tag="Ccel_0227" + CDS complement(257627..258307) + /locus_tag="Ccel_0227" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_0468 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74614.1" + /translation="MISTKTLQDVLISVAKDTQINLSAELERYMSPSHKFSRSYTKRK + KLILRSQDEFLTISCFRKRILIPLVIIITIITCAMSVPAIREPVITFIVNVYNDMTDY + IIRSDNEESVVIINDFTLEYIPENFTRQNTQVTSNLKTEVYKDNAGNGFSFTLEYYKE + GINFSMDTENADITKTKIRGLSTIISEKNTGINIAVFDNKRHQIWNLTGNIDCDIALK + IVENVKIK" + gene complement(258304..258846) + /locus_tag="Ccel_0228" + CDS complement(258304..258846) + /locus_tag="Ccel_0228" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 + type 2; + KEGG: csc:Csac_0467 ECF subfamily RNA polymerase sigma-24 + factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL74615.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MEFFLSVLETEEDRGKFTNLYTYYESAMYNVAFSILRDRYLAED + AVHEALLKIINYIPDISDIQCHKTRALIVIIIKSAAIDIYRKRDKQYTNEKPELPVEA + DTGKLPLDHIIDDESFNELKMKLCKLNKEYMEIIMLKHLYDLSNNEIADVLCISCDAV + RQRLSRAKKAIKKVIEEENK" + gene 259038..259604 + /locus_tag="Ccel_0229" + CDS 259038..259604 + /locus_tag="Ccel_0229" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: nth:Nther_0814 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74616.1" + /translation="MKRGLLLFFAATIISTLCACQSLSNSKENSLVSSSVTTTHDSSV + TNEKITSEEREDWIIVDKSVTVKELEYTINAYKRSAKSELFEADKGKTFLLIDITVKN + KSNIAATVNSNLMFDLTDRFGTSYNDTSLGALSCLDDENLEQLDGHIAAASEFRGGIA + FEIPKVTKGLRLIIQGPAGDGRSPVVLY" + gene 259824..260300 + /locus_tag="Ccel_0230" + CDS 259824..260300 + /locus_tag="Ccel_0230" + /inference="protein motif:PFAM:PF00293" + /note="PFAM: NUDIX hydrolase; + KEGG: tte:TTE1781 ADP-ribose pyrophosphatase" + /codon_start=1 + /transl_table=11 + /product="NUDIX hydrolase" + /protein_id="ACL74617.1" + /db_xref="InterPro:IPR000086" + /translation="MDKIKDENTNWCQSVGGIVLKGNEVLLVRHTYGAGKGKLIIPGG + YVRVNETPQDALSREVFEETTVVAKPTGLVGVRFNLKDWYAVFMMDYVEGTPNSDNKE + NSEALFMDINEAVKSPDVPDLTKVILKGVIENKDNAFENKPFVSREKHGEYSFYGI" + gene 260554..262701 + /locus_tag="Ccel_0231" + CDS 260554..262701 + /locus_tag="Ccel_0231" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; type 3a + cellulose-binding domain protein; cellulosome protein + dockerin type I; + KEGG: cth:Cthe_0043 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL74618.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MRKKFLKTTSFMLIMSLLVSLFVYAPTTVRAETSPRVGGSFYNY + GEAMQKSILFYKANRLGDLPDNYVLPYRGDAAMTDGKDVGLDLTGGWADAGDGIKFTH + PMSYAAGQLGWAVYEYRDAFEKSGQLDDILDEIKWATDFFIKAHPSPDVLYYMCGYEE + SDHSVWIPHELLDYKTDRKSFKVDSTTPGSDVAGQTAAALAIASIIFEPTDPEYAETC + LTHAKQLFKFGDTYRGKNPLKTLYPSGGYLDDLAWGAIWLYIKTQDATYLEKAKSILP + VTVLGGQHTHCWDDVSYGAALKIAQAGRDESYAAMVEKNLDYWMPGTGIKYTPGGLAW + LSQWGSLRYATTAAFLAFVWSDDKTIGTASKKQTYHDFAERQINYALGDNPRGGSYEV + GFGVDAPEHPHHRTAHGSWTSMLNVPTFHRHILYGALVGGPSSDDSWKDDIKDYTLNE + VATDYNAGFVGCLAKMYSMYGGNPLENWPKAEDFRSPQDNLTEYFTRGWIIYEGYGKL + KVMFQINNRSAWPATMKDKMSTRYYMDLSEIFEAGGTVDDVQLTLEDSQGAKLIGLKQ + YKDNIYYFTVDFTGTQIMPAEWEMCEKDATVQIEYKNGVGSNENDWSYQNISGPPDFD + AVSFAGMSKYIPVYDNGKLLWGEEPAGKEPEVMYGDINNDGNIDAIDFALLKKILMGD + TSGNVNLTAADFNKDGDINAIDYAALKSYLQRG" + gene complement(263027..263401) + /locus_tag="Ccel_0232" + CDS complement(263027..263401) + /locus_tag="Ccel_0232" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bat:BAS1604 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74619.1" + /translation="MLSIYNNSEDLIILIHEIYGINPFILDTANRFALYGVIFCYGSR + IRDYTDISPSCPALLLFPSHEKSFNVRGFVSSFKKPGVEVHTLEGNHGFADSYSSEYN + KSSAQKTFALIDDFLKENSSGS" + gene 263516..263986 + /locus_tag="Ccel_0233" + CDS 263516..263986 + /locus_tag="Ccel_0233" + /inference="protein motif:TFAM:TIGR01909" + /note="TIGRFAM: C_GCAxxG_C_C family protein; + KEGG: cth:Cthe_1399 C_GCAxxG_C_C family protein" + /codon_start=1 + /transl_table=11 + /product="C_GCAxxG_C_C family protein" + /protein_id="ACL74620.1" + /db_xref="InterPro:IPR010181" + /translation="MGASSEKALELFKEGYNCSQAVFGAFSNDIGMELKSALRIASSF + GGGMGRLREVCGAVSGMFMVAGILYGYDNPEEMEAKKEHYKLIQELAQRFKDINGTIV + CRELLGLGKGPDNPTPESRTESYYTRRPCAEYVKCAADIMEQYICQKKAEAVSD" + gene complement(264063..265919) + /locus_tag="Ccel_0234" + CDS complement(264063..265919) + /locus_tag="Ccel_0234" + /inference="protein motif:TFAM:TIGR01512" + /note="TIGRFAM: ATPase, P-type (transporting), HAD + superfamily, subfamily IC; cadmium-translocating P-type + ATPase; heavy metal translocating P-type ATPase; + PFAM: Haloacid dehalogenase domain protein hydrolase; + E1-E2 ATPase-associated domain protein; + KEGG: aoe:Clos_1087 heavy metal translocating P-type + ATPase" + /codon_start=1 + /transl_table=11 + /product="cadmium-translocating P-type ATPase" + /protein_id="ACL74621.1" + /db_xref="InterPro:IPR000695" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006404" + /db_xref="InterPro:IPR006416" + /db_xref="InterPro:IPR008250" + /translation="MNKAKKVIIRIGAGTLLLIIAVVASFPSYLNLAFFVSAYLIIGG + DVLWRALRNISHGQVFDENFLMSIATVGAFFVGEYPEAVSVMLFYQVGEMFQDFAVNR + SRKSISALMDIRPDYANVKRNGELVTVDPEEVVINEVIVVKAGEKIPLDGKVLEGYSL + VDTSALTGESVPREINTGSEVLSGCINLIGLLTIQVTKEFGESTVSKILDLVENASSK + KAKRENFITRFARYYTPIVVIVAVTLAVVPPLLVPGATFSDWIYRALIFLVVSCPCAL + VISIPLGFFGGIGGASRLGILIKGGNYLEALAAAEVVVFDKTGTLTKGTFKVTEIHPV + GISDSDLFELTAHAESYSNHPISQSLKNAFKSEIDNSRIKGVEEIPGYGVKAVVDEKT + IYAGNSKLMDKIGAVYSQNKTVGTVVHVTISGIYSGYIVISDEIKEDSASAITRLKAF + GINKTVLLTGDAKDVGESVGETLGLDEVYTELLPADKVNKVEKLIAEKSPKGNLIFAG + DGINDAPVLSRADVGIAMGGLGSDAAIEAADVVIMNDEPSKIATAIAISKKTLRIVNQ + NIVLALGVKAIVLAMGAFGLSNLWEAVFADVGVSVIAILNSARALRVDKAFK" + gene complement(265953..266171) + /locus_tag="Ccel_0235" + CDS complement(265953..266171) + /locus_tag="Ccel_0235" + /inference="protein motif:PFAM:PF00403" + /note="PFAM: Heavy metal transport/detoxification protein; + KEGG: fma:FMG_0054 putative cation-transporting P-type + ATPase" + /codon_start=1 + /transl_table=11 + /product="Heavy metal transport/detoxification protein" + /protein_id="ACL74622.1" + /db_xref="InterPro:IPR001366" + /db_xref="InterPro:IPR006121" + /translation="MKKIYRLNDLGCANCASKMEREINKLEGVNSATVNFISQKLIID + VVDESFEDIMTSVQKIIKKIEPDCTVKL" + gene complement(266193..266555) + /locus_tag="Ccel_0236" + CDS complement(266193..266555) + /locus_tag="Ccel_0236" + /inference="protein motif:PFAM:PF01022" + /note="PFAM: regulatory protein ArsR; + KEGG: tex:Teth514_1161 regulatory protein, ArsR" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, ArsR family" + /protein_id="ACL74623.1" + /db_xref="InterPro:IPR001845" + /translation="MAKEKELEKCDYICLHKDLIDQVLSHLPEETQLYDLAELFKVFG + DTTRIKILYVLFQAEMCVCDIAQLLNMSQSAISHQLRILKQAKLAKSRRDGKTIFYSL + SDSHVRSIIDQGFEHIVE" + gene 266778..267587 + /locus_tag="Ccel_0237" + CDS 266778..267587 + /locus_tag="Ccel_0237" + /inference="protein motif:PFAM:PF05582" + /note="PFAM: peptidase U57 YabG; + KEGG: cth:Cthe_2507 peptidase U57, YabG" + /codon_start=1 + /transl_table=11 + /product="peptidase U57 YabG" + /protein_id="ACL74624.1" + /db_xref="InterPro:IPR008764" + /translation="MTKFHIGDVVTRRSYGGDILFKVVNIKTNFNGSESYVLRGLSYR + IEADSQADDLVKQDARTAYTRAINELDRVKKSIDCSVPVFKTFLSRIKHKPGRILHID + SAEDFMNECLDFYKKSKINCYGKWVSENRQPSVVKQYLKSYRPDILVLTGHDGLKKGA + SNFQSLDSYANSAYFIEAVRIARSYESDPDKLCIFAGACQSYFEAIMQAGANFASSPR + RILINALDPAIVAQKVSVTDSSVILSPNSVIELTITGSAGIGGKDTRGQMR" + gene 267707..267862 + /locus_tag="Ccel_0238" + CDS 267707..267862 + /locus_tag="Ccel_0238" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74625.1" + /translation="MYFVGSVIVIAFFTFSYTFFFKIKKYIYSKKCSWYNTKNNTNFT + CKYILKM" + gene 267873..268883 + /locus_tag="Ccel_0239" + CDS 267873..268883 + /locus_tag="Ccel_0239" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: LOC100083241; similar to vitellogenin" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74626.1" + /translation="MKKRILAILLIFAFVSVSFIEADAKGLRSFSRSSKSFSKSYSGY + KSSSRNSSIFGSSRSKSSTSKSKSKSSGLFSSSKSKSSGSTKNSNSRSIPGSKSYTES + SSKKTNTSGFTAKASSKKKSYMQDTYKSQISNKNYKTYKQKLNNQQQKVYNDSMKRSY + GSNSRKMNFEDAMRTRTSRMNVFNNRPIFINVNRSIFGSPFSYGYAYVGPWDLWFLMR + ASDMFWYHHWNEISPYRNYFDQNQYRQLENRVEKLEKQGVQRDPNYMEEGVDPDLQLS + QQYQEQNPENVYYTDKYPTNSSRNTGAVVVVIIITSVGLIIVIRKLSKPKPKKPRHSR + VY" + gene 268920..269513 + /locus_tag="Ccel_0240" + CDS 268920..269513 + /locus_tag="Ccel_0240" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74627.1" + /translation="MFGFKKKGGQDILNPLNINSNSMVEFKLKELEEQGFFTFGKIIH + MGMGQRPFTRYLVYSRAEETEYIFEVYKGEEEGQLETYLYFLDDTVPFSEEFLEVVGQ + RCITTPDGTEYERCTMPQHDYRIDGVQGSIKVYDLNSEKVEYESEIEVWDYQRDAEGI + TEYLNIEMLKTNGMFRVFIGQRLEGSLYKVYQGLDEK" + gene 269533..270435 + /locus_tag="Ccel_0241" + CDS 269533..270435 + /locus_tag="Ccel_0241" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: shl:Shal_3574 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74628.1" + /translation="MLDYFIFFLKDLSFSFVILMVGFILGWVIYNNLVLRDVSLKDAL + FTKDNFATWIEFIGAFVFPVLYLSSHAIKGAASDNVFVDLAVCTGYTVFYVVILTVLR + LMSKTIVSLINAEDGHGKVCLNKEICEQKNIGAALFSVTLSVIFVSLIKYIDFIAIIV + DGVGAAILIKLLLFLVFVLIAIVCYSVVLRRKTTLFKELFIDNNAAAGIGLLGFVFAV + QTIITGIIDAYASDFNLITVALVIAVCLVIYGILSVLFKKIFTAIVKVDVWNEIYEQN + NVGAAVGQAALYVGIAMIIVNFIM" + gene 270950..271042 + /gene="ffs" + /locus_tag="Ccel_R0006" + ncRNA 270950..271042 + /ncRNA_class="SRP_RNA" + /gene="ffs" + /locus_tag="Ccel_R0006" + /product="SRP RNA; RNA component of signal + recognitionparti cle" + gene 271206..272894 + /locus_tag="Ccel_0242" + CDS 271206..272894 + /locus_tag="Ccel_0242" + /inference="protein motif:TFAM:TIGR02397" + /note="KEGG: cth:Cthe_2144 DNA polymerase III subunits + gamma and tau; + TIGRFAM: DNA polymerase III, subunits gamma and tau; + PFAM: AAA ATPase central domain protein; DNA polymerase + III delta; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, subunits gamma and tau" + /protein_id="ACL74629.1" + /db_xref="InterPro:IPR001270" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR010372" + /db_xref="InterPro:IPR012763" + /translation="MSYTALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFC + GTRGTGKTTMAKIFARAINCINPKDGNPCNECEVCRGILDESILDVVEIDAASNNSVD + NVREIRDEVVYAPSQARYKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPH + KLPATILSRCQRFDFKKITPAGIAERVKLIAQASGINIDDDGALLIARLADGALRDAL + SILDQCIAEGSTTITYQNVLDAIGIVSDDFISEIVDNIESKNVEGLVASVEMLSAEGR + DILRFASDLVLYFRNLLICKLSKNPENILDVGKQYLDKMIAQSEAFTKERLIGIIKEL + SSFETQLKYALNQRVFLEVMLISISVGSYGQSGSDNNLLDRITNLESAVRTGATALGP + SVKDRSSVSVQVNVANTSPVPSGKKLDNLPPIPGSSVPKSSAKGNSFNELEEWANILS + DLKANRRMMLLSYLTSTKAVAADESTVLVVFPPDVVSLKNIVSKAEHIDVLENALERR + LGRHVRVKVVDEESLESMVQKEPSPLKNSEESQLVKLTREISDRLNVPLDIIDE" + gene 272957..273304 + /locus_tag="Ccel_0243" + CDS 272957..273304 + /locus_tag="Ccel_0243" + /inference="protein motif:PFAM:PF02575" + /note="PFAM: conserved hypothetical protein; + KEGG: cth:Cthe_2143 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74630.1" + /db_xref="InterPro:IPR004401" + /translation="MARGGFPGGGFGGNMNNLMKQAQKMQKDMEKAQQDLENKTIEVS + VGGGAINIVATGKKEIKEITIKPEVVDPDDVEMLQDLILSAVNEALRKADELANSEMS + KITGGLGGLPGMF" + gene 273343..273942 + /locus_tag="Ccel_0244" + CDS 273343..273942 + /locus_tag="Ccel_0244" + /inference="protein motif:TFAM:TIGR00615" + /note="KEGG: cth:Cthe_2142 recombination protein RecR; + TIGRFAM: recombination protein RecR; + PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; + SMART: Toprim sub domain protein" + /codon_start=1 + /transl_table=11 + /product="recombination protein RecR" + /protein_id="ACL74631.1" + /db_xref="InterPro:IPR000093" + /db_xref="InterPro:IPR006154" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR015967" + /translation="MEYYAVPIAKLVEEFQKLPGIGHKSAQRLAFHVINLPMEKVQKL + SESILEAKQKTRYCSVCSNLTDIDPCPLCSGTSRDKTVICVVQDPRDVVAMERTREFK + GLYHVLHGAISPMQGIGPEEIRIKELITRLGSGDVKEVILATNPNVEGEATAMYISKL + IKPLGVKATRIAHGIPVGGDLEYADEVTLAKALEGRREI" + gene 273951..274076 + /locus_tag="Ccel_0245" + CDS 273951..274076 + /locus_tag="Ccel_0245" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74632.1" + /translation="MEVCIIKHGQRDKKFLLAIIFLENKNIRYHSKPLDIISLIE" + gene 274123..274800 + /locus_tag="Ccel_0246" + CDS 274123..274800 + /locus_tag="Ccel_0246" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cpy:Cphy_0704 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL74633.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MYKILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREK + EFDIIVMDVMMPELDGFSACKEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKP + FSPKELMMRINVIVKRSRGTSDTENKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEY + DLFFYLVKNRGIALTRERLITDVWGYDFFGDDRTLDTHIKLLRKSLGDYSKNIVTLRG + VGYRFET" + gene 274790..276256 + /locus_tag="Ccel_0247" + CDS 274790..276256 + /locus_tag="Ccel_0247" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cpy:Cphy_0705 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL74634.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MKHDKISIRYNMFFYLTAFVAVLLILLWLFQIVFLDDFYKQIKI + HSIKSMAETIENNVDAENFQEFLTSLSQEEDACIKILDDSGKTKYSVESRPDCIIHKV + PPSELFRLYNRAEQNGGTYLEMFPMDKGKERRDPAAYPFANNFAPPGNIPGNIIFVKI + VDIGDGSHAIVMLNSTITPVNATVNTLRIQLIWVTGITLLMALLMGLFISRKVSDPII + KINSSAKELAKGNYDTIFHGRGYLEIAELNSTLNYAAKELSKVEGLRKELIANISHDL + RTPLTMITGYGEVMRDLPGENTPENVQIIIDEAKRLTTLVNDILDISQLESGTLKLNL + DTFNITESIRNILQRYNKLTEQDGYRLEFKSDKDIWVNADTVKMSQVIYNLINNAITY + TGPDRTVTIIQSSSSDSVKVEITDTGEGISEEMLPLIWDRYYKIDKAHKRAAIGTGLG + LSIVKTILDMHGARYGVGSKPGKGSTFWFELNFEQKLN" + gene 276341..277987 + /locus_tag="Ccel_0248" + CDS 276341..277987 + /locus_tag="Ccel_0248" + /inference="protein motif:PFAM:PF02833" + /note="PFAM: CBS domain containing protein; DHHA2 domain + protein; DRTGG domain protein; + KEGG: ctc:CTC01649 putative manganese-dependent inorganic + pyrophosphatase" + /codon_start=1 + /transl_table=11 + /product="DHHA2 domain protein" + /protein_id="ACL74635.1" + /db_xref="InterPro:IPR000644" + /db_xref="InterPro:IPR004097" + /db_xref="InterPro:IPR010766" + /translation="MKDIIYITGHKNPDTDSICSAIAYAELKKRHAALAVPIRIGDIN + KETEFVLKYFGVEVPEYRETVRTQISDLDIDIISPVSEDISIKAAWSIMLKNNVKVLP + VADVKGKLIGIITLSDITGSYLDALENNIICASGTPCRNIMDTLAAKLVCGDEENFKS + AGKVVIAAMAPEDMEPFIDRGDIVLVGSRKDSQLKAIEIGASSMIITCGAKADEEVIK + FAEEKGCIVMDTYYDTFTTARLINQSIPVSHIMTKEQLISFNINDYIDNIKDKMLKTR + YRSYPVVDDEGIIKGFISRYHLITQRRKKVILLDHNERAQTIDGIDQADILEIIDHHR + IGDIQTGYPIFFKNDAVGSTSTLIANMYFENGMNPSKSVAGLLCAAIISDTMKFKSPT + STYADELAASRLAKIADINIDEFATSLFKANASLQGMTPQTILDYDFKDFVFNKYKIG + IGQINSSDTEGLNKIKDNLLKHMRTVLENREYSLILLLVTDIIKEGSELLFVGDDHAA + LMEKAFNIKTGENGAFLKGLVSRKKQVVPQLSSTIQRESI" + gene 278212..278898 + /locus_tag="Ccel_0249" + CDS 278212..278898 + /locus_tag="Ccel_0249" + /inference="similar to AA sequence:KEGG:Mlab_1595" + /note="KEGG: mla:Mlab_1595 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74636.1" + /translation="MERLKLRHEIKHEISTSDYIAVQHRLKYIAGKDPNADQSGRYKI + RSLYFDNVDNKALKEKIIGLNNREKFRIRYYNGDTRHIKLEKKGKINGLCYKKSTRLT + VEQCEQIISGDIKWMRFSDDLLLLELYTKMNFQQLRPRILVDYVREPYIYKPGNVRIT + FDSGIKTGLNSKELFNQQTVSMNTHAVNKIIMEVKFDEFLPEIISDIIQLGQRQSSAF + SKYAASRIFG" + gene 278924..279595 + /locus_tag="Ccel_0250" + CDS 278924..279595 + /locus_tag="Ccel_0250" + /inference="similar to AA sequence:KEGG:Swol_2179" + /note="KEGG: swo:Swol_2179 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74637.1" + /translation="MNFNDIFKSNFVEKVSSFSPLDMVIALAVSFALGLFIFYVYKKT + FNGVMYSASFGVSLLAMTLITTLIILAVTSNVILSLGMVGALSIVRFRSAIKEPMDIA + FLFWSISAGIVTGAGLIPLGVFGSLFIGVVMVIFVNKKTNDNPYILVVNCMDDKAEKL + VNSAIIDNVKKHVVKSKAVTTSGVELTVEVRLKGSSTEFVNQISEIRGVTNTVLVSYN + GEYMS" + gene 279611..281650 + /locus_tag="Ccel_0251" + CDS 279611..281650 + /locus_tag="Ccel_0251" + /inference="protein motif:PFAM:PF08757" + /note="PFAM: Spore coat protein CotH; + KEGG: cpy:Cphy_0703 spore coat protein CotH" + /codon_start=1 + /transl_table=11 + /product="Spore coat protein CotH" + /protein_id="ACL74638.1" + /db_xref="InterPro:IPR014867" + /translation="MITSKYINIIIAVVLIVVVVFTGIFMTVPGSIGIATENSQPEYV + TKLFDKNKIISIDIKADKKEWEEMLKNATSEEYIQCDATINGTTYKSVGIRPKGNSSL + SMVANSDSDRYSFKLEFDHYIKGQTCMGVDKMVINNIQADSTYMKEYLSFDMMSYMGV + TTPLYAYTDVTVNGEKWGFYLAVEAMEESFAKRNYGVDFGKLYKPETMGGQRDENMKD + IPRNQEDEQKKNRVQQQQPGIVSGTTAEANGINGNSKTTDAQNTNQAGPGGFPGGPGF + GGFGNNQGGGADLKYIDDKISSYSNIFEGEIFKGTDADYKRVIKAIKNLNNGTELEKY + ISVDECLRYFAVNTVVVNLDSYFSNMKHNYYLYEENGKLSMLPWDYNLAFAGFQSGTA + SSAVNFPIDTPVSGIEMSERPILNKLLEVDEYKEKYHKYLKDILNGYIDNEKFGSTVD + KLNSLIAGYVKNDATAFFTYDKYTAGVAMLKEFGKLRAKSIEGQLNGSIPSTKEGQSK + ASDKLIDASAINLSVMGTQGGGGGGGRVGGDRASQLEKSQQQGDDQKPQENQQGNSRM + LPGDMPDRDIMMQAMRIVQSADEEDLTEEQLKQLKELGMTEEQIAFVKNMPFGKGGMG + GDGISSQKGDNSIKSNNRQETTRMSDQDILVTGIYLVFMAAGLLFVIKFKRRKSS" + gene 281804..283108 + /locus_tag="Ccel_0252" + CDS 281804..283108 + /locus_tag="Ccel_0252" + /inference="protein motif:PFAM:PF01595" + /note="PFAM: CBS domain containing protein; protein of + unknown function DUF21; transporter-associated region; + KEGG: cth:Cthe_2870 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF21" + /protein_id="ACL74639.1" + /db_xref="InterPro:IPR000644" + /db_xref="InterPro:IPR002550" + /db_xref="InterPro:IPR005170" + /translation="MLTKVLLLVVLVLLNAFFSGSEIALISLNDKLIKKQAEEGDKKA + KQLYSFLSEPSRFLATIQIGITLAGFLASAFATESFVDDLTGLLVKTGFPVAESVIRS + VSLVVITIILSYFTLVFGELIPKRLAMQKSEFLANIAVGPLMFLSRITNPFVRFLTFS + TNFFIKVFGGNPAGGDDEKVTEEEIRMMMEVGEERGVIQDTEKEMIDNIFEFDNKSVS + EIMTHRTNIVGIPVDSDINYVLYIMNRDKYTRVPIYNDNIDNIVGILHVKDLLEYTQS + HNKDFSLKKIIRSAYFVPESKRTDELFKEMQKNKVHLAVVIDEYGGTAGIVTIEDLLE + EIVGNIFDEYDIEQKDIEYLENNTYIFDGAIDLDKVEEVLDEDLPVDDFDTLGGFILK + LLGRIPKVDEKPTVPYENIVFKVVKMEGKRIVKVQASKQENN" + gene 283389..283757 + /locus_tag="Ccel_0253" + CDS 283389..283757 + /locus_tag="Ccel_0253" + /inference="similar to AA sequence:KEGG:Cthe_2131" + /note="KEGG: cth:Cthe_2131 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74640.1" + /translation="MAREAIGKCPVCGNETEVTRITCNSCDTVIEGHFKLCKFCKLTN + DQRAFLDVFIKCRGNIKEVEKELGVSYPTVKNKLEDVAAALGHKGEPQPEVPGRKKEI + LDKLNSGEISVEEAVELMKE" + gene 283793..284995 + /locus_tag="Ccel_0254" + CDS 283793..284995 + /locus_tag="Ccel_0254" + /inference="similar to AA sequence:KEGG:Cthe_2130" + /note="KEGG: cth:Cthe_2130 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74641.1" + /translation="MSISEEKLLILKMLEEKKISSEEAAKLLAALDEKKEEEPADRYK + TNQKTNGFTEEAAKVREKVNEWRKGFKNNYNQADFDNMIDDFANKAEKIGKNVATTTF + GIVDKVIDYVGSFVDTNSFNVFGNCKTVQKNFEVYPAENAIFEIAGVNGSISIKKHLD + PKVIIISRIKSSVPDGEGVVVFSDDPNNISVKVNSTALNVSVSHEIFIPDIKFKQITI + ENSNGKIYIEDSNSQEITAVTKNAHIELMGVNSDKISLNTKNGRIQLNYIIGDKIDIN + TSNAVIDIKHIKAKYINAITKNGRVNIENAQNVDTENDMDMYLKTSNGGIKVNMNDMD + SRVYKVKAHATNGTINLLIPEILYHNVNRKATGGSFIEAESKNYESGLSKVNITAETM + NGHVEIVK" + gene 285258..286337 + /locus_tag="Ccel_0255" + CDS 285258..286337 + /locus_tag="Ccel_0255" + /inference="protein motif:TFAM:TIGR00019" + /note="TIGRFAM: peptide chain release factor 1; + PFAM: Class I peptide chain release factor; PCRF domain + protein; + KEGG: cth:Cthe_2593 peptide chain release factor 1" + /codon_start=1 + /transl_table=11 + /product="peptide chain release factor 1" + /protein_id="ACL74642.1" + /db_xref="InterPro:IPR000352" + /db_xref="InterPro:IPR004373" + /db_xref="InterPro:IPR005139" + /translation="MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKECSDLEEI + VQKYREYTKVTKEIEEARELLEQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPK + DPNDDKNVIVEIRGGAGGEEAALFAGVLFRAMAKYAEKKRWKYEILDSNPTELGGFKE + VVFTIEGKGAYSRLKFESGVHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPS + DLRIDTYRASGAGGQHINKTDSAIRITHMPTGIVVSCQDERSQHKNKDKAMKILRSKL + YEIAQEQQINEVAQDRKNQVGTGDRSERIRTYNYPQGRVTDHRINLTLYKLEQVLDGD + LDELIDALITTDQSEKLGSGSDDEG" + gene 286434..287177 + /locus_tag="Ccel_0256" + CDS 286434..287177 + /locus_tag="Ccel_0256" + /inference="protein motif:PFAM:PF02535" + /note="PFAM: zinc/iron permease; + KEGG: cth:Cthe_2594 zinc/iron permease" + /codon_start=1 + /transl_table=11 + /product="zinc/iron permease" + /protein_id="ACL74643.1" + /db_xref="InterPro:IPR003689" + /translation="MEHILKITIVGLISGITGTGIGGLIAFFVDRKISNRLLSSILEF + SAGLMTSVVCFELVPEAVKISGLNLTVIGIGLGILVVILLDDMVKRLDSVKNTKGNSG + LLRTGILVSIGLALHNLPEGFAVGSGFEASVKLGITLTIIIVIHDVPEGIAMALPMKI + GGFSAKKAFLLTVLSGVPMGLGAFVGAVLGHVSQQFIALCLGFAGGAMLYVVFGELIP + ESKRIYVGRMSSVGNILGIVCGIIITMLN" + gene 287206..288285 + /locus_tag="Ccel_0257" + CDS 287206..288285 + /locus_tag="Ccel_0257" + /inference="protein motif:TFAM:TIGR00057" + /note="TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; + PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; + KEGG: cth:Cthe_2595 translation factor SUA5" + /codon_start=1 + /transl_table=11 + /product="Sua5/YciO/YrdC/YwlC family protein" + /protein_id="ACL74644.1" + /db_xref="InterPro:IPR004388" + /db_xref="InterPro:IPR005145" + /db_xref="InterPro:IPR006070" + /translation="MKTQVIKIDAENINENALKPAAEALKQGMTVAFPTETVYGLGAN + ALDGIAVSKIFKAKGRPSDNPLIVHIADREKVSELTSFIPDKAVALMDKLWPGPLTLV + MKKSSVIPKEITAGLDTVGIRMPEHPVALELIKLAGIPVAAPSANVSGKPSPTAAQHV + LDDLDGKIEMIVDAGSSRVGLESTVLDVSSDPPVLLRPGGVTPCQIEEIIGHIEIDKT + IMNKVTADNVPKSPGMKYKHYSPKAHVIIVESSDINKQAEVMCYLAEKYKKEGKKVGV + CATDQTFDKYCLYDTISMGDRNHPETIASSLFSIFREFDGRRADIILAEAVDQNGVGL + AIMNRMVKAAGYDIVKADLVNSIGG" + gene 288287..288793 + /locus_tag="Ccel_0258" + CDS 288287..288793 + /locus_tag="Ccel_0258" + /inference="protein motif:PFAM:PF01451" + /note="PFAM: Protein-tyrosine phosphatase, low molecular + weight; + KEGG: cth:Cthe_2596 protein tyrosine phosphatase" + /codon_start=1 + /transl_table=11 + /product="protein tyrosine phosphatase" + /protein_id="ACL74645.1" + /db_xref="InterPro:IPR000106" + /db_xref="InterPro:IPR017867" + /translation="MKENNPFSDSIKILFVCTGNTCRSCMAEGLMKEALKNSQHSKRI + IAASRGISAFDGDSASGHSVKALKTLWDIDISSHKAKILTNTETEQADLILTMTRQHR + DIIKNVYPQKKTQIFTLKEYVYPDLNPDSVGADIRDPYGMPYDVYEACARELQKCIKL + LLNKLSFF" + gene 288872..289321 + /locus_tag="Ccel_0259" + CDS 288872..289321 + /locus_tag="Ccel_0259" + /inference="protein motif:TFAM:TIGR00689" + /note="TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB + family; ribose 5-phosphate isomerase B; + PFAM: Ribose/galactose isomerase; + KEGG: cth:Cthe_2597 ribose-5-phosphate isomerase" + /codon_start=1 + /transl_table=11 + /product="sugar-phosphate isomerase, RpiB/LacA/LacB + family" + /protein_id="ACL74646.1" + /db_xref="InterPro:IPR003500" + /db_xref="InterPro:IPR004785" + /translation="MIAIGSDHAGYLLKADIIKFLESKGLEVKDFGTNCPDSVDYPDY + GRAVAEAVASKECEKGILICGTGIGISIAANKVPGVRAALCTDSYMAKMCRQHNDANI + IAIGERVVGPGLAFDIIETWLETEFLGGRHQNRLDKISDIEKKYLTK" + gene 289334..289963 + /locus_tag="Ccel_0260" + CDS 289334..289963 + /locus_tag="Ccel_0260" + /inference="protein motif:TFAM:TIGR01091" + /note="TIGRFAM: uracil phosphoribosyltransferase; + PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_2598 uracil phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="uracil phosphoribosyltransferase" + /protein_id="ACL74647.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR005765" + /translation="MENVFVFDHPLIQHKISLLRDKNTNTKEFRELVSEIAMLMGYEV + TRNMPLKEVEIETPIGMAKTKVISGKKLGIVPILRAGLGMVDGMLRLIPMAKVGHIGL + YRDPESLQPVEYYCKLPVDVEEREIVVLDPMLATGGSASAAIQFIKNRGVKNIKLMCL + IAAKAGIERMQKDHPDVGIYCASVDEILNDHAYIVPGLGDAGDRLFGTK" + gene 290014..290451 + /locus_tag="Ccel_0261" + CDS 290014..290451 + /locus_tag="Ccel_0261" + /inference="protein motif:PFAM:PF00383" + /note="PFAM: CMP/dCMP deaminase zinc-binding; + KEGG: cth:Cthe_2599 CMP/dCMP deaminase, zinc-binding" + /codon_start=1 + /transl_table=11 + /product="CMP/dCMP deaminase zinc-binding" + /protein_id="ACL74648.1" + /db_xref="InterPro:IPR002125" + /translation="MRPSWDEYFMQIVELIKTRSTCLRRQIGAVIVKEKRILASGYNG + APVGCKHCSEVGCLREKLNIPSGQRHELCRAIHAEQNAIVQAAYSGTSVSGATLYVTN + QPCVLCAKLAINAGIVRIVFNGDYPDELSMTLLSEAGIEVVRL" + gene 290586..292874 + /locus_tag="Ccel_0262" + CDS 290586..292874 + /locus_tag="Ccel_0262" + /inference="protein motif:PFAM:PF02350" + /note="PFAM: glycosyl transferase family 4; + UDP-N-acetylglucosamine 2-epimerase; + KEGG: cth:Cthe_2601 UDP-N-acetylglucosamine 2-epimerase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylglucosamine 2-epimerase" + /protein_id="ACL74649.1" + /db_xref="InterPro:IPR000715" + /db_xref="InterPro:IPR003331" + /db_xref="InterPro:IPR003524" + /translation="MSSVYEYFISFTLAFIVAFSATPAVKSLAFKLGVVDVPKDSRRM + HKNPIALLGGLAIIAGFFVSILFSVVSSKLLNVETALVFDTRFLGLIAGSLIIAVLGF + IDDKVALSAKLKFPIQIVAALIVALTGTRIEFVTNPFSVIGISTFGPWISYPLTVIWI + VGITNAINFIDGLDGLAAGVSSIASMSLFFVSVMRGNPDIRTAVLAAILAGSILGFLP + YNFNPAKIFMGDTGATFLGFVLGTISIQGTYKSYTAIAIAVPLLVLALPLFDTLFAIL + RRVASGKSPMTADRGHLHHRLVDMGLTQKQSVSVIYVASAALGLCAVVLDYKGPVSAI + ILVIAVAIFIVGGSMYMSEVNSASKAKEVHYLYNPSRMSIIGGRKLDRLKVMTIFGTR + PDAVKMAPLVKELERCDKIDSVVCVTAQHREMLDQVLKMFEITPQHDLNIMQSRQTLT + GITTRALEGLEKVMEQEKPDIVLVHGDTTTCFVGSLAAFYKQIAVGHVEAGLRTFDKF + SPYPEEMNRKLTGSMADIHLAPTQTNKENLLREGVSRDSIYITGNTVNDALKTTVKED + YTFQCEELKGIDFKNKRIIAVTAHRRENLGEPLHNICRALAAIVDKYDDVELVYTVHL + NPVVQDTAKEILGGKERVHLIPPLDVQDMHNLMARSYMIMTDSGGIQEEAPTLGKPVL + VLRKETERPEAVKAGTVRLAGTVESEIIEHASKLLDDKEDYDKMAKAVNPYGDGHASE + RIVNVLLYHFGLTDEIPEEFSV" + gene complement(292994..293773) + /locus_tag="Ccel_0263" + CDS complement(292994..293773) + /locus_tag="Ccel_0263" + /inference="protein motif:PFAM:PF00691" + /note="PFAM: OmpA/MotB domain protein; + KEGG: ckl:CKL_3788 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="OmpA/MotB domain protein" + /protein_id="ACL74650.1" + /db_xref="InterPro:IPR006665" + /translation="MAKEKVVKDTSERYLLTYADLMNLLLILFIVLYSMSQVNTEKFQ + QLSQSLSSAFGNGETAYVIQGGSSGNSLIDFPATMPSPVIPSKIEDQQMEALEKEINS + LVDSEGLKGNVAVTMQERGIVVTINEKILFKSGSAIIEPKDQDTVIKIGKDILSKIPN + KHIRVEGHTDNVPMKSTLYASNWELSAGRAINVLKLLVEKGGINPKMIHPVPYGEYSP + LVPNTTDANRAKNRRVDIVILRDSSSKGEANTDNNESSIAK" + gene complement(293776..294576) + /locus_tag="Ccel_0264" + CDS complement(293776..294576) + /locus_tag="Ccel_0264" + /inference="protein motif:PFAM:PF01618" + /note="PFAM: MotA/TolQ/ExbB proton channel; + KEGG: csc:Csac_1524 MotA/TolQ/ExbB proton channel" + /codon_start=1 + /transl_table=11 + /product="MotA/TolQ/ExbB proton channel" + /protein_id="ACL74651.1" + /db_xref="InterPro:IPR002898" + /translation="MDITTIIGLILGIGGVLGGYIEEGGNLGALLKIGPFLIVFGGGF + GATLVAFPLSEIKKMLSTINMLFIQKKYNEIDIINELADLSEKARKDGLLSLEQDAQT + NKNELIRKGLALVVDGIETEVIKDILARETELQEEIYESGVKIFEAMGGTWPAMGVCG + TVMGMISILKDLSDSDALGPKISGAFIATMLGVGTANLIWLPFGTKIKSKAARETMIN + EIIIEGLLSIQAGENPRIIKEKLNLNLMEKLSGAKNKSAVAAEEGAEA" + gene 294828..295226 + /locus_tag="Ccel_0265" + CDS 294828..295226 + /locus_tag="Ccel_0265" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74652.1" + /translation="MSNIIKFFCKRVLALYLVALIVCFFGKNQKLPMIIMLTISVTFS + LLKFAIHEYLLKHLSGSTNKKVGVIHTLLLYLFNLGIITITFILALSFGVNTLLAALA + GTLSVMIVIVINTITETLGITKNRFGEKVI" + gene 295226..295933 + /locus_tag="Ccel_0266" + CDS 295226..295933 + /locus_tag="Ccel_0266" + /inference="protein motif:TFAM:TIGR01131" + /note="TIGRFAM: ATP synthase F0, A subunit; + PFAM: H+transporting two-sector ATPase A subunit; + KEGG: cth:Cthe_2602 F0F1 ATP synthase subunit A" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F0, A subunit" + /protein_id="ACL74653.1" + /db_xref="InterPro:IPR000568" + /translation="MGEKLTHAMESHTAFYLKLFGLKIPVSDLVVTMWIIMAIMIVLA + IVLTRKLSLIPNKRQNVAEIIVEFINNLVKDAIPHHWKAFAPYLGTVMLFLILANTVS + IFNIIPGGEEGFKLRPPTRNINVTVCLAVMSICVVIYAGIRYNGVGGWIKSFAKPTPV + MLPFNILDYLIKPTSLALRLFGNILGAFIVMELIYMAFPIFAPAVLSCYFDLFDGILQ + AYVFMFLTSIYISEALE" + gene 295946..296176 + /locus_tag="Ccel_0267" + CDS 295946..296176 + /locus_tag="Ccel_0267" + /inference="protein motif:TFAM:TIGR01260" + /note="TIGRFAM: ATP synthase F0, C subunit; + PFAM: H+transporting two-sector ATPase C subunit; + KEGG: tte:TTE0631 F0F1 ATP synthase subunit C" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F0, C subunit" + /protein_id="ACL74654.1" + /db_xref="InterPro:IPR000454" + /db_xref="InterPro:IPR002379" + /db_xref="InterPro:IPR005953" + /translation="MAGTGIIAIAAAIAAFTGIGAGIGISLATGKAVEGIARQPEAAG + SIRTSLLLGAALAEATAIYGLVVALVLVFLKM" + gene 296368..296853 + /locus_tag="Ccel_0268" + CDS 296368..296853 + /locus_tag="Ccel_0268" + /inference="protein motif:TFAM:TIGR01144" + /note="TIGRFAM: ATP synthase F0, B subunit; + PFAM: H+transporting two-sector ATPase B/B' subunit; + KEGG: cth:Cthe_2604 ATP synthase F0, B subunit" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F0, B subunit" + /protein_id="ACL74655.1" + /db_xref="InterPro:IPR002146" + /db_xref="InterPro:IPR005864" + /translation="MLKPDGYTFIFVALNLIILFLFMRKFLFKPVTNLMEERKSSIEQ + GLKDADNAKLEATEARKKYDEQIKNIKLDGDKLLNEARARAAREYDEILASAKRDALA + IVEKGREEVERERAEMLKQVKQQIAVLAISAATKVVQQNMDSETNKSLVDKFIDEAGV + A" + gene 296853..297380 + /locus_tag="Ccel_0269" + CDS 296853..297380 + /locus_tag="Ccel_0269" + /inference="protein motif:TFAM:TIGR01145" + /note="TIGRFAM: ATP synthase F1, delta subunit; + PFAM: H+transporting two-sector ATPase delta (OSCP) + subunit; + KEGG: cth:Cthe_2605 ATP synthase F1, delta subunit" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F1, delta subunit" + /protein_id="ACL74656.1" + /db_xref="InterPro:IPR000711" + /translation="MPLVEKRYAQALLELSGSDINSIKEEFGDFTNLYNSDKDFRDFL + NNPVVKTDKKQALIRSVFTDRLSKNMLNMILLLVSKHRTAEIPGIFNQFIQMANETAN + VLDMKIIMAAPMDEVQLETLREKFKKKYNAVAVNSTEIVDESLIGGLKVIIGDKVYDG + SVKGRIESLTEIVSV" + gene 297404..298921 + /locus_tag="Ccel_0270" + CDS 297404..298921 + /locus_tag="Ccel_0270" + /inference="protein motif:TFAM:TIGR00962" + /note="TIGRFAM: ATP synthase F1, alpha subunit; + PFAM: H+transporting two-sector ATPase alpha/beta subunit + central region; H+transporting two-sector ATPase + alpha/beta subunit domain protein; ATP synthase F1 alpha + subunit; + KEGG: cth:Cthe_2606 ATP synthase F1, alpha subunit" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F1, alpha subunit" + /protein_id="ACL74657.1" + /db_xref="InterPro:IPR000194" + /db_xref="InterPro:IPR000793" + /db_xref="InterPro:IPR004100" + /db_xref="InterPro:IPR005294" + /translation="MRNMSLRPEEISSIIKQQIENYDTAVKTDDVGYVLQSGDNIARI + YGLKSCMSGELLQFENNVFGMALNLEEDNVGCVVLGDDRGIKEGSTVKRTGKTVQVPV + GQSLVGRVVSPLGKPLDGKGDIAVEEYRPVDFTAPGVVDRKSVNKPLQTGIMALDALI + PIGRGQRELIIGDRQTGKTAIAVDTIINQKGKDVICVYVAIGQKASTITGIVNTLEKF + GAMEYSIVVSSTASDPSSVQYLAPYAGCAMAEDFMYRYHKDVLIIYDDLSKHAVAYRA + MSLLLKRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETLAGDVSAYI + PTNVISITDGQIYLESELFHSGQRPAVNVGLSVSRVGGSAQIKAMRKIAGPLRINLAQ + YRELEAFAQFGSDLDKSTRDKLTQGERLVETLKQPLNATLPVEEQVLILYGATNNYLM + DLPVNKVGKFNRELVAYVKQRYPKILTSIAETGDISDEVSKLMKTAADEFKTQFV" + gene 299020..299904 + /locus_tag="Ccel_0271" + CDS 299020..299904 + /locus_tag="Ccel_0271" + /inference="protein motif:TFAM:TIGR01146" + /note="TIGRFAM: ATP synthase F1, gamma subunit; + PFAM: H+transporting two-sector ATPase gamma subunit; + KEGG: cth:Cthe_2607 F0F1 ATP synthase subunit gamma" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F1, gamma subunit" + /protein_id="ACL74658.1" + /db_xref="InterPro:IPR000131" + /translation="MANNMREIKSRIKSINQMRQITKAMKLISASKLKKARAQLEETL + PYYNKVKETIADILAHSAEVESRFFDIREEKEGKKKAYIVMAGDKGLAGGYNSNIFKL + TEHEIGDNKENALLLVAGTTGRSYFSRKEYHVHTEFDYAVQNPTVFRAREITEIILDL + YNKQEVDEVYIVYTQMISAISLEPRILKLLPIEISALREDVKADEIVLDQRLKYEPSV + TEVLNVLIPKYIKGIMYGTFVEAFTSEQNARMTAMDNATKNADEMLQKLNLYYNRARQ + ATITQEISEIVGGASALE" + gene 299963..301360 + /locus_tag="Ccel_0272" + CDS 299963..301360 + /locus_tag="Ccel_0272" + /inference="protein motif:TFAM:TIGR01039" + /note="KEGG: cth:Cthe_2608 F0F1 ATP synthase subunit beta; + TIGRFAM: ATP synthase F1, beta subunit; + PFAM: H+transporting two-sector ATPase alpha/beta subunit + central region; H+transporting two-sector ATPase + alpha/beta subunit domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F1, beta subunit" + /protein_id="ACL74659.1" + /db_xref="InterPro:IPR000194" + /db_xref="InterPro:IPR000793" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004100" + /db_xref="InterPro:IPR005722" + /translation="MAGSSGVIVQVIGPVLDIRFENGILPDIYNAIKIPADSGTVTAE + VMQHLGNDTVRCVAMSSTDGLVRGMKAEDTGDAITVPVGKEVLGRIFNVLGEPVDKAG + PVEPTAYLPIHREAPSLEEQRPSTEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTV + LIMELIRNIATEHGGYSIFTGVGERTREGNDLWHDMNDSGVIEKTAMVFGQMNEPPGA + RMRVGLTGLTMAEYFRDQMGQDVLLFIDNIFRFVQAGSEVSALLGRIPSAVGYQPTLA + TDVGALQERIASTNKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRDIVAMGI + YPAVDPLESTSRILDPKVVGEEHYTIARKVQEILQRNKELQDIIAILGMDELPEEDKL + TVFRARKIQRYLSQPFFVGEQFTGYKGKYVPIKETIRGFKEIIDGKMDNISEAAFYMK + GTIEEVYEAAKEMEG" + gene 301416..301820 + /locus_tag="Ccel_0273" + CDS 301416..301820 + /locus_tag="Ccel_0273" + /inference="protein motif:TFAM:TIGR01216" + /note="TIGRFAM: ATP synthase F1, epsilon subunit; + PFAM: H+transporting two-sector ATPase delta/epsilon + subunit; + KEGG: cth:Cthe_2609 ATP synthase F1, epsilon subunit" + /codon_start=1 + /transl_table=11 + /product="ATP synthase F1, epsilon subunit" + /protein_id="ACL74660.1" + /db_xref="InterPro:IPR001469" + /translation="MATFFLEVLTPDRKFFSGEAECVIFKSSDGEMGVLAKHAPTVSA + VSVGPLRINAQGKWIEAVVTEGFAKIMPDKVVILTDTAEYPEEIDINRAKAAKQRAEE + RLQKKLSQLEYMRSKTALARAMARLSATNRRR" + gene 301963..304302 + /locus_tag="Ccel_0274" + CDS 301963..304302 + /locus_tag="Ccel_0274" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; Fibronectin type III + domain protein; + KEGG: cth:Cthe_2454 fibronectin, type III" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL74661.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003961" + /translation="MISKKGKKIKHISKLAIMLVIAILTQSLVTFSTAAGTVKSNITA + LIHNTYLVTLNWNDYLTNEINYYLERSVDGGIFSMVSFSAANLTTFTDSSVQPGHIYT + YRVKVLDSSYTTYVYTDEISIRTDELIKLDSLTATAVSSNQIDLKWTYPEGKIGNTII + ERKMEGSTSWSEVARITAGQNTYSDKSIVSGTKYYYKVRSYSSENIKSAAYPDEYVGS + SAVSLLLKPSNLSGFALSGYKIQLKWQDVAFETAYIIERRASNEGAFTEVAVVPQNTT + RYIDNVAHENSVYSYRIKALTGVTDSEYSDILNVASTYLKPPSWLTAVSVDGEKINLS + WQDLTTNETGFEIWRKTVSETDYTLYDTMGRNANSYTDLNVSPQTNYYYKVRAKINDN + EVYSDFSNETSALTTSLSAPANLSFNVINKTEVELTWDDTSSMEAGFIVEKKIGLLSQ + WYQISQLEPNTTKFNDKWISSTETTFYRIKAFDRSTAVSYSNEVQLSLDAPEAPSNLQ + VSVMSTNDAKLTWKDNASTEEGFIIEAKQLYFYREIGRVDSNVTTFIYHDAIPGKTMR + YRVRAVKGLVQSNPSNEVAAATFTNTSYTDLSSVSWAVEAINNLASRNVFNSNSGKFG + PKQTISKGEYCAILVKSLGLEKTVAGRFNDVTAKHKYYKEIMASEYFGIISKDKNNKI + YPDKLITREQAAVMLALALKIKGTPLPEKDSSSLKQFSDFKSISDSSLRNISAVCGAG + IISGRKINDKVYLQPSNNVTRAEAVLMAYKGLIYNQGNQ" + gene 304322..306814 + /locus_tag="Ccel_0275" + CDS 304322..306814 + /locus_tag="Ccel_0275" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: drm:Dred_2357 S-layer domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL74662.1" + /db_xref="InterPro:IPR001119" + /translation="MKRYAKKISLMLAVVCFLVIPLSAFAATGTSYSNYTASLLSKWK + GYGVVDKSYSSLDLNKPIEKIDFIKMLNAILKTSKKADINFTDVHKNSWYGQEIAKAA + ACGYISNKENTKFYPFSNITRVEAAEMVSYVFGLELKNEKILSKIADGKALEKKQLNE + LAAVIEKGGLTEVASGRYAPTGVLKLKDALIMLDKCVGQIALKSGTIKTNAAGNMFIS + VGAVTLRGISISGDLIIGEGVGDGVVTLESVKLAGRLIIRGGGPNGVIIKNSQIGGNL + IVEKSAGNVYIRVVGSTTIKQAYLKSGCTIEEGYLTSGDGFVNITALNAAFDGQNAIL + KGDFKSLTADNSNINLKLSGNAENVSLNKDSQGIFSLLSGTVKTVSAGVTKQQLEFLG + GKVTTMNISKDAKGNKITINGPVEINTVNIESTTEISFKKGTVNSLILDTNSQGSYIS + MQSGSFIRSFVIMADAEITGYGKIESAYSYANNVKMGITPSFYSYKYVPGWGNDDYLP + SIGIGVPGATNDEITIQEGKSIDLYRDLNLSVSPDKSTVGFVSLNGNVATVSDKGLIT + AIEAGYTKIYITGQYSGYSNCIKRIDVNVTPGNVTLPGRLEISPVTGEAATVKDFEIT + YTSKDDFSNGTVTFWLPDGFPAFETDTVKIGNGTEVTLNPSQRLNVRTLSFTNLNLSK + GQKIIVKLRNKTVPQGGEYVFSAVTDADGTGPKVPTSGQDERTVFTSDKLKTLLEVTN + YTLSAYDAQNGAVSFTKLSFAGFTGATKWLIAVQDGEFTHPGYDDLVSGTEYTVGSAI + TIAPNQHLMLAAVDGDSMAGYKVKAFVDITVH" + gene 307041..311933 + /locus_tag="Ccel_0276" + CDS 307041..311933 + /locus_tag="Ccel_0276" + /inference="similar to AA sequence:KEGG:Cthe_2611" + /note="KEGG: cth:Cthe_2611 fibronectin, type III" + /codon_start=1 + /transl_table=11 + /product="fibronectin, type III" + /protein_id="ACL74663.1" + /translation="MKTKLRFVSVMLVLSLILSNFSGIIQPVFAAPDVLNFSINQSTF + DENAGTVRASWNGQLNVTGTITYEAPTALGNKTVSINVTAGIGTVLLTDIKKDYIYDI + KVSLTNPSSSYVAQKFYLAGISVYAEQIRQQYVDHPGGGRETGVYPAMKLSWKLPLIH + DGVNAFVPAKGSILSKIAPAIDRINYKFHMETSKTKPNLADVIVNMKDDGSGYTAMVS + GDTTRVSEVKWDNAQSEYSLYLFGVKDDETSIPTIQQLKDGTATIPTGIPAADVAYVL + PHQEIRPGCIYVVTMDALVCDQNGQYVSKALSGATTSPLTGIVNYTYTPVRFQLTKDS + MDNILIRINTVNLGDVSMPELSYFVQTSNVDSDDDSDWKNIKEITNISGEYTITNLQG + INPKNTVYYRIVVKSASVDDTIMSLSMPYRMLDDTSKTPVPKNVSVIGVNLSDTIPSE + TERTSDIKIVWDKPANWDDTKDDDVYYHFMLSTGQKDLDPAVKYPLTANGKDYGNGNY + AVKYRLVQYVSTKSGLIKENANDNTKLEYTIKGLDLFKGFEGDGTVTPINNPDAYPEY + LLPNKTYYLQVYTTLPADKGNTDDSSRMSEKSLTTSFTTLSLTSRDVPTPNNFQLVNT + KVNTATAATPANAVITLRFEDLKIDWSKYTSNHSIADDAVIYDLYMSKQPDLNTFKLI + GSSNQPDSDVEFRPVISGDTTWINTIINEFSDISNINSFGYYLSPNTIYYFMVKVRLN + LENEVPKIRESTQTNLLSVTTPRGEPTKPNDNAKKPVAPSDFAIALDKNGNPMVSGHS + VTFEWTVKENEASYNLISTAKKVALDTPDTDPSILEDSTYISYIAAFGDKDRNIDGNS + KKLTLDPKASPLPPNLVYDSKTKKCRYTINTWLYPNRVYYFSLRSEVVEANKSKSSVW + ISIPVTTSLIESPTRLQTISDCELSFYWFDTNPQTTSDSYSIKIKAAGDKYYTQLTKA + QYNIVKDGSVYYGRLYKLKSNTQYNIQVVRTIDNAVLSNTTQSTRNDHYQIEVKWQGI + AVDDYSGYEIAIKTEDDTDYTVLSNSDLEQYIDVTRHTYPYYIEKTFSNIGTEYYTYT + ARIKYAEVTLPSGAKEHKPLKPNTKYYIKVRAYKKDPSNLEAITRSKYIGPVNTRTEF + NQGDYDDDDNNTSITSKFLDMLNKLEQELFWNVNKGSSSTMEKFYVKDDKVVNLLEGP + GYYSCTIDISQTPAYINTNEVYMAKNILSAMKTYNKSVVIKTKDVEYTIRPDTFDINN + MEEFKKAKAAAGAKDVYLKLDNIKTGEVQPKAPANTTTVSKVDIITAQAVVSRETSEN + IQKMIKDKLYNEDTGIIKKKIDVIKNPNNPNTKGNGTNIDKYLNQLLEEIKSELSYFI + NDTLNGANYSYGLFTEKYDIAEYNSPMSVKMSYKGNTIANPYVLYGNAGNWHKLTQNL + KYDTGYVTFFVASPGKYTVFAGKDVTSTIGDESPAKPYITKLAGKYDLTFVFSGAGES + YNPNLSVSVKEAIMLYELVSDLQVDSTTDIKIKAKNYGLDKIINVSNVNRNITRQETA + ALIVMLYCQRTGADYSRLKASYNKIIRDDAAIGTKYAVPVYACLNMNIMTLDTGAKFN + PGMSINRKDIAVAFEKMLEA" + gene 311987..315943 + /locus_tag="Ccel_0277" + CDS 311987..315943 + /locus_tag="Ccel_0277" + /inference="protein motif:PFAM:PF00041" + /note="PFAM: Fibronectin type III domain protein; + KEGG: cth:Cthe_2612 fibronectin, type III" + /codon_start=1 + /transl_table=11 + /product="Fibronectin type III domain protein" + /protein_id="ACL74664.1" + /db_xref="InterPro:IPR001969" + /db_xref="InterPro:IPR003961" + /translation="MKTKRIFAALILLIFFITTYGTVYAAPIDVPIPAAPTQLVIPKI + IPSTEPSIGYDSADGGKSGYYADIQWQVPNPMGKFVNIYLQESPKEYRTARPTYLKEK + DLPAGTTPIRMRDLTSGTVYTASSKAYATDVDPVTGQVYKSGESDSSNLVKFMTDINI + QCITSGTNKIKIIWDDVWNDGKRINYQLYVSENRDFANTLPITVTQEQISKSGPVYVN + QSDGTLEYEHTVKDPGRVYYVKIVPVISDQSIIKTSQTKTILVSTYILVKTSRVSTTD + DGTIWRLDWSPVITGLSSSNITVQYQINRFEADNMPKIIMVETGTTTFITVPEGQENS + YMIRAIVKKDGLPYYPSNIDIVSDKVTLKESDVPATPSAPELVSQFKDSTDSVIIAYE + DVKDINGVVIKKGELGKDTATILWRLPKKADGTIDSDVMYDLWLLEDSNLIDDPPVET + KIQTNLKPGTPNFVKDESNNGKVIGYKYKIENLQPNHTYYFRIAAKKTFAEEKEGIIQ + NVEHISTPALKVIVTLPGGFIDTPLIPSNPPLQIRKQEDGIKDMITDTSVTIQLKNRW + FERFDPNTGIWSYIQADKTSMSDTPPYNPQTTPPDNQNYRKVEYDPGVTLYVGCTEYT + SGIDISAINTYKLEKVSTTPNDDLEDMYLNVPENVPVPASGTPVYAKHNVVVPVKNLK + PNTTYILWVRASRDGNPPLFSDISNPIIFTTLPTPSDTIEKPVVPDLRSTNVSDTFAD + LAWNYKEQNTYYIKYGTVDDITKAQGSLTVTGAQIKNSGLDYVRITGLTADTQYYFWI + QAEAFNSSLSASEKSEWSDSLPLRTLKLMPPSTPRGFGVKNTADAVTKNSITFEWIQE + PGLTYILEIAGKIDYSDAKVYECGSVTEFKVEGLTSNFRYYARLYAYDPNKKLRSLPT + QSISVRTLRSSDDYDSDQDVDHPITGDVIEKAPTIVNGTWVVKITGVNADRLVQIMMT + DNILDYTVDISKPPAPATNISLMISKKVFDKLDQLKENIAFKTAVVTYNLKAGILSNV + NTADTKKEQIYTFNIALAPQKPSARANELILRQPLAQMGVTLDTGASIMTISGFDRPL + IISYPYTNSKDYVEGQTLGYRYNGVTSSWEQKATSNRFDVDNRKGTISFQSAVPGLFA + LADRTNNLFDDIYGHIYEDAILNVAMAHKLKSITSRMFNPDKAATAGEAVKLAFDSLE + YSYGSNYMDLAAKTGLAKVGKTASAVLTRQDAACLAAVLYEMKTNTRVNGNKDVISTY + KDYSKIDKTLLNKVAFAAENGFLPYQSSTLFNPTQSVTRGELMYMLEKALVLAGDI" + gene 316018..316866 + /locus_tag="Ccel_0278" + CDS 316018..316866 + /locus_tag="Ccel_0278" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: cth:Cthe_2613 S-layer-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL74665.1" + /db_xref="InterPro:IPR001119" + /translation="MKKSITRHISILLATIVLLTIGVQDVQAHGVTVTTQKIEGKYRI + TLASQESGLGVNILAFSISNGKTINVAYTLKKGAAASASTEIDESIVLAPFRVITTNS + DNINKRPFSDIANTEFDEYIRHLHDVGITSGFSDGTFRPGNTLSRAEAAAMLSVALNL + KPDDSPNTKLKDVNGHWGKKYINAILNKGIMTGYSDKTFRPNNKITVAEVCTIISKSF + SFKTKSQGIFGKLKKNQWYSAYVQNVFNLKILTIEDSIYKNFTENGNISRGNFAMMLS + RALSTF" + gene 317002..317754 + /locus_tag="Ccel_0279" + CDS 317002..317754 + /locus_tag="Ccel_0279" + /inference="protein motif:PFAM:PF08680" + /note="PFAM: Protein of unknown function DUF1779; + KEGG: cth:Cthe_2614 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Protein of unknown function DUF1779" + /protein_id="ACL74666.1" + /db_xref="InterPro:IPR014794" + /translation="MRKFSFVLLSILLIIAILGTAFYILGKDNPDGRQISIKDAFNYS + GAKMIVNDLYFFARASDDYNTVSELSKVCEDVFKTLEISQYSKNTNSSDNLAKKEMHG + TTADGVKVSAMASIVGNKSGNRDKYITIDATEAGDGKALLLREKIEGVFTKYRLKAEI + NSCITGTYEGDLSDNQLESICRKILNESSAKKIDSFRQQNEISVSAFSPLISDKLRVG + GKNVNLGIAFRYNKLENRTYLWVATPVVNAEY" + gene 317817..319079 + /locus_tag="Ccel_0280" + CDS 317817..319079 + /locus_tag="Ccel_0280" + /inference="protein motif:TFAM:TIGR01072" + /note="TIGRFAM: UDP-N-acetylglucosamine + 1-carboxyvinyltransferase; + PFAM: EPSP synthase (3-phosphoshikimate + 1-carboxyvinyltransferase); + KEGG: cth:Cthe_2615 UDP-N-acetylglucosamine + 1-carboxyvinyltransferase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylglucosamine + 1-carboxyvinyltransferase" + /protein_id="ACL74667.1" + /db_xref="InterPro:IPR001986" + /db_xref="InterPro:IPR005750" + /translation="MAKYVISEGVPLRGSVRVDGAKNAVLPIIAASLLSESKSIIEEV + PDLNDVRIMCDLLRCLGTDVQKQSDPTTISFETKEITNSTAPYELVNKLRASFLVMGP + MLARTGYVRVALPGGCPIGSRPVDLHLKGFSALGAEITQGHGYIEARKNKKLVGNKIY + LDFPSVGATENIMMAAVMAEGQTIIENAANEPEIVDLASYLNEMGAIVVGAGTDTIRI + EGVTSMKGCTHTVIPDRIEAGTFMIAAAITNGEVRIENVVPDHLKPVVAKLKETGLEI + SEELSAITVKSIGGLKPIDVKTLPYPGFPTDMQAQVTSMLSCIPGTSMVIETIFENRF + MHISELKRMGANIKIDGRTAVIEGKPCLTGACVKATDLRAGAALVLAGLAAEGATEIS + EIQHIDRGYSGFAEKLKSLGAKITRVED" + gene 319266..320291 + /locus_tag="Ccel_0281" + CDS 319266..320291 + /locus_tag="Ccel_0281" + /inference="protein motif:TFAM:TIGR02870" + /note="TIGRFAM: SpoIID/LytB domain protein; stage II + sporulation protein D; + PFAM: Stage II sporulation D domain protein; + KEGG: cth:Cthe_2616 SpoIID/LytB domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="stage II sporulation protein D" + /protein_id="ACL74668.1" + /db_xref="InterPro:IPR013486" + /db_xref="InterPro:IPR013693" + /db_xref="InterPro:IPR014225" + /translation="MKKVITYILLMAFIVVLVPFMVVQFNGKEVGPVQIQDKEKSNVT + PKQETAITINVYMHTQKKTVKMYLEDYIKGVLAAEMPAEFEIEALKAQAVAARTYALG + RAVKLYGSVGVHDDADVCTDSRHCQAWKSKEQAMENWGLLSSFKYWNKITRAVNETQG + QVIEYNKVLINPLFHSNSGGYTENVEDVWDGTSEPYLRGVKSVGEDEFREYKSVIELL + ESDMIKILKKNNPKIQIKGNNLFANIKINGYSSGNRVLSMDIGNVKVKGTDFRKMFNL + KSTNFKLKKLAGGKISITTYGYGHGVGMSQCGANYLAQQGSHYKEILKYYYKGVEITR + LDSSQKK" + gene 320377..321168 + /locus_tag="Ccel_0282" + CDS 320377..321168 + /locus_tag="Ccel_0282" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: cth:Cthe_2617 peptidase M23B" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL74669.1" + /db_xref="InterPro:IPR016047" + /translation="MKKLIPDENNWKNKLSKFFSSKGFYVVLAVCIIVVAATAILLTT + QNMKDTGKIIPGEAANASQDEATKAVSGKLDKTKAANNNTQSAASETAKSTPTPPKSG + ESKSSKSASANAVIKFSCRPVDGPIMKDFTRDINTFSESKTLGDIRAHDGIDFKVEKL + TKVRAVASGTISKVEDNTNGITVEITHSNNLKTRYAGLSKQNLEDISCGLKVKANDII + GLVGDPIQIECEDGPHLHFQVLKNGKSVDPSPYLSVPSTADKQGK" + gene 321360..322490 + /locus_tag="Ccel_0283" + CDS 321360..322490 + /locus_tag="Ccel_0283" + /inference="protein motif:TFAM:TIGR01205" + /note="TIGRFAM: D-alanine/D-alanine ligase; + PFAM: ATP-dependent carboxylate-amine ligase domain + protein ATP-grasp; protein of unknown function DUF201; + D-alanine--D-alanine ligase domain protein; + KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase" + /codon_start=1 + /transl_table=11 + /product="D-alanine/D-alanine ligase" + /protein_id="ACL74670.1" + /db_xref="InterPro:IPR000291" + /db_xref="InterPro:IPR003135" + /db_xref="InterPro:IPR003806" + /db_xref="InterPro:IPR005905" + /db_xref="InterPro:IPR011095" + /db_xref="InterPro:IPR011127" + /db_xref="InterPro:IPR011761" + /translation="MSKKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGIT + KSGQWLKYDGPVEKIGNGDWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKA + PIDVIFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQ + GDYLVFNRKQVYNRIEDVVAQIEGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNI + AAKNDRRILVEEFINGREIECAVLGNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKV + VIPAPNLSKETVEKIREYAVRAFKCLDCAGLSRVDFFVHKETGEIYINEINTLPGFTQ + ISMYPKLWAASGIPYSELINKLIELAFERYEDTRREYTNTLD" + gene 322562..323029 + /locus_tag="Ccel_0284" + CDS 322562..323029 + /locus_tag="Ccel_0284" + /inference="protein motif:PFAM:PF09148" + /note="PFAM: Domain of unknown function DUF1934; + KEGG: cth:Cthe_1936 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Domain of unknown function DUF1934" + /protein_id="ACL74671.1" + /db_xref="InterPro:IPR015231" + /translation="MNKDVIINVKGVQTGDENDPNTTELITEGKYYQKGGNYYITYKE + SEVTGMEGTTTTLKVGEGIVTLIRFGKVNSQFVFQKGQKHVSSYNTEYGSFTVGVYAN + NVDININETGGEIRIGYQIEIDNQGSGRNDFYMLIREAGTANEKYKLGNTSAN" + gene 322992..324686 + /locus_tag="Ccel_0285" + CDS 322992..324686 + /locus_tag="Ccel_0285" + /inference="protein motif:TFAM:TIGR00456" + /note="TIGRFAM: arginyl-tRNA synthetase; + KEGG: cth:Cthe_1935 arginyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="arginyl-tRNA synthetase" + /protein_id="ACL74672.1" + /db_xref="InterPro:IPR001278" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR005148" + /db_xref="InterPro:IPR008909" + /db_xref="InterPro:IPR015945" + /translation="MKNINSEIRQQIRNAVINSINKSVETGELPSLEVTDITIEIPRE + KGHGDFSTNVAMQITKAAKKAPRQIADIIIKNIVTDGTYIDKVTCAGPGFINFTLDNS + YLYETVNIIQQEKENYGRINIGNGKKVMVEFVSANPTGPLHMGNARGGALGDCIASVL + DAAGYNVTREFLINDAGNQIEKFGTSLEARYIQLIKGEDAIEFPEDGYQGEDITEHMK + DFIAIHGDKYINTDSEERKKVFVDFALPRNIARIKEGLESYGIHFDIWFSEQSLHKSG + EVAETIQLLKDRGCTVEKEGALWLKGSVIGSEKDEVLVRNNGIPTYFAADIAYHRNKF + EKRGFEWVINLWGADHHGHVARMKAAMAALGINPDKLDVVLFQLVRLYRNGEIARMSK + RTGKSISLMDLVEEVGRDGVRYFFNTKASGSHLDFDLDLAVKQSNENPVFYVQYAHAR + ICSMFKLLESEGIKVPSANAIKAELLDKPEELELIRKLSEYPDEVRISAETLEPSRLT + RYVHDVASTFHSFYNACRVRGEEEELMQARLVLVDCTRIVVKNVLDLLSITAPERM" + gene complement(324732..325658) + /locus_tag="Ccel_0286" + CDS complement(324732..325658) + /locus_tag="Ccel_0286" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: cellulosome protein dockerin type I; + polysaccharide deacetylase; + KEGG: cth:Cthe_2972 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL74673.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR002509" + /translation="MFNLRKALKGLLAVSLIAASVLVMSPVSKAADTVKYGDVNNDGV + VDSIDYATVKSYLLGKGTIANLTAADTNFDKAVDAIDFANLKKFLLGTITLPVGTPPI + TGKVVALTFDDGPDVTLTPKVLDKLDKYRVPATFMMIGQKINDSTAPVIKRIISSGSE + IGNHSWAYDSMSGMSYSAIKKSVDDTTAAIVKYSGTTPKFFRAPNLATGGSMFDAIDL + TFAGGVTCNDWVQSTTAQQRADAIIAGTRDGAILLMHDVQPLPHPTPEALDIIIPKLQ + SQGYTFVTLSDLFKIKGVTLSPTDSKIYTYVP" + gene complement(325968..327662) + /locus_tag="Ccel_0287" + CDS complement(325968..327662) + /locus_tag="Ccel_0287" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cbh:CLC_2681 methyl-accepting chemotaxis protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74674.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MKIKTKLVLSFTSVLLLFTLSISLLIYFMVSSMVKNQYQYNIKS + SASLSLAFLDERYPGEWKVVGGSLLKGDHVVNEDTQFVDNIKKSTGNLATIFMNDTRV + STNVLQENGQRAVGSKASKEVIDTVLKKGNDYQGVTLVAGKNSFTYYTPLRDGNNKIV + GMWFTGIDKSVVDNQIKDNLTKIGVVVLIILLIGATISYYIGNKMSKAIKKINDCLIK + FSEGDFSVSLPDSVLKISSEIGHMARCANTLQDSVKGIIRTIYNESNNIDESLGMSVV + SISDLNSSIEEISATTEELSAGMEQTAAAMQEMSATSSDIETAVENIARKAQETSFAA + QDISKRADMLKISSKESKDYAYSIYESANSELTTAIEHAKSIEKIGVLSDSIMQITTQ + TNLLSLNAAIEASRAGEAGKGFAVVADEIRKLAEDSKNAVSEIQGVTKEVFTAVENLV + TSSKNILSFIESTVISDYTNQTASSEQYSDDASRIDNLVMDFSSTSQELMVSIGNMLK + AINEVTVSVNESATGTTNIASRSSDIHIKGSQVVELSEASKKSSENLRKYVAGFKV" + gene 327909..330629 + /locus_tag="Ccel_0288" + CDS 327909..330629 + /locus_tag="Ccel_0288" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1932 S-layer-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74675.1" + /translation="MNLIKLKNVKGKKLISRAAAAILSMTLISQTLAVGAANEKIINS + FNAVPTGQAIINNLKYTDIAGLDNNSKNSIFQNGSLGIYISPGSKKFNPKGYITKEMA + LYLIYTAANRVSEVDEQGQALNTDRPVKKTNPQDVLFDGSLQLAANDGLISETDLADA + MQANQKTLGASDFKRNSPVQRQEFATWIAKALMIPPEPQQQELLNNFSDWKSCKPENV + PYLEAVLRAKVMNGNGSGKFLPQGMVTRQQAAAILKNAENIILPLRDLEQRNATVEGI + QSGRDSSNGSTTDYNTITIRNSDGLLDEITVTKSSRKPVSNTNELTGSATASYSSELP + VFKNGKITGSSDLKAGDRIQYISGTEDKIVRYVRVLAKNEVAPEEVEKGLYAGIVEEN + NPQLGYITLYNEDGTGKTPLALSKIRTYNYADPNDIKAYKNHVEARLDDIEAGDTVFI + RVDSNNLVTSVSGVDNYTVRYGKIISKKLSSIIVEADKKQQTYNIDRANVIKDGKLVK + YSQLKDGDSVKLLINEAPNMTVLKEITVEGGDKLVSNVYKGTFDYYNSISNTIFMNDP + WTLRNGQWVKETNGSKVIELGNGFTAYFDGQKRALKDLTLLKDNTVYIASEKDYGNDE + LAVVASFTDSTDKEVPYDDKVYITATNRFVLEKNFVNITYNPGTIVIKDGRLVQGSSV + STDDYAYVMANRDNSGSNSTIVAGVVSIEQRPGTEAVQLYRGRISSIDEYKTVTLESY + SRLNGTNWVYANTPMTFNLSSNTRITDTDGIVGQGDFTDEKTQGTFSGRTVYILGDGT + DAVEISTAPFGNFNIQGIVSNTVGGTVAEDGTVIQEPQSIILKNCRYYNTSAHLWVSK + GDSNFNILTNSLILKNNKKINPSDLKKGDSIRVLKKDNAVIGDAYIVIVE" + gene 330655..332259 + /locus_tag="Ccel_0289" + CDS 330655..332259 + /locus_tag="Ccel_0289" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: cth:Cthe_1931 S-layer-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL74676.1" + /db_xref="InterPro:IPR001119" + /translation="MRNTFYQRNKKYSILTKTAGFVVSAALIIGMATPGTAYALRGDS + GYEGGISSGENPNVTVTLTTSKISYQYQEPFFLTGVPIVLTGTMTVNKKLNTDSKTGV + QTLTTTYDYNVPNSNNNSLVRKIVMTTTITPRDNGQKTETTKLTSASETLKLNGVSYY + ISKSNPNDYMISKAITNDYQPAVSYFAGTLIGKKTYHVGSSTSPNTIVVDSTCNTVGY + DEYWSTAETQIIKQTITSRKGGQAAIVLGNANIDISTTTTKQLKYYENQPEQISFEGG + YYKTQYNENVLKYTANLKELDKNGVPTSKTVTYTRSLKLESFPFNDPLVAPNLKKIKG + HPAEESMAIMFGLEAYKNIDSFNPQEYMSRGEFIDAFSKVAPAVPLDPVFKPKTTKSS + SRKKAPVVLLFKDVPEKNKYFSSINDAANRGIVSTGGNFRPDAKITLAEAVTMMINSL + GLKGLAPNPSPVTRFKDNDKIPGYARAPMYVAEKIGLIQEDSRGYIYPTAKITKANAA + RIMKVYIEYMNSGIRKEYMERIISYK" + gene 332286..333752 + /locus_tag="Ccel_0290" + CDS 332286..333752 + /locus_tag="Ccel_0290" + /inference="protein motif:TFAM:TIGR00225" + /note="TIGRFAM: carboxyl-terminal protease; + PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding + domain 1 protein; peptidase S41; + KEGG: cth:Cthe_1930 carboxyl-terminal protease" + /codon_start=1 + /transl_table=11 + /product="carboxyl-terminal protease" + /protein_id="ACL74677.1" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR002477" + /db_xref="InterPro:IPR004447" + /db_xref="InterPro:IPR005151" + /translation="MNKFRRITVLFLVISISLMVFTSTAFSADSKTTDGEYLQSIIDL + IKQKYNGNITDDELLQGALKGMFNTLDQYSQYYTPEEFEEFYGSLEGAVEGVGISIEK + IDNNLIVNKVFANSPAKKAGVLSGDRIVQVNGESVQGKELNEVVSKIKGMSGTKVKLG + IMRQGTKNLITLEMYRAQVDLPSVHYELRGNIGYIHIDSFSQNSSKGVSEALKYFDGK + KVTRIVLDLRNNPGGYLDQAIAIARYFVPKGIITTLDYKDTLLEDKIYYSDLEKVKYS + LAVLVNENTASAAEILTGAIKDTKAGVVIGSKTFGKAKVQESIPILTDEAFSKFNEGS + EKKSANAYDFKSYMTDLSGWAKMTIGLYYTPNGNCIDLKGIEPEIKIKEPTPFGIHVN + LLEPMSVTVKPSLGTQYYDVLSAECVLKLLNYNIGTPDYILDANSVEAIKKFQKSNKL + SSSGILDFTTQKLLNKKIADIKLKQDKVYSRAISELMK" + gene 333929..335533 + /locus_tag="Ccel_0291" + CDS 333929..335533 + /locus_tag="Ccel_0291" + /inference="protein motif:TFAM:TIGR00337" + /note="TIGRFAM: CTP synthase; + PFAM: glutamine amidotransferase class-I; CTP + synthase-like; + KEGG: cth:Cthe_1923 CTP synthetase" + /codon_start=1 + /transl_table=11 + /product="CTP synthase" + /protein_id="ACL74678.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR004468" + /db_xref="InterPro:IPR017456" + /translation="MSVKYIFVTGGVVSGLGKGITAASLGRLLKARGVHVTIQKFDPY + INVDPGTMSPYQHGEVFVTEDGAETDLDLGHYERFIDENLSKNSNITTGKIYWSVISK + ERKGDYLGGTVQVIPHITNEIKDRIYRVGKSERTDVVITEIGGTVGDIESLPFLESIR + QVSNEVGRENVMYIHVTLVPYLGISGELKTKPTQHSVKELRSIGIQPDVIVCRTEKYL + SQDMKEKLSLFCNVPEGAVVQNLDAEVLYEVPLMLEKEGLAKIVCKRLGLECKEPDLD + EWEEMVRRQKNPKSSVTIGLVGKYVELHDAYLSVAESLRHGGIGNDVEVDIRWVNSEE + IENGEVNSFLQGVDGILVPGGFGDRGIEGKINAITFARENKIPFFGICLGMQMAVVEF + ARNVAGLHDANSSEFGETPYPVIDLMPEQREVDEMGGTMRLGVYPCKINENTLIKGIF + EDELIYERHRHRYEFNNEFRDTFIKNGMTLSGLSPSGKLVETIELKDHPWFVGVQFHP + EFKSRPNKPHPLFKDFVRAAYEYKTK" + gene 335773..336459 + /locus_tag="Ccel_0292" + CDS 335773..336459 + /locus_tag="Ccel_0292" + /inference="protein motif:TFAM:TIGR02837" + /note="TIGRFAM: stage II sporulation protein R; + PFAM: Sporulation stage II protein R; + KEGG: cth:Cthe_1920 stage II sporulation protein R" + /codon_start=1 + /transl_table=11 + /product="stage II sporulation protein R" + /protein_id="ACL74679.1" + /db_xref="InterPro:IPR014202" + /translation="MNKSLSLKPTKILSVCITIAILIVFSLWMLSYTYAEDVNAGLSQ + NLVRLHVIANSDSASDQALKLKVRDEIIEYMKEKLSDSRNIDQTKEIINQNLLNIENI + SKEVIKKNSSNYSVKASLGNYSFPTKTYGDIALPAGKYQALRIVIGQGSGANWWCVLF + PPLCFIDATHGTIPDSVKQNLKTSLSDEEYKLITTSDEEIPVKIKFKLVEFLEGSKVK + LSGVINKMFN" + gene 336602..337297 + /locus_tag="Ccel_0293" + CDS 336602..337297 + /locus_tag="Ccel_0293" + /inference="protein motif:PFAM:PF02308" + /note="PFAM: MgtC/SapB transporter; + KEGG: cth:Cthe_1919 MgtC/SapB transporter" + /codon_start=1 + /transl_table=11 + /product="MgtC/SapB transporter" + /protein_id="ACL74680.1" + /db_xref="InterPro:IPR003416" + /db_xref="InterPro:IPR017441" + /translation="MLIINWFSSNSEFYLSMIIRLALACLLGGFIGFEREHVHRPAGF + RTHILVCVGSALVMITSEYIYYHFSSHVNTDPARLGAQVISGIGFLGAGTIIKEGISV + KGLTTAASLWAVSCVGIAIGIGFYSGAFIATAFIFLTLVVAKKTQSRRTVKKSLRLYV + HTQIKKGEVNKLSMIIQEMGAVIKKTDFISSERDGEMVIRFTLDSSMEVSIAEIIEAI + LCNDAVRRVYEEI" + gene 337422..340148 + /locus_tag="Ccel_0294" + CDS 337422..340148 + /locus_tag="Ccel_0294" + /inference="protein motif:TFAM:TIGR01494" + /note="TIGRFAM: ATPase, P-type (transporting), HAD + superfamily, subfamily IC; + PFAM: cation transporting ATPase domain protein; Haloacid + dehalogenase domain protein hydrolase; E1-E2 + ATPase-associated domain protein; + KEGG: cth:Cthe_1917 ATPase, P-type (transporting), HAD + superfamily, subfamily IC" + /codon_start=1 + /transl_table=11 + /product="ATPase, P-type (transporting), HAD superfamily, + subfamily IC" + /protein_id="ACL74681.1" + /db_xref="InterPro:IPR000695" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR004014" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006068" + /db_xref="InterPro:IPR008250" + /db_xref="InterPro:IPR013055" + /translation="MSVTESMLDFTNPDNLLSKGLTDKEARRKLEKHGPNLLSERKRI + SPIKILFEQFTDLMVIILMISTVISGFMGEMTEAITIIAIIVVNAIMGFVQEYRTERT + MEALKSLAAPYAKVIRNEQQASIPAEDIVPGDVIVLETGDRIAADAAILECNSLHIDE + SLLTGESLPVEKHQLKNKNVLMDPFDKKSSVYMGTVVTGGRAKAVVYATGMKTEMGSI + ADMIQNIEDDETPLQKRLGHLGKFIAVGCLIICAIVSFTGIIRGEKLFNMLLSGISLA + VAAVPEGLPAIVTISLALGVQRMLKRNALIRKLPAVETLGCASVICSDKTGTLTENKM + TVRKMYASGYRLDITGNGYNLEGNFLVDNKPTDPVRVDGIRLALEIGALCNNSVISHP + VPEHTTVGKIKSIFSKQESFKISGDPTEIALTIAAAKAGINETYLKRSYKRIDEIPFD + SERKCMSIICKNNCGELLVFTKGAPDVIIDKCSRILSSRGVIKLDELTRRSIIKLNDT + MANDALRVIGVAYRKLETGKYNPGKTNIENELIFVGLMGMIDPPRKEAVEAVRKCRLA + GIKPVMITGDHKLTATAIAKELNIYSMGDQVLTGRELDVMNEAQLEKIADSVSVYARV + SPKHKLMIVRALKKTGHIVAMTGDGVNDAPAVKEADIGVSMGITGTDVTKEASSMILL + DDNFATIIAAVEEGRVIYNNIRKFIRYMLACNLGEVLTMFLGMLLWLPIPLMPIQILW + VNLVTDGLPAIALGLDPPENDIMFRRPRGAHDSIFSHGLLKLIIARGIFIGLSTLGIF + VTVMYFVNNVELARTAAFMTLVLTQLVHVFECKSETRNIFEIDIFNNMPLVLAIICSL + AMILAVVYIPSLQGIFETVPLGLNEWMLIAGFSLMGPVLSSLIGINRKNKYC" + gene 340452..341399 + /locus_tag="Ccel_0295" + CDS 340452..341399 + /locus_tag="Ccel_0295" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_2706 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74682.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MIEIQNLTKSYGQIKAVDDISFTVEKGEVLGFLGPNGAGKSTTM + NIITGFIPSTEGTVKVNGFDIMESPAEVKRRIGYLPELPPLYMDMTVSEYLGFAADLK + NVSKKQKKSQMADIMELVKLTDVRGRLVKNLSKGYKQRVGLAQALMGNPEVLILDEPT + VGLDPKQIIEIRKLIKALGKQHTIILSSHILPEVSAVCERVVIINKGKIAAVDTPENL + SKGMGTVSKLSATIVGPKSSIIGFIQGIYGIKYVEPHVEKDTDVVEYIIESDKEIDVR + RPLFFAMAKAGYPIIELKSLDLTLEDIFLQITTQEKEVI" + gene 341402..342106 + /locus_tag="Ccel_0296" + CDS 341402..342106 + /locus_tag="Ccel_0296" + /inference="protein motif:PFAM:PF01061" + /note="PFAM: ABC-2 type transporter; + KEGG: cth:Cthe_2707 ABC-type transport system involved in + multi-copper enzyme maturation, permease component" + /codon_start=1 + /transl_table=11 + /product="ABC-2 type transporter" + /protein_id="ACL74683.1" + /db_xref="InterPro:IPR013525" + /translation="MFSIFKKEFKSYFTSATAYVIMGMFVLVSSILFYINLVSQTADF + NFNLSYMSIILIIIIPILTMKILADERKSGTEVMLITSPTSLTNIVVGKYLAAFCVFL + IMTAITFIYPIILAVLGEPAMSEIIGGYIGFILLGASFLAFGLFASSLTESQIIAAIV + SVVGLVLMWLLQGIAPALGGVTAKVLNWFSLFSRTEDFYAGILSLSPIVYYLSFSAIF + VFITIRVIEKRRWSKG" + gene 342103..343530 + /locus_tag="Ccel_0297" + CDS 342103..343530 + /locus_tag="Ccel_0297" + /inference="similar to AA sequence:KEGG:Cthe_2708" + /note="KEGG: cth:Cthe_2708 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74684.1" + /translation="MIKVGKFKFLNKRSLKYGTNSIVLIVVVVAIAIVINLLVGMGNF + RFDLTADKLYSLSDQSKDIVKKIKKDVTIYGLFDNATIPGGSEYREITNLINEYKGLG + VKVKYVDPDKDPGTITSLDPQKTMGLTKGDFVVKSGNKVRKLEAQELYGQANQQYGRM + YSAEPLITGAIKFVTSDVTPVAYFVEGHNEIPLTEDLNQVSKILQSNNLEVKSLSLLT + EKKVPDDCQLLVFVSPQKDLTDEEKIKLDAYIKKGGKAVFLFDSLESSEKLANFEDSL + SYFNIGINYDKVKENDSSKHLPNDNYALIASLENNDINKVFSGANYAVFMPDSRSINI + LKNQKDWLTNTPLITTTDKAESNDIVGGKINKGPFNLAVAAEVSGGSKVLVFGNSKFL + SDRALSSQYGTYFQYGTNYFLTTVVNWMQDKTNEETISGKLVTAKALTVTESQTKVLS + IVLIGVIPLAILGCGLFVWSRRRHL" + gene 343534..344952 + /locus_tag="Ccel_0298" + CDS 343534..344952 + /locus_tag="Ccel_0298" + /inference="similar to AA sequence:KEGG:Cthe_2709" + /note="KEGG: cth:Cthe_2709 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74685.1" + /translation="MKLYRNAIILVVVLGLLVGAYFFINNKKSGTTDPASQTTETAKS + IKVNEMDSEKISSIEYSSSQGQFTLKKKGETWVMDPAFELPLDKNTIDNTVSSLADME + ANKVVAENADRLADFGLDKPSMVKVVLSDGSSKEIEVGSKSPTGEDVYVKLKGQPKVY + TVGGYYEDMLKPNRAHYASKQILPVEATTIKKFEYKKDGKIQYSVDIESESEMKLVAP + IKEEADTTKFSQLIQTVVQLSIADIVEENPTDLTKYGLDKPAFEVTYGDGKTTKTILF + GDKADKGESSSSKGGNIFYAKYPDTKVVFTVDVSQLTFLDVKLQDVISPFVYIPNINE + VNKVELSIDGKTIISDIKTVEGKKEEDKFKVDGKDANMKDSSDRSLFKAFYQAMIGIT + FNKYQPDLKPQGTPEITIKYYMKPDNKVVTVDYIPKDNNYYYAVKDGVYTNRIVLKDK + FNEEEGVRDTYKKLKDAIDKAK" + gene 345019..346089 + /locus_tag="Ccel_0299" + CDS 345019..346089 + /locus_tag="Ccel_0299" + /inference="similar to AA sequence:KEGG:Cthe_2710" + /note="KEGG: cth:Cthe_2710 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74686.1" + /translation="MIKGEFSNILKVAFLYMATIIGAGFASGQEIIQFFSIYYKGGFL + GIILAGGLFSIVGYIVLSKVYTERIKSYDEFLFPMMGYFFGKIMEFVVMLFMACVMSV + MTAGLGNILMGLTGLQYRYCVIIGITVCLLAILTNIKGIVVLSSFISPVLIAGIIFVG + CYILVSKDTSVFNISNKLGVITNNWAFSSILYVSYNTILSTVLLTGMLPYLKSKKVSA + WGGLLGGGMLGATALILNSALYFFYPHSITSEIPVLGIIQNNSQMLSKIYSGVLILAM + FISTVTSGYCLAERISKKMKVNYKLVAIIICAIAVPLTSLGFSNLISTLYPVFGYLGL + FLLFVIIFQYIRGIISSRYSRG" + gene 346181..347377 + /locus_tag="Ccel_0300" + CDS 346181..347377 + /locus_tag="Ccel_0300" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2711 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74687.1" + /translation="MNTNPKPESNVIKFKKSGIVSVISFLLLFIAIFATAFIVYLRSS + GYDFSTMSVKDAVAFLKDKENKKSTSSTEITFSQDGSIDCKLYANFIVILSQDSIKWY + EPNGKLLQENALTLARPALRISEKYMVVADISGRDIFFYKGKKQLWTKKLDSQIINVD + INDDGYCTVVTQSKEFKSAVQVIDVNGLEKFTKLCAEDIVVTAKTINNGDDVFINKLT + TGGVKTGTMLEFNNIYDEKPFASIDVADTIIPLVLTQGDNVVAVGQNLILYMDKQGKE + VWRKNADSIFCVVPDIGKYMVVAGKFAGTGEAAGQKVLVLDKKGNEVYSFDQPENIIG + MDIYGNRLLLRTQRSVYLYSLKGKKLGQYSARNELKDAYLVGDNDAILVSGGSIETVK + IDDSTT" + gene 347399..348097 + /locus_tag="Ccel_0301" + CDS 347399..348097 + /locus_tag="Ccel_0301" + /inference="similar to AA sequence:KEGG:Cthe_2712" + /note="KEGG: cth:Cthe_2712 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74688.1" + /translation="MNWADFTVLIIIAVFTFIGLKNGFLYSVFRLLSYILSVVFAVKF + YPVLSGILQKTALFDSVKMSVVKGLMKQQENTISNPGETAAQSVVEGLKLPDFLKDSI + LEHIQNSNILDLTGIINAVGAEIASLVINILSLIIIYTLIRFGLIFAKVVIKTIARVP + VFRQLDKTGGIVLGAVEGIFAVYIICAVLVLFSAFPKFSSSIEDIEKSLFAGRFYENN + FIVSWISPDTFSQN" + gene 348359..350017 + /locus_tag="Ccel_0302" + CDS 348359..350017 + /locus_tag="Ccel_0302" + /inference="protein motif:TFAM:TIGR00110" + /note="TIGRFAM: dihydroxy-acid dehydratase; + PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; + KEGG: cth:Cthe_2713 dihydroxy-acid dehydratase" + /codon_start=1 + /transl_table=11 + /product="dihydroxy-acid dehydratase" + /protein_id="ACL74689.1" + /db_xref="InterPro:IPR000581" + /db_xref="InterPro:IPR004404" + /translation="MRSDIVKKGIEKAPHRSLFKAMGYTDEELERPLIGVANSKSEII + PGHIHLDKLTEAVKAGIRMAGGTPIEFGAIGVCDGIAMGHTGMKYSLATRELIADSCE + AMSKAHSFDGMVFIPNCDKIVPGMLMAAARINIPSIVISGGPMLSLNRDGKQLDLNSL + FEAVGSYKAGTMTKEEVDDIEDHACPGCGSCSGMFTANSMNCLTEVLGMGLTGNGTIP + AVYAERIRLAKYAGMKIMELVEKDIKPSDILTNEAFENALTVDMALGCSTNSVLHLPA + IANELGIEINLDIINEISSRTPNLCKLAPAGKYHIQDLYSAGGVQAVMSELAKKDLLH + LDLVTATGKTIRENIQNAKVKDYEIVKSIDTPYSATGGIAVLRGNIAPDGAVVKKSAV + AEKMLIHTGPARVFDSEDEAITAIYSGQINKGDVVIIRYEGPKGGPGMREMLSPTSAI + AGMGLDSDVALITDGRFSGASRGASIGHVSPEAMEGGPIALVQEGDIVDIDIPAGRIN + IQVTNEEMVKRKESWKAPKPKITTGYLGRYARLVTSASTGAVLK" + gene 350068..351747 + /locus_tag="Ccel_0303" + CDS 350068..351747 + /locus_tag="Ccel_0303" + /inference="protein motif:TFAM:TIGR00118" + /note="TIGRFAM: acetolactate synthase, large subunit, + biosynthetic type; + PFAM: thiamine pyrophosphate protein domain protein + TPP-binding; thiamine pyrophosphate protein central + region; thiamine pyrophosphate protein TPP binding domain + protein; + KEGG: cth:Cthe_2714 acetolactate synthase, large subunit" + /codon_start=1 + /transl_table=11 + /product="acetolactate synthase, large subunit, + biosynthetic type" + /protein_id="ACL74690.1" + /db_xref="InterPro:IPR000399" + /db_xref="InterPro:IPR011766" + /db_xref="InterPro:IPR012000" + /db_xref="InterPro:IPR012001" + /db_xref="InterPro:IPR012846" + /translation="MKLSGADVIIECLKEQGVDTVFGYPGGQAIIIYDALYRARNEIR + HILTSHEQGASHAADGYARATGKVGVCIATSGPGATNLVTGIATAYMDSVPMVAITGQ + VPTALLGKDSFQEVDITGITMPVTKHNFIVKDVTKLAQTIRRAFSIAKEGRPGPVLVD + VCKDVTGAEVEYIPQKPDKDEYRSIKLTEITTDDFELAIQAINEAKRPLLLSGAGVGI + AGAESEISELAENASIPVCTSLMGMGTFPGTHPLYTGMVGMHGTKASNYAVHSCDLLI + VVGSRFSDRIVSNVSTFAPEAKIMHIDVDPAEVGKNVRVDYPLVGDIKRILKTLLKGL + VYKKDTDWIKKILEWKEKYPLKYQKSDTILKPQYIIERIHELTKGDAIITTEVGQHQM + WAAQYFKYSRFRQFISSGGLGTMGYGLGACIGAQLARPDKKIINIAGDGSFRMNCSEL + ATAVEYKLPIIIALFNNKSLGMVRQWQELFFGGRFSQTSIDRGTDFAALAEAFGAKGI + NVNHPEQVDKAISSALSETYRPVLLNFEIDKDDKVFPIVPAGAGLNEVIDC" + gene complement(351792..353420) + /locus_tag="Ccel_0304" + CDS complement(351792..353420) + /locus_tag="Ccel_0304" + /inference="protein motif:PFAM:PF00270" + /note="PFAM: helicase domain protein; DEAD/DEAH box + helicase domain protein; + SMART: DEAD-like helicases; + KEGG: cbt:CLH_1287 ATP-dependent RNA helicase DbpA" + /codon_start=1 + /transl_table=11 + /product="DEAD/DEAH box helicase domain protein" + /protein_id="ACL74691.1" + /db_xref="InterPro:IPR000629" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014014" + /db_xref="InterPro:IPR014021" + /translation="MNNTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLI + VMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKT + TAIYGQHNINLETQILNKGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDM + GFLDQVVRIVKTLPKERITLLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQ + VYYRVNYNEKNTQLNRLLIVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIP + QSKRLNTIQQFKQGKFHILVATDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGR + AGHEGRAFSLVTGDDIISLYEIEEHIGTLILEEELPDEEAFTKAREEAAQWIKANSLK + EKAPRSASADSSVKQKRTGQNSKSNRIPNGRPEYSKRPDGQSRHTGKSASSEQRSERI + KSVNTVHSDKQPGRTPVTPIRTAKPPIRSVSRHVSPNATGLNSPDMRRNSAAAPSVSK + VQTRNTSKTESAANNTKANKQPLLKRILHKIFGN" + gene 353647..353796 + /locus_tag="Ccel_0305" + CDS 353647..353796 + /locus_tag="Ccel_0305" + /inference="protein motif:PFAM:PF00471" + /note="PFAM: ribosomal protein L33; + KEGG: cac:CAC3151 50S ribosomal protein L33" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L33" + /protein_id="ACL74692.1" + /db_xref="InterPro:IPR001705" + /translation="MRVKITLACTDCKQRNYSNIKNKKNDPDRLELKKYCKFCHKHTV + HKETK" + gene 353898..354128 + /locus_tag="Ccel_0306" + CDS 353898..354128 + /locus_tag="Ccel_0306" + /inference="protein motif:TFAM:TIGR00964" + /note="TIGRFAM: preprotein translocase, SecE subunit; + PFAM: protein secE/sec61-gamma protein; + KEGG: cth:Cthe_2718 preprotein translocase, SecE subunit" + /codon_start=1 + /transl_table=11 + /product="preprotein translocase, SecE subunit" + /protein_id="ACL74693.1" + /db_xref="InterPro:IPR001901" + /db_xref="InterPro:IPR005807" + /translation="MAENEVKKVSRLKKSGQGIVRLYKEIRAELKKVIWPNRTQLINN + TVTVLIFCLIVGTIIWVADFGFTKLAEVVFTR" + gene 354189..354707 + /locus_tag="Ccel_0307" + CDS 354189..354707 + /locus_tag="Ccel_0307" + /inference="protein motif:TFAM:TIGR00922" + /note="TIGRFAM: transcription termination/antitermination + factor NusG; + PFAM: KOW domain protein; NGN domain protein; + KEGG: cth:Cthe_2719 transcription antitermination protein + NusG" + /codon_start=1 + /transl_table=11 + /product="NusG antitermination factor" + /protein_id="ACL74694.1" + /db_xref="InterPro:IPR001062" + /db_xref="InterPro:IPR005824" + /db_xref="InterPro:IPR006645" + /db_xref="InterPro:IPR015869" + /translation="MSEETKWYVVHTYSGYENKVKANLEKIVENRSMQDYIVDIVVPM + EEQIEIKDGKKKATLKKVFPGYVLVKMIMSDESWYIVRNTRGVTGFVGPGSKPVPLSD + EEVKAMGVEEFAPEVDYEVNDNVRVTSGPLENFIGIVEEINLEKKKVRVSVSMFGRET + PVELELTQIQKI" + gene 354795..355220 + /locus_tag="Ccel_0308" + CDS 354795..355220 + /locus_tag="Ccel_0308" + /inference="protein motif:PFAM:PF00298" + /note="PFAM: ribosomal protein L11; + KEGG: cth:Cthe_2720 50S ribosomal protein L11P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L11" + /protein_id="ACL74695.1" + /db_xref="InterPro:IPR000911" + /db_xref="InterPro:IPR006519" + /translation="MAKKIAGYVKLQIPAGKATPAPPVGPALGQHGVNIMGFCKEFNE + RTAKDAGLVIPVVITVYADRSFSFITKTPPAAVLLKKACKIESGSGKPNKDKVAKITM + DEVRKIAEQKMPDLNAASVDAATKMIAGTARSMGIVVVE" + gene 355334..356026 + /locus_tag="Ccel_0309" + CDS 355334..356026 + /locus_tag="Ccel_0309" + /inference="protein motif:PFAM:PF00687" + /note="PFAM: ribosomal protein L1; + KEGG: cth:Cthe_2721 50S ribosomal protein L1P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L1" + /protein_id="ACL74696.1" + /db_xref="InterPro:IPR002143" + /db_xref="InterPro:IPR005878" + /translation="MFRGKKYQESSKLIDRLKLYEPSEALELAQKTAKAKFDETIEVH + IKLGVDSRHADQQVRGAVVLPHGTGKKVRVLVFAKGDKAKEAEQAGADFVGGEELISK + IQNENWFDYDVVVATPDMMGVVGRLGKVLGPKGLMPNPKAGTVSMDVAKAIADIKAGK + IEYRLDKTNIIHCPIGKASFGNEKLMDNFRTLLGAIIKAKPAAAKGQYLKSVVVTSTM + GPGIKINPLRVE" + gene 356276..356806 + /locus_tag="Ccel_0310" + CDS 356276..356806 + /locus_tag="Ccel_0310" + /inference="protein motif:PFAM:PF00466" + /note="PFAM: ribosomal protein L10; + KEGG: cth:Cthe_2722 50S ribosomal protein L10P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L10" + /protein_id="ACL74697.1" + /db_xref="InterPro:IPR001790" + /db_xref="InterPro:IPR002363" + /translation="MPSNRILEQKKQVVSDLTEKIKSAQSIVLADYRGLTVEQDTELR + TALRKAGVEYKVVKNKLTSLAMKESGLELDEFLTGPTAMAISSADAVAPAKVLSEFSK + KFDKLELKVGVVEGKVIDLDGIKALAELPSREVLIAKVLGGFNAPISGFVNVLNGNMR + GLVVALNAISEQKANA" + gene 356873..357256 + /locus_tag="Ccel_0311" + CDS 356873..357256 + /locus_tag="Ccel_0311" + /inference="protein motif:TFAM:TIGR00855" + /note="TIGRFAM: ribosomal protein L7/L12; + PFAM: Ribosomal protein L7/L12; + KEGG: cth:Cthe_2723 50S ribosomal protein L12P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L7/L12" + /protein_id="ACL74698.1" + /db_xref="InterPro:IPR000206" + /db_xref="InterPro:IPR013823" + /translation="MASEKVVKLIEDVKNLTVLELSELVKALEEEFGVSAAAPVAVAA + APAAGGAAPAAEEKTEFDVILKEVGADKIKVIKVVREATGLGLKEAKDLVDGAPKTIK + ENVSKDEAASIEAKFKEVGATVEIK" + gene 357744..361484 + /locus_tag="Ccel_0312" + CDS 357744..361484 + /locus_tag="Ccel_0312" + /inference="protein motif:TFAM:TIGR02013" + /note="TIGRFAM: DNA-directed RNA polymerase, beta subunit; + PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 + domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase + beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed + RNA polymerase beta subunit; + KEGG: cth:Cthe_2724 DNA-directed RNA polymerase subunit + beta" + /codon_start=1 + /transl_table=11 + /product="DNA-directed RNA polymerase, beta subunit" + /protein_id="ACL74699.1" + /db_xref="InterPro:IPR002160" + /db_xref="InterPro:IPR007120" + /db_xref="InterPro:IPR007121" + /db_xref="InterPro:IPR007641" + /db_xref="InterPro:IPR007642" + /db_xref="InterPro:IPR007644" + /db_xref="InterPro:IPR007645" + /db_xref="InterPro:IPR010243" + /translation="MVQPVKLGRNTRMSYSKIREVLEMPNLIEVQKNSYQWFLDEGLR + EVFRDISPITDYTGNLILDFVDYSLDDTPKYSVEECKERDTTYSAPLKAKVRLINKES + GEVKEQEIFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGIYYSMKFDRVGKKLYSNT + VIPNRGAWLEYETDSNDILSVRIDRTRKLPLTVLLRALGYGTDFAITQLLGEDERILA + TIQKDNAKTTEEGLLEIYKRLRPGEPPTVDSARSLLNSLFFDPKRYDLAKFGRFKFNK + KLSVANLITGQVAAENIVSAETGEILVTEGELIEREKAVEVQNSGVNVVHLSVEGKSI + KVVGNNTVDIRAFIDFDVSDIGITENVQYAVLKEILESTSGEVQIKKALGERINDLIP + KHITVEDIISSINYIINLDYGIGSIDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV + RERMTIQDIDIVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSAL + GPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIEAPF + RKVDKKNRKVTNEIVYLTADVEDPFVVAQATEPLDEEGKFISNKVVARIRHEILEVES + NKIDFMDVSPKQMVSVATAMIPFLENDDANRALMGSNMQRQAVPLIKADSPIIGTGIE + YKAARDSGVCVIARTSGVVDKVSASEIVIKTKSGQKDSYKLLKYMRSNQGTCLNQRPI + VRKGEVVEKGDIIADGPSTDNGEIALGRNVLIGFMTWEGYNYEDAILINEKLVKEDVY + TSIHIEEYEAESRDTKLGPEEITRDIPNVGEEALKDLDDRGIIRIGAEVRSGDILVGK + VTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIIVDVKVFTRENGDELPP + GVNQLVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPLEIVLNPLG + VPSRMNIGQVLEVHLGYAAKALGWKIATPVFDGATEEDIRETLIKAGKDPDGKTVLYD + GRTGEPFDNRVTVGYMYYLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGE + MEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGIPESFKVLIKEL + QSLALDVKVYSEEQEEIAIKEYVEDDLEDLNVNIEGREDEVILTNDFDNELREDVLEE + ELDIDDLDIGSISTGDNLEEELTEELFAEDDLSDDFEDDEDL" + gene 361501..365010 + /locus_tag="Ccel_0313" + CDS 361501..365010 + /locus_tag="Ccel_0313" + /inference="protein motif:TFAM:TIGR02386" + /note="KEGG: cth:Cthe_2725 DNA-directed RNA polymerase + subunit beta'; + TIGRFAM: DNA-directed RNA polymerase, beta' subunit; + PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 + domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase + Rpb1 domain 5; RNA polymerase Rpb1 domain 4; + SMART: RNA polymerase I subunit A domain protein" + /codon_start=1 + /transl_table=11 + /product="DNA-directed RNA polymerase, beta' subunit" + /protein_id="ACL74700.1" + /db_xref="InterPro:IPR000722" + /db_xref="InterPro:IPR006592" + /db_xref="InterPro:IPR007066" + /db_xref="InterPro:IPR007080" + /db_xref="InterPro:IPR007081" + /db_xref="InterPro:IPR007083" + /db_xref="InterPro:IPR012754" + /translation="MFELNNFDSIRIGLASPEKVREWSKGEVKKPETINYRTLKPERD + GLFCERIFGPQKDWECHCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVS + HIWYFKGIPSRMGLILDMSPRSLEKILYFASYVVIDPGQTPLSKKQVLTEKEYRDSVD + KFGLNFRAAMGAEAVKELLVEIDLESLSKELRTELTESTGQKRIRAVKRLEVVEAFRL + SGNRPEWMILDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA + PDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK + RVDYSGRSVIVVGPDLKIFQCGLPKEMALELFKPFVMKKLVNDGLAHNIKSAKRMVER + VRNEVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPVLVEGRALKLHPLVCSAYNADF + DGDQMAVHVPLSAEAQSEARFLMLSANNLLAPKDGKPITVPTQDMVLGSYYLTIEKSD + EPGDGRVFCDIDEVLMAYEEGALGLHAQIKVRVEKEIDGVKKRKIISCTPGRLIFNEA + IPQDLGFVDRSDESNLFDLEINFLVGKKELGKIIDKCIRVHGTTKTAVILDKIKALGF + KYSTRGAITISVSDMVIPEIKKQYLQETENTIDNIVKQYKRGLISDEERYNSVISAWT + ETGESITKALIDNLDRFNPVYMMSQSGARGNINQIKQLAGMRGLMADTSGKTIEIPIK + SNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRELDCGTDK + GIEVHDIKDGGETIEPLSERLVGRYLTDDLYDSETNELLASKDEAMDEKKASLVTKSL + AKSGIKKVKIRSVLTCHSEVGVCAKCYGANLATGDAVNIGEAVGIIAAQSIGEPGTQL + TMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIISEIAGGVKLSDSKKKREVIIT + SEDGESKSYQIPYGSRIKVYDGDVVEAGDELTEGSVNPHDILKIKGIKGVQSYLLQEV + QRVYRMQGVDINDKHIEVIVRQMMRKVKIEDAGDTSMLPGGLVDIFEFEKENQKAVEA + GLAPATSERTLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKIDPLVGLKENVII + GKLIPAGTGMSRYKDISISSVVE" + gene 365219..365461 + /locus_tag="Ccel_0314" + CDS 365219..365461 + /locus_tag="Ccel_0314" + /inference="protein motif:PFAM:PF01248" + /note="PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; + KEGG: cth:Cthe_2726 50S ribosomal protein L7AE" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L7Ae/L30e/S12e/Gadd45" + /protein_id="ACL74701.1" + /db_xref="InterPro:IPR000948" + /db_xref="InterPro:IPR004038" + /translation="MLDDLKHCKKAVGVKQSTKAVENGVASSVIIARDCEQRVVRGII + ELCENKSVPITYVDSMKQLGKACGIDVDAAVACIFK" + gene 365540..365968 + /locus_tag="Ccel_0315" + CDS 365540..365968 + /locus_tag="Ccel_0315" + /inference="protein motif:TFAM:TIGR00981" + /note="TIGRFAM: ribosomal protein S12; + PFAM: ribosomal protein S12/S23; + KEGG: cth:Cthe_2727 30S ribosomal protein S12" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S12" + /protein_id="ACL74702.1" + /db_xref="InterPro:IPR005679" + /db_xref="InterPro:IPR006032" + /translation="MPTFNQLVRKGRKVIEKKSNSPALQKGFNSKKKKPTDVNSPQKR + GVCTVVKTSTPKKPNSALRKVARVRLTNGIEVSAYIPGIGHNLQEHSVVLIRGGRVKD + LPGVRYHIVRGTLDTAGVAKRMQARSKYGAKRPKAGAASK" + gene 366193..366663 + /locus_tag="Ccel_0316" + CDS 366193..366663 + /locus_tag="Ccel_0316" + /inference="protein motif:PFAM:PF00177" + /note="PFAM: ribosomal protein S7; + KEGG: cth:Cthe_2728 30S ribosomal protein S7" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S7" + /protein_id="ACL74703.1" + /db_xref="InterPro:IPR000235" + /db_xref="InterPro:IPR005717" + /translation="MPRKGHISKRDVLPDPIYGSKTVTKLINNVMYDGKKGIAQQICY + DAFDIIKEKTGRDPLEVFEEAMANIMPVLEVKARRVGGATYQVPMEVRPDRRQALGLR + WLVDYSRKRGERTMRERLSGEILDAINNMGGAYKKKEDTHKMAEANRAFAHYRW" + gene 366719..368800 + /locus_tag="Ccel_0317" + CDS 366719..368800 + /locus_tag="Ccel_0317" + /inference="protein motif:TFAM:TIGR00484" + /note="TIGRFAM: translation elongation factor G; small + GTP-binding protein; + PFAM: elongation factor G domain protein; protein + synthesis factor GTP-binding; elongation factor Tu domain + 2 protein; elongation factor G domain IV; + KEGG: cth:Cthe_2729 translation elongation factor 2 + (EF-2/EF-G)" + /codon_start=1 + /transl_table=11 + /product="translation elongation factor G" + /protein_id="ACL74704.1" + /db_xref="InterPro:IPR000640" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR004540" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR005517" + /translation="MPRQFDLEHTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGETH + EGSATMDWMEQEQERGITITSAATTAQWKGNRINIIDTPGHVDFTVEVERSLRVLDGS + VTVFCAKGGVEPQSETVWRQADKYGVPRMAYVNKMDIMGADFYNVIAMMKDRLQCNAV + PIQLPIGSEDCFVGMVDLVTMTSHIFKDDLGQVIEDQPIPDDMIEISNKYREQLLEAV + AEQDEELMMKYLEGEEFTLEEIKAGIRKATIAVKMIPVTCGSSYKNKGVQQMLDAVID + FMPSPTDIPAIKGISVDGDTEIERPADDNGPFAALAFKIMTDPYVGKLCFFRVYSGTL + NSGSYVLNSTKNKRERIGRILQMHANHREEIQVVHSGDIAAAVGLKDTTTGDTLCEEN + NPVILESMEFPEPVIEVAIEPKTKAGQEKMGVALQKLAEEDPTFRVHTDAETGQTIIG + GMGELHLDIIVDRMLREFKVEANVGNPQVSYKETIRKAVKSEMKYARQSGGKGQYGHC + VIELEPREPGAGYEFVNKITGGAIPKEYIAPIDAGIQEAMNTGVLAGYNVVDIKVTLI + DGSYHEVDSSEMAFKIAGSMAFKDGCRKANPVLLEPIMKVDVSVPEEYMGDVMGGLNA + RRGRIEGMEARGGAQNIRAVVPLSEMFGYATALRSSTQGRGTFSMQTSHFEEVPKSIQ + EKVISSRTTGV" + gene 368924..370126 + /locus_tag="Ccel_0318" + CDS 368924..370126 + /locus_tag="Ccel_0318" + /inference="protein motif:TFAM:TIGR00485" + /note="TIGRFAM: translation elongation factor Tu; small + GTP-binding protein; + PFAM: protein synthesis factor GTP-binding; elongation + factor Tu domain protein; elongation factor Tu domain 2 + protein; + KEGG: cth:Cthe_2730 elongation factor Tu" + /codon_start=1 + /transl_table=11 + /product="translation elongation factor Tu" + /protein_id="ACL74705.1" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004160" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR004541" + /db_xref="InterPro:IPR005225" + /translation="MAKAKFERNKPHVNIGTIGHVDHGKTSLTAAITKVLGFLGSAEY + KAYDQIDAAPEERERGITINTSHVEYQTETRHYAHVDCPGHADYVKNMITGAAQMDGA + ILVVSAADGPMPQTREHILLSHQVGVPYIIVFLNKCDMVDDDELIELVEMEVRELLSS + YEFPGDDTPIIRGSALVALESTSTDINSPEYAPIVALMKEVDNYIPTPERATDKAFIM + PVEDVFSITGRGTVATGRVEKGIVKVGDEVEIVGLMEAPKKTVVTGVEMFRKLLDQAE + AGDNIGALLRGVQRTDIERGQVLAKPGSIKPHTYFEGQVYVLTSAEGGRHKPFFNGYR + PQFYFRTTDVTGVIEIPEGTEMVMPGDHITMKIKLITPIAMEEGLKFAIREGGRTVGA + GNVSKIIE" + gene 370295..371209 + /locus_tag="Ccel_0319" + CDS 370295..371209 + /locus_tag="Ccel_0319" + /inference="similar to AA sequence:KEGG:CBO0408" + /note="KEGG: cbo:CBO0408 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74706.1" + /db_xref="InterPro:IPR003527" + /translation="MLSREEYIRLSLELNLFFGRIAKEHSIFIESSFTSKNSKLAQEA + DDFKIQFERLLAETISLANGVVSPDIVISRELVTPYTLNAERVSQFYTGIPINISLTQ + AESSLQGNADMMPVPMLEQRVFMLNQKAINLTTALAQFKSRILNDVLACKLFTTNYPL + LLDHILREAKFYLRTLSRLQNREDIATAKDLIEQEVFWNRIMAEHSKFIRGLLDPTEN + DLINTANKYGREFDELTREAIKATEQTNLLPEVTIDSLNATKGLRDFKATGTKGLIEC + KIKAIAYPLLGDHVLREANHYIRILQKS" + gene 371303..371848 + /locus_tag="Ccel_0320" + CDS 371303..371848 + /locus_tag="Ccel_0320" + /inference="similar to AA sequence:KEGG:DICTH_0546" + /note="KEGG: dth:DICTH_0546 YdaE" + /codon_start=1 + /transl_table=11 + /product="YdaE" + /protein_id="ACL74707.1" + /translation="MINKEEHLRALEDTLAYFNKASIVLTEYEKKQIEIADFGLNDLR + HTGLQLITFVNTDRVCAKEMVLFPRQTCPEHKHPNRNGIPGKEETFRCRSGRVYLYVE + GEKSQEIHCKVPPGSEKYYTVWHEIILNPGEQYTLYPDTLHWFQAGEEGAVISEFSTN + SDDLSDIFTDDRIKRIPEIDR" + gene 372068..373258 + /locus_tag="Ccel_0321" + CDS 372068..373258 + /locus_tag="Ccel_0321" + /inference="protein motif:PFAM:PF00753" + /note="PFAM: beta-lactamase domain protein; + flavodoxin/nitric oxide synthase; + KEGG: drm:Dred_2942 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain protein" + /protein_id="ACL74708.1" + /db_xref="InterPro:IPR001279" + /db_xref="InterPro:IPR008254" + /translation="MIEIKKNIYWCGIRDWGLSVFHGHELSTHRGTSYNSYIIRDKKT + VLIDTVWDPYKEQFVEDLDKSIGLSNIDAIVINHMEPDHGGSLGLLMSKIPNTPIYCT + KNGSEIIKKYFEKDWNFNIVKTGDVLDLGEHKLHFVDMQMIHWPDSMLVYVEGAKLVI + SNDAFGQHYCGTALFNDQVDTCELYQEAIKYYANILTPFRPLIKKKIEQIMAMNLDID + MIAPSHGVIWRDNPSQIIKKYVEWADPNFNEGYAAIIYDTMYHTTRAMAEAIGRGFEE + EGVSYRIINAATRDKSDLNVEIFKANAVLIGSCTVNNTVTRPIAALLEEIKSLKIKSK + LAAGFGAYGWSGEAHKKISKELGDAGLTIGAEPLGFRYKMLEQEVEQCVEMGRNIARQ + LKAK" + gene 373484..374176 + /locus_tag="Ccel_0322" + CDS 373484..374176 + /locus_tag="Ccel_0322" + /inference="similar to AA sequence:KEGG:Cthe_1768" + /note="KEGG: cth:Cthe_1768 NifU-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="NifU-like domain-containing protein" + /protein_id="ACL74709.1" + /translation="MNYSHEVENMCVVKKGPNHGPAPIPEEGRWVKAKEVKDISGLSH + GIGWCAPQQGTCKLTLNVKEGIIEESLVETIGCSGMTHSAAMAAEILQGKTILEALNT + DLVCDAINVAMREIFKQLVYGRTQSAFSEDGLVIGAGLEDLGKGLRSQVGTMYATKAK + GARYLEMAEGYILSIGLDADNEIIGYKFVHLGKMMDMIKKGVDPKEAYEKNVGQYGRY + DEAVKVIDPRHE" + gene 374198..375196 + /locus_tag="Ccel_0323" + CDS 374198..375196 + /locus_tag="Ccel_0323" + /inference="similar to AA sequence:KEGG:Cthe_1767" + /note="KEGG: cth:Cthe_1767 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74710.1" + /translation="MVRFEGYERRIAQIEKCLAEYGFKSLEEVKDLCTSKGIDVDSIV + RGVQPIAFENAVWAYTLGCGIALKKGAKDAAEAAEAIGLGLQAFCIPGSVADSRQVGI + GHGNLAAMLLKEETKCFCFLAGHESFAAAEGAIGIAKTANKVRKEPLQVILNGLGKDA + AYIISRINGFTYVETDYDFATNTLNVVKTKAYSNGDKSKVRVYGANDVLEGVAIMMKE + NVDVSITGNSTNPTRFQHLVAGTYKKWSNENNKKYFSVASGGGTGRTLHPDNMAAGPA + SYGLTDSMGRMHGDAQFAGSSSVPAHVEMMGLIGMGNNPMVGATVAVAVAIEESTK" + gene 375532..375990 + /locus_tag="Ccel_0324" + CDS 375532..375990 + /locus_tag="Ccel_0324" + /inference="protein motif:PFAM:PF05848" + /note="PFAM: Firmicute transcriptional repressor of class + III stress genes; + KEGG: cth:Cthe_1792 firmicute transcriptional repressor of + class III stress genes" + /codon_start=1 + /transl_table=11 + /product="transcriptional repressor, CtsR" + /protein_id="ACL74711.1" + /db_xref="InterPro:IPR008463" + /translation="MASLSDLIEAFIKQMIADTNGSIELQRNELANQFNCVPSQINYV + ISTRFTADRGYYVESRRGGGGHVKIKRVNISIPGNYLMHIVSSMRSSISQQSAEVFIN + NFVDYEVISEREGFLMKAAVSDKVLGGLSMPDRDIIRASLLKNMIMSLLV" + gene 376033..376521 + /locus_tag="Ccel_0325" + CDS 376033..376521 + /locus_tag="Ccel_0325" + /inference="protein motif:PFAM:PF02151" + /note="PFAM: UvrB/UvrC protein; + KEGG: cth:Cthe_1791 UvrB/UvrC protein" + /codon_start=1 + /transl_table=11 + /product="UvrB/UvrC protein" + /protein_id="ACL74712.1" + /db_xref="InterPro:IPR001943" + /translation="MLCQNCQQRIASVHLTQIKNNTKLDIYLCEECAQEMSQQDFISP + FGFNDLISGLFGAQLKHEPYVKLKCKNCGMEYNEFLKTSRLGCSQCYKVFADKLDPIV + KRLHGNGEHHGKVPSRVSSNVSITNEMDKLKQLLNEAIKNEKYEEAAKIRDRIKSLEV + EE" + gene 376518..377540 + /locus_tag="Ccel_0326" + CDS 376518..377540 + /locus_tag="Ccel_0326" + /inference="protein motif:PFAM:PF00217" + /note="PFAM: ATP:guanido phosphotransferase; + KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase" + /codon_start=1 + /transl_table=11 + /product="ATP:guanido phosphotransferase" + /protein_id="ACL74713.1" + /db_xref="InterPro:IPR000749" + /translation="MSKKPSEKGPEFDIAVSSRVRLARNFADIPFSARINPKQQAELI + KRMQEIMEEFTTYGKLMFADMNTLHPVDRLSLMERHLISPELADSKGSSGAFINENEN + VSIMVNEEDHLRVQSIFPGIQLEKGYKVCDEIDSLIAEKADYAFDDKYGYLTSCPTNL + GTGMRASVMLHLPALVMTGYMKSILESCNKVGVAVRGIYGENSEAVGDMFQVSNQITL + GRKEEETISSIDGICKQIIDREKALRLQLYKKNLYKFEDKIFRSYGILKNARVLSSQE + CFKLLSDVRLGVSMGIIKDIDIVTLNETIVLSQPATLQKISGNQLEQDQRDIKRAELI + RMKITK" + gene 377562..379994 + /locus_tag="Ccel_0327" + CDS 377562..379994 + /locus_tag="Ccel_0327" + /inference="protein motif:PFAM:PF07724" + /note="PFAM: UvrB/UvrC protein; AAA ATPase central domain + protein; Clp domain protein; Torsin; ATPase associated + with various cellular activities AAA_5; ATPase AAA-2 + domain protein; + SMART: AAA ATPase; + KEGG: cth:Cthe_1789 ATPase AAA-2" + /codon_start=1 + /transl_table=11 + /product="ATPase AAA-2 domain protein" + /protein_id="ACL74714.1" + /db_xref="InterPro:IPR001270" + /db_xref="InterPro:IPR001943" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR004176" + /db_xref="InterPro:IPR010448" + /db_xref="InterPro:IPR011704" + /db_xref="InterPro:IPR013093" + /translation="MYQRFTEKAERAIGFSQQAAVDLGHNYVGTEHILLGLVKEGTGV + AARVLQGQGITEEKILKEIEELIGKGDAEGTQPVGFTPRTKRVLELAFKEARRMGQGY + IGTEHLLLGIMKEGESVAVRILMDLGVDPQKLLNELVKILTEETPGSNGSAKGNSSNS + NTPTLNQFGRDLTDMARDGKIDPVIGRDKEIERVIQILSRRTKNNPCLIGEPGVGKTA + IAEGLAQKIVEGNIPEILSNKRVVTLDLSSMVAGAKYRGEFEDRLKKAMEEIRKAANV + ILFIDELHTIVGAGAAEGAIDASNILKPSLARGEIQVIGATTLNEYRKHIEKDAALER + RFQPITVGEPSKEEAVEILKGVRDKYEAHHRVKITDDALEAAVKLGDRYITDRFLPDK + AIDLIDEAASRIRLKTFTAPPDLKEMEERVEKLGKEKEDAIRCQEFEKAARIRDDEQK + LKSELEKIRDQWHQKNQTKTDTVTEDDIADIVASWTGIPVRRLAEEESERLLKMEDTL + HKRVIGQDEAVKSISKAIRRGRVGLKDPKRPVGSFIFMGPTGVGKTELCKALAEAMFG + DEKSMIRVDMSEFMEKHSVSKLVGSPPGYVGYDEGGQLTERVRRKPYSVLLFDEIEKA + HPDIFNILLQILEDGRLTDSQGRVVDFRNTIIIMTSNVGARTITEPKRLGFSASNDES + AKNYEDMKSNVMSELKKMFRPEFLNRIDDIIVFHPLSKENIKEIVRLMLDVLVNRLKA + NEIIMEVSEEAMGYLAQKGFDPVFGARPLRRAIQSMVEDKLAEDMLEGKVKAGDSIRI + DLDGENIVVIKK" + gene 380199..381605 + /locus_tag="Ccel_0328" + CDS 380199..381605 + /locus_tag="Ccel_0328" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cpy:Cphy_2677 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74715.1" + /db_xref="InterPro:IPR000385" + /db_xref="InterPro:IPR007197" + /translation="MIIYKLIKTPLQYYVYDRNKNKILNISKEEYQELDRLNKKEITE + KEAVCLKKFQKYGYLKDSILEEIVHPETKYIKHHLDHRVQFLILQVTQSCNLRCNYCT + YSGNYTNRVHSGKSMSWELAKKSIDYLYDHSNEIEKVRISFYGGEPLLRFDLIKRCVQ + YVKEAYPDRITDYGITTNGTLLSGEIAEFLIDNQFSITISLDGSKKDHDANRKFANGE + GSFNTIINNIKDISKHNKGFIKNIRFNTVLNPKSDYGTVRNYFNSEDVVCDAGVGLSL + MEEINYKGDISFSNEFINIRRYDYFLLLMTMVKKLKKEAIPKFMSEIKAGIDIDYSTM + EDVNNLNKTWHHGGPCIAGAMRMFVNTDGVIYPCEKAVETSEAMKIGEMDEGTDSQKV + SEIMNIGKISEKDCKSCWAINWCSMCALYAEKDGKFDVATKRKNCAKSFIEVQEKLLN + ICALKEFGYKFGKEEMYV" + gene 381598..382680 + /locus_tag="Ccel_0329" + CDS 381598..382680 + /locus_tag="Ccel_0329" + /inference="similar to AA sequence:KEGG:Cphy_2676" + /note="KEGG: cpy:Cphy_2676 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74716.1" + /translation="MYKLLVYPFSMEDYCITKYRNMLQGYELTSLVCLEGACETGRDA + GEFNEVESGLIITDDYSAEIDKCNVVLLLDKNFNEFEETYIKRINTAVSKNKIVLTNK + KIYDFCVKEFSDNKNIRILDNIQEYGLNYFTNDRKITQPDIPVITVMSMGESCNKFEA + QLDLRKKFQDKGYKVLQFGTKDYCDLYGFRNIPSFLMSKDISIDRKIYLFNYYINKEV + LKDDYDVIIIGVAGGILPVNRYVTNYFGEIPLIVSSALNIDINVLCLYHNNEIKKENL + YECREFNKGRLGCFTDYYYMSDRQFRITYEHDIVYFMLDRKNCINSMPVINDESLKFC + HVLDTDVKENMLNSLVEELEGNVALV" + gene 382694..382969 + /locus_tag="Ccel_0330" + CDS 382694..382969 + /locus_tag="Ccel_0330" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74717.1" + /translation="MNKCEVMNEIKKTVLRITGIIIEDENDNIIGCHHIYPIVYAIYI + VEELEKVFGKEVSDIFTENDYTIWELTNLADAIMNKCRSSVETLQVI" + gene 382969..383067 + /locus_tag="Ccel_0331" + CDS 382969..383067 + /locus_tag="Ccel_0331" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74718.1" + /translation="MIAGGISFILLNDYIKTIKEVFLWRNYPKEMS" + gene 383037..383228 + /locus_tag="Ccel_0332" + CDS 383037..383228 + /locus_tag="Ccel_0332" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74719.1" + /translation="MEKLSKRNELVPNTVMAFSCPCASVCSCASRCGGNGTADSAISS + SLRSSEYIVASSAISSTFG" + gene complement(383282..384544) + /locus_tag="Ccel_0333" + CDS complement(383282..384544) + /locus_tag="Ccel_0333" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; + KEGG: cth:Cthe_1788 glycosyl transferase family protein" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL74720.1" + /db_xref="InterPro:IPR001173" + /translation="MQNIFFNIIYYISEFIQILIFIAGCYFFGISIFGWVKRRQKSPQ + NIIPTKRFALVVAAHNEELVIGHIVDSLFKLNYPKNLYDVFVIADNCTDNTAGIARRF + GAKVHIREDASKKGKGHALEWMFHRIFHMDTSYDAIAVFDADNLVSQNFLLEMNKQMC + KGFKVVQGYIDSKNPYDSWITCSYSIAFWLSNRIYQLPRYYLKLSCGLCGTGFCIDTS + ILKTLKWGATCLTEDLEYTMKMALNGVKIGWAHEAVVYDEKPITLKQSWHQRKRWMQG + HAECAQKYLGALFKKALFKGDLTSLDCALYLFQPIRFIFVGLMTVMMWVQTVYPQFPL + YSVQYVFPVQVWYLMGLFEMFYGPLVILAEKKFSLKVILGFIIYPYYCLTWIPITIQG + ILEKNNKEWNHTVHTRQISINELENSNG" + gene complement(384992..386275) + /locus_tag="Ccel_0334" + /pseudo + gene 386508..388442 + /locus_tag="Ccel_0335" + CDS 386508..388442 + /locus_tag="Ccel_0335" + /inference="protein motif:PFAM:PF00723" + /note="PFAM: glycoside hydrolase 15-related; + KEGG: cth:Cthe_1787 glycoside hydrolase 15-related" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase 15-related" + /protein_id="ACL74721.1" + /db_xref="InterPro:IPR011613" + /translation="MQKSYYNNAITGNSSMLACFSERAELLRLFWPDIDYIQNLDKMF + LGLFEKNKTGSTVWLNDIRCEHHQEYLPDSNIIKNMVTNFFDGYKVVLYDFVHPEMDV + LVRRFEIENLRGESRELGLMSFSAATSSDSEVACSLFDFMNEALVHYKPDSYIAVTSD + IPVYQFQIGNNANDAAVNTYLYGKDDIGMMKDAAISWDLGVFQPHAVKTTNVYLCAAD + TLKSCKALVRRVKTVGGLTAFRETGRYWKDYLEKTTKLKSGNTLLDDLYKRSLLVFRL + MYSKKSGGLMAAPEVDEYFTKCGKYAYCWGRDAAFITGALDIGGLCESVDHFYKWAVN + VQDEDGSWQQRYHMNGNLGPCWGLQVDETGTIIWGMLNHYNYTKNTDFLKSVWDSVKA + AADFLVRFIDSETGLPRPSFDLWEERYGEHAYSSASVCAGLKSASEMARILGKPSQEY + IQWETTADSIKKAIVKYFWKEDYRRFIRSIRVKLNGFGQEPSSDTMLIKVNPKGYVRD + VTKEDWIVDVSLVGLGIPFEIFELNDPMLRDTVSLIEQVLTAQGVGGIKRYENDTYIG + GNPWILTTLWIALYHAKSGNYKKAKEYLIWAASGKTELGLLPEQINRDTGKPEWIIPL + TWSHAMYVHVYSELINAGVL" + gene 388460..389860 + /locus_tag="Ccel_0336" + CDS 388460..389860 + /locus_tag="Ccel_0336" + /inference="protein motif:SMART:SM00382" + /note="SMART: AAA ATPase; + KEGG: cbe:Cbei_0126 DNA repair protein RadA" + /codon_start=1 + /transl_table=11 + /product="AAA ATPase" + /protein_id="ACL74722.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004504" + /translation="MQKVGLINIKNKTVFKCSNCGYVSPKWVGRCPECDNWNTFEERE + IQNQKNSRSASARITKPLVRLTQVKAGNSDRIVTGINEFNRVMGGGIVKDSITIITAK + PGAGKSTLLLQVAGDVASKGLKVLYASGEESESQIKSRADRIFNKIEDGVWVYSDNSM + DNVLNVVSQVDPDLLIVDSIQTFILEGFPGSRAGSPTQTMECANELLKLAKDPVRPRA + VFLVGQMNKSEEIAGLRALEHLVDTVLILDGDNEEELRGLSVSKNRFGSTWERGYFSM + TENGLESIDNPSEYFMTSRDKNEKVSGCALTVVKDGSRPIIVEIESLVSKTYTPYPSR + IGECVRREQLNTLISILEQRGRISLYDKDVVIKTTGGLKFKEPAVNLSIIMSIVSSVY + DKEIPNDTAFISDVGLTGELKKVPSLELRIRELDRRGFGHVYVAKNALIRSLDIKNIE + VHEVKSIQEVIGMVFK" + gene 389977..391062 + /locus_tag="Ccel_0337" + CDS 389977..391062 + /locus_tag="Ccel_0337" + /inference="protein motif:PFAM:PF02457" + /note="PFAM: helix-hairpin-helix motif; protein of unknown + function DUF147; + KEGG: cth:Cthe_1785 DNA integrity scanning protein DisA" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF147" + /protein_id="ACL74723.1" + /db_xref="InterPro:IPR000445" + /db_xref="InterPro:IPR003390" + /translation="MRLERLKNDSFLDVLKMMAPGTTLREGLENILKAKTGALIVIGD + SPEVIKIVDGGFTINKPYTSSHLYELAKMDGAIVVSKDLKVILYANALLIPDPTIVTT + ETGTRHKTAERFAKQTGEIVVCISQRRNVITLYKDSKKYILRDTSTILTRANQALQTL + EKYKSVLDAGIKKLNVLELEDIVTLNDVTYVIQRTEMVMRIVDEIDRYICELGNEGRL + VSMQLEELVQNVENNVWLVIEDYSIKKDGINTNDIVKHLRNLSNDELVDQTSVAKLLG + FSGATVSLDTSVLPKGYRMLSRLPKLPVTIMKNMINEFQNLQGVVKASIEDLDKVEGI + GEVRAKSITEGLLRIKEQTTMDKRSIY" + gene 391180..392226 + /locus_tag="Ccel_0338" + CDS 391180..392226 + /locus_tag="Ccel_0338" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74724.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(392416..392811) + /locus_tag="Ccel_0339" + CDS complement(392416..392811) + /locus_tag="Ccel_0339" + /inference="similar to AA sequence:KEGG:Cthe_1784" + /note="KEGG: cth:Cthe_1784 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74725.1" + /translation="MKDILVDDFQYTAQELLVRNKSILDLITKYQDSNSRVNRAVIKT + VTQCGCLSINAHKQDVSDDASFDEMKNSANGHVEGTLCDNCRDAIERDMGRNLFYLAS + ICNTLDLNLYDIILKENDRIRMLGKYNLR" + gene 393148..393627 + /locus_tag="Ccel_0340" + CDS 393148..393627 + /locus_tag="Ccel_0340" + /inference="protein motif:PFAM:PF02559" + /note="PFAM: transcription factor CarD; + KEGG: cth:Cthe_2940 CarD family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, CarD family" + /protein_id="ACL74726.1" + /db_xref="InterPro:IPR003711" + /translation="MYNVGDKIVYPMHGAGVIESIEEKEILGKTCSYYVMKIPIGDLK + VMIPTNNITDIGIRDVISVSEADSVFDFLKNGQHEIPSNWNKRYRENMVKIKSGDIFE + VADVVRGLMQREKEKGLSTGERKMLSSAKQILISELVLAKGINQHDVEVKIQEYLYG" + gene 393652..394692 + /locus_tag="Ccel_0341" + CDS 393652..394692 + /locus_tag="Ccel_0341" + /inference="protein motif:PFAM:PF01850" + /note="PFAM: PilT protein domain protein; + deoxyribonuclease/rho motif-related TRAM; + SMART: Nucleotide binding protein PINc; + KEGG: nth:Nther_0165 PilT protein domain protein" + /codon_start=1 + /transl_table=11 + /product="PilT protein domain protein" + /protein_id="ACL74727.1" + /db_xref="InterPro:IPR002716" + /db_xref="InterPro:IPR002792" + /db_xref="InterPro:IPR006596" + /translation="MLNRIIKISFSILGAITGVTILNTILLMNFKIGENLKVPLMLLF + SSVFCALFYFMAAKIIEVLIGFIDKIERGIQNVTMSELILGAAGLILGLIVANLVSTP + IIKIQIIGLPIAVIINILFGLMGVILSQRKKNESIMDIFKEQSSARNTKLIDTCTIID + GRIVDIFNAGFLEGDMVIPTYVLEELRHIADSQDGLRRARGRRGLDILNMLQKDNNNI + VKIDETDYPDIQETDEKLLRTAQKLKCKLVTIDYNLTKVAALKGIQVLNINDLANAVK + PLALPGEEMNILVVKDGKENGQGVGFLEDGTMIVVDGGKKYLGQTISVMVTSVLQTSA + GRMVFVKPNISD" + gene 394722..395432 + /locus_tag="Ccel_0342" + CDS 394722..395432 + /locus_tag="Ccel_0342" + /inference="protein motif:TFAM:TIGR00453" + /note="TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate + cytidylyltransferase; + PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; + KEGG: cth:Cthe_2941 2-C-methyl-D-erythritol 4-phosphate + cytidylyltransferase" + /codon_start=1 + /transl_table=11 + /product="2-C-methyl-D-erythritol 4-phosphate + cytidylyltransferase" + /protein_id="ACL74728.1" + /db_xref="InterPro:IPR001228" + /translation="MNQIIQSEKVTAIITAAGKGTRMKSSINKQYIEIAGVPVLARTI + SAFENCSEVDNIILVVNEEDINFCKNEIVEEFNFTKVISLVSGGAERQNSVYKGLCSI + RDKDGVVLIHDGARPFVTNENIVDCINAVREYGACGIGVRSKDTIKISDENGFVQLTP + DRSSLWSIQTPQGFMYEIIKNAHDKAVQNGYIGTDDMVLVEKLGIPVKIVEGNYQNIK + ITTPEDLIMGESLLSSGK" + gene 395452..397086 + /locus_tag="Ccel_0343" + CDS 395452..397086 + /locus_tag="Ccel_0343" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: cac:CAC1558 ABC-type transport system,membrane + ATPase component" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74729.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MGSLKSLLKIIPFIKKYRLFFCIGMVGTILCSVASVPIPYFIGY + ILDNVVAGSKSYKALYYYIGLIALLYVLRYVISFVAQYMFAKVSNEVTNEMRYSVIGK + VLDLPMNYLSSTEKGYVQSRIGECGNVSVVFSPSNIGLVLGLVDAVAAAIAMFSLNFK + LALVTVVLSPVFYFSSKASAGGFMKVTHQMLESNAVLNGECFEIINGIEDIKILNGKE + NQLKRFKTKLDDLVKKSIKQSKSILIFIENITIANNIGTLIILLIAGILIIRGQFTIG + LYTSFSLYIGRVFGASQGLATAGTTIKPACMSIERLYELLDMKGEDDGKTKNIENIID + SIKAENVTFRYNNNDRNVINSLSFEINKGEKVLLRGENGSGKSTLIKLLVGLYTPNEG + NILFNNTDLTTINNKSLRDRIGIVSQSIFLFRGTVLDNILYGQNEKKREDVELLIKKL + NLEAYINRLPKGLDSEISQNTAGISGGQAQVIAFIRAMLLEKDVVILDEPISNVDVET + RDIILNILKNNEYKGILIVVSHIVDNMEFINKVIEF" + gene complement(397373..397879) + /locus_tag="Ccel_0344" + CDS complement(397373..397879) + /locus_tag="Ccel_0344" + /inference="protein motif:TFAM:TIGR00151" + /note="TIGRFAM: 2C-methyl-D-erythritol + 2,4-cyclodiphosphate synthase; + PFAM: MECDP-synthase; + KEGG: cth:Cthe_2946 2-C-methyl-D-erythritol + 2,4-cyclodiphosphate synthase" + /codon_start=1 + /transl_table=11 + /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate + synthase" + /protein_id="ACL74730.1" + /db_xref="InterPro:IPR003526" + /translation="MCLNILKEMENTMKVGIGQDSHRFDFQNNSKKFILGGVIFDDVT + PLDGNSDADVVLHALTNAISGVTCVNILGKVSDEMCLERGITDSSEYLREALKYLVDV + KVVHVSISIECSYPKISPKIAEMRKSISELLGIPENCVGITATTGEGLTAFGQGKGVQ + AFCIVTAI" + gene 398062..399498 + /locus_tag="Ccel_0345" + CDS 398062..399498 + /locus_tag="Ccel_0345" + /inference="protein motif:TFAM:TIGR00408" + /note="TIGRFAM: prolyl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); + Anticodon-binding domain protein; Prolyl-tRNA synthetase, + class II-like; + KEGG: cpy:Cphy_3837 prolyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="prolyl-tRNA synthetase" + /protein_id="ACL74731.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR002316" + /db_xref="InterPro:IPR004154" + /db_xref="InterPro:IPR004499" + /db_xref="InterPro:IPR006195" + /db_xref="InterPro:IPR016061" + /translation="MAKDKKLVEEITSMNDDFGQWYTDVIKKAELVDYSSVRGCMVIK + PYGYAIWENIQKSLDTRFKETGHENVYMPMFIPESLLLKEKEHVEGFAPEVAWVTHGG + DEKLTERLCVRPTSETLFCEHYSNSIQSYRDLPKLYNQWCSVVRWEKTTRPFLRTLEF + LWQEGHTAHATAEEAQEETIRMLNVYADVLENVLAIPVIKGRKTEKEKFAGAHATYTV + ESLMHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGVTTRLIGAIIMV + HGDDSGLVLPPAIAPTQLVIIPVSQHKEGVLEKANELKQKLSAKFRVKMDDSDKMPGW + KFSEYEMKGVPLRIEIGPKDIEKNQAVLVRRDNREKIFVSLDNLEETVVNTLADVQKS + LLEKARELRDKKTYIAATLEEFDQIINSTPGFVKGMWCGERECEDLVKEKTGATARCM + PLEQEQLSDKCMCCGKPAKSMVYWGKAY" + gene 399663..400448 + /locus_tag="Ccel_0346" + CDS 399663..400448 + /locus_tag="Ccel_0346" + /inference="protein motif:PFAM:PF00188" + /note="PFAM: SH3 type 3 domain protein; SCP-like + extracellular; + SMART: SH3 domain protein; + KEGG: cth:Cthe_2948 allergen V5/TPX-1 related" + /codon_start=1 + /transl_table=11 + /product="SCP-like extracellular" + /protein_id="ACL74732.1" + /db_xref="InterPro:IPR003646" + /db_xref="InterPro:IPR007397" + /db_xref="InterPro:IPR013247" + /db_xref="InterPro:IPR014044" + /translation="MKKRKKAAIVLIVLVSAFTLLPIGTLQYRVDASQSYQNLASSAG + MITAQDVNLRTGPNTKFDSLYKLKKGHKLTVMGKLGDWYAVYDSANGNIGAVSARYLK + VAQPKAVAKAKKVNTVKSNSNETVQKAVAAKVIDVSPDEKALLDMVNNARREEGLNPL + TIDENLVKIARLKATDMKNNNYFSHTSSYYGTPFDMMKKYGVKFSIAGENLAGNQSME + KALTAWLKENGNNLYNKEFTHTGIGVVESPTYGKLFVEMFMKK" + gene complement(400581..401492) + /locus_tag="Ccel_0347" + CDS complement(400581..401492) + /locus_tag="Ccel_0347" + /inference="protein motif:TFAM:TIGR00005" + /note="TIGRFAM: pseudouridine synthase, RluA family; + PFAM: pseudouridine synthase; + KEGG: cth:Cthe_1962 RluA family pseudouridine synthase" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase, RluA family" + /protein_id="ACL74733.1" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR006145" + /db_xref="InterPro:IPR006224" + /db_xref="InterPro:IPR006225" + /translation="MRSITAEENHEGKKIDRVVRDFFPNLASGMLYKALRKKDIKVNG + VRIKEDYIVSFGDKIDIYIIDDYLIGRDDDGFSVVYDDDNLLIVNKETGIPVHPDKNQ + KEATLIDKLQSIYGPNLALCHRLDRNTSGLVIIAKNPATLEVMLEKIKNREIQKYYTC + IVSGKMEKKNAELVDYLEKNEKLSRVFINPEKTRNSVQIITRYRILASMNSLNLLEVE + LVTGRTHQIRAHLAYYGHPIIGDGKYGKNAENKQYNAKYQLLCASRLTFNFQSSARHL + NYLNKKTVSIDPPFSLEQVAGRQNKKL" + gene complement(401494..403926) + /locus_tag="Ccel_0348" + CDS complement(401494..403926) + /locus_tag="Ccel_0348" + /inference="protein motif:PFAM:PF00483" + /note="PFAM: transferase hexapeptide repeat containing + protein; Nucleotidyl transferase; + phosphoglucomutase/phosphomannomutase alpha/beta/alpha + domain I; + KEGG: cth:Cthe_1961 nucleotidyl transferase" + /codon_start=1 + /transl_table=11 + /product="Nucleotidyl transferase" + /protein_id="ACL74734.1" + /db_xref="InterPro:IPR001451" + /db_xref="InterPro:IPR005835" + /db_xref="InterPro:IPR005844" + /translation="MKAIIMAGGEGSRLRPLTCDLPKPMVPIMNKPVLEHTIGLLKSY + GITDIGITLLYHPQIIKDYFGSGHSCGVNIYYFLEESPLGTAGGIKNAREFLDETFIV + ISGDSLTDLNIENALEYHRSKKSIATLILTKVDVPLEYGVVLTDEDGSIKGFVEKPSW + GEIFSDMVNTGIYILEPEILSYIEVGKNTDFSRDVFPALLSSSKKIFGYVSNDYWCDI + GDTRSYINSHYDILNKNLKIDIGEELDENIWVGPGTVIDKNARIIPPCVIGSNCKIGS + GTVIGSYTVIGNNTIVKNDVSVVRSILWDNCYIEYGSELRGAILCNHVNLKNYVSVFE + NSVIGEGCKINERAIIKPNIRLWPEKIVEPLAIVDRNMIWGSRHNSKIFGENGISGII + NVDISPEYATRLGAAYGSHLKTGSKVVVSSTNSNSARMFKHAFISGILSVGVEVFNMS + SLLTPISRYAIGFLKADGGIHIKTDMDNPNVVRVDFMDSRGTSISRSSERKIENSFFR + EDFKRCSSQQISRLNNITDFSSYYVRNLIQNTNVNAIKQHNPKVCIFSRSEFVRSIVG + PMLTNMGCQVISHQNCVDISLVTSVLVETDCEFGAIIDSNGENLTLISREGIIVKDDL + FQAFISLIVFKRSPGTTFYVPITSSEVIERLALRYRCVVKRTKNCLQAVMDEILNRRN + NSADFDQLVLNFDAIAGLVKIIEYMCVSGITLNQLLLEIPKIYIDRKSIYCPWELKGT + VMRRIINDNKDKKAELIDGIKLYLEDGWVLIIPDADTPAFKIISEGSSAVTAKEHCVR + FHNIVERIITNS" + gene complement(403990..404286) + /locus_tag="Ccel_0349" + CDS complement(403990..404286) + /locus_tag="Ccel_0349" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74735.1" + /translation="MQEELVFLYNNISDAKNILGSLKDKGIQRAYLTTTEFGLLAGID + QKQSIKKFPGAFLSTVVKLVVEVEPDNKQNALSLLEGSFGVEDIKILKDYYNKR" + gene complement(404384..404797) + /locus_tag="Ccel_0350" + CDS complement(404384..404797) + /locus_tag="Ccel_0350" + /inference="protein motif:PFAM:PF04138" + /note="PFAM: GtrA family protein; + KEGG: pdi:BDI_1652 putative GtrA family protein" + /codon_start=1 + /transl_table=11 + /product="GtrA family protein" + /protein_id="ACL74736.1" + /db_xref="InterPro:IPR007267" + /translation="MNSFGILKDKFGNIMRQMVKYGLVGVINTIITMIVLFVLQNAFG + VSYKLANGAGYVCGFINSFILNKFWTFKGNQKSTLSQFIRFSLVFAVCYAMQLGFVVL + LVEKMHIEKNISQLIGMVFYTLISFLLNKVFTFKN" + gene 404956..405642 + /locus_tag="Ccel_0351" + CDS 404956..405642 + /locus_tag="Ccel_0351" + /inference="similar to AA sequence:KEGG:Tbd_2287" + /note="KEGG: tbd:Tbd_2287 putative integral membrane + protein" + /codon_start=1 + /transl_table=11 + /product="putative integral membrane protein" + /protein_id="ACL74737.1" + /translation="MSKFMKKISLLDTSKNQVPFSKNRALHTMMAAYAIVFIILSIKP + VNTFEWWYESIVPLTVIILLGLFYSKNRLTNTAYLCILTVLVLHAVGAHYTYTACPIG + MWMSRIFGFNRNHFDSIVNFFFGLLISIPVLESIYYRIRIRYIGACMLSVVIILAASA + FYELFQMFSTMILSDGRMEIFLGIQGDLWDSQKDMAFVVLGAFMSMSTCIIFRINKNH + KIHMVRYRKN" + gene 405659..406621 + /locus_tag="Ccel_0352" + CDS 405659..406621 + /locus_tag="Ccel_0352" + /inference="protein motif:PFAM:PF03851" + /note="PFAM: UV-endonuclease UvdE; + KEGG: cth:Cthe_1958 putative UV damage endonuclease" + /codon_start=1 + /transl_table=11 + /product="UV-endonuclease UvdE" + /protein_id="ACL74738.1" + /db_xref="InterPro:IPR004601" + /translation="MIFRLGFVAMTLDLEDCSPSGTVTYAAYNKLKDEAAKHARLVRV + ARCNINNTLRILKNSLALDIKVYRLTSKLIPLATHSELKDWNYVSDFCEEFERLGEYI + RANNFRISAHPDHFTILNPIKPEILESSLRDLDYHVRLFEAMGLYDCRYKLVLHVGGL + YGDKEKSIARFKENFLKLPDRISKRIILENDDKSFTAADVLEICEDLKIPMVLDVHHH + RCVNYGEKLGELLDRIYKTWDLQDDPPKVHYSSPKNEKEFRSHADYVDLTEFLDFLHT + AKKSERDIDIMLEAKMKDKALQKLSGELAEIPEITRLDKATFQI" + gene 406744..406863 + /locus_tag="Ccel_0353" + /pseudo + gene 407009..409165 + /locus_tag="Ccel_0354" + CDS 407009..409165 + /locus_tag="Ccel_0354" + /inference="protein motif:PFAM:PF00575" + /note="PFAM: RNA binding S1 domain protein; + SMART: Resolvase RNase H domain protein fold; + KEGG: cth:Cthe_1955 RNA binding S1" + /codon_start=1 + /transl_table=11 + /product="RNA binding S1 domain protein" + /protein_id="ACL74739.1" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR006641" + /translation="MTDIVGQLIREFNLKPFQVQNTVKLIDEGNTIPFIARYRKEVTG + ELNDQVLRELNERLVYLRNLDERREDVRRLIEEQGKLTEEIVKSLDSAMTLQEIEDIY + RPYKLKRKTRASVAREKGLEPLATIIYSQLPTKTSINEIASRYINEEKGINSVDEAIK + GALDIIAEEVSDNAEFRKVLREIIFKNGLVMSFGKKDEDSVYRMYYDFKEPVSKIARH + RVLALNRGEKEDFLSVKIDLNEDLCLNFLKSNTLKNTNTEMSKYVESAVEDSFKRLIF + PSLERDIRNQLTELAEDQAIKVFSENLRNLLLQPPVKDRVVLGLDPAYRTGCKLAVVD + GTGKVLETTVIYPTPPQNKIDEAKKKVKELIKKYEVDIISIGNGTASKESEIFVADLL + KEIDREVYYMVVSEAGASVYSASKLGAEEFPDFDVALRSAVSIARRLQDPLAELVKID + PKAIGVGQYQHDMNQKRLDESLGGVVEDCVNNVGVDLNTASAPLLSYVSGISTAIAKN + VVEYREENGKFKARNELKKVKKLGNKTFEQCAGFLRITDGENILDNTSVHPESYKAAK + LLLEKMGYSLEDVRAKKLSGLDNKVQQAGMSRIAEELGIGVPTLKDIINELLKPGRDP + RDELPKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKY + VKNPMDVVAVGDIVKVKILEVDVERKRISLTMKEIN" + gene 409244..410131 + /locus_tag="Ccel_0355" + CDS 409244..410131 + /locus_tag="Ccel_0355" + /inference="similar to AA sequence:KEGG:Cthe_1954" + /note="KEGG: cth:Cthe_1954 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74740.1" + /db_xref="InterPro:IPR000010" + /translation="MGTVNKALHLIAKRPSVLLLTALISIVVCVFEYFFMTLFYGITM + FKTGSPFDDYVNIIQFVINAVSVPETAVKIILVLAIAVVSASLILGLIFSGCFNILYN + AVQGKEKKAGSEFVHGVKKYFLRMISLNLWTICAVFIFVIYVLIATIPAAIVVDNSIS + GTMNPLAGVVLSIITAIVLFFSYTFFRQYIAFWYPSAIAYEKSHFKMAKKVSDRNFWP + LLSKFIAFDIILVLFDILYIIANFTLANTQVVSGTINTILIVVNIVFKTIVFAILICF + VFSSFKKCNDDYKYKEQIR" + gene complement(410128..410514) + /locus_tag="Ccel_0356" + CDS complement(410128..410514) + /locus_tag="Ccel_0356" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74741.1" + /translation="MVYRKRPPNSRRYNKNHSAQQQSGHEQNEQNLTITEEQTVNPQT + EEALPPKEPASRETKTPKPLSFLSSILGTGDRTERSGSPLFTVFDYDIYFDDLLLVGL + IVLLFTDKVEDELLLIILLYLLLDIF" + gene complement(410568..410969) + /locus_tag="Ccel_0357" + CDS complement(410568..410969) + /locus_tag="Ccel_0357" + /inference="similar to AA sequence:KEGG:Cthe_1951" + /note="KEGG: cth:Cthe_1951 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74742.1" + /translation="MSDDMGDKIKQIAEMLGQDSNSGIPDNVKGLLNMFMSANNSKDE + TSSDDNSSEKSNPPEETSRADTDDLADMARKMKKAMNMLNTAKDPRVNLLNAVKPYLN + DNRQKKLQKCMKIIKIGSLTKMLDESEGRSV" + gene complement(411006..411320) + /locus_tag="Ccel_0358" + CDS complement(411006..411320) + /locus_tag="Ccel_0358" + /inference="similar to AA sequence:KEGG:Cthe_1950" + /note="KEGG: cth:Cthe_1950 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74743.1" + /translation="MGDSLGKKIQEMMQDKMVQSKVNKAIDMLKKDSTKDLEKKLSAI + NKDELMEKVNEFDEEKLKNIKIDKDEIKKKITQKDLDKLQKILGKDSDVIMKKVNDFL + NS" + gene complement(411480..411686) + /locus_tag="Ccel_0359" + CDS complement(411480..411686) + /locus_tag="Ccel_0359" + /inference="similar to AA sequence:KEGG:CLI_3364" + /note="KEGG: cbf:CLI_3364 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74744.1" + /translation="MGCFGGSSNGFDWWWILILIIIICCCCGGNNGFFGGNFFNEDCD + WLVCLAVILLIFFLCNNQDDCCRD" + gene 411861..412736 + /locus_tag="Ccel_0360" + CDS 411861..412736 + /locus_tag="Ccel_0360" + /inference="protein motif:PFAM:PF07992" + /note="PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; + KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase" + /codon_start=1 + /transl_table=11 + /product="FAD-dependent pyridine nucleotide-disulphide + oxidoreductase" + /protein_id="ACL74745.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR013027" + /translation="MVDVIIIGKGPAGISASLYTVRAGLRTLVIGLDNSVLNKADRIE + NYYGFAEPVSGKYLLEQGEKQARRLGVKFIQSEVIALEKAEYFEVYTTQDNYSAKAVL + MATGQQTKKVNIDGLEKFEGRGVSYCTTCDGFFYRGLKVGLVGFKDYAIHEVMELEPL + TKDITIYTNGNELQLTDKYKFHASRFTINDKKITSVVGKEVVEGIVFEDGSVANLDGL + FVAFESASSIDFARKLGVITKNNSIVVDENQSTNLKGLFAAGDCIGGFKQISTAVGQG + AMAGKRIIEFVRNNS" + gene 412913..414319 + /locus_tag="Ccel_0361" + CDS 412913..414319 + /locus_tag="Ccel_0361" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + KEGG: afl:Aflv_2620 sporulation histidine kinase A" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL74746.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MFGIFILLWIISILIIYANPKEYWAWCASLCLLFNGFGGLSAVL + GDKLIPYLEACGNENLIFASRIFKGTADILQHYFATYVFLIFVLLFTNFLNIQMKSII + KKTIVGLLSVPSILMLFLYPITPDFNPNYGILSCWVCVYTLLANIILIISIVKEKDDY + TKTQRILTSLYAVPSTICVLWTSYISVAIGYSRVWKANVWVIAGEFILFIVFCLKYGM + LGIHFKIERINIDNNIDSIIGGMSIVSHAIKNEVSTINLCVETIMCVEKTSPGMAHKL + SIIKNSCKNLLEFTRKVSEIKLYKMNFKPCLLSEITTEVINQVAPSICEKNIQIINES + KIDITMLIDPVHVSEVLKNLIINAIEAIPSEGIISVNAEFLNNKKLCIRVSDNGIGIP + KDFINKVMTPFFSTKKGKNNFGLGLSYCFKVMKSHNGNLQIKSKENQGTDMCLIFPIN + KVVHVYSKSLPKNKSYHL" + gene 414453..415190 + /locus_tag="Ccel_0362" + CDS 414453..415190 + /locus_tag="Ccel_0362" + /inference="protein motif:PFAM:PF10646" + /note="PFAM: cytochrome b5; + KEGG: cth:Cthe_1942 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="cytochrome b5" + /protein_id="ACL74747.1" + /db_xref="InterPro:IPR001199" + /translation="MRKLICLFMVFGTIFTMLTGCGFKSEETQSDELTPVSSLTIGQE + EANGLKDKTPVQLYFINEQGIKLAAETRYIQNTDVGKGNEHMATVILKELISGPAKGS + LLKASVPKEAKVLTDIKIKDGVATVDLSKDFIEKHPGGKKNEQLTLYSIVNTLTEIKD + ITSVQFRVNGKVTKEFKGSYQIDIAYSRDTHLISNEPGKDSTIKTTAEDKDNTRDKTA + QPTKEDETKKTNSDAETNADLEDEILE" + gene complement(415298..415513) + /locus_tag="Ccel_0363" + CDS complement(415298..415513) + /locus_tag="Ccel_0363" + /inference="protein motif:TFAM:TIGR02605" + /note="TIGRFAM: regulatory protein, FmdB family; + PFAM: Putative regulatory protein FmdB; + KEGG: cth:Cthe_1941 FmdB family regulatory protein" + /codon_start=1 + /transl_table=11 + /product="regulatory protein, FmdB family" + /protein_id="ACL74748.1" + /db_xref="InterPro:IPR013429" + /translation="MPFYDLKCSKCGSEFNVMAKMSQRENREIKCPDCGSNDLETIFK + NVNIIQSRKDSGGDCPKRHVCGGCCNH" + gene 415648..416586 + /locus_tag="Ccel_0364" + CDS 415648..416586 + /locus_tag="Ccel_0364" + /inference="protein motif:TFAM:TIGR02772" + /note="TIGRFAM: Ku protein; + PFAM: Ku domain protein; + KEGG: bha:BH2208 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Ku protein" + /protein_id="ACL74749.1" + /db_xref="InterPro:IPR006164" + /db_xref="InterPro:IPR009187" + /translation="MHTVWKGSISFGLVNIPVKMFTATEDKDIRFKYIHKECHSPVKY + KKVCPVCNKEVQPEDIVRGFEYEPGKYVIMTGEDFESLQVKSEKTVEIIDFVKLEEVD + PVYFDKTYFLAPQETGGKAYTLLREALGQKEKIAVSKITIRDRESLAVIRVYKNVLVL + ETIFYPDEVKDSAQVPGIPEATKTTPAELDMATQLIDNLTTAFDPSKYVDTYREKLVE + LINAKVEGKQVVARKEVEKENVVSLMEALQRSIQMSKGTNKNEKDKDADKADKSVKNV + KNSKKDQVSKVENTKNITTEEKPKKRTRKTREKVES" + gene 416583..417557 + /locus_tag="Ccel_0365" + CDS 416583..417557 + /locus_tag="Ccel_0365" + /inference="protein motif:PFAM:PF01068" + /note="PFAM: ATP dependent DNA ligase; + KEGG: nth:Nther_0138 ATP dependent DNA ligase" + /codon_start=1 + /transl_table=11 + /product="ATP dependent DNA ligase" + /protein_id="ACL74750.1" + /db_xref="InterPro:IPR012310" + /db_xref="InterPro:IPR016059" + /translation="MKWIIPMEPVICPNVKTGADYIHEIKWDGIRGMVYIQDGSVKIY + TKKGKERTGFYPELDVFKKGLGGQNAVFDGELVVLDENGVPSFYKSLIRERVRNSGKL + KYYTNAYPVCYMVFDILQYGDNILVNMPLMDRKQILDKNLSSITGNDTGIFLTKVYPN + GKDLFEKMKEQNMEGIVSKKTDSLYIGGKKHEAWFKTKFIKKMLCVVGAIQWKSLQPN + SLVLGIKPGDSQKLVYVGKASIGLKQSDLMLIREYSGQLEQEQCPFTSEEMVQLDRTG + EKFTWLYPALTCWISFLELTNDGHLRHPKIEGFALLPAEEADGKVLTE" + gene 417557..418471 + /locus_tag="Ccel_0366" + CDS 417557..418471 + /locus_tag="Ccel_0366" + /inference="protein motif:TFAM:TIGR02778" + /note="TIGRFAM: DNA polymerase LigD, polymerase domain + protein; + PFAM: DNA primase small subunit; + KEGG: swo:Swol_1124 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase LigD, polymerase domain protein" + /protein_id="ACL74751.1" + /db_xref="InterPro:IPR002755" + /db_xref="InterPro:IPR014145" + /translation="MATVTDVLKVEIENKVIDIKNPDKLFWPEAGITKLEYVKTMTKL + APFLIKYSKHRMLTSIRYPHGINDKSFFQKEKPQGTPEWVETVEFNQKNYINLNSAAT + LVWLCTQAALELHTSFNVHEKPNHPSSLVFDLDPDDDLHFEDVAELAGRIHETLEALG + IMDFIKTSGATGLQIFVPVAAKFDYDTARSLNEFFAQYFAEKLRSTVTIERMKKKREG + KIYFDWQQMWTGKSMITAYSARAVKSAAVSAPIEWSELNDVRPEMFTLKNIINRLEQK + GDIFEPSLKCDNSPQLNEISKQIEAAKK" + gene 418584..419597 + /locus_tag="Ccel_0367" + CDS 418584..419597 + /locus_tag="Ccel_0367" + /inference="protein motif:TFAM:TIGR01179" + /note="TIGRFAM: UDP-glucose 4-epimerase; + PFAM: NAD-dependent epimerase/dehydratase; short-chain + dehydrogenase/reductase SDR; 3-beta hydroxysteroid + dehydrogenase/isomerase; polysaccharide biosynthesis + protein CapD; dTDP-4-dehydrorhamnose reductase; Male + sterility domain; + KEGG: drm:Dred_3002 UDP-glucose 4-epimerase" + /codon_start=1 + /transl_table=11 + /product="UDP-glucose 4-epimerase" + /protein_id="ACL74752.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR005886" + /db_xref="InterPro:IPR005913" + /db_xref="InterPro:IPR008089" + /db_xref="InterPro:IPR013120" + /translation="MKVLVTGGAGYIGTHTCVELLEAGFEVIVVDNLCNSKETAIERV + EKITGKKIKFYKVDILDKEALEQVFINNQPDSVIHFAGLKAVGESVSIPLKYYHNNIT + GTLILCELMEKYGVKNLVFSSSATVYGDPASVPISEEFPLSVTNPYGRTKLMIEEILK + DLHVADASWNIALLRYFNPIGAHESGTIGEDPNGIPNNLVPYITQVAVGKLKEVNVFG + NDYDTVDGTGVRDYIHVVDLAKGHIKALEKLTNEHIGIREYNLGTGNGYSVLQVIKAF + SEACGKEIPYKITGRRPGDIAECYAKPDRAKSELGWTAEKGLSEMCVDSWRWQSQNPE + GYK" + gene 419626..420555 + /locus_tag="Ccel_0368" + CDS 419626..420555 + /locus_tag="Ccel_0368" + /inference="similar to AA sequence:KEGG:Cphy_0247" + /note="KEGG: cpy:Cphy_0247 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74753.1" + /translation="MENNTALVIMAAGMGSRYGGLKQIDPVGPNGEIIMEYSIYDAIR + AGFNKVVFIIKKEIEDTFREVIGKKIEGIIDVEYVYQKVDNLPQGFSVPDGRVKPWGT + GHAVLSAKDAVKTPFAVINADDFYGAETHRLLKGFLTNNQDADNKYKYCMVGFVIENT + LTENGHVARGVCNVDSQGNLIDIHERTKIVKFGNETKYTEDDTNWIKIPEKSIVSMNT + WGFNPSILHELEDRFPDFLRKNKENILKAEYFLPTVVDDLIKEGKADVKVLSTADKWY + GVTYKEDKPIVKKSISDMVSGHKYPNRLWENIK" + gene 420696..420959 + /locus_tag="Ccel_0369" + CDS 420696..420959 + /locus_tag="Ccel_0369" + /inference="similar to AA sequence:KEGG:Csac_2372" + /note="KEGG: csc:Csac_2372 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74754.1" + /translation="MYTDKTLVCKECENEFIFSAGEQEFYAEKGFQNEPTRCKACRSK + RDHSSKRELFEAVCAECGQTTKVPFKPHLDKPVLCSKCFANKK" + gene 421335..421865 + /locus_tag="Ccel_0370" + CDS 421335..421865 + /locus_tag="Ccel_0370" + /inference="protein motif:TFAM:TIGR00741" + /note="TIGRFAM: ribosomal subunit interface protein; + PFAM: sigma 54 modulation protein/ribosomal protein S30EA; + KEGG: cth:Cthe_2875 sigma 54 modulation protein / SSU + ribosomal protein S30P" + /codon_start=1 + /transl_table=11 + /product="sigma 54 modulation protein/ribosomal protein + S30EA" + /protein_id="ACL74755.1" + /db_xref="InterPro:IPR003489" + /translation="MNIIISGKNIEITEALREKVTKKVKKLEKFFNSDTEVHVTLSVQ + RVSQIVEITIPFNGVTLRAEDQNEDMYTSIDRVIDLIERQIRKNKTRLERRLHDHDFK + VDNSKFTYDVQEETEFKVVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYNADSRQVNV + VYKRKDGNYGLIEPEF" + gene 422059..423936 + /locus_tag="Ccel_0371" + CDS 422059..423936 + /locus_tag="Ccel_0371" + /inference="protein motif:PFAM:PF00884" + /note="PFAM: sulfatase; + KEGG: cac:CAC2802 phosphoglycerol transferase" + /codon_start=1 + /transl_table=11 + /product="sulfatase" + /protein_id="ACL74756.1" + /db_xref="InterPro:IPR000917" + /translation="MLGKPSYGIVMVNRRRLGRKTGLVNYLAQEWMAILTLAVLLFKS + IVLMGFVYSPDKSVIDITRGFNNIRYMSVCVAFLIIIVSFNYLAKGKGRLWLLLILNF + LCSFLYVFDAVYLRANGNFLSTQLLRQTGNVNNLWGSIFAMFRPCDIVFFIDIPILVA + ILIITRKMYYSSPLFTSMKTRLIAFGSLFAMSVAFIIGSYIVIDVYGNNKYAYIFHTY + WKPEATICNASPLGYHLYDCYVFFADFRPYEISEKERTEIQKWIDDKKENLPDNSYKG + MYQGKNLLVLQVESLENFVIGQSVNGQEITPILNKLLKNSIYFDNYYTQVNEGTSSDA + ELMTNTSVFPVRKGSTFFRFPYTEYNSLPKIMGKYGYSTKAIHPDDGAYWNWKEALTN + MGFQQCIDSKSFKMDEIIFLGLSDGSYFRQIKDTIIQQKQPFYNFMITLTSHSPFEMP + KEHQYLNLDSYLENTRLGGYFQSINYTDRYIGTFLDELDKAGILDNTVVAIYGDHDSV + HKYFDDQIREIKPSQSWWLENDKKIPLILYEKGQTPQVIHTTGGQIDLMSTLLYSFGI + EKSEYESTSFGRNLLNTQQDYVLLADGEFRGNIDKAKQKELLDGLEYADMAIKTNFFK + K" + gene 423954..424457 + /locus_tag="Ccel_0372" + CDS 423954..424457 + /locus_tag="Ccel_0372" + /inference="protein motif:PFAM:PF01202" + /note="PFAM: shikimate kinase; + KEGG: mem:Memar_2255 shikimate kinase" + /codon_start=1 + /transl_table=11 + /product="shikimate kinase" + /protein_id="ACL74757.1" + /db_xref="InterPro:IPR000623" + /translation="MKNIILIGMPSAGKSTVGVIVAKHRGMSFVDTDVLIQTTQGRLL + QEILNNDGTDAFLKIEESSVLSLNCSDTVIATGGSAVYSEKAMDYLKRTGTVIYLYVD + METVNKRLKNLKTRGVVLGPGESLEYIYSKRQPLYEKYADIIIDCSETTIDSTVEMIH + ERLDSLS" + gene 424571..426928 + /locus_tag="Ccel_0373" + CDS 424571..426928 + /locus_tag="Ccel_0373" + /inference="protein motif:TFAM:TIGR01073" + /note="TIGRFAM: ATP-dependent DNA helicase PcrA; + PFAM: UvrD/REP helicase; + KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent DNA helicase PcrA" + /protein_id="ACL74758.1" + /db_xref="InterPro:IPR000212" + /db_xref="InterPro:IPR005751" + /db_xref="InterPro:IPR014016" + /db_xref="InterPro:IPR014017" + /translation="MDLLNGLNKEQKEAVLHNEGPLLILAGAGSGKTRVLTHRIAYLI + EQHGIYPSNILAITFTNKAAREMKERIAGLIGDLSNDMWVGTFHSICIRILRRDIEKL + GYDRSFVIYDTQDQQVVIKECIKELSINEKNFPPKSVLETIGKQKDELIDAVHYEKLY + ASDFRMGKIAKIYKLYEKKLKANNALDFDDIIMNTIKLFDKYPEVLDYYQRRFRYILV + DEYQDTNTAQYTLVRKLSEAQENLCVVGDDDQSIYGWRGANIRNILDFEKDFKKCCTI + KLEQNYRSTQNILDAANHVIGNNTGRKCKSLWTDNKGGSKIVICENDNEHEEALYAAR + EIQRLIFDEDRKYKDFAVLYRINAQSRVLEEMFMREGIPYKIVGGQKFYDRKEIKDII + AYMRLVQNPGDNVSLKRVINVPKRGIGDTTVENAEILAYQGDVSLFTVISNAEEFPSL + KRAAQKLGNFSLMINKFRTMKEHMTISQMLDMVVEDSGILREYELENTVEAQSRIENI + KELKSVAIEFEKQSEDNSLEEFLAHISLVSDIDSLQEDQDYVVLMTMHSAKGLEFPVV + FIPGMEEGVFPGYRAITEGPEQLEEERRLCYVGITRAREKLYLSNARFRTLFGNSSYN + RPSRFLAEIPEELVEYPFKSTSHTRNTSQNSGSAFKQSGDRIPRTNPAVASGTPTGSG + SLKDLLNSNLVTRGFGGSSAGTSGKNPSGQQSNSFGRTPMKSSSGASDSSVAFSVGDK + VEHKKFGKGTISKVTADSNDQILEIQFEGAGMKRLMASMANLVRL" + gene 426951..428303 + /locus_tag="Ccel_0374" + CDS 426951..428303 + /locus_tag="Ccel_0374" + /inference="protein motif:TFAM:TIGR03356" + /note="TIGRFAM: beta-galactosidase; + PFAM: glycoside hydrolase family 1; + KEGG: amr:AM1_2790 beta-glucosidase" + /codon_start=1 + /transl_table=11 + /product="beta-galactosidase" + /protein_id="ACL74759.1" + /db_xref="InterPro:IPR001360" + /db_xref="InterPro:IPR017736" + /translation="MAFKEGFVWGTATASYQIEGAVNEGGRGESVWDEFCRMKGKIDD + DDNGDSACDSYHRYSEDIQLMKEIGIKAYRFSISWTRILPDGIGEINMEGVNYYNNLI + NGLLENGIEPYVTLFHWDYPMELQYKGGWLNPESPLWFENYAAICSRLFSDRVKYWIT + SNESQCYIGFGYGTGWHAPGFKLPVNQVVRAWHHNLKGLGLAAKAIRENAKGEVKVGL + VACGEVGIPASDSEADMQAARNVLFDREHSEDSIDFGYGDLFEPALKGEYPKSLIPYL + PKGWQEDMKDICVPLDFLGVNAYIGSIVEACENKKYRHLKLPVGIGKTSMEWPFKPET + LYWVTRFISERYKLPVYITENGMANNDWISTDGKINDTQREDYLNQYLSALSKSIDDG + ADVRGYFYWSLLDNFEWAYGYAKRFGLVYVDYSNFSRTLKQSALRYKKIIELNGEVLK + " + gene 428407..428976 + /locus_tag="Ccel_0375" + CDS 428407..428976 + /locus_tag="Ccel_0375" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 + domain protein; Sigma-70 region 4 type 2; + KEGG: dsy:DSY4418 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL74760.1" + /db_xref="InterPro:IPR000838" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MDVSDIAILKEYKKNRRRGLELVYDRYKKYVYTIAFHYAGNKED + ALDITQEVFISVFKSMEGFKEQFSMLPWIKKITVNKCLNFLRSKKPNLSLNEINENGD + ELQSIISSNEKTDDEVLCKETRQILEQSIGSLPERERMVVLLRHIKQMKYSEIAIVMK + LPPGTVKTLIHRARKTIKENMISLGIWEV" + gene 428979..429377 + /locus_tag="Ccel_0376" + CDS 428979..429377 + /locus_tag="Ccel_0376" + /inference="similar to AA sequence:KEGG:DSY4419" + /note="KEGG: dsy:DSY4419 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74761.1" + /translation="MSCDKVDASLLQEYLESTIDPLEKIFIGNHLKICKECRRELSEL + KLLLYDLDDKSNYIIEYPPELETMRDDIIDSFLGKRKSPSKRIIEMQVETIKTTGKFI + EFLPGSKQAPKVLKQASKGLKKGVKKLIAK" + gene 429400..430101 + /locus_tag="Ccel_0377" + CDS 429400..430101 + /locus_tag="Ccel_0377" + /inference="similar to AA sequence:KEGG:DSY4420" + /note="KEGG: dsy:DSY4420 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74762.1" + /translation="MVALIITLKIISYVFLIIAALILLIIFVPFKYYAEGAKNETIVV + KGYANWLFGAVTIRFNYNTQDGFDTKFNLFGIKKGFKKKNESEPLKQVRESKLKKTKD + KPAYSYFTYEVFMRGLKSVFKILNHFKPSIFRIDAEVGFEDPMYTGLLCAIRNTWFAS + FNKDSIRIETNFEEETLEGSFLIGGGIQIFYLILVGIEFVFSKPFKSILFKNMKYKIK + RRLKKWRKVSIFVKT" + gene 430068..430457 + /locus_tag="Ccel_0378" + CDS 430068..430457 + /locus_tag="Ccel_0378" + /inference="similar to AA sequence:KEGG:DSY4421" + /note="KEGG: dsy:DSY4421 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74763.1" + /translation="MAKGFDFCENMSVIFDKLENFLKTKTVIGEPIKIGDVTLIPFIN + MSFGLGLGGGTGNDDKGMGGEGGGGGTGVRISPTAVLVISGDKVELLPIKKSGGLDKL + LDMVPGIVEKIQEKKEEEDSKNELKEE" + gene 430768..432966 + /locus_tag="Ccel_0379" + CDS 430768..432966 + /locus_tag="Ccel_0379" + /inference="protein motif:PFAM:PF03442" + /note="PFAM: coagulation factor 5/8 type domain protein; + glycoside hydrolase family 5; cellulosome protein dockerin + type I; protein of unknown function DUF291; + KEGG: cth:Cthe_0821 coagulation factor 5/8 type-like + protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF291" + /protein_id="ACL74764.1" + /db_xref="InterPro:IPR000421" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005102" + /translation="MNKLFFIVSLLAALLIFPITASAATDSTHPGFRVEGRFLYDNTG + EKVILYGVNKMCIWTDKDGVPSFSEIAKTGANCVRITWGLDGSAEDLDTVIRNCRAEH + MIPIIELHDATGDWSKLPLLVNYWVRPDIVNVIKKHQEYLLVNIGNEVGQTVTEETFK + ADYESAVKKMRDAGIHVPLVIDASSYGQSIDMLQACGPYLISADPDKNLMFSVHMWWP + YMWGHSDQEVIDEIAQSVNINLPLIVGEFGHMWDETENGKIPYKTIMEQCYKNQIGYL + PWEWGPGNNPQTFLDMTSDSTFATLNDYGKEVMLNNQYSVKNIAKRPASMLSNLPPVL + PKEPLPYGNLAYKKPVTASSIESTQNNESNIVDGDFETRWASQISDPSWICVDLGAKK + DINRLIICWEAAYATQYKIQVSDDKSTWTDVITQYNGTGKTEDIKLSCSGRYLRIYGM + QRINYQWPYSIWEIGVYGPESELSASISPAVAVFDKNPTNAADISVTLDSKSNTFNEV + LNGTSVKLVAGQDYVIQDKTTLIIKKEYLLGLSEGTTKLIFDYSDGVDPVLAIAVGNT + TPDGSVQNPIISPSSVTYDRTSATDLRVTISPNGNTLTSIINGSEPLVPNVDFTISGD + TVTIMRSYLATQPSDNLNLTFDFSGNGIDPVLTVTFLKDTICGDANQDGVIDALDYVI + LKQHLLGLVTLNNDVINILDLNLDGTTDAIDLSIFKQYLLGKITYLPVTP" + gene 433147..434406 + /locus_tag="Ccel_0380" + CDS 433147..434406 + /locus_tag="Ccel_0380" + /inference="protein motif:TFAM:TIGR00443" + /note="TIGRFAM: histidyl-tRNA synthetase 2; + PFAM: tRNA synthetase class II (G H P and S); + KEGG: cth:Cthe_2880 ATP phosphoribosyltransferase + regulatory subunit" + /codon_start=1 + /transl_table=11 + /product="histidyl-tRNA synthetase 2" + /protein_id="ACL74765.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR004517" + /db_xref="InterPro:IPR006195" + /translation="MSRWKIYTPDGVQDILFDECYKKREIEKRIRNTFRSYGYYEIET + PTIEFFDVFSSEIEHFPQESMVKFFDQKGRILVLRPDITVPVARITATKNRDVQVPIK + YSYIGNVFRFNEVGGGRQNEFTQAGVEMLGDSSSESDAEIIAMAINTLKSVGLKEFKI + EIGQVEFFKGLAEEAGFSNEDIDAISKQIDKKDLVGVEEILNRYDISTELREIVLKLT + GLFGSVDVIKEFKKASINGRSLKAIENVEEVVSILCDYGLSEYVSIDLGMLKSLNYDT + GITFRGFTNGVGFPILSGARYDNLTSSFGKECPATGFSLRINMLMTAMEKAGHTFERP + SVDSLVCYEKTNRKRAIEIAEALRKQDMKIETFVLTKGIDQAKKYAASKKIGGIIYIR + DNDKITVYDIKNNITEETSFDTLLNNQ" + gene 434437..435081 + /locus_tag="Ccel_0381" + CDS 434437..435081 + /locus_tag="Ccel_0381" + /inference="protein motif:TFAM:TIGR00070" + /note="TIGRFAM: ATP phosphoribosyltransferase; + PFAM: ATP phosphoribosyltransferase catalytic region; + KEGG: cth:Cthe_2881 ATP phosphoribosyltransferase + catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="ATP phosphoribosyltransferase" + /protein_id="ACL74766.1" + /db_xref="InterPro:IPR013820" + /translation="MRYLTIALSKGRLTDMSVEIFEKIGIDCTELKSSTRKLILSDEK + NKIKFFLAKPADVPTYVEYGAADIGIVGKDTLLEEGRNLYEVLDLGFAACRMALAGPA + ELQGKIDELNIKRVGTKYPNITRNYFEKTRRESVEIIKLNGSVELAPLVGLSEVIVDL + VESGRTLKENGLVVLDTIADISARMVVNRVSMKMENERIQKIIDGVRDELSVRG" + gene 435086..436390 + /locus_tag="Ccel_0382" + CDS 435086..436390 + /locus_tag="Ccel_0382" + /inference="protein motif:PFAM:PF00815" + /note="PFAM: histidinol dehydrogenase; + KEGG: cth:Cthe_2882 histidinol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="histidinol dehydrogenase" + /protein_id="ACL74767.1" + /db_xref="InterPro:IPR001692" + /translation="MLNIVDLRSDFDGSAAKNLYKKLTQRTATQNGGNIIDIVAEIID + NVKQNGDSALKEYTKKFDKAEIETIKVTEEEITSAYKNVDPQLVETIKKSKQNIWSFH + VRQLQNSWIDPKENGTMLGQLVRPLEKVGLYVPGGTAPLISSVLMTAVPAKVAGVEKL + IMCTPPSQDGSINPAILVAAREAGVDEVYRAGGAQAVAAMAYGTETIPAVDKVCGPGN + VYVATAKRLVFGDCDIDMFAGPSEILVIADSSAVPEYVAADLLSQAEHDMLASSVLVT + DDVSLLDSVKTEIEKQLVILKRNEIIEKSLKDYGFGILVDNIEEAIEVSNNIAPEHLE + LCVKEPMSILGMIKNAGAIFVGNYSPEPLGDYMAGPSHVLPTSGTARFSSPVNVDQFI + KKTSLIYYNKQSLETTSSDIIRFAEAELLDAHANAIKVRFKK" + gene 436433..437509 + /locus_tag="Ccel_0383" + CDS 436433..437509 + /locus_tag="Ccel_0383" + /inference="protein motif:TFAM:TIGR01141" + /note="TIGRFAM: histidinol-phosphate aminotransferase; + PFAM: aminotransferase class V; aminotransferase class I + and II; + KEGG: cth:Cthe_2883 histidinol phosphate aminotransferase" + /codon_start=1 + /transl_table=11 + /product="histidinol-phosphate aminotransferase" + /protein_id="ACL74768.1" + /db_xref="InterPro:IPR000192" + /db_xref="InterPro:IPR001917" + /db_xref="InterPro:IPR004839" + /db_xref="InterPro:IPR005861" + /translation="MIEELIRSEIRSFIPYNANQQPYKIKLDANESPFTLPPQMRKKL + AEYILEDPQLNLYPDTDSVQLRQALGEYWSVDKENIIVGTGSDQLIQIIANVFLEKGD + KVLYPTPSFGMYKDSCVIAGGRAVDYILDQNDNFSYSADKIIKTYELEQPKVIYICNP + NNPTGNLMPQDEILRVLKACTKSVVVVDEAYAEFSDTTVIPFIKEYENLLILRTFSKA + FGLAGIRCGYSIASEKLTRAVNLTRPPYNISSLSQFTAALILSYKEEIQNNIQYLVEE + RERVLSKLKEIDGLKVYSSAANFILIKVQNSKDIYRKLCEKGIFVRAFSSSPLLSDCM + RITIGTQEQNSILLDELYAICYNK" + gene 437571..438155 + /locus_tag="Ccel_0384" + CDS 437571..438155 + /locus_tag="Ccel_0384" + /inference="protein motif:PFAM:PF00475" + /note="PFAM: imidazoleglycerol-phosphate dehydratase; + KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate + dehydratase" + /codon_start=1 + /transl_table=11 + /product="imidazoleglycerol-phosphate dehydratase" + /protein_id="ACL74769.1" + /db_xref="InterPro:IPR000807" + /translation="MREGLVTRNTKETQINVKISLDGKGDCQANTGIGFFDHMLVLFT + KHGLMDAYFDVKGDLHVDSHHTIEDTGIAMGLAIRQALGDKKSIRRYGTAYVPMDEAL + VLVSLDLSDRPYLVFDAQFSQPMVGQMDTQMVEEFFRAVAFNAGITLHIKVLHGSNCH + HIIEAMFKAFGRAIDDATRLDTRIEGVLSTKGTL" + gene 438189..439085 + /locus_tag="Ccel_0385" + CDS 438189..439085 + /locus_tag="Ccel_0385" + /inference="protein motif:TFAM:TIGR00081" + /note="TIGRFAM: + phosphoribosylaminoimidazole-succinocarboxamide synthase; + PFAM: SAICAR synthetase; + KEGG: cth:Cthe_2885 + phosphoribosylaminoimidazole-succinocarboxamide synthase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylaminoimidazole-succinocarboxamide + synthase" + /protein_id="ACL74770.1" + /db_xref="InterPro:IPR001636" + /translation="MLINNTNFIRLPLFVKGKVRNVYDLGDQLLIVVTDRISAFDVVF + DELIPNKGTVLNSISAFWFDFTKDVIGNHVITTDVSKYPKELSAFKDELQGRSMLVKK + VQMLPAECIVRGYLEGSGLKEYQKTGTVCGIKLPSGLKQADKLPEPIFTPSTKESEGH + DINVSFEVLCEKIGTEMAQKLKDASLKLYEKASKHAESKGLILADTKFEFGMLDGELV + VGDEMFTPDSSRFWARDEYQPGRAQKSFDKQYLREYLENITWDKQPPAPELPQEVIRK + TEEKYIEAYERITGKKFQGDKL" + gene 439082..439696 + /locus_tag="Ccel_0386" + CDS 439082..439696 + /locus_tag="Ccel_0386" + /inference="protein motif:TFAM:TIGR01855" + /note="TIGRFAM: imidazole glycerol phosphate synthase, + glutamine amidotransferase subunit; + PFAM: glutamine amidotransferase class-I; CobB/CobQ domain + protein glutamine amidotransferase; + KEGG: cth:Cthe_2886 imidazole glycerol phosphate synthase + subunit HisH" + /codon_start=1 + /transl_table=11 + /product="imidazole glycerol phosphate synthase, glutamine + amidotransferase subunit" + /protein_id="ACL74771.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR010139" + /db_xref="InterPro:IPR011698" + /db_xref="InterPro:IPR011702" + /translation="MIAIIDYGVGNLASVNKAFSFIEYDSIITSDHEEIFAADKVVLP + GVGAFADAMDSLDKTGMISVIKQIAQKGTPLLGICLGMQLLFDYSTEGGEKVEGLGLL + KGYVNHFPIDMGLKVPHIGWNSLDIRQENGIFSGIGPKSHVYFVHSYYLTAENQSDVA + AVCEYGIRFDAAVGRGNIMGTQFHPEKSGDVGLNILKNFAEINT" + gene 439708..440418 + /locus_tag="Ccel_0387" + CDS 439708..440418 + /locus_tag="Ccel_0387" + /inference="protein motif:TFAM:TIGR00007" + /note="TIGRFAM: phosphoribosylformimino-5-aminoimidazole + carboxamide ribotide isomerase; + PFAM: histidine biosynthesis protein; + KEGG: cth:Cthe_2887 + 1-(5-phosphoribosyl)-5-[(5- + phosphoribosylamino)methylideneamino] + imidazole-4-carboxamide isomerase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylformimino-5-aminoimidazole + carboxamide ribotide isomerase" + /protein_id="ACL74772.1" + /db_xref="InterPro:IPR006062" + /db_xref="InterPro:IPR006063" + /translation="MIIYPAIDIIDGKCVRLQQGSYSDVTVFGDSPVDMARKWESLGA + GYLHVVDLDGARSGKSENAEIIKQIAKTLKIPVQTGGGIRNLETVETYLSGGLSRIIL + GTSAVSNREMLISALKEYKGKIAVGIDAKDGKVAIHGWEKTSDYTAVEFAKEVESLGA + KTIIYTDISRDGMLKGPNLQAMKEMADSVSMDVIASGGVSRLKDIIDLKQTGVSGVIV + GKAIYTGNVDLKEAILAI" + gene 440468..441229 + /locus_tag="Ccel_0388" + CDS 440468..441229 + /locus_tag="Ccel_0388" + /inference="protein motif:TFAM:TIGR00735" + /note="TIGRFAM: imidazoleglycerol phosphate synthase, + cyclase subunit; + PFAM: histidine biosynthesis protein; + KEGG: cth:Cthe_2888 imidazole glycerol phosphate synthase + subunit HisF" + /codon_start=1 + /transl_table=11 + /product="imidazoleglycerol phosphate synthase, cyclase + subunit" + /protein_id="ACL74773.1" + /db_xref="InterPro:IPR004651" + /db_xref="InterPro:IPR006062" + /translation="MLTKRIIPCLDVHAGRVVKGVQFVNIIDAGDPVEAAAFYDKAGA + DELTFLDITASSDARSIMLDVVSRVAEQVFIPFTVGGGIRTAEDFRRILKAGADKVGV + NSAALKRPELISEAAWKFGSQCVVLAIDAKKRADGSGWDTYLNGGRVNTGKDAVEWAI + EAEKLGAGEILLTSMDKDGTKDGYDIELTRTVSENVKIPVIASGGAGKMEHFKDALVD + GKADAVLAASLFHFREMEIRDLKGYLKNNGIEIRL" + gene 441310..441945 + /locus_tag="Ccel_0389" + CDS 441310..441945 + /locus_tag="Ccel_0389" + /inference="protein motif:TFAM:TIGR03188" + /note="TIGRFAM: phosphoribosyl-ATP diphosphatase; + PFAM: phosphoribosyl-AMP cyclohydrolase; + phosphoribosyl-ATP pyrophosphohydrolase; + KEGG: cth:Cthe_2889 bifunctional phosphoribosyl-AMP + cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein" + /codon_start=1 + /transl_table=11 + /product="phosphoribosyl-ATP diphosphatase" + /protein_id="ACL74774.1" + /db_xref="InterPro:IPR002496" + /db_xref="InterPro:IPR008179" + /db_xref="InterPro:IPR010916" + /translation="MNNLKSSVKFDEKGLVPVVTQDTKTKEVLMVAYMNEEAFDKTLE + TGKVHYYSRSRSKLWLKGETSGHFQLVKSIKLDCDGDTILVEAEQIDVACHTGNKTCF + FRTMVDGEWKENTEEKPTAAILHEVYNVILDRTVHPKEGSYTNYLFTKGLDKILKKVG + EETAEVIIAAKNKSKEEIRYEVSDLMYHLMVLLVERGLTLEDIYGELKGRR" + gene 441946..443367 + /locus_tag="Ccel_0390" + CDS 441946..443367 + /locus_tag="Ccel_0390" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_0946 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74775.1" + /db_xref="InterPro:IPR013026" + /translation="MKNNLLSIDEYRNNPEFYFYKGLRCANKRNLNEAYKHLVRASEL + SPENMEYKFNIACFLSEMQRPREANRIFKDILLHYDPTMYDCYFGMGCNSFELGDMKK + AAEYFEKYIYFDSDGEFSEEVSEMIFYLKLYNDISGDNRFLRLSQINFKKAEKSLLNN + KTDHAVSELYRAIAFNPLNTEARNLLVLIMLEQQNYKRAASFVSTVLNIYSEDIWANT + LKIYNLYCTRKYSRVEKLLKILPFRRVHNRKDLLCIVTTLIVFNKIDEMILLLETYIV + EYNDLIIYLTLLLGYVSVKNYSKANQMIKNLLSFKTLNKDISDWLKKISRIMKENTVE + ISVLDEYKEIFGIIGETEDYMYSPTGYSKILENAFVPRQRASRRIPAKYNSVVKCTVL + NKEIMYVPDYEKEIIHLLCNIIKGTEELLPENEKDITALSAVVEYIYCKENFIEMGKE + ELIQKYGITSISFNRVLKKIKYK" + gene 443580..443864 + /locus_tag="Ccel_0391" + CDS 443580..443864 + /locus_tag="Ccel_0391" + /inference="protein motif:PFAM:PF00166" + /note="PFAM: chaperonin Cpn10; + KEGG: cth:Cthe_2891 co-chaperonin GroES" + /codon_start=1 + /transl_table=11 + /product="chaperonin Cpn10" + /protein_id="ACL74776.1" + /db_xref="InterPro:IPR001476" + /translation="MKIKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVG + PGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQGDILAIVE" + gene 443888..445519 + /locus_tag="Ccel_0392" + CDS 443888..445519 + /locus_tag="Ccel_0392" + /inference="protein motif:TFAM:TIGR02348" + /note="TIGRFAM: chaperonin GroEL; + PFAM: chaperonin Cpn60/TCP-1; + KEGG: cth:Cthe_2892 chaperonin GroEL" + /codon_start=1 + /transl_table=11 + /product="chaperonin GroEL" + /protein_id="ACL74777.1" + /db_xref="InterPro:IPR001844" + /db_xref="InterPro:IPR002423" + /db_xref="InterPro:IPR012723" + /translation="MAKEIKFGEEARRSLEKGVNQLADTVKVTLGPKGRNVVLDKKFG + SPLITNDGVTIAKEVELEDKFENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREG + MKNVAAGANPMILKKGLQKAVDTAVAGIKENSRKVKGKEDIARVATISANEELIGTLI + ADAMEKVTNDGVITVEESKTMGTNLEVVEGMQFDRGYLSAYMVTDTDKMEAVLDDPYI + LITDKKLTNIQDLLPILEEIVKQGKKLLIIAEDIEGEALTTLILNKLRGTFVCVAVKA + PGFGDRRKAMLQDIAILTGGEVITEELGLDLKETQITQLGKARQVIVQKENTIIVDGN + GSAEDIKSRINSIKTQIEDTTSDFDREKLQERLAKLSGGVAVIQVGAATETEMKEKKL + RIEDALAATRAAVEEGIVAGGGTAFINVIPEVAKLLESTSGDEKTGVQIILRALEEPV + RQIAENAGLEGSVIVEKIKTSEKGMGFDALNEKYIDMIEGGIVDPAKVTRSALQNAVS + VAAMVLTTESVVADKPEPEAPAVPAGMPGGMGGMY" + gene 445690..446193 + /locus_tag="Ccel_0393" + CDS 445690..446193 + /locus_tag="Ccel_0393" + /inference="similar to AA sequence:KEGG:TTE1989" + /note="KEGG: tte:TTE1989 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74778.1" + /translation="MDIFMEKIVKRRKTAMDSIIIAATIVVGLLLIVIVGSVSFLQSF + MPILLVAIGYLGYVLIRNRNVEYEYIVTNGDLDIDMIIAQRKRKRVFSGSCKDFEIIA + KMTSGQYNQSYDNIKNRLNAVTTMESNEVYFISTVKDGEKILVFFEPHPKMIESFKKY + IPRKVFE" + gene 446309..447811 + /locus_tag="Ccel_0394" + CDS 446309..447811 + /locus_tag="Ccel_0394" + /inference="protein motif:PFAM:PF00478" + /note="PFAM: CBS domain containing protein; IMP + dehydrogenase/GMP reductase; + KEGG: dsy:DSY2052 inositol-5-monophosphate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="IMP dehydrogenase/GMP reductase" + /protein_id="ACL74779.1" + /db_xref="InterPro:IPR000644" + /db_xref="InterPro:IPR001093" + /db_xref="InterPro:IPR015875" + /translation="MAFYYNEPSRTFSEYLLVPNLSTKECVPDNVILKTPVVKHKVGE + KSTLELNIPVVSAIMQSVSDQNMAIALAKCGGISFIYGSQSIESQAEMVRKVKKYKAG + FVVSDSNLRPDNKLRDVVAMKQKTGHSTIAITEDGTPTGKLLGIVTSRDYRLSRASLD + EEISTFMTPFSHLIYGNEKTTLKEANDLIWEHKLNCLPIIDSNQKLMYFVFRKDYDSH + KQNPNELLDKSKSLIVGAGINTRDYKERVAALVEAGVDIVCIDSSDGYSEWQSDTIKW + IKETYNGQVKVGAGNVVDREGFRYLVDAGADFIKVGIGGGSICITREQKGIGRGQASA + VIEVSSARDEYMKETGIYVPICSDGGIVHDYHMVLALAMGADFIMLGRYFARFDESPT + RKLKVGGNFVKEYWGEGSNRARNWQRYDMGGDAKLGFEEGVDSYVPYAGKLKDNLDTT + IYKIKSTMCNCGALSVSELQQKARITLVSATSIKEGGAHDVILKDKEISS" + gene 448093..448569 + /locus_tag="Ccel_0395" + CDS 448093..448569 + /locus_tag="Ccel_0395" + /inference="protein motif:TFAM:TIGR01462" + /note="TIGRFAM: transcription elongation factor GreA; + PFAM: transcription elongation factor GreA/GreB domain + protein; + KEGG: cth:Cthe_2897 transcription elongation factor GreA" + /codon_start=1 + /transl_table=11 + /product="transcription elongation factor GreA" + /protein_id="ACL74780.1" + /db_xref="InterPro:IPR001437" + /db_xref="InterPro:IPR006359" + /translation="MSAKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDI + SENSEYDEAKNEQAQVEGRIVQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDE + EVEYLIVGSTEANPLKSKISNESPVGAALIGHTKGETVEVQVPDGVLKFKILEISK" + gene 448698..450197 + /locus_tag="Ccel_0396" + CDS 448698..450197 + /locus_tag="Ccel_0396" + /inference="protein motif:TFAM:TIGR00499" + /note="TIGRFAM: lysyl-tRNA synthetase; + PFAM: tRNA synthetase class II (D K and N); nucleic acid + binding OB-fold tRNA/helicase-type; + KEGG: tpd:Teth39_0318 lysyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="lysyl-tRNA synthetase" + /protein_id="ACL74781.1" + /db_xref="InterPro:IPR002313" + /db_xref="InterPro:IPR004364" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR006195" + /translation="MSEENLQENQQNEEDLSEILRVRRAKLKDLQEKNSDPFKIVKYD + VTNSSQNIINNFDSLEGQNASIAGRLMSKRGMGKAGFCDLQDRDGRIQLYVRKDEVGD + EVYEMFKKYDIGDIVGVQGEIFKTHKGEISIKVKEITLLSKSLLPLPEKWHGLKDTDL + RYRQRYVDLIVNPEVKNTFILRSKIIKSIRKFLDDRGFLEVDTPLLNTIPGGAAARPF + ITHHNTLDIDMYLRIAPELYLKRLIVGGMEKVYEMGRMFRNEGMSVKHNPEFTMMEVY + EAYNDYKGMMELTENLVSTVAMETLGTTKIQYQGQEIDLTPPWNRMTMIEAVKEYTGI + DFDTIKTDEEAKAAAESKKVHVKEGMVRGEILNLMFEEFVESNLVQPTFIYDYPVEIS + PLTKRKPDCPELTERFEFFITGREMGNAYSELNDPIDQKERFVSQVKKRDSGDEEANM + MDEDYVTALEYGMPPTGGLGIGVDRLVILLTDSASIRDILLFPTMKPRD" + gene 450291..451202 + /locus_tag="Ccel_0397" + CDS 450291..451202 + /locus_tag="Ccel_0397" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tpd:Teth39_0253 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74782.1" + /translation="MKYTLKESRAIMEIPANSTKEDIEKKYDVILKKYRQMKIDGTLT + EEAQEEFQKKTDAYRILMGYEAEEPKEPKKETYVDKAFVKAGMDRKKVDNFFHYHKYH + ILVTIAVVIIIASTVYSVVTKVEPDITIGILGEVNEQATNTLKQKITNSLPEIKEVGS + ETVMLSDRINDPNSAAYIQKAMILFAASDTDVFLLSKYVFDRYASDGAFMALDDVVRD + LSIDVKSSEYLKLKVVEEWNQPQAPTEKRTVKSYSDSEPRLYGIDVTNSKFFKDVDVL + GPEKILAVRAEPEKLELILKLIKLFAK" + gene 451241..451558 + /locus_tag="Ccel_0398" + CDS 451241..451558 + /locus_tag="Ccel_0398" + /inference="protein motif:TFAM:TIGR00377" + /note="TIGRFAM: anti-anti-sigma factor; + PFAM: Sulfate transporter/antisigma-factor antagonist + STAS; + KEGG: cth:Cthe_2898 anti-sigma-factor antagonist" + /codon_start=1 + /transl_table=11 + /product="anti-sigma-factor antagonist" + /protein_id="ACL74783.1" + /db_xref="InterPro:IPR002645" + /db_xref="InterPro:IPR003658" + /translation="MEHSELSVQKILDGSKCKIVLSGEIDIYTSQRFKNELNEAVKTC + NDDLYIDCKELTYIDSTGLGILVGALKEVRKENNHIYICNLKDNIKKLFLITGLDKLF + KIE" + gene 451644..452030 + /locus_tag="Ccel_0399" + CDS 451644..452030 + /locus_tag="Ccel_0399" + /inference="similar to AA sequence:KEGG:Cthe_2899" + /note="KEGG: cth:Cthe_2899 putative anti-sigma regulatory + factor, serine/threonine protein kinase" + /codon_start=1 + /transl_table=11 + /product="putative anti-sigma regulatory factor, + serine/threonine protein kinase" + /protein_id="ACL74784.1" + /translation="MESIINDNVTLILPAKSEYVSTARLTASSVATRVGFNIDEVEDI + KVSVSEVCNIILSRTDKKISQYRISFDIIANNLKITFMAENSTLDCFEESIENEYGLY + IMKALMDSVELCNDDHSIVMTKKIGV" + gene 452033..452782 + /locus_tag="Ccel_0400" + CDS 452033..452782 + /locus_tag="Ccel_0400" + /inference="protein motif:TFAM:TIGR02980" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; RNA polymerase sigma-70 factor, sigma-B/F/G + subfamily; + PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 + domain protein; sigma-70 region 4 domain protein; + KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, Sig B/F/G + subfamily" + /protein_id="ACL74785.1" + /db_xref="InterPro:IPR007624" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR014284" + /db_xref="InterPro:IPR014322" + /translation="MENKTQNTLNYDEVQLFSQYISTGNLEYRNEIVSNYLSLAEYLS + KKFLNRGVDFDDIYQVACLALINAVERFSPDKGVKFISFATPTILGEIKRFFRDKSTT + IKIPRRIYESRQGVNKARDELTQKLSRVPRADEIAEYMGIPVETVLEIIEAGSSTIVK + SLDQTINQDNDAELGDTLGYDEKTYEMIDNKDFLEKVLISFNDVERQFVTYRYIQNKT + QKQIAEILGVSQMYVSRMERKILDKFRKYLK" + gene 452853..453287 + /locus_tag="Ccel_0401" + CDS 452853..453287 + /locus_tag="Ccel_0401" + /inference="similar to AA sequence:KEGG:Cthe_2901" + /note="KEGG: cth:Cthe_2901 putative anti-sigma regulatory + factor, serine/threonine protein kinase" + /codon_start=1 + /transl_table=11 + /product="putative anti-sigma regulatory factor, + serine/threonine protein kinase" + /protein_id="ACL74786.1" + /translation="MRAITYIINDPVNVSDIVTLILDYITLGNSVSEDTLFEIKVILN + ELIVNALQHGNKSNHNKHTYVTFKLIDDDYLYVSVMDEGSGFNYSKFSLVKDLDCTNS + LYCDHGRGLVIVRQLCDKIKFNKCGNKVSIIKNLHLQQPKNI" + gene 453791..455431 + /locus_tag="Ccel_R0007" + rRNA 453791..455431 + /locus_tag="Ccel_R0007" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 455609..455684 + /locus_tag="Ccel_R0008" + /note="tRNA-Ala1" + tRNA 455609..455684 + /locus_tag="Ccel_R0008" + /product="tRNA-Ala" + gene 456205..459117 + /locus_tag="Ccel_R0009" + rRNA 456205..459117 + /locus_tag="Ccel_R0009" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 459369..459484 + /locus_tag="Ccel_R0010" + rRNA 459369..459484 + /locus_tag="Ccel_R0010" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 459490..459565 + /locus_tag="Ccel_R0011" + /note="tRNA-Asn1" + tRNA 459490..459565 + /locus_tag="Ccel_R0011" + /product="tRNA-Asn" + gene 460175..461293 + /locus_tag="Ccel_0402" + CDS 460175..461293 + /locus_tag="Ccel_0402" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bpu:BPUM_3575 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74787.1" + /translation="MKTILRTIVSIFMVAVLVSSSLTAFAESGDSANTANINIADVNI + KSHVNIDYSRPAIKLKANKVTKAAKAVSGVSAFLTSNVVSPTVFLQNNPRLIQNGILT + AENNTNYIYFTVTKDTFIWAKLASSNSDYTISLYKIDDTTGQALPTDIVENSNSIIAN + SGLEQGDYLFLISSNGSVGDNYDLQINATNPAGEFSSINTITPSLQQLVISYTNQEVY + ANGIYVFSWDSAASNRHLNWRRDVMAVKELVTETKKMILENVKVRTISAPVTYTSQYA + SSDNAILLYLNEGTAYTYYETITENANPLNYSKSFVDPNGKITPRNLDSSDFVNATHI + LVLDLNTGKPIDFFSSLNYFYNDKSVDREDSPKITYNQ" + gene 461451..461642 + /locus_tag="Ccel_0403" + /pseudo + gene 462382..462588 + /locus_tag="Ccel_0404" + CDS 462382..462588 + /locus_tag="Ccel_0404" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74788.1" + /translation="MSELVKFEVKKLPRIKLVGKELRYNMEAHMKGDNRMPAFWDKCF + ANEIFLLLEKQTEFVYDSAYVGVI" + gene complement(462779..463928) + /locus_tag="Ccel_0405" + /note="ribosomal slippage" + CDS complement(join(462779..463648,463650..463928)) + /locus_tag="Ccel_0405" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL74789.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSACRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 463988..464308 + /locus_tag="Ccel_0406" + CDS 463988..464308 + /locus_tag="Ccel_0406" + /inference="similar to AA sequence:KEGG:DSY1945" + /note="KEGG: dsy:DSY1945 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74790.1" + /translation="MTDWDKGDGDFSYIVGMLMKDGVSVPEGYYYKDIEETDVAIGWI + KGRDTADVHSSAHPLTEEAIKENGYKCDKMKWCMELYNCPRYSTPHENGDITLDYYIP + INDN" + gene 464657..465013 + /locus_tag="Ccel_0407" + CDS 464657..465013 + /locus_tag="Ccel_0407" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74791.1" + /translation="MLNKNNKKMFLIMLIPLYLLISISIFGMSIGGINWISALEYSLL + FILAAWSLSRNDSLIINLAGFLIYAIIGGNSIYSTLTRTTRIGPWTFSIYTGVALILF + GLLAFSYNTVRVVRKR" + gene 465221..466162 + /locus_tag="Ccel_0408" + CDS 465221..466162 + /locus_tag="Ccel_0408" + /inference="similar to AA sequence:KEGG:Exig_0300" + /note="KEGG: esi:Exig_0300 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74792.1" + /translation="MRNYIIAFLVIIALLTGCSVENLPERNESTSTLTKNSASLTSAS + PSENKTNIPGKATVQEPSKPIESAPTEGKYKEIKVAGGDTSGTRKPMVVVDIGYGSRV + YWAYTNKFGQLIRVTAKEIILQDAKTEPVLKNGRYYPDEAKVPGTERADLDQGHVIAD + SLGGVSNAYNITPQNSVLNRHGDQAYMEKNIRDAGGCTNFEAIITYPNTKTQIPSHYR + YTYTIKGNVIKDDFANVDPDEANKSLNEKPKETPKTTPKPSTTDKNHNIDSIDKNHNG + KVSIAEAKAAGFKMPITKDHWLYKYMDDRDGDGMVGE" + gene 466412..467458 + /locus_tag="Ccel_0409" + CDS 466412..467458 + /locus_tag="Ccel_0409" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74793.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(467726..468184) + /locus_tag="Ccel_0410" + CDS complement(467726..468184) + /locus_tag="Ccel_0410" + /inference="protein motif:PFAM:PF01047" + /note="PFAM: regulatory protein MarR; + SMART: iron dependent repressor; + KEGG: cbk:CLL_A1371 transcriptional regulator, MarR + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MarR family" + /protein_id="ACL74794.1" + /db_xref="InterPro:IPR000835" + /db_xref="InterPro:IPR001367" + /translation="MNEQPNIDIRRFVETFEKLARAERRKQSLFGLKQSEVRVLLCIE + QLSHENKQIITVSEISKKMLVTSPTVTELIKSLSTNGYIERCVDPQDKRVSDIKLTDK + GEKIVQKLITYFTSLFSGLIEKIGVEQSETLLDLLDQVCLYLNETNLESY" + gene complement(468358..469953) + /locus_tag="Ccel_0411" + CDS complement(468358..469953) + /locus_tag="Ccel_0411" + /inference="protein motif:TFAM:TIGR00711" + /note="TIGRFAM: drug resistance transporter, EmrB/QacA + subfamily; + PFAM: major facilitator superfamily MFS_1; + KEGG: deh:cbdb_A1621 major facilitator family transporter" + /codon_start=1 + /transl_table=11 + /product="drug resistance transporter, EmrB/QacA + subfamily" + /protein_id="ACL74795.1" + /db_xref="InterPro:IPR001411" + /db_xref="InterPro:IPR001958" + /db_xref="InterPro:IPR004638" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MHQLTQKRKTTVMIALMATMFFAAINQTIISAALPKVIAQLGGM + DYYSWVITGYMLTSTISTVIFGKLSDIYGRKIFLLSGIIIFLIGSFLTGLSANIFQMI + AFRGIQGIGGGILMSISLTAVGDLYPPQERAKWTGVMMSIFGISSILGPVLGGVMVDY + VAWKWLFWIFLPLGVIALIMIWSLFPKLSGNSSESIDYLGSIFLALSITSLLLGFSWA + GTKYAWALPQSLGLFAATLVGILVLILIERNAKSPVMPLSMFKNKGVTISFVASFVMS + GGMMGAMSYIPFFIQGVKGHSATTSGLLNIPMSLMMIIFSTLVGRWMSKYGNYRLFAV + LGLGIMSASMIIMANMNNIVWAAISLIIFGVGLGFGMTVFTTTAQNSAPTSQLGVVTA + SCTLFRNLGGTIFIAIFGSIMNTSMARNMEKVMSSGSGIDLTKLDVETAEKFKAMANP + QLLLDNTKLEAIQASMPEQVQLLFSKVMDLVRTVMGDALTSVFYIGALLLLVGVVLSL + FLKVQTADKDNNEEFEEKEEAAA" + gene complement(470192..470470) + /locus_tag="Ccel_0412" + CDS complement(470192..470470) + /locus_tag="Ccel_0412" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74796.1" + /translation="MPYFGKSNKLANILICCSVILFVIAAVVFVRGSVLDQVFEFSNG + NYISSGIYFTIFMLLALFTFIIGIALKCVVKDAKYEFTNIKSEQRGES" + gene 470718..471698 + /locus_tag="Ccel_0413" + CDS 470718..471698 + /locus_tag="Ccel_0413" + /inference="protein motif:PFAM:PF00291" + /note="PFAM: Pyridoxal-5'-phosphate-dependent protein beta + subunit; + KEGG: ypm:YP_3381 pyridoxal-phosphate dependent protein" + /codon_start=1 + /transl_table=11 + /product="Pyridoxal-5'-phosphate-dependent protein beta + subunit" + /protein_id="ACL74797.1" + /db_xref="InterPro:IPR001926" + /translation="MSLKEKISEVTFSNEVGNTKMVKIANLLKNSSSNIYAKCEYLNP + SGSHKDRTFNYIIEQLEKRGEISPGMTLVDCSTGNGGGALARCGKLKGYKIIVFMPEG + MTEERISQIKSFDAEIIETPREKFLNGSVEAAGEYARIHENCYFLDQASNPLNREAWD + NCGKEIVKSFDSLGEKVDYFICAIGTGGTFSGIAKQLKIYYPDIITVGIEVDKSAPLF + SKRHNKEFKHKHHNMMGLGAGVLSSNTDENLVDIIETVSGEDSWTMMKKVIQDENLQI + GPTSGANILMSLKYAKEYGSKNIVTVLFDSAWKYYSRWDGVYPEYQNLNL" + gene 471712..472275 + /locus_tag="Ccel_0414" + CDS 471712..472275 + /locus_tag="Ccel_0414" + /inference="protein motif:PFAM:PF00156" + /note="PFAM: phosphoribosyltransferase; + KEGG: ypg:YpAngola_A4140 putative phosphoribosyl + transferase protein" + /codon_start=1 + /transl_table=11 + /product="phosphoribosyltransferase" + /protein_id="ACL74798.1" + /db_xref="InterPro:IPR000836" + /translation="MLLKEIYENAKVVSSGKHFTTVNEFTDQIPALRPRVLWEAALKI + SQICDFKADKIVTEEDKGTPLATVVSLISGLPMAIARWYNYSLEEESQIAVNIDSEYF + NGKLFLNGVNKKDKVIIIDDTLSTGGTIVSLVKAIRESGAEVVDVVCVIEKEGYGGRE + RVLESTGIEVKTIHKILVNQNGVKVIS" + gene 472332..473009 + /locus_tag="Ccel_0415" + CDS 472332..473009 + /locus_tag="Ccel_0415" + /inference="protein motif:PFAM:PF01168" + /note="PFAM: alanine racemase domain protein; + KEGG: bcs:BCAN_A1846 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="alanine racemase domain protein" + /protein_id="ACL74799.1" + /db_xref="InterPro:IPR001608" + /db_xref="InterPro:IPR011078" + /translation="MNQESILNQYKLIVQNIEKSAEKVKRDAKNINLLAVSKFHEVNK + IIPLLEIGHCHFGESRVQEAKSKWIDLKKLYPQTILHLIGPLQTNKVKDAIQLFDIIE + TLDREKLAEKIADELRKTGKNPKIFIQVNIGMEVQKSGIAPEELKMFLNKCRNDYALD + IKGLMCIPPAGEDSVKYFLDLYNLAQKNGLEEISMGMSDDYQEAILSGATQVRIGSSL + FGKRNYT" + gene 473086..475266 + /locus_tag="Ccel_0416" + CDS 473086..475266 + /locus_tag="Ccel_0416" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: phosphoribosylglycinamide synthetase; protein + of unknown function DUF6 transmembrane; + KEGG: ypi:YpsIP31758_4090 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL74800.1" + /db_xref="InterPro:IPR000115" + /db_xref="InterPro:IPR000620" + /db_xref="InterPro:IPR011761" + /translation="MNNKHFTGVFYILLFCILSAFLDVYVGNISQNIDPILLLFCNFL + ILTTFFAITHKRTEIPLIKETINSWKPILMLNIAAAASWIGLFYSLKYLEPAVVGIVS + AAVGPVITIVLNPFFDSGNRITKLEKTIATCIVIVISVLLYFTYGGISGIGEVSSINF + IFGSICVIMCGIGMAATTLVTKKLMNERWHPSRILVSRSYIMLLISLFIILTKINQLQ + FSFSLIPAVLLIAFIGNIIPLYIYQLGVQRVEPFKISIMLLFLPIFTFILQLFDQRLE + FSFPTLVCIIITIGFILLELIIKPKRTELKTVPSKNCAIVDAYSSGRYLAAEFKNLGY + KVFHIQSVKNTPAFFKSSFIEEDFFDNIIIDNDLDKKIEQIKQLNPEFIFAGCESGVL + TADMINNKLNLTMCNDYKLSKHRRNKFMMIDMLHRNGISAPKQLKSSDLNEIKEWINE + HNAWPVVLKPLESAGSDNIWFCYDFNIVGKAFEKIINDVNKMGIKNESVLVQEFLDGT + EYVVNTVSSNGEHVISEIVKYKKVKTEDNGILYDIDELQSSDSEIYSIMSQYINRVLN + VLGVKYGPCHAEVMLTENKIPKLVEIGSRTDGILRPDVSSVTTGLGQIKLTALAYADT + EEFKKYLTCPYLIKNNTINVALISHVEGTLQSLPHIEFIKSLPSFFLINLSVAVGEKI + DKTKDVFSQPGTIYLVHESMDVIMQDYYKIRYYEKNGLYKVLSA" + gene 475628..478174 + /locus_tag="Ccel_0417" + CDS 475628..478174 + /locus_tag="Ccel_0417" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL74801.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKYFKKVCITLAAFLISTGFAVGIGTQSVNAASTTIPCRQLEQL + DRGIVAVNQGNGKVYVSWRLLGTEPSNTAFNLYRKTAGGTEVKLNSSPITSCTNYVDN + GVDTTKDNTYTVRTVLNGIENNESEQYTLAANTSVRQYIPIKLKPLPTGYYTMHVNVG + DLDGDGKYDYIVKRMNDDRSPVQVEAYKSDGTFLWRIDLGPNIETYNTAMTSPLVVSD + LNSDGKAEVLIKTGESTRFGDGTLIGDTNNDGITNYCNTSSTSYQVLSGPEFISVIDG + MTGKELSRADFIARGQVTDWGDNYGNRASFIFMTVAYLDGIHPSVVMSRGPGNVMKVE + AWDFKDGKLSQRWKWDARNQVLPSGKNFPDFHAIRAVDVDKDGKDEISWGGSMLNDDG + KLLYATELTHGDRFVIGDIDPDRDGLECYAIQQNNPSLLGAALYDAGNGTMIKKMYMS + AVGDVGRGDCADIDPNYRGMECWSTLENLYNCKGGVIGSEKSFPFLSIWWDGDLLREF + FIGVDSNGFNAAINKWNYTTKTSNRLYSVYQEGVKSTYAGRPPFYGDIMGDWREEVIL + ETTDNTELRIYTTNIPTNYRIYTLMHNPAYRNSVDVKGYLSSVYPDYYLGEGMSTPPT + PNIYTGDGELIKSLRVNDSNNAADWCIQSNLQVGDTVYGDRTYKYTKIPQSLTGTEWI + RTACDSKSYLDEEANFTAKKDISVYIGLDSRITSIPAWLSDWTKTGETLSDDSSITFN + LYKKDFTSGSVVRLGTNGGSSSFVNYTVIVKPNTAPAFLYGDVNGDGIVDVLDYSTMR + SYLLQITNSMPSAYWQMAGDLNSDGAIDSMDYLYLKMYLLGTINSLPVSP" + gene complement(478396..479592) + /locus_tag="Ccel_0418" + CDS complement(478396..479592) + /locus_tag="Ccel_0418" + /inference="protein motif:PFAM:PF00872" + /note="PFAM: transposase mutator type; + KEGG: glo:Glov_3450 transposase mutator type" + /codon_start=1 + /transl_table=11 + /product="transposase mutator type" + /protein_id="ACL74802.1" + /db_xref="InterPro:IPR001207" + /translation="MSEKIIQLNEGIIKEELKNLVRSSVEETLNNLLDKEAEDLTNAA + KYERTQERQGYRSGHYTRSLQTTSGEVTLRVPKLKGVPFETAIIERYRRRESSVEEAL + IEMYLAGVSVRRVEDITEALWGTKVSPGTISELNKKAYVHIENWRNRPLQDGKYPYVY + VDGIYLKRNWGGEYENVSILVAIAVNQEGYREVIGAREGMKEDKASWKEFLQWLKGRG + LDGVKLIVGDKCLGMLESVNEVFPEAKYQRCTVHFYRNIFSVTPRSKMKLVAKMLKAI + HAQESKASAREKAKLVAEELKSMKLREAAKKLEDGIEETLTYMEFPYEHWTRIRTNNT + IERLNREIRRRTRVVGTFPDGNSALMLVCARLRHVAGTQWGSKKYLNMKHLENMDSDE + SDFIAG" + gene 479706..480701 + /locus_tag="Ccel_0419" + CDS 479706..480701 + /locus_tag="Ccel_0419" + /inference="protein motif:PFAM:PF03690" + /note="PFAM: metal-dependent protein hydrolase; + KEGG: amt:Amet_0463 metal-dependent protein hydrolase" + /codon_start=1 + /transl_table=11 + /product="metal-dependent protein hydrolase" + /protein_id="ACL74803.1" + /db_xref="InterPro:IPR003226" + /translation="MDTIKEFKKVGTHSGRFHADEVMATAILKQVFEIKLTRTRDPEI + LEKQDLIYDIGNGEFDHHQLEKEYRDNGTPYAACGLIWRKFGRQAILSKHPEVSENEI + ESIFRYVDAVLIEGIDAADNGIRTTENIIPTMCISAIIGGYNPTWDSPESVDAAFSDA + VGFAEDILENLIDQKVSTLKARTFVIQAYNNRKRPELLILDNSYPWERTLKEIDINKE + VLFVIYPKEEGFYIQTVREYGEVRRDRKSLPRQWAGKREEELCNIIGIKDAVFCHSSR + FIAKAGSFESILKMADIAISMPETEIENRRADRSVFDILKLILKNKLVIKIRRNR" + gene complement(480762..496747) + /locus_tag="Ccel_0420" + /pseudo + gene complement(481263..481676) + /locus_tag="Ccel_0421" + CDS complement(481263..481676) + /locus_tag="Ccel_0421" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74804.1" + /translation="MNQMVTLLQEIVHTAVKTQQTLKTIVLYIEPSSIQHIDHLDLLL + NKIKISSISSEHDIIADTDEMSIRYSIQTLFSCMHSIDEISNTLKLTTFNTLPEDLTR + RLDKNMQSLRNTFLQLNSCFTQTFGEDKSYLANIL" + gene complement(481847..483079) + /locus_tag="Ccel_0422" + CDS complement(481847..483079) + /locus_tag="Ccel_0422" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: aoe:Clos_0840 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL74805.1" + /db_xref="InterPro:IPR011701" + /translation="MNSIVHTEQNLHNDEKFVLFLFSQGVSSFGDAFQFIAATSLIVN + ITGSGFSAAFGLICSPILSILFSALAGYISDNKKDKTLLVLIDLIRGLIVLIFIYKHT + ISEIYSLIIVLSILDIFYNPPKRKFTTRILKNSQLMKGNSLLTGLTGGVYIVAPILAG + ILINNYGTDIAFFINSISFFISAFCIIIIKCKINKHDVTSKIKMSFKNTTDSLFEGIA + YCLNTYTLRKTIFIGTVICFATTSVNIAFYPFAFNTLKVSNKIWGIMMSIFYGANLLA + MPISLVGCFKIKTYYKIIIPLSLMGISVIWFSYGSTSEISLILFLQLLEGTILSYLSI + ILLSQIQIKSKNDFLGRIVGINDFINNLGKVLGIGCTYTLLRMTSSYAVFLLCAIITS + AYAVYTFMSTKIHRLEEL" + gene complement(483154..484098) + /locus_tag="Ccel_0423" + CDS complement(483154..484098) + /locus_tag="Ccel_0423" + /inference="protein motif:PFAM:PF04294" + /note="PFAM: VanW family protein; + KEGG: aoe:Clos_0839 VanW family protein" + /codon_start=1 + /transl_table=11 + /product="VanW family protein" + /protein_id="ACL74806.1" + /db_xref="InterPro:IPR007391" + /translation="MLYKRYFKPAIIFMFVFTYTILPFATGESLSANDVNKDHLQTSI + KQCENNGNGQEEGLKNPSKSGTTFYVPWEGSENFLSCQSKNGTPIMMVAYQTVLRDPL + PGEEENVHLAARLLAGTVVKPGEVFSQNNKIGPYVIARGFKKGPTYIGTKLTTTIGGG + VCKMASTLYNVAILSNLPVVERHAHSMPVPYVPYGQDATVSYGNKDLKFKNDTSSPIM + IWAQGVDNILYVAFYSSTKPPEVEWHHEMLKLIKADKVYKMSSTLPKGREKLLMEGMD + GAIVKSWVTVKNPDGTVIKRDLRKSYYNPMPHVYEKGK" + gene 484286..484699 + /locus_tag="Ccel_0424" + CDS 484286..484699 + /locus_tag="Ccel_0424" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: protein of unknown function DUF6 + transmembrane; + KEGG: swo:Swol_1359 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL74807.1" + /db_xref="InterPro:IPR000620" + /translation="MVFLLAFIGMTCWGIAPLFVKLGLKDVNPLMGLAVRTTFTLIVI + SSIMFINGSIYSLKNISSTALILLAVEAIFATLIGDLAYFAAIKRGAVSSVTIIMASS + PLITIICSILFLDEQITFSRITGAVLVIIGIIIAI" + gene complement(484709..486175) + /locus_tag="Ccel_0425" + CDS complement(484709..486175) + /locus_tag="Ccel_0425" + /inference="protein motif:PFAM:PF01276" + /note="PFAM: aminotransferase class V; Orn/Lys/Arg + decarboxylase major region; Orn/Lys/Arg decarboxylase + domain protein; + KEGG: cth:Cthe_1918 arginine decarboxylase" + /codon_start=1 + /transl_table=11 + /product="Orn/Lys/Arg decarboxylase major region" + /protein_id="ACL74808.1" + /db_xref="InterPro:IPR000192" + /db_xref="InterPro:IPR000310" + /db_xref="InterPro:IPR008286" + /translation="MEETSQNSTPLFDAVKRYVDSDVTPFHVPGHKHGRGISELRKYV + GKRILEMDVNGMEDLDYANNPTGVISQSQKLLADAFGADNAYFLVNGTTSGVQAMIMS + VCEPGSKIIIPRNAHKSTIGGIILSGAIPVYVQPVINKQLGIAMGVTTKSIEHAIKNN + PHAKAVFIINPSYYGIASDLKSIVSLAHHHDMAVLVDEAHGAHMYFHCDFPMTAMQAG + ADISAVSIHKTAGSLTQSSALLLKSNLIDPNTVKKVMSLTYTSSASYLLMCSIDIARK + QLAVNGRDILEKVLKLSRYAREEINKIRGLYAFGNELIGTPGCFAFDETKLSINIAGL + GYTGYQLENKLRKEYNIQMELSDICNILAIISLGDRKQDLDLFINSLKDISAKAKPNT + YPYQNALPDSPEMVVCPREAFYSPKKTVSLENSIGEISGEMIMVYPPGIPLVCMGERI + TKDIIEYIKVLKNERCQIQGTADPYVNYVKVLGSNFIT" + gene 486550..486705 + /locus_tag="Ccel_0426" + CDS 486550..486705 + /locus_tag="Ccel_0426" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74809.1" + /translation="MTIKNNRIELTSEESNIFTRQFKIGVIRQLYKENLLTAEQYDQV + IKAINSY" + gene 486775..488379 + /locus_tag="Ccel_0427" + CDS 486775..488379 + /locus_tag="Ccel_0427" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: spj:MGAS2096_Spy1103 site-specific recombinase" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL74810.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MKIKVGAYCRVSTEKDDQVNSLQSQKKYFEEYIRNRPDWEFVDI + YADEGISGTQAENRIEFQRMISDAKYKRLDLILTKEISRFARNTKISIDYTRMLKELG + VGVIFISDNINTLDGDGELRLTIMSAIAQDESRKTSERVKWGQKRRMEQGVVFGRELF + GYNLYKGTLTVNEEEAEIVRLIFRKYTIEGKGTHVIARELYEDNIQSKSYKNRWSNTV + ILRLLKNEKYVGDLAQKKTITPNYLNHKKKYNRGEEEIVYIKNHHTPIIPRELWDATQ + EQIIQRSASKEQKSKYSNRYWCSGKLLCGECGSNFVGRSKKLENGQVYKVWKCSRAKS + YGSLKIDVNGNQVGCNNKSINHIVLGKIVKNVLYSINSNKEKIISELVSEIRKLNKLT + NIKSTDSFTRKIKDLNRKKQEVINLMIEGSISKDDMVLMNKRYDLEINKVKTDIKNIE + EINLINSRNADKLHIYLDRINSLVNQREENDSDEVFKLTVKKVILYKNNILELYFTCI + PEPIKLKYKSKGKNGNYSVEYSFMDN" + gene complement(488508..491300) + /locus_tag="Ccel_0428" + CDS complement(488508..491300) + /locus_tag="Ccel_0428" + /inference="protein motif:PFAM:PF00150" + /note="PFAM: S-layer domain protein; glycoside hydrolase + family 5; Carbohydrate binding family 17/28; + KEGG: csc:Csac_0678 cellulase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 5" + /protein_id="ACL74811.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR005086" + /translation="MFRNINKRILAFVIVVAMLMSFIPTMAFAAEPDSSHLITSQAEK + PSTAGALQILDKNGTKTLCDKDGNPIQLRGMSTHGLQWYPEIINDNAFAALSNDWGSN + VIRIAMYVAEGGYSKDPETIKKRVIDGIDLAIANDMYAMLDWHVLTPGDPNADIYKGA + MDFFKEISQKYPNNPHIIYELANEPSPNDPGVTNDAAGWAKVKSYAEPIIKMLRDSGN + KNLVIVGSPNWSQRPDLAADNPINDNNTIYTVHFYSGTHKPSADSSDRGNVMSNARYA + LEHGVAVFASEWGTSEASGNNGPYLKEADEWLEFLNANNISWCNWSLTNKNETSGSFI + PFISGKSDATSLDPGDDQVWSPKELSVSGEYARARIKGIKYEPIDRAEKEEFTTNVWD + FNDGTTQGFGINGDSPVKADSITIANEKNTLKITGLNTSKDLTEGNYWANVRLSADGT + SNKPNILGAEKLTMDIITAAPATVSIAAIPQNSTHGWANPTRAIAVKPADFVKQEDGT + YKAVLTITPADSPNFDSIAKDSKDSTMTNIILFVGADTNVISLDNITVSGNRTTVEAP + VEHAPIGKATLPSIFEDSTRQGWAWDAASGVQSALTIKDANGSKAISWEVKYPEVKPV + DGWASAPRIMLSNINATRGNNKYLAFDFYLKPTQASKGSLSINLAFAPPTLGYWAQAS + VNFDIPLTKLSKMKKTKDGLYHFQVKYDLDKVNDGKVLAADTVLRDITIVVADGNSDF + AGTMYVDNVRFENDSKSELNNAIAMLVSKGIIKSSDVKKINLNKSISRGEFLNWLVKT + LDLNAKYSVNFSDVHKKDSYYNPVGIAKALGITNGVGHNKFNPNKAISREDMLVLTFK + ALKLVNKNLVKGNADDLKQFTDASKVSRNSVESISTIVKNGFYSGDAKKLNLKASVSK + AETALMLYKIYTSLHK" + gene 492172..494757 + /locus_tag="Ccel_0429" + CDS 492172..494757 + /locus_tag="Ccel_0429" + /inference="protein motif:PFAM:PF00801" + /note="PFAM: PKD domain containing protein; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0624 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="PKD domain containing protein" + /protein_id="ACL74812.1" + /db_xref="InterPro:IPR000601" + /db_xref="InterPro:IPR002105" + /translation="MAKVTKMRKVGALVVGSALLFTTMVPTSIFSAAASDAINVSIDT + TAERAAISPYIYGGNWEFNNAKLTAKRFGGNRTTGYNWENNYSNAGSDWQQSSDTYML + TSNKIPEDKWSEPGVVITDFHDKNLAAGEPYSLVTLQAAGYVSADANGTVAEDEVAPS + ERWKEVKFKKDAPLSLTPDTTDNYVYMDELVNLLVNKYGSASTATGIKGYAIDNEPAL + WSGTHPRMHPNNATCAEVIDKNINLAKTVKGVDPSAETFGLVAYGFAAYNDFQSATDW + KDLKGNYTWFLDYYLDSMKKASTEAGTRLIDALDLHWYPEAKGGGQRICFGEDPTNIL + CNKARLQAARTLWDPTYKEDSWIAQWCSFGLPLIPKVQESIDKYNPGTKLAFTEYSYG + ADNHITGGIAEADVLGVFGKYGVYLATVWGGGSYTAAGVNIYTNYDGNGSKYGDTKVK + AETSDVENSSVYASVDSKDDSKLHVILINKNYDSPMTVNFGINSDKQYTSGRVWSFDR + SSANITEKDAIDAISGNKLTYTIPALTVCHIVLDSSAQTTLYGDANHDETVDAIDYAY + FKKILLNPDSEYDKTCDLNLDNAVDAVDFGILKQYLLGKIQSLPYKTITENKPPVAAF + TVSPKEAFTGDNINFDATASTDPDGNVHIYSWDFGDGTEGSGANITHKYKAPGTYTIK + LTAFDEKGLSNSVTDTVTITSATGDNADVNFEDGELNGFITNDATITTLSVTSDKAFQ + GNKSLKWDAVGSKDGKVDAEINSSVHVLKPGQTMTFRIWIPEGAPIKSIQPYYMPHNA + DWTAAEWNSSWKGYDMVKKGDWNEFTVTLPLTTDVTLTECQFGIQVETSAEGNFTMYV + DSIDW" + gene 494963..496570 + /locus_tag="Ccel_0430" + CDS 494963..496570 + /locus_tag="Ccel_0430" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: pth:PTH_0181 site-specific recombinases" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL74813.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MEYIPPLVIANNFEQYNDIRNSIGEVGLEVGGYIRISTKKDSQI + TSIENQKKYIMEWASVNGYKIVDFYIDMKTGAYSYLRQEMVRMKNDISSGKIKGIVSK + EISRTSRDILDIIELKRSLANQGAFFISIKEGYDSRTDDDEFLLVIHAGLAQKERKVT + GSRVKITQMIKAKEGKTNVPTPALGYKLSPDGQHIIINPATAEIYQLIVKKFLEGWGR + LKICKYLNSQGIRTNRGNASWSTNSIYAILTNPVYLGITMYNITLTVRDDTGKAKRMV + RPRDQWIVKENTHQPLITKEKFERIQQLIQDKKQKELKEWSCTKKYLLSGLVYCGSCG + SKLYGGRFPKKTAKLKIESERTPKDYYYYYFDRKTSGVCRNSKANFHMDIVEQKVIEK + VKEILLSYDQLDEIINKKHYLFDTRYIKEKKENERLRDRLQTVNSAIRREQSAYEADV + ITLDEYKTRLDELRRQKLSLDEKLEKINSTPAQSGSLEVANKLKETIRSLHNLEQDFQ + YEIIRKLINKIYIKDNYSLEFEFTFSD" + gene complement(496754..497023) + /locus_tag="Ccel_0431" + CDS complement(496754..497023) + /locus_tag="Ccel_0431" + /inference="similar to AA sequence:KEGG:CD0597" + /note="KEGG: cdf:CD0597 putative spore-coat protein" + /codon_start=1 + /transl_table=11 + /product="putative spore-coat protein" + /protein_id="ACL74814.1" + /translation="MKPMNEREALLWKVQAYEFACIEVGLFLNTNPNDKTALAYFKQY + RDMKHQLESEFTKRFGPLTAGHMDNDLSTWRWIENPWPWEIGREV" + gene complement(497157..497366) + /locus_tag="Ccel_0432" + CDS complement(497157..497366) + /locus_tag="Ccel_0432" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tte:TTE1799 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74815.1" + /translation="MDDLVNEYNYQERDKSAIKPFNPSKIALAMAFVPSQLWERPYDV + NEGLDRGTLFPSLDKPFLGGGNRYE" + gene 497558..498499 + /locus_tag="Ccel_0433" + CDS 497558..498499 + /locus_tag="Ccel_0433" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: afl:Aflv_0291 uncharacterized conserved two + domain fusion protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74816.1" + /translation="MKNSAKKVLTVLVFITCVVALVIILVFASKGNTPGIIDSNNSTK + INASGQVYNADYLFENKTPYVGNNSKVLHIIDNLQFGNYRGEVSLQTEKIPYGVTVNY + DFQNLVKEDYQKAKIENEERLKLAFKRNAAMMFCLIENLDKITFVCRTVKGTAEYGFT + REEIQKDYNEDLKEYSKDKNKFGRFAITLNNDNLIIHSMKKYSPTMSSVVGLKIMSTY + EGKADNIRYTATDGKLILFDGNSAGKQGNTLTVEKNTPIFWSPLSGDDTSFKADKIVV + KVEVLNQGIKIAEQNLNIKKEGITYIIEENINVIADI" + gene 498617..505965 + /locus_tag="Ccel_0434" + /pseudo + gene complement(498993..499763) + /locus_tag="Ccel_0435" + CDS complement(498993..499763) + /locus_tag="Ccel_0435" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_2804 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74817.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MFIDIKNVSKEYLQNNSIFKALDHVSLQIKKGEFICLLGPSGCG + KTTLLSSVAGFEKVNSGTIQIDGKQVSEPCISNVTIFQNYGLLPWRTVQKNVELGLES + KKLSKKERYDIASRYIDLVGLSKFSKSHPSQLSGGMQQRVAIARALAVDPEIIFMDEP + FGALDALTRLKMQDEISNIWEHEKKTIIFVTHDIEEAVFLADRIVIMTPNPGKIKSII + SVPLARNRDRTSHDFLKIRDRVFSEFNMKNPDKTEYYI" + gene complement(499753..500520) + /locus_tag="Ccel_0436" + CDS complement(499753..500520) + /locus_tag="Ccel_0436" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cth:Cthe_2803 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL74818.1" + /db_xref="InterPro:IPR000515" + /translation="MKKLIHILVSFALILILWQGAVSLGYWNQALLPSPPDVGNGFLE + LVSSGTLFAGVKSSMYRFFVGYLLAAFSAVTLGLVLGWFRNAWSFVNPVVQLVRPISP + IAWFPFIVLIFGIGDLPAIVIIFIAAFFPILLATVNAVGKVDQTYIKVAKNFGIKQPM + LLTKIVLPAAFPSIASGLHIALGTAWVFLVAGEMVGAQTGLGFMIIDARNNLRADLLL + ANILSIGIIGLILDSFIGLAEKQLLKRWGVIGGNNVY" + gene complement(500544..501503) + /locus_tag="Ccel_0437" + CDS complement(500544..501503) + /locus_tag="Ccel_0437" + /inference="protein motif:SMART:SM00062" + /note="SMART: extracellular solute-binding protein family + 3; + KEGG: cth:Cthe_2802 NlpA lipoprotein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 3" + /protein_id="ACL74819.1" + /db_xref="InterPro:IPR001638" + /translation="MSIKKSIVAALIFGLIAGTAACGNSGGVKESGLSNIKTIKIAYL + PLTHALPVFVEKELQDKKENKYKIELVKYGSWPELMDALNTGHVDGASVLIELAMKAK + EQSIGVKAVALGHKDGNVIVVSKNIKSPSDLKGKNFAIPHRQSSHNILLGQMLKNVGL + SYKDVNIVELPPPEMPAALAQGQIAGYSVAEPFGAKSIALDTGKVLFESNELWKDSIC + CSLVLSDKFINSNKDVAKEVVSSFRDAGEYIGSHKDEANAIAKKYLNLDDKVLTLSLK + WISFNDLEITREAYDSLTSKIKEFGISSNPPAYDDFVDSSLLR" + gene complement(501546..503537) + /locus_tag="Ccel_0438" + CDS complement(501546..503537) + /locus_tag="Ccel_0438" + /inference="protein motif:TFAM:TIGR01702" + /note="TIGRFAM: carbon-monoxide dehydrogenase, catalytic + subunit; + PFAM: Prismane; + KEGG: cth:Cthe_2801 carbon-monoxide dehydrogenase, + catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="carbon-monoxide dehydrogenase, catalytic + subunit" + /protein_id="ACL74820.1" + /db_xref="InterPro:IPR004137" + /db_xref="InterPro:IPR010047" + /translation="MNFRYHHTKFDHSENHHHNDSGCNDYATAVAEYRKSFASKKEVL + EQTPDPAVKAMLLYMEEKGCETVFDRFDAQKPQCGFGLAGVCCRICNMGPCKITKKSP + KGVCGADADVIVARNILRSVAAGAAEHGARGRESMLALKYASEGRIKFPIEGENKVLA + TAKAFGLDTENKSIKELAGLIADILLEDLSRTIPGPHHTLNAFASKERINVWSNLDII + PISPYHEVFESLNRTGTGNDSDWENIMKQMLRTGVAFAWSCVLGSSIAMDSLFGLPVR + STSKVNIGALEKGYVNIGIHGHSPVLVSEIVKLGNSDEFQELARQNGALGIKFYGICC + SGLSAMYRYGGVIPLSNAIGAELVLGTGALDLWVADVQDVFPSIMEVASCFKTTVVTT + SDSARLPGAEHYGFDHHHSNIDQTSELATKILNRAIESFTQRREVPVYIPPYEIEAEV + GFSVEYINRHFGSVKPIAEALKNGEILGIVNLVGCNNPRIVYEKAIVELTDILLENNV + LVLTNGCASFPLMKLGYCSTAALERTGDNLKGFLKDLPPVWHMGECLDNARASALFKA + VAETSDIYIKDMPYAFASPEWSNEKGICAALSFRLLGIDSYHCVYAPTQGSDNVTEFM + SNGTKDILGSRMIVNVNHIELANEIVNDLKVQRKALGWD" + gene 503743..503931 + /locus_tag="Ccel_0439" + CDS 503743..503931 + /locus_tag="Ccel_0439" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74821.1" + /translation="MGKQKKDYEIVIFTPDTQEQIMHLKNEIGKAYGEFIIEHLTELD + ISYKQITSIYRKIIKEIR" + gene 503940..505598 + /locus_tag="Ccel_0440" + CDS 503940..505598 + /locus_tag="Ccel_0440" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: drm:Dred_0913 resolvase domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL74822.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MRAAIYSRKSRITGRGESIENQIQICKEYAINNLGLSENDFVIF + EDEGFSGGNTNRPEFKHMMSEARNKKIDIVICYRLDRISRNVSDFSQLINELERYNVS + FISVKEQFDTTKPMGRAMMYIASVFSQLERETIAERIRDNMLQLAKTGRWLGGVSPTG + YKSEMILKKDSALKQTRMFCLRIIPEEAELVKDIYDKFIIFKSMTKVEKSLLENRLRT + KNGVDFSRFSLRFLLTNPVYAIADAKLYYYLSEQGYEIYSDLRAFNGVNGVMAYNKTR + QGKNTLSEKYRDPKEWVIAVGMHPGIIPSGKWIEVQKLLQRNKTKAYRNIKNTSALLS + GILKCENCGSFMRPKTMTRMNSNGDKIFYYICELKEKSNKTRCDTQNLNGNILDSLIL + ERVANMTKKYIPAVSHNISVNRLGMKMEQKPEIKLIKDKLTAAETEMKNLIRLASKQA + DEKVQTMILKRMQSISQDINIYRSKIKKYDDVTNKSGIEPADERNLIRILSDPGYCIM + NMMKIKQKRSIIKSAVDVITWDGRQIKLRLKGSSEMLPDCKDCK" + gene 506116..507456 + /locus_tag="Ccel_0441" + CDS 506116..507456 + /locus_tag="Ccel_0441" + /inference="protein motif:TFAM:TIGR00797" + /note="TIGRFAM: MATE efflux family protein; + PFAM: multi antimicrobial extrusion protein MatE; + KEGG: cbe:Cbei_2413 MATE efflux family protein" + /codon_start=1 + /transl_table=11 + /product="MATE efflux family protein" + /protein_id="ACL74823.1" + /db_xref="InterPro:IPR002528" + /translation="MYTNKDLLRLFFPALTEQFLSTAIGVVNTMMVSGLGAFAVSAVG + IVDSINFVVMNLFVAVSTGATVTIAQHLGASNREDASKTASQAITAVLIMSIIAGLGL + YIFGNQIINFLFGDAEKIVKTAARTYMICSAISYPILGLFDVCTGILRASNNFRAAMY + AVVASNLVNFLVGALFIFVFDFGVLGAGIGLICARLTGTIIVAYSICKSHHLDVLRSS + FKIKYKILKPVLYIGLPAGIDSLVFNGGKLLVQAIVASLGTAALAANSIAGSINSLLN + IPGNAMTIVAVTVVGHYAGAGLKEELNKIMKKLMVYAMLLLGAVSLIFFPFVHHFLKL + YSPAPDVASLALNITYLTLICIPVFWPAAFLLPSCLRSTRDVIFVTIVSIMSMWIVRV + FGGYMLVRYTGLGLMGIWIAWCFDWVTRGIPFLERVAAKRYEKYLPKTNSEPSS" + gene 507604..508362 + /locus_tag="Ccel_0442" + CDS 507604..508362 + /locus_tag="Ccel_0442" + /inference="protein motif:PFAM:PF00318" + /note="PFAM: ribosomal protein S2; + KEGG: cth:Cthe_1006 SSU ribosomal protein S2P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S2" + /protein_id="ACL74824.1" + /db_xref="InterPro:IPR001865" + /db_xref="InterPro:IPR005706" + /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAEYIFTERNGIYIIDLQ + KTVKKVDDAYFFIREIAMNGQDVLFVGTKKQAQDSIREEAERSGQFFVNNRWLGGMLT + NFKTITKRINRLHQLNAMETDGTFEVLPKKEVSKLKKEMADLEKNLGGIKNMKKLPGA + MFVVDPRKERNAILEAKRLGIPVVAIVDTNCDPDEVDFVIPGNDDAIRAVKLIAAKMA + DAVIEGRQGEQLAETPVETAEVAEEAQVAVEAAE" + gene 508482..509129 + /locus_tag="Ccel_0443" + CDS 508482..509129 + /locus_tag="Ccel_0443" + /inference="protein motif:TFAM:TIGR00116" + /note="TIGRFAM: translation elongation factor Ts; + PFAM: ubiquitin-associated- domain-containing protein; + Translation elongation factor EFTs/EF1B dimerisation; + KEGG: cth:Cthe_1005 elongation factor Ts" + /codon_start=1 + /transl_table=11 + /product="translation elongation factor Ts" + /protein_id="ACL74825.1" + /db_xref="InterPro:IPR000449" + /db_xref="InterPro:IPR001816" + /db_xref="InterPro:IPR014039" + /translation="MITAEMVRQLRERTGAGMMDCKRALTDANGDAEKAIELLREKGL + SAAAKKAGRVAAEGLVEAYIHGDGRIGVLVEVNIETDFAARGDEFKQFVKDIAMQIAA + SKPEYVKKEDVPASVIESEKEILRAQARNEGKPEKIIDKMVEGRIEKFYAENCLLEQS + FIKDPDMTVGQLVTEKIAHIGENITIRRFARFERGEGVEKKEENFADEVLKQING" + gene 509314..510021 + /locus_tag="Ccel_0444" + CDS 509314..510021 + /locus_tag="Ccel_0444" + /inference="protein motif:TFAM:TIGR02075" + /note="TIGRFAM: uridylate kinase; + PFAM: aspartate/glutamate/uridylate kinase; + KEGG: cth:Cthe_1004 uridylate kinase" + /codon_start=1 + /transl_table=11 + /product="uridylate kinase" + /protein_id="ACL74826.1" + /db_xref="InterPro:IPR001048" + /db_xref="InterPro:IPR015963" + /translation="MSELKYKRIMLKISGEALAGDKGHGIDTDTVNEICDRISVVHKL + GAEIAIVVGGGNFWRGRSGKGMDRTTADHMGMLATVINSLGLQDALESRDIPVRVQTA + IEMRQIAEPYVRRKAVRHLEKKRIVIFACGMGNPYFSTDTAAALRAAEIDAQVILMAK + NVDGIYDSDPSKNSHAIKYNKLSYQEYLNKGLCAIDLTAASFCKDNAIPTLVFGLNDP + DNIIKAAKGQEIGTTIY" + gene 510074..510631 + /locus_tag="Ccel_0445" + CDS 510074..510631 + /locus_tag="Ccel_0445" + /inference="protein motif:PFAM:PF01765" + /note="PFAM: ribosome recycling factor; + KEGG: cth:Cthe_1003 ribosome recycling factor" + /codon_start=1 + /transl_table=11 + /product="ribosome recycling factor" + /protein_id="ACL74827.1" + /db_xref="InterPro:IPR002661" + /translation="MDKELYKPIEEKMKKTINVLRDNLAGIRAGRANPAILDKLTIDY + YGAPTPIQQVATVSIPEARVILIQPWEAKLLKDIEKEIQKSDIGINPNNDGKVLRLVF + PALTEERRRELTKQAKKEGEESKIAIRSIRRDSIETMKAKKKSGEITEDDLKDAEKDI + QNITDRYIAEIDRVIEAKDKEIMEV" + gene 510637..510900 + /locus_tag="Ccel_0446" + CDS 510637..510900 + /locus_tag="Ccel_0446" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1002 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74828.1" + /translation="MSYTEIDKNNGCTVNKEVQLTSFCNSLIGYTLKDALKAASDRRY + PIDCIFISSPPKMNITEYDDSFRVIRVKALKNKSLNILVCKPL" + gene 510975..511730 + /locus_tag="Ccel_0447" + CDS 510975..511730 + /locus_tag="Ccel_0447" + /inference="protein motif:TFAM:TIGR00055" + /note="TIGRFAM: undecaprenyl diphosphate synthase; + PFAM: Di-trans-poly-cis-decaprenylcistransferase; + KEGG: cth:Cthe_1001 undecaprenyl pyrophosphate synthetase" + /codon_start=1 + /transl_table=11 + /product="undecaprenyl diphosphate synthase" + /protein_id="ACL74829.1" + /db_xref="InterPro:IPR001441" + /translation="MGFFNRIFPQKKLSDDFQCVPKHIAIIPDGNGRWAKKRGLPRNV + GHREGSMTLKKVVIYCSNIGVKHLTIYAFSTENWKRPQSEVDALMNLLLEFLRNAERE + LEGSNVRIKVIGDINGLPGELQNEIARVEKFTGVNNGLNLNIALNYGSRFEILNAVRN + IAQEIKNGKLSINDIDEKQLEQHLYTKGIPEPDLLIRTSGEQRISNYLLWQCAYTEFW + FTDTLWPDINDRHIADAIKAFEKRNRRYGGVEN" + gene 511789..512616 + /locus_tag="Ccel_0448" + CDS 511789..512616 + /locus_tag="Ccel_0448" + /inference="protein motif:PFAM:PF01148" + /note="PFAM: phosphatidate cytidylyltransferase; + KEGG: cth:Cthe_1000 phosphatidate cytidylyltransferase" + /codon_start=1 + /transl_table=11 + /product="phosphatidate cytidylyltransferase" + /protein_id="ACL74830.1" + /db_xref="InterPro:IPR000374" + /translation="MARTRIISGLVGLVLLIGVLYMGSVVLGIVVSIIAAIGLYEFYN + SISNTKGIHPIKIVGYLSIVPLFVLGLQSTGWYNIDLGIMTGISVCLIIFVSMASIVF + GHKKYNIVDACATVFGIAYIPFLMSFLIMLRNMDNGNILIWLIFIGAWGTDTLAYTFG + RLFGKRKIIPEISPKKTLAGALGGILGCTLLMVIYGIVVNNYFNLDITYFTLILLGLL + CGVISQIGDWAASAIKRYVNVKDFGNIMPGHGGVLDRFDSILFVAPVIYYVLALFIK" + gene 512654..513799 + /locus_tag="Ccel_0449" + CDS 512654..513799 + /locus_tag="Ccel_0449" + /inference="protein motif:TFAM:TIGR00243" + /note="TIGRFAM: 1-deoxy-D-xylulose 5-phosphate + reductoisomerase; + PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase + domain protein; + KEGG: cth:Cthe_0999 1-deoxy-D-xylulose 5-phosphate + reductoisomerase" + /codon_start=1 + /transl_table=11 + /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" + /protein_id="ACL74831.1" + /db_xref="InterPro:IPR003821" + /db_xref="InterPro:IPR013512" + /db_xref="InterPro:IPR013644" + /translation="MAKIISIIGSTGSIGRQTLEAAKNLGIKVAALSANSNIDLLEKQ + VHEFKPDVVSVGNSELAKEMSNRLQGFGIEVLWGQDGMKRVVEHSEADTVVTSVVGTA + GLIPTIHAIRHKKNIALANKETLVTAGQLVMEDAKKNNVKIFPVDSEHSAIYQCLLGN + KDKQVEKIILTASGGPFRGKNIKELKNITPAQALKHPNWSMGNKITIDSATLMNKGLE + VIEAKWLFQRDLDSIQVLVHPQSIIHSMVQYVDGSVMAQLGSPDMRIPIQLALTYPDR + CQNNFNKLDFLKCPPLTFEEPDIDTFKCLRLAYKSLEIGGTMPAALNAANEIAVAAFL + ENHIGFTEIAETIEQVMQRHNVNICPCLEDIIEVDCWARTTARQLII" + gene 513835..515121 + /locus_tag="Ccel_0450" + CDS 513835..515121 + /locus_tag="Ccel_0450" + /inference="protein motif:TFAM:TIGR00054" + /note="TIGRFAM: membrane-associated zinc metalloprotease; + PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; + KEGG: cth:Cthe_0998 peptidase RseP" + /codon_start=1 + /transl_table=11 + /product="membrane-associated zinc metalloprotease" + /protein_id="ACL74832.1" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR004387" + /db_xref="InterPro:IPR008915" + /translation="MGILLAILALSFLIIIHELGHFLVAKAFNVRVNEFSLFMGPKIF + SFVRGETTYSLRLIPLGGYVKMEGEEEASDDDRAFNKKPIGVRSAIIAAGPIMNIIIA + VVFAFIIMAQSGFYTNEVKTVLPGSAGEKAGIQVGDVLEKYNGKNIYQVNDLEIFAYP + LTNESIDLQVRRNGESKTIHFKPDRMSGYKLGFSPKAESGSESNVVANVSNKSPAMKA + GVKDGDRIVKLNGTPVKSRQDIASALDKIELNNVTITVDRNGKEIDLAPVVPMQGKNP + EYYAIGVDFNHTKSGIFASLSQSVKYNISIARSIYYSIGWLFTGTVPASDLMGPVGIT + TTIKDVVQLGPSIMDKLLNLLSFTAMISLNLGLVNLIPFPALDGSKLVLLLVEGIRKK + PLSPEREALISMIGFVFLIMLMIYATFNDILRIGRG" + gene 515132..516193 + /locus_tag="Ccel_0451" + CDS 515132..516193 + /locus_tag="Ccel_0451" + /inference="protein motif:TFAM:TIGR00612" + /note="TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl + 4-diphosphate synthase; + PFAM: IspG family protein; + KEGG: cth:Cthe_0997 4-hydroxy-3-methylbut-2-en-1-yl + diphosphate synthase" + /codon_start=1 + /transl_table=11 + /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + synthase" + /protein_id="ACL74833.1" + /db_xref="InterPro:IPR004588" + /translation="MEDCIKRNQTKKIKVGDIFIGGDSPISVQSMTNTDTRDVKATIH + QIKSLEEAGCDIVRLAILDNEAATAIGEIKKHVKIPLVADIHYDYRLAVECMKNGVDK + IRLNPGNIGGNDRVRTVAGMAKERGIPIRIGVNSGSVEKRILEKFGGVTAEGMVESAL + AHVAMLENVDFNDIAISIKASSVPMTIAAYRLLSEKCLYPLHVGVTEAGTVYKGTIKS + AVGIGCLLAEGIGDTIRVSLTGDPVEEIKVGKQILKSLDLLKEGIEIVSCPTCGRTQV + NLIDIANSIEPLLEKLNKNIKVAIMGCAVNGPGEAKDADIGIAGGVNEVLLFKKGRII + RKIPQENVVEELIKEISEM" + gene 516268..520569 + /locus_tag="Ccel_0452" + CDS 516268..520569 + /locus_tag="Ccel_0452" + /inference="protein motif:TFAM:TIGR01405" + /note="KEGG: cth:Cthe_0996 DNA polymerase III PolC; + TIGRFAM: DNA polymerase III, epsilon subunit; DNA + polymerase III, alpha subunit; + PFAM: PHP domain protein; nucleic acid binding OB-fold + tRNA/helicase-type; DNA polymerase III alpha subunit; + Exonuclease RNase T and DNA polymerase III; + SMART: phosphoesterase PHP domain protein; Exonuclease" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, alpha subunit" + /protein_id="ACL74834.1" + /db_xref="InterPro:IPR003141" + /db_xref="InterPro:IPR004013" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR006054" + /db_xref="InterPro:IPR006055" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006308" + /db_xref="InterPro:IPR011708" + /db_xref="InterPro:IPR013520" + /translation="MDSTNNINRFLYDLFPDAMDFDGEFSALKQLKVERMSVFIKANR + LEIHTISSDIVSIALIMKAEECLKQKLGAPNLTLKVKCSRSYSVEEYLSIMWSELMQM + LTSKVALCRGILHGSKYEISGNKIIINLLTSGADILKAQNCHTMLEQHIKGTICQSVK + VEFCDMHVDHVIIEEYVAEKVKNEAKVVSSAITALPENQKQKKYEFKSYGSGDMPSKA + VITGKPFTDSIMKISEVTPDSGKVAVAGEVFRTEYREIRGGKYIYIFDVTDFTSSVTV + KMFLEKKDFGNISERITEGVCLRIRGEAQYDKFSKELAIMAFDIVETEREIRHDDAEE + KRVELHLHTQMSSMDGVTAVKDLVKRAAQWGHKAIAVTDHGIVQAYPDAYAASKKNNI + KVIYGLECYLLDDSVPIVYGIKEHSLDDDFVVFDIETTGLNPQQDRITEIGAVKVRNG + QIVDRFSAFVNPGVSIPSFIVKLTGITNDMVKDAPPIEQVLNEFMEFIQGSVLVAHNA + NFDVGFIKHNAKIIGEKVKNPYLDTLELCRKMFPELGRYKLNIVAKHLKIELENHHRA + VDDSMATAKIFIHCLNELKEKGCKNIKDIQNAFDGEVNLKASSYHAIILVKNKVGLKN + LYKIVSQSHLKYLYKKPRVPKKLLMEYREGLILGSACEAGELYRAILNNKSEDEISKI + VRFYDYLEIQPLGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKPVVATCDVHFMD + PRDEVFRRILMSGRGFTDADNQAPLYFRTTEEMLEEFSYLGEEKAREVVIENTNLIAD + MIESIAPVLEGTFPPKIEGAEQDIENMAMNRAKEIYGEELPEVVAKRLEKELNSIIKN + GFAVMYLIAQKLVSKSLNDGYLVGSRGSVGSSFVANMSGITEVNSLQPHYVCEKCKYS + EFILDGSYDCGFDLPEKDCPNCGNKLKKDGYDIPFETFLGFDGDKEPDIDLNFSGDYQ + PVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNYLDERSIVVTNAEINRLVKGCT + GIKRTTGQHPGGIMIVPKDKEIFDFSPIQRPADDIKSEIITTHFDYHFLHGSILKLDI + LGHDDPTVIRMLEDLTGVDARTIPIGEKKTMSLFSSTEALGVKPEDIGSETGTFAVPE + FGTKFVRQMLLDTKPQSFSELIRISGLSHGTDVWLNNAQELIRDGITTLSQSICCRDD + IMIYLMHAGLPPKTAFKIMEDVRKGKGVKEEYEAIMKENNVPDWYIQSCKKIKYMFPK + AHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADDFDAEMMTYGQDKVRNKIKEFEMK + GNNITTKEKNVLTILEVVNEMYARGINFLPINLYLSEATKFRIEDKSIRPPMNALQGL + GGAAAQNIIEARKNGEFLSIDELRTRAKISKSVIEILERNNVLEGMPESNQLCLF" + gene 520889..521347 + /locus_tag="Ccel_0453" + CDS 520889..521347 + /locus_tag="Ccel_0453" + /inference="protein motif:PFAM:PF02576" + /note="PFAM: protein of unknown function DUF150; + KEGG: cth:Cthe_0995 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF150" + /protein_id="ACL74835.1" + /db_xref="InterPro:IPR003728" + /translation="MKKNIQQTVTELVSPVVESLNYELVDIEYVKEGANWYLRVYIDK + PGGISIDDCQAVSEQVSDLLDKDDPIDQSYFLEVSSPGLDRPLKTEKDFAKYKGELVE + VKVFQPIDGKKIFEGELVGLKDNIIVINQDGHNVQFERDEVAIVKRVIKF" + gene 521381..522529 + /locus_tag="Ccel_0454" + CDS 521381..522529 + /locus_tag="Ccel_0454" + /inference="protein motif:TFAM:TIGR01953" + /note="KEGG: cth:Cthe_0994 NusA antitermination factor; + TIGRFAM: transcription termination factor NusA; + PFAM: RNA binding S1 domain protein; NusA domain protein; + SMART: KH domain protein" + /codon_start=1 + /transl_table=11 + /product="NusA antitermination factor" + /protein_id="ACL74836.1" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR004087" + /db_xref="InterPro:IPR004088" + /db_xref="InterPro:IPR010213" + /db_xref="InterPro:IPR013735" + /translation="MSAELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMN + VKVNIDRVTGDVKVFALRKVAEDPDVEAMDISIGEAAKLNPTLDIGDYVESEVTPRSF + GRIAAQTAKQVVVQKLREAERGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAV + LGSTEQTPGEEYRFNERLKSYIVEVKKTTKGPQIMLSRTHPGLVKRLFELEVPEIHDG + TVEIKSISREPGSRTKLAVYSKDENVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWS + NDPKDYISSSLSPAKVVRVDVDEEEKSAKVVVPDYQLSLAIGKEGQNARLAAKLTGWK + IDIKSESQLRQSIEKQLFDDSLNNGYLDETDTDSMNYDNDDHENNIID" + gene 522592..522864 + /locus_tag="Ccel_0455" + CDS 522592..522864 + /locus_tag="Ccel_0455" + /inference="protein motif:PFAM:PF04296" + /note="PFAM: protein of unknown function DUF448; + KEGG: cth:Cthe_0993 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF448" + /protein_id="ACL74837.1" + /db_xref="InterPro:IPR007393" + /translation="MKQKKIPLRMCLGCKEMKPKRELIRVVKNNEGEISIDLVGKKPG + RGAYICRSADCLEQAIKAKRLEKAFETTIDMDIYNILKNQLEENDE" + gene 522857..523195 + /locus_tag="Ccel_0456" + CDS 522857..523195 + /locus_tag="Ccel_0456" + /inference="protein motif:PFAM:PF01248" + /note="PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; + KEGG: cth:Cthe_0992 50S ribosomal protein L7AE" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L7Ae/L30e/S12e/Gadd45" + /protein_id="ACL74838.1" + /db_xref="InterPro:IPR004038" + /translation="MNKVYSLLGLAKKAGQLLSGDETCERTVKSGKAELVIVADDASE + NTKDKFKSMCNYHSIPYREYGQKLQLGKYTGKDIRAVVSIVSKDFKNGLLKLIDNSTN + ETGGEGFGKS" + gene 523182..526667 + /locus_tag="Ccel_0457" + CDS 523182..526667 + /locus_tag="Ccel_0457" + /inference="protein motif:TFAM:TIGR00487" + /note="TIGRFAM: translation initiation factor IF-2; small + GTP-binding protein; + PFAM: protein synthesis factor GTP-binding; GTP-binding + protein HSR1-related; elongation factor Tu domain 2 + protein; translation initiation factor IF-2 domain + protein; Miro domain protein; + KEGG: cth:Cthe_0991 translation initiation factor 2" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor IF-2" + /protein_id="ACL74839.1" + /db_xref="InterPro:IPR000178" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006847" + /db_xref="InterPro:IPR013684" + /translation="MEKARIYELAKELNTTSKRLMEKLAEIDISVKNHMSLLEPHELD + ALYKHIGVIRHDDKKNEVEEKKTVAESTNTTEKKKEVKKEVKKENKNAPRIIRTTEII + IDSSTEDSSGANNFPKNETKNVQKKNYKNNFVKVESSTSGLRPGFVRDVKPDLRNKQN + AASSKNEVKKALPKETSAPKEEVLNSKIINEDIHKEEKTVADNKGNGSKVLKGSSNTE + SAQLNNKVAAVEKEEQKSINKPESAQISTQSENKPQQSNGAKQPEEAVVSVNKDSIGK + SEQVTAQNDVPSVNKVHPQEKPVHRTDRPQGQYNNQRSDRPQGQYNNQRSDRPQGQYN + NQRSDRPQGQYNNQRSDRPQGQYNNQRSDRPQGQYNNQRSDRPQGQYNNQRSDRPQGQ + YNNQRSDRPQGQYNNQRSDRPQGQYNNQRSDRPQGQYNNQRSDRPHGQYNNQRSDRPQ + GQYGNKRPDRPQGQHRQQNLDIPKPDASVAQEAFDSQRNEARREFQGRDFDKNVKREE + KQKKEAPKSNTATKQRFRPQKIVIEKKGVSEILSEDYIFNEFYNDDGKKKKHRNKRND + KVQVKYIPPKAVLTSITIPESLTVKDLAESLKKTSTEIIKKLMAYGVMATLNNEVDFE + TATIIAEEYGVKTEKAIQVSEEDILFDDDEVQDESKLQPRPPVVVVMGHVDHGKTSLL + DAIRSEHVIDSEAGGITQHIGAYTVKANDRAITFLDTPGHEAFTAMRARGAQVTDIAI + LVVAADDGVMPQTIEAINHAKAANVTIIVAINKIDKPSANPDKVKQELTEYGIVAEEW + GGDAIMVPVSAKKRENIDQLLEMVLLAADMLELKADPERQAKGTVIEAKLDKERGPVA + TVLVQRGTLKTGDSLIAGSTFGRIKAMTSDKGHAIKAAGPSIPVEILGMDEVPEAGEV + FYAVTEDKVAKHLVEKRKFKQKEQQFKATSKVTLEDLFTQIKEGKVKDLNIIIKADVQ + GSVEAVKQSLEKLSNDEVRVKTIHGAVGAITESDVTLAQVSNAIIIGFNVRPGANVTE + AAKNAEVDMRLYSVIYKAIEDVQAAMNGMLEPTYKEVILGHIEIRQIFKVSGVGTIGG + AYVTDGKVQRNSEVRVVREGIVIHEGKLASLKRFKDDVKEVAQGFECGVSIERFNDIK + EGDVIEAFVMEEVKR" + gene 526895..527248 + /locus_tag="Ccel_0458" + CDS 526895..527248 + /locus_tag="Ccel_0458" + /inference="protein motif:PFAM:PF02033" + /note="PFAM: ribosome-binding factor A; + KEGG: cth:Cthe_0990 ribosome-binding factor A" + /codon_start=1 + /transl_table=11 + /product="ribosome-binding factor A" + /protein_id="ACL74840.1" + /db_xref="InterPro:IPR000238" + /translation="MADRIVRISEEVKKEISNIIQNDIKDPRLPSMVSIVSCSVTKDL + RYAKVYVSVFGNDEQKKNAISALKSAAGFIRRELGHRVQLRYTPEIHFELDTSIEHGF + HINKLLDDAKKEFTE" + gene 527281..528243 + /locus_tag="Ccel_0459" + CDS 527281..528243 + /locus_tag="Ccel_0459" + /inference="protein motif:PFAM:PF01368" + /note="PFAM: phosphoesterase RecJ domain protein; + phosphoesterase DHHA1; + KEGG: cth:Cthe_0989 phosphoesterase, RecJ-like protein" + /codon_start=1 + /transl_table=11 + /product="phosphoesterase RecJ domain protein" + /protein_id="ACL74841.1" + /db_xref="InterPro:IPR001667" + /db_xref="InterPro:IPR003156" + /translation="MEKGLIKAIETAESIAIFPHTSADGDAIGSSLALALALKKTGKK + VIVYMEESIPDTYKFLPGSELAVFISENDDIMGLNIALDTGDTARLASRAALFFKAPA + TINIDHHITNTKFAQYNHVDASAASTGELVFLLLKEMNYEIDADMAKCLYTAIVTDTG + GFKYGNTTAETHRTAAELLSTGIDVADLSQKLFDNTTFVKLKLTQKAIELLELYENDL + LAVTVITQDVLQSTGAKDEDCDGLVNIGRSIEGVEVSVLIKEKSTNEIRVNLRSKTYV + DVSEIAAAFGGGGHKRAAGCTIKGRITDVKEQLINTIKDKLKRR" + gene 528246..529175 + /locus_tag="Ccel_0460" + CDS 528246..529175 + /locus_tag="Ccel_0460" + /inference="protein motif:TFAM:TIGR00431" + /note="TIGRFAM: tRNA pseudouridine synthase B; + PFAM: pseudouridylate synthase TruB domain protein; + KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B" + /codon_start=1 + /transl_table=11 + /product="tRNA pseudouridine synthase B" + /protein_id="ACL74842.1" + /db_xref="InterPro:IPR002501" + /db_xref="InterPro:IPR014780" + /translation="MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGV + LPLCIGNATKALEFMINKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSI + ISFMGTIEQLPPMYSAIKIGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVF + ESEGIPQEFAIKKVLLDIHCSKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDN + SLTIEEVAQLSETKSLEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKN + TFYRVYNNNSFLGLGEVFEKGNTLYLKSKKFFK" + gene 529197..530132 + /locus_tag="Ccel_0461" + CDS 529197..530132 + /locus_tag="Ccel_0461" + /inference="protein motif:TFAM:TIGR00083" + /note="TIGRFAM: riboflavin biosynthesis protein RibF; + PFAM: FAD synthetase; Riboflavin kinase; + KEGG: cth:Cthe_0987 riboflavin kinase / FMN + adenylyltransferase" + /codon_start=1 + /transl_table=11 + /product="riboflavin biosynthesis protein RibF" + /protein_id="ACL74843.1" + /db_xref="InterPro:IPR002606" + /db_xref="InterPro:IPR015864" + /db_xref="InterPro:IPR015865" + /translation="MQVINSNNSNNIFSCYTGVGLGNFDGLHIGHMALINTLIRESKL + NGLSSVVYTFTRHTENILRKKLITPLLLTESKKIELLSETTLDYLYLDEFNEAFSRMS + PEEFVIKILKSKLNIKLAVAGHDYRFGYKGEGDIPLLEQFGKKYGFKVVVIPPITCDN + EIISSTSIRQSIINGNLETAYKLLGRNYSIIAEVVNGRRVGNTIGFPTANIHPEKYLV + LPHNGVYITKTLLNGHLYNSMTNVGYNPTFEDVQQKTIETHIMDFHQDIYGEKIEVFF + LKKIRDEKKFSNVEELIIQITKDMRVARDYLNIDS" + gene 530153..532525 + /locus_tag="Ccel_0462" + CDS 530153..532525 + /locus_tag="Ccel_0462" + /inference="protein motif:TFAM:TIGR00143" + /note="TIGRFAM: [NiFe] hydrogenase maturation protein + HypF; + PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger + HypF domain protein; + KEGG: gsu:GSU0306 hydrogenase maturation protein HypF" + /codon_start=1 + /transl_table=11 + /product="(NiFe) hydrogenase maturation protein HypF" + /protein_id="ACL74844.1" + /db_xref="InterPro:IPR001792" + /db_xref="InterPro:IPR004421" + /db_xref="InterPro:IPR006070" + /db_xref="InterPro:IPR011125" + /translation="MTGYRIIITGIVQGVGFRPFIFNLAERFGMKGWVGNTDSNVIIE + IDSDFQKVVDFINEIKKSAPVLSRIKSIEYKDIVYQGFKNFEIRHSQKNSKGPVFISP + DVATCCDCLREMKDKSDRRYRYPFINCTNCGPRFTIIKNIPYDRDNTTMKYFEMCENC + RQEYTKPSDRRYHTQPVSCHECGPHLSIADETGKIMREIQSSRECITFTADLVKKGNI + VAVKGIGGYHLACDGLNKKAVDRLRTRKHRDDKPFAVMAKDLRTAEKYCKINYVEKNI + LTSTASPIVLLEKKDGVILPESLAHLNRYLGVMLPYTPVHHLLFEEKGFPELLVMTSG + NLSNEPIFYKDEEAVEGLQGIADAYLTNNREIYIRTDDSVTRVFNAKEYIIRRARGHV + PNPVSINVHELLDMDKTIEIPSVLACGGELKNVFCLNKGKNFYLSHHIGDLENESTNI + AFRNGIEHFKRLFDISPQLIAYDLHPNYYSSQYALKQRYVEKVSIQHHKAHIASCMAE + NKLKGDVIGVSFDGTGYGEDGNIWGGEFFTGGYYGFRRAGHLAYVMMPGSDSAVRHPW + RMALSYLYASVQGVPDKVMEITNKLPAFMDRSKEEIIFTIKMLEKRINSPFTSSMGRF + FDAVSALLGIKTNISYEGQAAIELEYYADLSCTDPYLFDIEKTVFEESFTINTGCTIK + QIVDDILAGKGLGYISSRFHTTIAHIVLEGCLNIRSRKGLKNVVLSGGVFQNITLLKM + TVDSLEKQGFKVFIHSEVPSNDGGISLGQSIMAIAQMIKKRQVDFPALED" + gene 532624..532848 + /locus_tag="Ccel_0463" + CDS 532624..532848 + /locus_tag="Ccel_0463" + /inference="protein motif:TFAM:TIGR00074" + /note="TIGRFAM: hydrogenase assembly chaperone hypC/hupF; + PFAM: hydrogenase expression/formation protein + (HUPF/HYPC); + KEGG: deb:DehaBAV1_1241 hydrogenase assembly chaperone + HypC/HupF" + /codon_start=1 + /transl_table=11 + /product="hydrogenase assembly chaperone hypC/hupF" + /protein_id="ACL74845.1" + /db_xref="InterPro:IPR001109" + /translation="MCLGLPAKVVSIDGNSSNVEMMGVTNKVSIDLLESVKVGDYVLV + HAGCAIQVLDEEEALKTIDIFNEIKELGIK" + gene 532845..533930 + /locus_tag="Ccel_0464" + CDS 532845..533930 + /locus_tag="Ccel_0464" + /inference="protein motif:TFAM:TIGR00075" + /note="TIGRFAM: hydrogenase expression/formation protein + HypD; + PFAM: hydrogenase formation HypD protein; + KEGG: cac:CAC0811 hydrogenase expression-formation factor + (HypD)" + /codon_start=1 + /transl_table=11 + /product="hydrogenase expression/formation protein HypD" + /protein_id="ACL74846.1" + /db_xref="InterPro:IPR002780" + /translation="MRNYIDDFRDSEVISRIVQSLQGYSGPKLKIMEVCGTHTMAISR + YGLRSLLPRQIELVSGPGCPVCVTPTSYIDSATELADSKNVIITTFGDMMRVPGNNST + LLHKKAQGSNVQMVYSPLNAVELARNNPDKEVVFLSVGFETTTPVIALSVLKAKSEGI + KNYSVLTANKTMPEAIKALADDKELQIDGFLYPGHVSAIIGTDFFSYVAYNMEKAGVV + AGFEPLDILYSIKVLVDNIANGSIVFENMYSRIVAREGNIKAQQKMYEVFEPVDVVWR + GIGMIPRSGLGLVKDYEQFDAAKKFDIKSKDIPEPKGCLCGEVLKGKKRPGDCKLFKK + RCTPETPVGSCMVSSEGTCAAYYKYGE" + gene 533970..534983 + /locus_tag="Ccel_0465" + CDS 533970..534983 + /locus_tag="Ccel_0465" + /inference="protein motif:TFAM:TIGR02124" + /note="TIGRFAM: hydrogenase expression/formation protein + HypE; + PFAM: AIR synthase related protein; AIR synthase related + protein domain protein; + KEGG: npu:Npun_R0359 hydrogenase expression/formation + protein HypE" + /codon_start=1 + /transl_table=11 + /product="hydrogenase expression/formation protein HypE" + /protein_id="ACL74847.1" + /db_xref="InterPro:IPR000728" + /db_xref="InterPro:IPR010918" + /db_xref="InterPro:IPR011854" + /translation="MEKNMVTIAHGSGGAATSRLIEQTFKKHFDNDILSQGDDCARLD + IGDARNLVFTTDSFVVTPIFFNGGNIGKLAVCGTVNDLATSGAKPLYLSCGFIIEEGF + DLEDLEEIVKTMSATARECGVKIVTGDTKVVQKGAADKVFINTSGIGVIPDGLNISGK + NAKAGDKIIISGTIGDHGSSIFLERENMGFQAKIQSDCAPLSGMVQDILSVVPDVHVL + RDPTRGGVATTLNEIAVQSNVSILIREDSLPVKREVQGVCELLGMDPLYMANEGKMLC + FVSEDKSERVLEVLRKNKYGKDARIIGEVTEERQPKVLLKALSGGNRIISVLAGDQLP + RIC" + gene 535022..535750 + /locus_tag="Ccel_0466" + CDS 535022..535750 + /locus_tag="Ccel_0466" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_1763 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74848.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MIISIKDLGKVYKNGQIEVEALRNVDVNIDKEEFVAIMGPSGSG + KSTLMNIIGCLDKSTTGEYWLDGVNISTLNETELARVRNRKIGFVFQSFNLLPRITAL + QNVELPMIYAGVGAKERRKRAMLALERVGLEKRVHHKPNEMSGGQKQRVAIARSLVNS + PAIILADEPTGNLDSTAGEEIMTVFQDLNREGVTIVLVTHEPDIAEHTKRVLRFKDGM + LRSDEIVQNPLDARSVLSQYKEEA" + gene 535810..536547 + /locus_tag="Ccel_0467" + CDS 535810..536547 + /locus_tag="Ccel_0467" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bay:RBAM_014080 YknW" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74849.1" + /translation="MEENTQVSVSGAVSLTQSSQMSFIKRVAGVLFWPGKTMDNLAER + PRIAFPFIFLPIVQLAAIFAMFPMYREFVRISTEKLIANGLEIPADTLETTLNVSTVS + GIIGGAIGVVISWVLGSLILWGIIKLFKGQGYFKQILSITGYAGVITVLSAVVQVIQT + NIAGVYDNMSYTSIAVLMPRMDGNFIFGMAKFLDVFSIWHYAVIAIGVATVSKLPKKK + AYLIVGAIFVIQLLYAGVTEFRIAGLM" + gene 536575..537912 + /locus_tag="Ccel_0468" + CDS 536575..537912 + /locus_tag="Ccel_0468" + /inference="protein motif:TFAM:TIGR01730" + /note="TIGRFAM: efflux transporter, RND family, MFP + subunit; + PFAM: secretion protein HlyD family protein; + KEGG: cth:Cthe_1762 RND family efflux transporter MFP + subunit" + /codon_start=1 + /transl_table=11 + /product="efflux transporter, RND family, MFP subunit" + /protein_id="ACL74850.1" + /db_xref="InterPro:IPR003997" + /db_xref="InterPro:IPR006143" + /translation="MKKKIIIGVSLAVVIVALIAVGVVKNAGSVGSGAVFAVQTGEIK + KGDVSSFISANGTVSEIEKSEVYIDNPVKVTKLYVKQNDTVKKGQKLADIDVDDLNTQ + LETQKLQKKSQELLLKKAKTADTTISTLNHQNEITAAEKDVASKQRAYEQALKNRNEK + KALFDADAISKVELDSAENTLRDAEDMLGVSKLTLQAKKDAQNETSKTNSKSKAAQQI + DIESQQVAIQTTEVAIKDLENKIKKYKAAMFSTMDGVVSQVNVAEGSYTMAGQPVFVV + INPDKLEVKLSINEFNAKLMKPGQAVEISGDSIPDTEKVTGKVKSVAPMAKANTTNTG + SSETVIPVVISFDSVTPSIKPGITVSCDIKTVDISNVLTVDLDMLGQDKDDSKYVFVI + SPDKKTMQKKKIELGTTSDMKAELVGGGLKEGDLVVMNPNPAYKDGARIKIKD" + gene 537942..539159 + /locus_tag="Ccel_0469" + CDS 537942..539159 + /locus_tag="Ccel_0469" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: cth:Cthe_1761 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL74851.1" + /db_xref="InterPro:IPR003838" + /translation="MNIIESFKQALSSLRANKLRSVLTMIGIIMGVFSVITIVAIGNA + TQSYVDSEFAKIGANILIVSYKTSSLNTNDMLKSDDLKAISKSVKEIKNVGTDINRSG + TIRLDNKTRNASINGISSQYKDIVPVEMAQGRMINEIDNSTRSNVVVIDEEFAKANFG + NQDPIGQKLKVTLGSGSTLRLRVVGVTKIEETPFGGMIDNESRPVRLTIPMTTLQSYH + PDSDQFNYIYVSVDEKDKTVLKKIADKITKTLESKHGNKDKYSIQFYSDFQDGLNTVL + NVISSVLLVIAVITLIVGGIGIVNILLVSVTERIREIGVRKALGARKRDIVVQFITES + IILTGISGVIGIIMGILGGFIISSLVKIPPVLNIQVIVLAFLGSIALGLLFGVYPAKR + AADLDPIESLRYE" + gene complement(539226..539402) + /locus_tag="Ccel_0470" + CDS complement(539226..539402) + /locus_tag="Ccel_0470" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74852.1" + /translation="MNERNRKYARTTKKCNQIPESSEDTDFSLSTTMALGIVGGAFLI + GMVSGTLVSKCRSM" + gene 539573..540877 + /locus_tag="Ccel_0471" + CDS 539573..540877 + /locus_tag="Ccel_0471" + /inference="protein motif:PFAM:PF05193" + /note="PFAM: peptidase M16 domain protein; + KEGG: cth:Cthe_0986 peptidase M16-like protein" + /codon_start=1 + /transl_table=11 + /product="peptidase M16 domain protein" + /protein_id="ACL74853.1" + /db_xref="InterPro:IPR007863" + /translation="MIRTHVEEKLCRLFEKNGIAVYNINSDRFKTNTINIFFQDNLNK + DSVALNALFPSVLRRGCKGLPTIKEINLYLEKLYGAVFDCGIVKKGERQIIHFYFEYI + SDKYTNDSQRNFEKAFEFLMNIIFRPELKDGTFNEQYVEQEKNNLKMIIEGRTNDKVQ + YSMERCYELMCMDEPFGLYEYGTVEQIDEITNDRLYEHYKKKIESLPAEIFITGEIDD + KDIAFIKEKLSKVERSTPQKLNSSIILKCVKDVREYEDKMDVNQAKLCMGFRTHVQPA + DNDYYALMVFSGLLGGGMHSKLFQNVREKAGLAYYVFAGLEKFKGLMVIASGIDINNK + NTAQEIIMKQLDEIRLGNITEYEFEATLKSLKTGIMSLKDSQLYVVDFYLSQLINGTH + DTMETLVEKINRVTVDDIIKVANKVQLDTVYFLTSKSHERIK" + gene 540905..542188 + /locus_tag="Ccel_0472" + CDS 540905..542188 + /locus_tag="Ccel_0472" + /inference="protein motif:PFAM:PF05193" + /note="PFAM: peptidase M16 domain protein; + KEGG: cth:Cthe_0985 peptidase M16-like protein" + /codon_start=1 + /transl_table=11 + /product="peptidase M16 domain protein" + /protein_id="ACL74854.1" + /db_xref="InterPro:IPR007863" + /db_xref="InterPro:IPR011765" + /translation="MKFDTIEYKKYNELFYRYEHSSGLNCIVIPKKGYYKKYATFSTQ + YGSVDNEFIIPGENEPIRVPDGIAHFLEHKLFEQKDGSVMDKFAALGSKPNAFTSFNQ + TVYLFSCTDLFSENFKLLLNFVQNPYITDESVEREKKIIGQEINMYRDDPGWRVNFNL + LKAMYKHHPVRYDIAGTTDSISEITKETLYQCYETFYHPSNMIITVVGDVDHIKVFEQ + VENGIQTSDKASEIKRIFPKESEGVNKRYFEQNMPVATPLFYMGFKDSNFDLEGGEIL + RYEIAVKLLLSMIMGKSSKLYEKLYDKGLINASFEMDFSLEKSYAYSMFGGESVNPEE + VQEMITNEIKILKKQGLDEEAFNRLLKASKGRFLRQLNSLENISRSFINLYFKGVTMF + DYLDVYDKMKFDYITDVFDSHFDIKHMALSVVKQK" + gene 542213..543286 + /locus_tag="Ccel_0473" + CDS 542213..543286 + /locus_tag="Ccel_0473" + /inference="protein motif:PFAM:PF01790" + /note="PFAM: prolipoprotein diacylglyceryl transferase; + KEGG: cth:Cthe_0984 prolipoprotein diacylglyceryl + transferase" + /codon_start=1 + /transl_table=11 + /product="prolipoprotein diacylglyceryl transferase" + /protein_id="ACL74855.1" + /db_xref="InterPro:IPR001640" + /translation="MDSTLLRFPELGWSFDVPRVAFNIFGKPIYWYGIIIAAAFLICV + LWAMKDSTKYDLVPDTIIDLMLFAAPAAIICARIYYVIFSWSEYSDNLIDILNLRKGG + LAVYGGIIGAIVAAYFVARYKRIPTMKLFDFAIPYVALGQAIGRWGNFFNQEAFGTNT + TLPWGMTSPTINAYLTNKAASIQETVGITVNPELPVHPTFLYESLWNIAVFAFLMWMR + KRKKFSGEIFCLYFITYSIGRAFIEGLRTDSLMFGNLRISQFLSIILVIVFVILVVVL + RNKAKNAVDQEEVEVGQSAYAKVLKYMEEEQEVETNEHSSQKMQESDSTQEIPQEPAE + RGNQQESSENPQEEDNNKLSDSQ" + gene 543306..544442 + /locus_tag="Ccel_0474" + CDS 543306..544442 + /locus_tag="Ccel_0474" + /inference="protein motif:TFAM:TIGR02210" + /note="TIGRFAM: rod shape-determining protein RodA; + PFAM: cell cycle protein; + KEGG: cth:Cthe_0983 cell cycle protein" + /codon_start=1 + /transl_table=11 + /product="rod shape-determining protein RodA" + /protein_id="ACL74856.1" + /db_xref="InterPro:IPR001182" + /db_xref="InterPro:IPR011923" + /translation="MYFVEKSQASNPYKRFDYVLFISVLLLSAIGLIVLSSAVRTRPG + MLKSQILAMIMGVALCLILSIIDYKDLKVLSLFIFFATMALMVLVLFLGTGEELGNKN + WIKIAGFSIQPSEYAKIAYIILVSVFLERIKDSTEKNKSDIIKFIVYSGVAVGFVLLQ + KDLGTALVFGFIFLIFIYIAGIPYRYIFILGGMLLLSLPFVWVYILNGYRRERILTFI + SPDRDPQGTGFNVIQSKIAVGSGQLFGQGYGNGLQTQSRNVPVNESDFIFSVVGEEFG + FIGGIIIIILGLIILLRCIYIAKNSSDTYGSFLVMGVTGMLGFHFIENIGMSIGLLPV + TGLPLPFVSQGGTAVLANYIAIGIVLSVSSRRKKSLFSTKDKRR" + gene 544670..545101 + /locus_tag="Ccel_0475" + CDS 544670..545101 + /locus_tag="Ccel_0475" + /inference="protein motif:TFAM:TIGR00242" + /note="TIGRFAM: MraZ protein; + PFAM: protein of unknown function UPF0040; + KEGG: cth:Cthe_0982 MraZ protein" + /codon_start=1 + /transl_table=11 + /product="MraZ protein" + /protein_id="ACL74857.1" + /db_xref="InterPro:IPR003444" + /translation="MFYGEYQHTIDPKGRAIVPSKFREGLGEKFILTKGLDGCLFAYS + SEEWTSLENKLKSLPFTDKDVRAFIRFFFSGATECEVDKQGRILIPQNLREYAALEKD + TYIIGVSSRVEIWDKTAWEAYNSDENISADKIAEKMALLGI" + gene 545124..546065 + /locus_tag="Ccel_0476" + CDS 545124..546065 + /locus_tag="Ccel_0476" + /inference="protein motif:TFAM:TIGR00006" + /note="TIGRFAM: S-adenosyl-methyltransferase MraW; + PFAM: methyltransferase; + KEGG: cth:Cthe_0981 S-adenosyl-methyltransferase MraW" + /codon_start=1 + /transl_table=11 + /product="S-adenosyl-methyltransferase MraW" + /protein_id="ACL74858.1" + /db_xref="InterPro:IPR002903" + /translation="MEFKHTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLG + EKGCLVGLDQDSFAVETSIKRLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILL + DLGVSSHQLDEASRGFSYQHDAPLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEE + KWASRIAKFITEARQNEPVETTYDLVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNN + ELGILNKTIEDCVDLLKRGGRLCIITFHSLEDRIVKMQYNKMVNPCTCPPAFPVCACG + KKPKAVLINKKPIVSDIRELDKNPRARSAKLRVLQKI" + gene 546237..546728 + /locus_tag="Ccel_0477" + CDS 546237..546728 + /locus_tag="Ccel_0477" + /inference="similar to AA sequence:KEGG:Cthe_0980" + /note="KEGG: cth:Cthe_0980 cell division protein FtsL" + /codon_start=1 + /transl_table=11 + /product="cell division protein FtsL" + /protein_id="ACL74859.1" + /translation="MFKVAETKNDYVYGSLAEKIKYDPYEENAILKSKKIARDNSKIK + VRIIFNIFLVFAMFIVVMLRYAQISQINYDINIMKSEYTKIQNENQLLSIDIQNAMDL + KNIRHIAETKLDMHKPNKSQIVYVSIPKKDVTITAHKEQSKLTVLFNIVNKSLNKFLN + IIN" + gene 546888..549092 + /locus_tag="Ccel_0478" + CDS 546888..549092 + /locus_tag="Ccel_0478" + /inference="protein motif:PFAM:PF00905" + /note="PFAM: penicillin-binding protein transpeptidase; + Penicillin-binding protein dimerisation domain; PASTA + domain containing protein; + KEGG: cth:Cthe_0979 peptidoglycan glycosyltransferase" + /codon_start=1 + /transl_table=11 + /product="penicillin-binding protein transpeptidase" + /protein_id="ACL74860.1" + /db_xref="InterPro:IPR001460" + /db_xref="InterPro:IPR005311" + /db_xref="InterPro:IPR005543" + /translation="MAGVNLKIKKRLLFILCVFTIMTLILVLRIAWIQIYSGKEYQEF + AYNQQTKNRTISAKRGTIYDRNMKPLAVSGSVDTVSASPQEISKQKLDIDKISSELAN + ILEMDKETVKKKLTKNSQYEIIKQKIDREIGNKVREWKSKDKISGIYIDEDTKRFYPN + RNLAAHVIGFTNIDNDGLDGVERMMEKYLKGVPGKILSETDASGMALSMSDEKFIQPQ + DGNDVILTIDETIQYFAEKALEKAISDNNVLNGATAIVMDPRNGEILALASKPDFDLN + NPRGVPKGKDPETWTGKSKEDVEYLQQTVWRNKAVVDTYEPGSTFKPVTAAAGLEEGA + ITPDTQVTDATVKVGGWNINCWKPNAHLHETFREGVYNSCNPVFVRLSQKLGVPLFFK + YVKAFGFYDKTGIDLPGEARGIMFTNPTEVNMATASFGQRFQITPIQLVQAYGAIANG + GDLITPHVVKEVVDETGSVIKKYEPNVVRRVISRQTSDTLKSILYGVVDVGTGKNAKI + PGYKIGGKTGTSETIMDPKLLKLNIVGKNKRYIVSFSAIAPTDNPSLCVLVVLDYPDV + YNPGGGMLVAPVVGKLIDDILSYKGVEKEYTEQDKKMLLQEVQVPNVKGKTVEEAVKL + LKESKLEYKIEGSDTDKKAIVQDQTPKSSALLHERSIVVLYTYKPQEEAMVKVPDVKN + KPVYDATQAFKKLGLNIRVNGTGTAVSQSMDAGTKVKKGTVIEVIFRNVVSD" + gene 549160..550620 + /locus_tag="Ccel_0479" + CDS 549160..550620 + /locus_tag="Ccel_0479" + /inference="protein motif:TFAM:TIGR01085" + /note="TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; + PFAM: cytoplasmic peptidoglycan synthetase domain protein; + Mur ligase middle domain protein; + KEGG: cth:Cthe_0978 + UDP-N-acetylmuramoylalanyl-D-glutamate--2, + 6-diaminopimelate ligase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylmuramyl-tripeptide synthetase" + /protein_id="ACL74861.1" + /db_xref="InterPro:IPR000713" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR005761" + /db_xref="InterPro:IPR013221" + /translation="MKLRELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEG + TVVDGHKYINDAIENGTKAFLVQKHVVVPEGITTIEIDDTRFGLAAVSDAFFGHPSSK + FNLIGITGTKGKTTTTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQ + SLFSDMVEKKVDSTVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYF + NAKAKLFKMCRKAVINIDSEHGRKMAELAKCKVFTYGLSDKADIWASDIVKKTGHTYF + TLNSPWGSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVTVPGRMESV + KTGGNYSVLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGN + IADFTIITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDII + ILAGKGHETYQQFAEKTIHFDEREVVNELLIELGRR" + gene 550625..552004 + /locus_tag="Ccel_0480" + CDS 550625..552004 + /locus_tag="Ccel_0480" + /inference="protein motif:TFAM:TIGR01143" + /note="TIGRFAM: + UDP-N-acetylmuramoylalanyl-D-glutamyl-2, + 6-diaminopimelate/D-alanyl-D-alanyl ligase; + PFAM: cytoplasmic peptidoglycan synthetase domain protein; + Mur ligase middle domain protein; + KEGG: cth:Cthe_0977 + UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine + ligase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylmuramoylalanyl-D-glutamyl-2, + 6-diaminopimelate/D-alanyl-D-alanyl ligase" + /protein_id="ACL74862.1" + /db_xref="InterPro:IPR000713" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR005863" + /db_xref="InterPro:IPR013221" + /translation="MISFNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIP + LIGEKFDGHDYIEQCFNAGATVCLTSKQIPTVTGCTAILVDDTAKALRDLAAWYRRKF + DIPVVGITGSVGKTSTKDMVSCVLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAV + IEMGMSGFGEISRLTAIARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGL + VVLNGDDPLLSSLKGKLSFRTVFYGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNV + EIPVPGIHNVYNALAAIAAGIEMKIPMEIIINGIKQFSPGNMRQSIINHNGIKIINDA + YNASPQSMQAAINVLQEISSESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLV + TVGLDSRMISQAVADYGNSQTEIHHFENNKEALKYILEIVMPGDYILIKGSRGMKMEE + IADGIMKSE" + gene 552030..553013 + /locus_tag="Ccel_0481" + CDS 552030..553013 + /locus_tag="Ccel_0481" + /inference="protein motif:TFAM:TIGR00445" + /note="TIGRFAM: + phospho-N-acetylmuramoyl-pentapeptide-transferase; + PFAM: glycosyl transferase family 4; + phospho-N-acetylmuramoyl-pentapeptide transferase; + KEGG: cth:Cthe_0976 + phospho-N-acetylmuramoyl-pentapeptide-transferase" + /codon_start=1 + /transl_table=11 + /product="phospho-N-acetylmuramoyl-pentapeptide- + transferase" + /protein_id="ACL74863.1" + /db_xref="InterPro:IPR000715" + /db_xref="InterPro:IPR003524" + /translation="MLTFSLTSEHIIAFAASFVLALIAGPILIPFLRRLKFGQTVRDD + GPQTHLKKMGTPTIGGLIFIIPLTLTSIYFYQSYPQIIPILMSTLGFAAVGFIDDFIK + VVKKRKDGLFAGQKTFFQLIVCVSFAFYVMRYTEAGSSIVIPFTNIIIQPWIYFVFII + LFMYFFSNAVNITDGLDGLCAGVTLVVAIFFTIVSLTNGEWGYIKVFSAAIAGGCLGF + LAFNIHPAKVFMGDTGSLALGGALTSIAVMMRMPLIIFLVGGIYLIEALSVILQVASF + KLTGKRIFKMAPIHHHFELKGWKETKVVAVFIIATVLLAIASLIVIGSDIF" + gene 553083..554195 + /locus_tag="Ccel_0482" + CDS 553083..554195 + /locus_tag="Ccel_0482" + /inference="protein motif:TFAM:TIGR02614" + /note="TIGRFAM: cell division protein FtsW; + PFAM: cell cycle protein; + KEGG: cth:Cthe_0975 stage V sporulation protein E" + /codon_start=1 + /transl_table=11 + /product="cell division protein FtsW" + /protein_id="ACL74864.1" + /db_xref="InterPro:IPR001182" + /db_xref="InterPro:IPR013437" + /translation="MRNKNTKPFDFWIFAAVILLLSLGTIMVFSSSYYFSTQRTGESF + MLLRPQLIYMALSIAVLVGTMNFDYRKWGKISPIILMISIGLLILVLIPGIGKVQNGA + QRWLGVGTKTVQPSELAKLGIIMFLSFSLSKRKDVLQSFTKGLLPYILLIGFVAGLVV + VEPHLSGALIIVITSFIILFCAGAKISHFVAMAIPGAVAVAGAILMAAYRMNRVKAWL + HPFDFYKDEGWQTVQSLLAIGSGGLFGRGLGQSMQKYLWIPEPYNDYIFAVLSEELGF + VGALVVMLLFLIFIWRGIKVAMNAPDTFGSLMATGITCLIGLQFLFNVAVVTNFIPPT + GISLPFFSYGGTSLVFLMFGVGILLNISRYSNYERF" + gene 554207..555301 + /locus_tag="Ccel_0483" + CDS 554207..555301 + /locus_tag="Ccel_0483" + /inference="protein motif:TFAM:TIGR01133" + /note="TIGRFAM: + UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) + pyrophosphoryl-undecaprenol N-acetylglucosamine + transferase; + PFAM: glycosyl transferase family 28; Glycosyltransferase + 28 domain; + KEGG: cth:Cthe_0974 N-acetylglucosaminyl transferase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylglucosamine--N-acetylmuramyl- + (pentapeptide) pyrophosphoryl-undecaprenol + N-acetylglucosamine transferase" + /protein_id="ACL74865.1" + /db_xref="InterPro:IPR004276" + /db_xref="InterPro:IPR006009" + /db_xref="InterPro:IPR007235" + /translation="MKVLIAGGGTGGHINPGLAIAKYIKQKEAEADITFVGTKKGLET + KLVPREGYPLETITVRGFKRKLSLDTLIAIKELIQSFFQASRLLKRIKPDVVIGTGGY + VCGPVLYMAAKKGIPTLIHESNAFPGVTNRLLERYVSYVAISFKDAEKYFKNKKKLVL + TGNPVREELLNSGRDKVASNLGIVEGKPLIVAMGGSRGARRINETIADMLNNYFKGEF + NLIFATGEAQFDDISSTVKIDEKYRDMVKVVPYIYNVDQVYVASDLMICRAGAITISE + LQVMGIPSILIPSPYVTANHQEHNARSLERDGGAVVILENELNADLLYKQICSLIFNK + DVLKKMSKNTSKNRVTDSAEKIYHLIKEII" + gene complement(555338..555532) + /locus_tag="Ccel_0484" + CDS complement(555338..555532) + /locus_tag="Ccel_0484" + /inference="protein motif:PFAM:PF00269" + /note="PFAM: small acid-soluble spore protein alpha/beta + type; + KEGG: cth:Cthe_3176 small acid-soluble spore protein, + alpha/beta type" + /codon_start=1 + /transl_table=11 + /product="small acid-soluble spore protein alpha/beta + type" + /protein_id="ACL74866.1" + /db_xref="InterPro:IPR001448" + /translation="MANNRSGGRSSGAFDNMKYEVAREVGVNLKEGYNGDITSREAGK + IGGTIVKKVFSSFREQNPQA" + gene 555876..557252 + /locus_tag="Ccel_0485" + CDS 555876..557252 + /locus_tag="Ccel_0485" + /inference="protein motif:TFAM:TIGR00801" + /note="TIGRFAM: uracil-xanthine permease; + PFAM: Xanthine/uracil/vitamin C permease; + KEGG: drm:Dred_1317 uracil transporter" + /codon_start=1 + /transl_table=11 + /product="uracil-xanthine permease" + /protein_id="ACL74867.1" + /db_xref="InterPro:IPR006042" + /db_xref="InterPro:IPR006043" + /db_xref="InterPro:IPR016160" + /translation="MKKEIPVIEVDQKVPFLKAIPLSLQHLFAMFGASVLVPFLFNGY + AKSDFLKNVLNTTVDKLTPDQLIQYNNIQVIDPALVLLLNGIGTLIYLLLCKGKAPAF + LGSSFAFLSPTASIIASSTNYNENFSKALGGYIVCGLIFAIVALIIGKVGTSWLDIVL + PPAAMGPIVALIGLELSGNAAKMAGLLPNDKGAFDTKTIIISLVTLAIVIIGNLCFRG + FLSVIPVLVAVVAGYGLAAAMGYVDTTPFTSAQWFSVPTFVTPSFSFNAMLILAPAAL + VVLSEHIGHLFVTSNIVGRDLTKDPGLHRSLLGDGLSTMLSGLCGSCPTTTYGENMGV + MAITRVYSVWVIGGAGVISIIIAFIGKLSGIISSIPEPVMGGVSLLLFGVIAASGIRM + IVEAKIDYSKSKNLILTAVVFVIGISGTTVKLPGNVELKGMVLATLVGIVISTLFYIL + EKLKLTND" + gene complement(557333..558523) + /locus_tag="Ccel_0486" + CDS complement(557333..558523) + /locus_tag="Ccel_0486" + /inference="protein motif:PFAM:PF06925" + /note="PFAM: Monogalactosyldiacylglycerol synthase; + KEGG: cth:Cthe_3177 monogalactosyldiacylglycerol synthase" + /codon_start=1 + /transl_table=11 + /product="Monogalactosyldiacylglycerol synthase" + /protein_id="ACL74868.1" + /db_xref="InterPro:IPR009695" + /translation="MKNVIIISSDYTGHGHKSISEALQEQFCIHEDVCLNIIDGFELG + GNMWIKVGKSYGMVTRNAKEIWKLAWKISKRNQTFIHEFTELTIRENFIKLLRKLKPD + LILSVHPVFNTPIINILKEYKVNIPFATFVADLVSISPMWADSRADCIICPTEEAKQR + CIGFGVPEHKLEVIGFPVRSRFTQHVSQNMSHNDYTLDRPLECLIMSGGEGSGDMNNV + AKILLDNFNCNIRIIAGRNESLKDKLEKTISQQYPGRVEVYGYVTNIQDYMLKSDIAF + TRGSPNVMMEAVACNVPLIITGALPGQEQENPDFAVNNNLGIYCDDLSSLAAVVSGLL + ADNAKRLNEIKQAQREYFDHAAAGKIVDHVLSLIKNEVFIYPSELRRKKKFLTLKLQS + RKSS" + gene 558764..559969 + /locus_tag="Ccel_0487" + CDS 558764..559969 + /locus_tag="Ccel_0487" + /inference="protein motif:PFAM:PF00768" + /note="PFAM: peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1; Penicillin-binding protein 5 domain + protein; + KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala + carboxypeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1" + /protein_id="ACL74869.1" + /db_xref="InterPro:IPR001967" + /db_xref="InterPro:IPR012907" + /translation="MKKTARVVLIVLIILSNLLCANMVKGDDTNDDGPITNDILKSES + WEVAGNQAPRVSAGAAIVMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDGE + DVIVSKKAASIWGSRVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAE + MMNRKAAEIGATNTNFVTPHGLDAPQHYSTPYDLALITQYALKNKKFCKIVSTKSSTF + EGNPINNTNEMLSLYPGADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRA + QSSKILLDYAFGNYKIYEYLKKGGQISQVGIHKGLSNAVGICSDKDISIPLKKDEADR + IKVEYDIPKTLEAPIQKGCRIGTVNYVLDGKVLASTDVKSTATIKRKDFYYYFDRIFK + TWARLVHQH" + gene 560024..561751 + /locus_tag="Ccel_0488" + CDS 560024..561751 + /locus_tag="Ccel_0488" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: cobalamin B12-binding domain protein; Radical + SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cth:Cthe_3186 radical SAM family protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74870.1" + /db_xref="InterPro:IPR006158" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKTLLVGINSKYIHTCLAIWYLKASITENSTIAVREFTINDIQD + NILSEIYREKPGIIAFSCYIWNVGLVLSISKEIKKLLPDCRIILGGPEVSYSSKKVME + ENQYIDFVISGEGEDVFPALLKDLCDGTENYKTLPGLAYRMSGSIICNEGFNLVYELD + RIPSPYTDELMKTTLNRIVYYESSRGCPFSCSYCISSTFNGVRFFSLERVKRDIYRIL + EYKPRLIKFVDRTFNCHKERAKEILRFLASLNCETVFHFEAAADLFDSEMLHILRKAP + KGRIQLEIGIQTINTQTLKEIDRITDIDLLTENVKKILSGGNIHVHLDLIAGLPYEDF + KSFKKSFNHVYGLKPHQLQLGFLKMLKGSRIRKNSQKHSFYFRDNAPYEVLKNKYISY + DEILLLKDVEETFERYYNSNRFKNSLNFLEELFFEGDSFAMYEKLAAYCRKNGFLNRP + VSYKENINILYSFLKENCKSNINCEKFRQYMVLDFLSTDSSGAIPECLKREEDFLSPV + EIHSMLRDEELIDRYLPQYKGTQAKNILKRVFFVKLNLLLPPDEALLFDYSAKDAVSG + KYRNVSVKI" + gene 561965..563899 + /locus_tag="Ccel_0489" + CDS 561965..563899 + /locus_tag="Ccel_0489" + /inference="protein motif:PFAM:PF08298" + /note="PFAM: PrkA serine kinase; PrkA AAA domain protein; + KEGG: cth:Cthe_1205 putative serine protein kinase, PrkA" + /codon_start=1 + /transl_table=11 + /product="putative serine protein kinase, PrkA" + /protein_id="ACL74871.1" + /db_xref="InterPro:IPR010650" + /db_xref="InterPro:IPR013153" + /translation="MTRPEFDFSELIKKDREEHVRKQFEGTFLDYLQIVKSNPEVAIL + SHQRLYELISSKGVEAVKTEENPRLRRIYGNDVIKKYTFFEDDFFGIDKTIMKIVRYF + HSAAMAGEEARQVLYLVGPVGAGKSSLMEALKKALEAARHIYALKDCPMREEPLHLIP + KHLRKDFEEKLNIKIEGDLCPVCRYRLRNEYNEEYEKFPVTSTGFSIRSRKGIGVVPP + VDPNNQDTSILTGSVDISKIDLYPEDDPRVLSLNGAFNAGNRGIVEFIEVFKNETEYL + HTMITATQEKSIPSPGKGAMIYFDGVILAHSNEAEWNKFKSDHTNEAIMDRIVRIEVP + YCLELNEEIKIYEKMLSKSKFKAHIAPHTIEIASMFAILTRLSPSNKVDPLTKLKIYN + GEEILEKGMTRKIDIFELREEAPREGMTGISTRFIMKALDTALSESENDCINPIAVME + ALIKSVKELGIGDDEKERYLRLIYDSVKKEYNKILEKEVTKAFIHGYREQAESLFNNY + LDHAEAFVNKTKIKDKNTGEELEPDEKFMRSIEEQIGISDTAVKGFRSDVTAYMFFVM + RNGGSLDYTSYEPLKDAIEKKLTASVRDLSRIITQAKVRDKEQTQKYNTMVEEMKKNG + YCDHCCNVILKYAANNLWKD" + gene 563915..565111 + /locus_tag="Ccel_0490" + CDS 563915..565111 + /locus_tag="Ccel_0490" + /inference="protein motif:TFAM:TIGR02877" + /note="TIGRFAM: sporulation protein YhbH; + PFAM: protein of unknown function DUF444; + KEGG: cth:Cthe_1204 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YhbH" + /protein_id="ACL74872.1" + /db_xref="InterPro:IPR006698" + /db_xref="InterPro:IPR014230" + /translation="MAIFRDCSNIGKDRSAEDRRRHRELVEDSIKKNLGSIIAEESII + GKSKDKKIKIPIKGIKEFQFIYGKSKPGVGAGDGNEKRGDKFPGDSQEGKGKGNAGNS + EGEEVYETEITIEEVIKYLFDDMNLPDIAKKQLSQLEEKSYRKLGYQHKGIPPRLAKK + RSVIEKIKRKQASKRSEDGEDITHDKEYGKERFPFIEEDLRYYRIKEDNKRDYNAVVL + CIMDVSGSMDQTKKYLARSFYFLLYQFLRLKYANVDVVFIAHTTTAKEVNEREFFHRG + ESGGTYISSGYEKALEIISERYSPTNWNIYAFHCSDGDNWSEDNRKAVESANKLCEVC + NLFGYGEIVPGYYNIGSTIKNEFLNKIKSKNFAAININKKEDVLPALKKLLDKASDKD + EKTGLK" + gene 565145..566533 + /locus_tag="Ccel_0491" + CDS 565145..566533 + /locus_tag="Ccel_0491" + /inference="protein motif:PFAM:PF04293" + /note="PFAM: SpoVR family protein; + KEGG: cth:Cthe_1203 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SpoVR family protein" + /protein_id="ACL74873.1" + /db_xref="InterPro:IPR007390" + /translation="MADFSLKELEYWNERIEQIAVDSGLNFYNQEFEIINYEDMIGYE + SYVGMPSHYPHWSYGKSYERIKTLHKYNLTGLPYEMVINSNPCIAYLMKDNSLLVQIL + TIAHVYAHNDFFKNNRLFKQGTKAEYSVETFKNHANRIRDYISDPSIGYAKVEKILNA + AHAVKLQTERIIDFRNKIEEKNKSKSALAENKSDFPNLEKYSQNEKKDDTEAGRQEIK + IPEEPQEDILNFITEYGRLQDWEKDILSIVREEAQYFIPQIETKIMNEGWASFWHYTI + LTKLELPQSLHFEFLRKHNEVIRPLKSSINPYYIGFKIIENLYNTQGKDKIFEVRENE + RDQSFIRRYLTQELCGEMNLFEYIAAGNDYMISEVSDEEGWKQVRDTLCNTVGIGSIP + TIKVIEWSPKENTLLLEHEFDGRELELSYAYETLKHLVDLWKGKVVLTTHLEEKKKNI + ACDEMKRISLYT" + gene 566657..568561 + /locus_tag="Ccel_0492" + CDS 566657..568561 + /locus_tag="Ccel_0492" + /inference="protein motif:PFAM:PF00183" + /note="PFAM: heat shock protein Hsp90; ATP-binding region + ATPase domain protein; + KEGG: cth:Cthe_0550 heat shock protein 90" + /codon_start=1 + /transl_table=11 + /product="heat shock protein Hsp90" + /protein_id="ACL74874.1" + /db_xref="InterPro:IPR001404" + /db_xref="InterPro:IPR003594" + /translation="MKHESGSISINTENIFPIIKKWLYSEKDIFIRELVSNASDAISK + MKKLDAIGEAELPEGNKFEIKVVVNKNDKTIKVIDNGLGMTEEEVKKYINQIAFSGAV + DFLEKYKDKSDDGQIIGHFGLGFYSAFMVSQRVQIDTLSYQKDAAAVRWVSDGGTEFE + MSDSDRNERGTTITLYLSDDGLEFTDEYKMRTTLEKYFAFLPYELYLEDSAKEEEKKE + ENKEEPKEGDDQANAEPKKPEPLNDTKPLWLKNPKDCTDEEYKQFYTKVFHDFNEPLF + WIHLNMDYPFNLKGILYFPKLKHEFETMEGQIKLYYNQVFVADNIKEVIPEFLLLLKG + VLDCPDLPLNVSRSFLQNDGYVNKISTHITKKVADKLTSLFENDRENYNKYWDDINPF + VKYGCVREEKFYDRVKDALIFKSTKGGYTTLKEYLENNKEKHENKVFYVSDEKQQAQY + IKLFNENGMEAVILTNMIDNHFMSLLESKGSGLQFNRIDADISASMKQENTGIPEDNV + SYLENLFKETVNDEKLKIQVESLKNETIPAVVLLSEQSRRMQEMSKMFGGMDMGHMFP + KEQTLVLNSSNKLVKALLDLKDKDERKDDVKLVSEHIYDLAMMSHQTLEPDAMAKFIQ + RSNEILMKVL" + gene 568831..570306 + /locus_tag="Ccel_0493" + CDS 568831..570306 + /locus_tag="Ccel_0493" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: lsp:Bsph_3073 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74875.1" + /db_xref="InterPro:IPR004089" + /translation="MKKNLSISKKSDFLNLVIIWTAIVPIILISLYSGTDFAITIIPP + IVLGIVVSVVYFIHISSNIKAFIYAIIILLIAISGFIFTANDISNHYILFASISMITI + YFNKRLVFIFGIIINIILISFYIIFPEAIIGKLGYWTNFVYEIIYINCSLVCLYCLTK + WGNELVLQSKSKEAETEILLNKLRKTMDKVETSTKFLNENIKSVNESIESSEAASSNI + TKAMHEMASATQQQAASINDINFLMNDTVNDVKNTKSISESIYNDSQNMTKEVQNGIS + KVDEMENQIKTIEQAVSISHTTVIDLQKKMHRITDFLENINQIAEQTNLLALNASIEA + ARAGEQGKGFAVVADEVRKLAEGSTKIVKDINVVIQDISLQTETAVESSVNGYNAVKE + GEKLTNDVSTYFTEFKKVFNKTNQSLIDEAKMIEKISDSFIHIKEQVENVACISEENA + ASTQVVVSTVQTANSGIVNIGQSIKDINELSSELSSMVQNI" + gene complement(570422..572080) + /locus_tag="Ccel_0494" + CDS complement(570422..572080) + /locus_tag="Ccel_0494" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: cth:Cthe_0551 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL74876.1" + /db_xref="InterPro:IPR000873" + /translation="MLEKYLSQVDFTSYEDFYENFKIKVPENFNFAYDVVDEYAKTDP + DKVAIIWCDKSGAETTFTFGQLKEYSDKTANFFQSLGIKRGDPVMLILKRRYEFWFCI + LALHKLGAVTIPATHLLTSKDIVYRANAADIKMIVCVNEPEVIKHIEDSESKTPTVKY + KALINGAKDGWLDFSSGIQEASSQFERPRGDLGSHNSDISLLYFTSGTTGMPKMVQHD + YEYPLGHILTASYWQNVSEGGLHLTVADTGWAKAVWGKIYGQWLAGCAVFVYDFDKFV + PKELLEVISKYNVTSFCAPPTIYRFFIKEDLSKFDLSSLKYCTVAGEPLNPEVYSQFY + KATGIKLMEAFGQTELTVTLSTFPWMEPKPGSMGKPSPGYDIDLIDENGNSCQDGEEG + QIVVRTSKRKPAGMFGGYYRDEALTKSVWHDGVYYTGDMAWRDEDGYYWFVGRADDVI + KSSGYRIGPFEVESALLEHPAVLECAITAVPDLIRGQIVKATVILAKNYNPSDELVKE + LQDHVKKVTAPYKYPRIIEFVSELPKTISGKIRRVEIRQTDDNK" + gene complement(572100..572654) + /locus_tag="Ccel_0495" + CDS complement(572100..572654) + /locus_tag="Ccel_0495" + /inference="protein motif:PFAM:PF07883" + /note="PFAM: helix-turn-helix domain protein; Cupin 2 + conserved barrel domain protein; + KEGG: cth:Cthe_0552 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL74877.1" + /db_xref="InterPro:IPR001387" + /db_xref="InterPro:IPR013096" + /translation="MSEQIKLIASRIKELREISEISVEALAAELKITEESYRSYESGE + TDIPVSFLYQIANKFNVELSAIITGDAPRLHTYQLVRDSKGVSVERREHYKYHSLAYN + FVGKRAEPFIVTVEPETADSPLHFNSHKGQEFNYIIEGTLKIIINGRELIMNEGDSVY + FDSSASHAMKAMNGKKARFLAIIL" + gene 572993..574237 + /locus_tag="Ccel_0496" + CDS 572993..574237 + /locus_tag="Ccel_0496" + /inference="protein motif:PFAM:PF00672" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cac:CAC1600 methyl-accepting chemotaxis-like protein + (chemotaxis sensory transducer)" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL74878.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /translation="MSIGKKILFIVIGCTIIVGGGTALYIIWDFPVYTITAMFCIFAV + AIGVWLTFSLTVPIKVLSRVVERTANFDLSHDKTYNQIKGRKDEIGFLARNLSTMRGS + LREILGLMGDASKKVIENSQQVEQMTEDLKEKADDTLSTTEHISASMQESAATSHQIN + FSTQEIKKNINLIAQNSEEGAQTANEVSIKASEIKESAVLSAQNANNVYLEVKQQLQG + AIDKAGEVSHIDQLAQAILQITEQTNLLSLNAAIEAARAGEAGKGFAVVADEIRKLAD + QSSKTAADIKNIVKTVNESVDALTDSAGVLLEFVDKEVLNDYKKLIDTSEQYYTDSAQ + FSKIMNEFNDSAKAMNSSIANIVNALEQVTSSVNESAEGVEVITVKTAEIVGHFANVK + VSTQDNLIASEKLKDQVSKFTL" + gene 574444..575493 + /locus_tag="Ccel_0497" + CDS 574444..575493 + /locus_tag="Ccel_0497" + /inference="protein motif:TFAM:TIGR00277" + /note="KEGG: cac:CAC3650 HD-GYP domain-containing protein; + TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL74879.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /translation="MEREYVKVSKDIIDSILADDVYTRGGNMIVPSDTFISEHIIKKL + NAFRVERVTIYRSHSILGNEYLSDKSISESQKQYIEDVNATKSILRGLASGKELDMDN + VKTITDSVYERLGDVGSIIECINSIKVADQYTYSHSVNVAFYAMLLGKWMNLSKLQIK + DLAMAGLLHDIGKTKISAEIINKKGPLNENEFEVIKRHPIYGYDIIKGFSDIAIDIKR + AVILHHEKENGTGYPFGIQGNKKNLYAKIITAADIFDAITSERVYKEKQTPFSAFKEM + EKIGYDIVDPMVMGVMFDNMPRYYIGSKVKLDNGEIGEVVYVPSSCAYAPVVKIKEDF + VDFAKEKEALISELL" + gene complement(575495..576373) + /locus_tag="Ccel_0498" + CDS complement(575495..576373) + /locus_tag="Ccel_0498" + /inference="protein motif:PFAM:PF03466" + /note="PFAM: regulatory protein LysR; LysR + substrate-binding; + KEGG: cth:Cthe_0553 LysR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LysR family" + /protein_id="ACL74880.1" + /db_xref="InterPro:IPR000847" + /db_xref="InterPro:IPR005119" + /translation="MDINFELYKIFYHCAENKSFSAAARKLFITQSAVSQSVKSLEKQ + LGITLFHRKSRNIQLTNEGELLFSYVSQAYNFLKTAEEKLKEFEGLTAGEIRIGVSDS + ICKYFVMPYIKKFGQMYPNIMVKVINRTTPQLLDVLKGGLIDIAISTLPVNEDTFNAA + PFISVQDIFVASDKFKELKGREISLQELNGYPLVLLQSDSSTRKSVDRFFQNQGLTCS + PEIELESLDLLVEFAKIGTGIACVLKESAVDAIKSGDLFQIKSKEPLPPRSIGVVTMK + NVVLSKAVKTFISELI" + gene 576490..580260 + /locus_tag="Ccel_0499" + CDS 576490..580260 + /locus_tag="Ccel_0499" + /inference="protein motif:TFAM:TIGR01857" + /note="TIGRFAM: phosphoribosylformylglycinamidine + synthase; + PFAM: AIR synthase related protein domain protein; + KEGG: cth:Cthe_0554 phosphoribosylformylglycinamidine + synthase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylformylglycinamidine synthase" + /protein_id="ACL74881.1" + /db_xref="InterPro:IPR010141" + /db_xref="InterPro:IPR010918" + /translation="MKSTVKRLFVVKKHPYDVEAQGLLKDFRETLGIESLESLKIVNR + YDVEGISDSEYQLARNTIFSEPTVDSAYDEEFKIPSNCRAFAVEFLPGQYDQRADSAA + QCIQLLTQGDRPEINTARVIVLQGSINEKEFNSIKEYYINPVESREAKMEKPETLKAE + VEQPEDVATLEGFTSMNEKQLSELLREMGFAMSFDDIIFCQNYFKNSEKRDPSVTEMR + MIDTYWSDHCRHTTFLTCIDSVKFEKGRFTEIIEETYKDYIEKREDIYKDRNDKDICL + MDIALMAMKALKKQGKLNDLDLSDEINACSIVVNADINGKNEEWLVMFKNETHNHPTE + IEPFGGAATCLGGAIRDPLSGRVYVYQAMRVTGSGDPRTKLEDTIQGKLPQKKITTGA + ASGYSSYGNQIGLATGQVAEIYDEGYVAKRMEIGAVIGAAPRKNVVRMQPEAGDKIIL + LGGRTGRDGCGGATGSSKAHTEESLITCGAEVQKGNAPTERKIQRLFRNPNASTLIKR + CNDFGAGGVSVAIGELADGLEINLDAVPKKYEGLDGTELAISESQERMAVVVEACDVE + KFIGFAAEENLEAVVVAEVKAEPRLKMSWRGKQIVDLSREFLNSNGAKQRIDIEISAP + DEETYFDKCNEIEIDNLKEYWIKNLQNLNRCSQKGLVERFDSTIGANTVLMPFGGKTQ + LTPAEGMAAKLPLMEGDTTTGTLMSFGYNPDIAKWSPFHGAVYAVVESIAKIVAMGGD + YSKARLTLQEYFEKPGKDAKRWGKPLSALLGAYYAQMKLGTAAIGGKDSMSGSFMDMD + VPPTLVSFAVNTVNVDNVISNEFKGVGSRVVLLKVKLDDNILPDFDELDRVYSRVNKL + AKEKAILSASSVRSGGIAEIISKMAFGNMIGFTLKGIADVSLLFKPFYGSLILEIPEN + IDLTKALEGLRYTVLGVTTANSEININGTVIDLGELSHKWQEPLEKVFPTRVSEVQGT + TVQYNFEAKTKAKPSVKIAKPRVFIPVFPGTNCEYDTKKVFENAGGIVETMVIKNMTH + KDIEESIKRMEKLIDNSQIIMIPGGFSAGDEPEGSGKFIATAFRNPVVSEAVMKLLKN + RDGLVLGICNGFQALIKLGLLPFGEIREIDEVCPTLTFNTIGRHQSCLVKTRIASNLS + PWLNNVKVGDIHTIAISHGEGRFTANSEVMAGLEANGQIATQYVDLNGKPTLDISFNP + NGSINAVEGITSPDGRVFGKMGHSERIGTNLYKNVPGEKDQQLFRAGIEYFG" + gene 580364..581164 + /locus_tag="Ccel_0500" + CDS 580364..581164 + /locus_tag="Ccel_0500" + /inference="protein motif:PFAM:PF01261" + /note="PFAM: Xylose isomerase domain protein TIM barrel; + KEGG: cth:Cthe_0234 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="Xylose isomerase domain protein TIM barrel" + /protein_id="ACL74882.1" + /db_xref="InterPro:IPR012307" + /translation="MKISFSTLGCPGWSWEDMLSTAKDIGFDGVEVRGIGNELYVPKV + KHFSNDNIELTKKKLSKIGLEIPCLTSACFLFDKENIDKHIKEGIDYINLAEKLGTPY + IRVLGDAQPQPSDIDIDFVVKNLKNLAAAAKEKGVKLLVETNGVFADSKVMKSLLDKV + DSDSVGVLWDIHHPVRFFNESLEYTYGNLKEHICFVHIKDSIMMDGTVKYKMTGYGDI + PVKQAVELLNQNGYNGYVSLEWVKRWCLDLEEPGIVFAHFAGYMKSII" + gene 581303..582103 + /locus_tag="Ccel_0501" + CDS 581303..582103 + /locus_tag="Ccel_0501" + /inference="similar to AA sequence:KEGG:Cthe_0502" + /note="KEGG: cth:Cthe_0502 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74883.1" + /translation="MKRIPLCLVMAAFIILSSCGNDKIVLHKHSSYGYHNGDVKLDKT + IKTLDVNIDSGKLQIYCWDNNEIKYEAKHVARGNKSDEALQELLKKYSVKPNQKEKTM + YITVAYGGKIKNPQDFYTEIKLTIPRNIKNIFIKQDVGSISVEDKIDGNITGDVDSVN + TEIKAMNGKLSWTCDTGSFRLGSGKLFSDSTVNIKAGNISSKAECQNNSQYLFKTDAG + NVELSFPADSDVTVDSYGTLQNNQFTGINGNIKIKASTKMGKICVNGY" + gene 582244..583380 + /locus_tag="Ccel_0502" + CDS 582244..583380 + /locus_tag="Ccel_0502" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cac:CAC0037 MinD family ATPase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74884.1" + /translation="MALIKILIVDEDDEYSISLCNFLTHNYSETIALNYCKDIEEVKN + RINEIVPDVILASEKYHREIKNYSKNNVILLSSVKNSASTIQNDYIYKYKDVNQIAAE + IINIHTRSGNKIHDIGGNIAKVISVFSAAGNVGKTSLALAVSSICSFSGLSVFYLNLE + QFQSTNIFFNGNTQNSFSDIIYFAKEKDKNLVTKIPAVCSKAIDSGIHYFSQTNNVFD + IKEIQPEDIEFIVSAIKNCGYYDLIMVDMDSQLNENTMKVFEKSDEILYLITKEESCL + HKTKQFIDSITLLSNSFENQAAIKNKIKYIANKVYKQAYLSEKFLLEQELLFQIVYDS + DFPSLNNLSQLNGGPEIILNTYRDIAGRYIKHNMEVRCETGTHQ" + gene 583358..584593 + /locus_tag="Ccel_0503" + CDS 583358..584593 + /locus_tag="Ccel_0503" + /inference="protein motif:PFAM:PF00437" + /note="PFAM: type II secretion system protein E; + KEGG: cth:Cthe_1339 type II secretion system protein E" + /codon_start=1 + /transl_table=11 + /product="type II secretion system protein E" + /protein_id="ACL74885.1" + /db_xref="InterPro:IPR000217" + /db_xref="InterPro:IPR001482" + /translation="MKQELINEIKTSINDKIDLKRNFTDDEINELTVRTVLDKSKQVF + LSSTEKKQIIESVFNSLRRLDILQPILDDNQVTEIMINGPNDIFIEKKGKISRLEMFF + ESQQKLEDIIQIMVTAVNRTVNESNPIVDARLKDGSRLNVVLPPIAINGPIVTIRKFP + GKPIDVKSLIELGSLTEEAADALKILVRAKYNIFVAGGTGAGKTTYLNVLSNFIPADE + RIITIEDSAELQITNISNLVRLETRNANVEGRGEVTIKNLIRTALRMRPNRIIVGEVR + GEEAIDMLAAMNTGHDGSLSTGHANSSQDMFSRLETMILSSAPLPLEAVRKQIASAID + IIIFLSRLRDGSRRTMEISEVLGIENGLIRLNPLFVFEETFQGDKKPINLVCGCLKRT + LNPLINKHKIINSGIYNDF" + gene 584605..585348 + /locus_tag="Ccel_0504" + CDS 584605..585348 + /locus_tag="Ccel_0504" + /inference="similar to AA sequence:KEGG:Cthe_1338" + /note="KEGG: cth:Cthe_1338 Flp pilus assembly protein + TadB-like protein" + /codon_start=1 + /transl_table=11 + /product="Flp pilus assembly protein TadB-like protein" + /protein_id="ACL74886.1" + /translation="MVDYNEYAIPTKMKLVYALSAATVVFAVSYLFYRSFTVSIAISP + LGIFYLNYRRKQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYP + SDDAYIVRETKIIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVD + AIKNSSRIISEKIEMAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTT + VTGRIAATLCLILLTAAYFISKRIINIKM" + gene 585355..586080 + /locus_tag="Ccel_0505" + CDS 585355..586080 + /locus_tag="Ccel_0505" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1337 type II secretion system + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74887.1" + /translation="MLSLWIVTGVTLSAYGLALLVVLIKNYPSYSQYCSVLDSKEYPL + KRLLPFGLYILDKISYSFNSAYDRRIIGRISEIYGQEYSAFHIRVFHAKKIVLIALII + PGELIVGILSHYQAVFNVYITLLFGILIFLDDSRLSRKIKKRHLEIQLSFPDFINKLA + LMLNAGLTMSKAWEKISFDSNKQDAFYKEVKKTVSHKASVSNDDNVLCNNYHCNYSCI + NIHAGNIKFLENQFKAVFTNKED" + gene 586082..586177 + /locus_tag="Ccel_0506" + CDS 586082..586177 + /locus_tag="Ccel_0506" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74888.1" + /translation="MIAALKRFIREEDGMGTVEVIIIIAVLVVKW" + gene 586182..586778 + /locus_tag="Ccel_0507" + CDS 586182..586778 + /locus_tag="Ccel_0507" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1336 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74889.1" + /translation="MKNNKGSFTVEASLVFSVVFLMVTAFVYLFVIMYQYVNMQSVAN + EAATKGAYFYVNQTGNNYGSNKLDEMYWRIYDTNNNKKASGIIDYANKLLNKSLFPAE + NNISVNTYNKILIKNLKIEIVDKYTIPVSNMFDIFGLSPVLSLKVVTNSPLDDNAEFI + RNMDIVTDIHNCIKNSDTKWTGEGSKLENILEKLLKKN" + gene 586792..588939 + /locus_tag="Ccel_0508" + CDS 586792..588939 + /locus_tag="Ccel_0508" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1835 viral A-type inclusion + repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74890.1" + /translation="MEQHKTKGAITVFLSIVLTAIFLVIGTFTDGARLRLAQSHVQRA + NKAAISSVLANYNNELKDEYGLFGVYLDEDSLQETYEEYLSKNLGIVGKGKSMYDFSI + DNIKLENPYSLENKEVIENQIMEFMKYRAPYKLATELIEKVKGIKNISKGSNVYSRKM + QTDKQAAEIGRIQLSLENKTKRINEFNLTTQLSALKDDFKKQNEVLNEKNKSIQNLEN + IYQNETNIKKKQDVGKLLQNVREEMQNINNTKNNIKNSILDGINEFKSLNSEAISEAA + AIADKKKLLCDRINGEMEQIEEHYEGIHELQNSYKKSMGKIKNMVEQDNSESVMGGFK + QNIENCNQIISSSESDEENFLNSLDKLSNIAVVNYSFIKTESAHSNDKDNRKKASDEL + KTAFKKDGDSKKIPDDILKNLPSKKSGFKEETGARTWDNPNFEDESFAVDNFNYIAEK + DNTFGDIANKISEELFLNEYIMGTFKHGIPILEGQTEKDAYNLRSKDKSQRISFFTNF + EIEYIINGNRDETINSMLTKSEIMAIRLISNVLHIYADSSKITRVTSLAAALSSWCAG + LSTPLIQTMLVFSWAAFESLYDINILEKGGKVALFKTDVQWMTDISGAVSKKEKNKVS + NDILCLSYQDYLKIFLVTMDKDKKLMRVQDLVQLNKSVKSPGFLLADCKVFFKAYTGV + SIKNLFVAFPMFTTESRRKVSRSNINESMYLGY" + gene 588953..590017 + /locus_tag="Ccel_0509" + CDS 588953..590017 + /locus_tag="Ccel_0509" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1830 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74891.1" + /translation="MKSKGLQDKGSITIEAAICLPFFILAVISFVFLIKVHFSHEIIQ + HAITGACNEMSVYSLIYYNTNAEELVGGLEKFCKSDKVSNAVGNSVLSQYIQEFGKDA + SDYVRVRTVLVPITKKLVRENLGTSSDNADIRLKNLSIRNGFDGIDFTHSRMAADGKS + IDIVAEYKLEFPFLSQLLPGIKICQTASACIWAGEDGVNSLKYNSDETNTECVWNLGN + IKRGREIRRLQGANLPFNFPVISKYENGTATSIKSLNLDKIYYHNTNNLEKKLKGYIT + KLQEFNGGKNGSVEIDSNQILRKELILVVPETDILPVQLQTLNKCVDIAREKGIYLKI + VKAYGKQNNAENEVENAKGY" + gene 590001..590549 + /locus_tag="Ccel_0510" + CDS 590001..590549 + /locus_tag="Ccel_0510" + /inference="protein motif:PFAM:PF01478" + /note="PFAM: peptidase A24A prepilin type IV; + KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV" + /codon_start=1 + /transl_table=11 + /product="peptidase A24A prepilin type IV" + /protein_id="ACL74892.1" + /db_xref="InterPro:IPR000045" + /translation="MQKVIKIENKKIRKFTTAMICVVIWIAGIVGTVGFIYKSKLPAA + IGVLLTVQLLAALWDIKSMTIPAKITVPAMVAGAVIVALTGEFLEGTAAAVLSFILMK + LLAIISRNQVGGGDIAIMTVTGLYTSIGALISILFASVTLSGVFSVIFIISGKADKKT + EIPFAPFILTATVLLTLSGYVN" + gene 590582..592009 + /locus_tag="Ccel_0511" + CDS 590582..592009 + /locus_tag="Ccel_0511" + /inference="protein motif:PFAM:PF00498" + /note="PFAM: Forkhead-associated protein; + KEGG: cth:Cthe_1334 FHA domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="FHA domain containing protein" + /protein_id="ACL74893.1" + /db_xref="InterPro:IPR000253" + /translation="MYETLELNFDISYENDSTSNYLVLKPKNDRKLIDYQVQMLLNNR + IHGLLSLHINSVGNQVNCFYDITSKCTLVNIMNRKKYNRYEFLITMLTIIKSIIGLKD + YLLNDNNILLDENNIYVDPEALNLFFVYLPFENNSNDIRTFLINIIVKLVKFQEEDCD + NYIQKILENIKNELFNLTCLKELLENLLSQDITRNTPNESFSIDKPENEPLNEIKIKA + SKQKQKSLIQRGEVKIPNLPSEECSPKNLNIKHKDFSKAFGKLTLMQIILQPIILLIL + FKILSSNFVRMSDSPKTTTIILSLIFISIDILLIRILNEKKTENTESYKPLQYITEKM + RENSALTVKQASEKDSKKAEEVHIKNINNRGGETVILKSNEPKDIPYLQEKDGEDIIK + VNKTSILVGRMGSFVDHIVDNNAVGKVHAEIINEDGSYFVMDCSSRNGTYINDGRIKP + NTKTSVNNNDVIRFANKEFIFIIPS" + gene 592045..592548 + /locus_tag="Ccel_0512" + CDS 592045..592548 + /locus_tag="Ccel_0512" + /inference="protein motif:PFAM:PF01478" + /note="PFAM: peptidase A24A prepilin type IV; + KEGG: cth:Cthe_0545 prepilin peptidase CpaA" + /codon_start=1 + /transl_table=11 + /product="peptidase A24A prepilin type IV" + /protein_id="ACL74894.1" + /db_xref="InterPro:IPR000045" + /translation="MIKYIILFLLVLFSVVSDIRTSKIRNIHTASAMLAGLVINTHLS + GMYGFKESMEGIILPVFLFGIFFYARLIGAGDIKLFSSIGAVFGIDFVIMVIAYSFLI + CGLYSLVMLCIKRKFVSTFVPFIKEIRLCCLTLNLSVFENKTTRTYIRMSPAIAAGCV + FQVLLNL" + gene complement(592543..593412) + /locus_tag="Ccel_0513" + CDS complement(592543..593412) + /locus_tag="Ccel_0513" + /inference="protein motif:PFAM:PF01734" + /note="PFAM: Patatin; + KEGG: cno:NT01CX_0225 patatin-like phospholipase" + /codon_start=1 + /transl_table=11 + /product="Patatin" + /protein_id="ACL74895.1" + /db_xref="InterPro:IPR002641" + /db_xref="InterPro:IPR005829" + /translation="MAKVNLILEGGGMRGLYTAGVLDCFLDHKILFKDIIGVSAGACN + SLSYITGQRGRNLEINAGYCMDNRYVSVMGLFTRGSIFNMDFLFNDIPNKLIPFDYDK + FKSSGCKLTVVTTDCETGKSYYAPVNDMKVDDVYVKASSSIPLVSPIVEAAGRKLVDG + GPSDSIPIHYSVNIGFDKHVIILTQHKGYEKKPNKLYPLCKIKLKKYPNLVEAIKNRH + IHYNKSIKLAEKLEEENRAVIIRPKKPIEISRFERNPENLKKLYAEGYKDAEDKFSDI + ARLCKDCSNFSLL" + gene complement(593499..593933) + /locus_tag="Ccel_0514" + CDS complement(593499..593933) + /locus_tag="Ccel_0514" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: protein of unknown function DUF6 + transmembrane; + KEGG: tde:TDE2739 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL74896.1" + /db_xref="InterPro:IPR000620" + /translation="MVKGGKNMWFAFALLSALFAAFTSILAKIGITGINSNLATAIRT + IVVLIVAWGMVFLTGAHHGITNISTKSWVFLILSGVATGLSWLFYYYALQIGEASKVV + PVDKFSVVISIVLAFVILHEAVTVKTVLGAVFITIGTFIMIL" + gene 594208..594624 + /locus_tag="Ccel_0515" + CDS 594208..594624 + /locus_tag="Ccel_0515" + /inference="protein motif:PFAM:PF01894" + /note="PFAM: protein of unknown function UPF0047; + KEGG: cth:Cthe_0456 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0047" + /protein_id="ACL74897.1" + /db_xref="InterPro:IPR001602" + /translation="MKSFRKELFFNVPRRRAYINITQQVQQCIDESGIKEGMVLVNAM + NITASVFINDDEAGLHADFETWLEKLAPEKPYSQYNHNGYEDNADAHLKRQIMGREVV + VAITKGELDFGTWEQIFYGEYDGKREKRVLVKIIGE" + gene 594681..595406 + /locus_tag="Ccel_0516" + CDS 594681..595406 + /locus_tag="Ccel_0516" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74898.1" + /translation="MLSQETKEFLMSCGIEKEMQQLEDCCSDYLIRFIHKMYPMPENT + KNMLGRNSMHYIQMALCRSKLLTDGVITALNAKNGLLAMLAARAHLEVTGALAFFLKK + LNNYYRNAISYQILNEALQRLILGTKSLELSENAPAPVNVMTLIDAADEYLSKTRNEE + TKEFRENYNYLSEYCHPDFFGITMQSRINNAGITTYSLFYNLNEQDLTFLSSLMSSVS + TFFLLFDSILELLMENEELPEYQ" + gene complement(595476..596702) + /locus_tag="Ccel_0517" + CDS complement(595476..596702) + /locus_tag="Ccel_0517" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbh:CLC_1710 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74899.1" + /translation="MAKIRKITTISILFCIIVSCLCSLQAKPIDIRQAEQLTTEFLCT + KIQSVVSHNVDAINIYYTNSPTSQRNLLFIQKQLLEDYIISYASNDYTIEKVEPRVKI + NETLFDGKFANIRATLTADIYWNAANPLGNPIKGRKVEEHLLLLKNENDVWKIEQDKF + QTKKGSSVELTRESIADLHEQIRTLKFQAEKALDKARKSKPSKLTPETPEWKMSDLYT + PRISQDYNRQEVYNWAYNHWNNYSKEYLNFGDEKWKGGDCTNFVSQCLRAGGAVNDKS + GAFQWYYDKKGTLASTNDTYSWTWSTARGLNSILSGNHNNEEFGPKATQKVISGDDQY + DTSIGKYVVPGDLIQYHWNNKSTITHAAVIVGMIYNSSKFRYEPVIAEHTEDSWFTPW + TNNAYKTYFVHITGIN" + gene 596854..597645 + /locus_tag="Ccel_0518" + CDS 596854..597645 + /locus_tag="Ccel_0518" + /inference="protein motif:PFAM:PF06725" + /note="PFAM: 3D domain protein; + KEGG: cth:Cthe_0664 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="3D domain protein" + /protein_id="ACL74900.1" + /db_xref="InterPro:IPR010611" + /translation="MAEKDNENSTDVRVFKLLTIALILTSALLAVFCISVNNVVNQYK + EKYNNECIQSMRIMKSNQSLTANTNSYKSQSDELSKLNNDLKKQNEQIKKQLEELKKQ + NKQLEATKRELADDNLHLQKSLKKAASVGVKPQSYKIYSSNNLETNSKGKFLGKFLGT + AYTPCAEECGNNKGITSSGQPIVPGVSIAIDNSHWPYGTIFYIKGLGYTVAMDTGSAI + KGKNRFDFAVLDKKFAYELGQQYYDVYLVKMGNGKINESIIAKPA" + gene 598014..598868 + /locus_tag="Ccel_0519" + CDS 598014..598868 + /locus_tag="Ccel_0519" + /inference="protein motif:PFAM:PF01113" + /note="PFAM: dihydrodipicolinate reductase; + KEGG: cth:Cthe_1170 dihydrodipicolinate reductase" + /codon_start=1 + /transl_table=11 + /product="dihydrodipicolinate reductase" + /protein_id="ACL74901.1" + /db_xref="InterPro:IPR000846" + /db_xref="InterPro:IPR011770" + /translation="MKVCISGLGRTGKEIAKAILLQNEIQLVSAICSPTSKSLNKDLG + EILGINKTGITVTGSDKLEEVIFRNKPDVVIDFSNPKSALKNALIFSKYRINIVVGTT + GFSDYQLKKLYVICRKFKNGIVYAPNITMGVNVLMLLSNLTASLLSSYDFQITELHHK + NKLDSPSGTAKKIAGEIQNGLSNKGVVVSHKDIPINSVRAGGVIGKHEVMIVGQEDKI + EISHESFSRKAFAQGAISAAKYIHKKSGYYEMKDVLDLEKVLQTYIENNNRSSRRRRK + YDAKPASN" + gene complement(598883..600103) + /locus_tag="Ccel_0520" + CDS complement(598883..600103) + /locus_tag="Ccel_0520" + /inference="protein motif:PFAM:PF00768" + /note="PFAM: peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1; + KEGG: cth:Cthe_1171 serine-type D-Ala-D-Ala + carboxypeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1" + /protein_id="ACL74902.1" + /db_xref="InterPro:IPR001967" + /translation="MSKKILIVFVALILIFNCLPVFAWTPTEGLTSSSVVLMDTVRGQ + ILFEKNAYAHLSPSVMCKLMTALVTIEKTDLNAKVTISKNAASFKGLNLVVGNQYTVE + DLLYAVMLSQGNDAAVALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKD + QYTSAKDIAVLVKAAISNNTFNLMFGARGFGWLNGNNSSILTNQNTLFWSYKGVDGGK + IGTNTNPQSISAVTTATLNEKRLIAVVFNTNEENAFSETAKLFDYGFSKFYTGVLVPK + NIPQRSIEVDNVKVDLVSKIDVYYTYPVGDSFINNISFTPNEKLKLPLNTETIAGVLK + YTLNDNTVIEVNLYSDKTVSAPEDYISKIKNIVTENRDLVIIVGILAIIELVLIAKNL + LKFIFKAKKTRTQK" + gene 600333..602069 + /locus_tag="Ccel_0521" + CDS 600333..602069 + /locus_tag="Ccel_0521" + /inference="protein motif:PFAM:PF03323" + /note="PFAM: GerA spore germination protein; + KEGG: cth:Cthe_0667 GerA spore germination protein" + /codon_start=1 + /transl_table=11 + /product="GerA spore germination protein" + /protein_id="ACL74903.1" + /db_xref="InterPro:IPR004995" + /translation="MGVVKKLSKYIIYDEKSIKHEFELKEKKSLNCEEVRNSASMDTF + GSEKFKDYFEECPVDDEFLEESVSDEIEHNKSIMKKIYNIPENSDIVYREFNITVKDK + SFQAFIVFIDGMTNSSIISDNILQPLMILSNLDIKEEAKDVGEFIFNRLIPFNQLKKA + KDFKEIVSNINFGGCTIFVDGLEYAYTADTKKWEHRNVGQPNSETVIRGPQEAFNEQI + RANTALLRKILKDKDLTIKGLTIGKRSNTPCAVMYIRDIANESLVREVLKRVKSIEVD + YIFDSGELEQLLEDSTFLTAPQIFATERPDTVARMLAQGNIAVILDGSPYVLVMPATI + TEYLSTPEDINIRFPYVNFVRIIRIIGVAIALLLPGLYIAITNYHQEMIPTNLLFAIE + ASREIVPFPTVIEILVMEFSFELIREAGIRVPGAIGSTIGIVGGLILGQAAVAANLVS + PILIIVVAITALGSFSIPSFSMSFSIRIIRFAYIILGAIAGFSGIALGLLLNALLLAS + SKSFGVPFLTPFGPITNGKYSDKILRKPMWKQEKRPDYLNTKNIKKQPEISRGWTVDD + SGEDGGKDNEEQ" + gene 602056..603159 + /locus_tag="Ccel_0522" + CDS 602056..603159 + /locus_tag="Ccel_0522" + /inference="protein motif:PFAM:PF03845" + /note="PFAM: Spore germination protein; + KEGG: cth:Cthe_0670 spore germination protein" + /codon_start=1 + /transl_table=11 + /product="Spore germination protein" + /protein_id="ACL74904.1" + /db_xref="InterPro:IPR004761" + /translation="MRSNDGFGSWEAICILINMVFVQAILYFPKEAADFSGSAGWMIP + IGITIVAYIYFAIVTGFYRYSGSMDLLEISQRAAGRIMKIIVGLLTALLLIFLEASLL + SRYAHSLKTISLDKSPLSYVLLFFLIGMVAAAYYGIEAVARISAFIVPVCIIGFLLIT + IGVIPEFNTDNLFPILGKGVDSIINGSTLSLRVFSPLLLVFFMIPFFKRRNLKRVGYL + SITISGIVTLWSTLAFFLTFPYEMAVDKKIPVYQMARLIEFGNYIQRVESVFVLVFSL + SSILYMGALFAFITYIIAKTLDLERYRPIILPTVVIIYCLTFIIKRFSLNLLVSQLTN + ILWILALMLPIIVLIIGSIKKAGSENEGGKDYE" + gene 603134..604333 + /locus_tag="Ccel_0523" + CDS 603134..604333 + /locus_tag="Ccel_0523" + /inference="protein motif:TFAM:TIGR02887" + /note="TIGRFAM: germination protein, Ger(x)C family; + PFAM: spore germination B3 GerAC family protein; + KEGG: cth:Cthe_0669 spore germination B3 GerAC like" + /codon_start=1 + /transl_table=11 + /product="germination protein, Ger(x)C family" + /protein_id="ACL74905.1" + /db_xref="InterPro:IPR008844" + /translation="MKEGKIMSKITRLFCIISCITIYMITLTGCYDSREIEDLAYVVA + IGIDEADNNMFNLTFQTAVPKSITTGEGETTDIKSFKTDNFLSGFRKTGRYLSKKINL + SHTKIIVVSEEIAKRGLLPFLNGLQNYMELRPNVNIIVSANGAKNYIESLQPKLTASP + TKFYDMMFKSYQTDFRVPSSQLGDYLYRTDSSGSQPVTIYTEVDNSVIDSKKPEAGKP + TEQQKEEKKNMSIKGLAVFNRDRMKGSLDSAETSLYALLTGSIDFIKLDVKDPLDERY + KILSNIRKDRSSKTNIQVYGNRPQINVDLNLRADIEAVQSNIDYSDPAKSARVKKAYE + DYLKNEMNNLLSKVSYKYKSDIFGFGQIAKMNYRSISQWDKIKWHEIFPNAVYRVRIN + VTVSDEE" + gene 605119..606759 + /locus_tag="Ccel_R0012" + rRNA 605119..606759 + /locus_tag="Ccel_R0012" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 606937..607012 + /locus_tag="Ccel_R0013" + /note="tRNA-Ala2" + tRNA 606937..607012 + /locus_tag="Ccel_R0013" + /product="tRNA-Ala" + gene 607533..610445 + /locus_tag="Ccel_R0014" + rRNA 607533..610445 + /locus_tag="Ccel_R0014" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 610697..610812 + /locus_tag="Ccel_R0015" + rRNA 610697..610812 + /locus_tag="Ccel_R0015" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(610925..611395) + /locus_tag="Ccel_0524" + CDS complement(610925..611395) + /locus_tag="Ccel_0524" + /inference="protein motif:PFAM:PF01842" + /note="PFAM: amino acid-binding ACT domain protein; + KEGG: csc:Csac_1581 amino acid-binding ACT + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="amino acid-binding ACT domain protein" + /protein_id="ACL74906.1" + /db_xref="InterPro:IPR002912" + /translation="MTILPVTSISTVYNVALVAVDNLPNDMVFISGIFNKIAEEKINI + DMISQSPPYKGKINIYFSIPAENIIKVIAILNSFKIRAPNLRIEIDSDSTKISVFGEG + MRDKPGVAAKVFTLMAENEIEIKLITTSEVDISYLIYEKDADKAIKAIKQEFRL" + gene complement(611421..612185) + /locus_tag="Ccel_0525" + CDS complement(611421..612185) + /locus_tag="Ccel_0525" + /inference="protein motif:PFAM:PF01113" + /note="PFAM: dihydrodipicolinate reductase; + KEGG: cth:Cthe_0963 dihydrodipicolinate reductase" + /codon_start=1 + /transl_table=11 + /product="dihydrodipicolinate reductase" + /protein_id="ACL74907.1" + /db_xref="InterPro:IPR000846" + /db_xref="InterPro:IPR011770" + /translation="MIKILLSGCNGKMGQVITRLSDNFSELKITAGFDINNNINNPYP + VFTSLADCNADVDVIIDFSNPKAFKPLVEYAQEKHIPLVLATTGLSSEQITILKTSVS + NRIPVFFSANMSLGVNLLIDLVKKAAKVLEDQFDIEIVEKHHNQKIDAPSGTALAIAD + AINDSLDEKYEYMYDRHSRRKKRSKQEIGIHAVRGGTIVGDHSVIFAGNDEIIEINHT + ALSKEIFAVGALKASIFLASKKPGLYSMSELISETN" + gene complement(612214..613095) + /locus_tag="Ccel_0526" + CDS complement(612214..613095) + /locus_tag="Ccel_0526" + /inference="protein motif:TFAM:TIGR00674" + /note="TIGRFAM: dihydrodipicolinate synthase; + PFAM: dihydrodipicolinate synthetase; + KEGG: cth:Cthe_0962 dihydrodipicolinate synthase" + /codon_start=1 + /transl_table=11 + /product="dihydrodipicolinate synthase" + /protein_id="ACL74908.1" + /db_xref="InterPro:IPR002220" + /db_xref="InterPro:IPR005263" + /translation="MKKPIFTGSGVAIITPFTNDGTDYNKLSELIEYQIKEGTDAIII + CGTTGEASTMYDEEHKAAIKFAVEKVNKRIPVIAGTGSNHTVHAVALSKYAEEVGADA + ILTVTPYYNKTTQKGLYEHFKMVADSIKIPVVLYNVPSRTNLNIIPETIHALSKIDNI + VAVKECNLSQVGDVINLCGDDITVYSGEDGAIVPFLSMGAKGVISVLANIAPKDTHDI + VAKYLSGDIEGSRKLQLKTLDLIKALFCEVSPIPIKAAMNLMGMNVGGCRLPLVDMSD + SNLEILKTELIKYGLLL" + gene 613548..615188 + /locus_tag="Ccel_0527" + CDS 613548..615188 + /locus_tag="Ccel_0527" + /inference="protein motif:TFAM:TIGR02669" + /note="TIGRFAM: SpoIID/LytB domain protein; + PFAM: Stage II sporulation D domain protein; + KEGG: cth:Cthe_0960 SpoIID/LytB domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="SpoIID/LytB domain protein" + /protein_id="ACL74909.1" + /db_xref="InterPro:IPR013486" + /db_xref="InterPro:IPR013693" + /translation="MKKMCLFLGIVMIFMMMPGFNNLNTSAAEATSVKIGLYYGSTAQ + SQIDISADKGVAFSAFDAKAGKYYNVFNSNAGQTVTIRKDSYFIKSGTKYTPVAATGK + PTSGPFHIRLSGSFNSYNDTVLPIKSYSEKGIAAYPVYTDSGWQIWTGFYVSKSAAQT + ATSTVKSKLGENTYTVIDELSSRIYCTDQNGNVLFMYSSSDSLLRGKSLSTANSNPVK + IGTSLYRGQVEFLRMSDSDMTIINVLPFEEYLYGVVPNEMPAYSNIEALKTQAVAART + YSYRSINKHSKNGFNLCATTHCQVYKGFSSENANTNKAVDETRNMVVTYNGALAETVF + SASTGGRTEDAENVWGSSIPYLKSVEDKYESGKSYNYNWTMKFTTDEISTKLKSYGLG + TVTGIEITKYSAAGRPIEMIIRGTLKPEGVTIKNERCRTFLGLPSQMYSISSDANINI + QINNKTENVSLSQIKIITRDGEKTYNDPSQKVTIIGANGNKSVVSSSPGEYVFTGKGW + GHAVGMSQEGAMGMAKAGFTYDQILTHYYTGTKVELKK" + gene complement(615248..616612) + /locus_tag="Ccel_0528" + CDS complement(615248..616612) + /locus_tag="Ccel_0528" + /inference="protein motif:TFAM:TIGR00657" + /note="TIGRFAM: aspartate kinase; + PFAM: aspartate/glutamate/uridylate kinase; amino + acid-binding ACT domain protein; + KEGG: cth:Cthe_1375 aspartate kinase" + /codon_start=1 + /transl_table=11 + /product="aspartate kinase" + /protein_id="ACL74910.1" + /db_xref="InterPro:IPR000192" + /db_xref="InterPro:IPR001048" + /db_xref="InterPro:IPR001341" + /db_xref="InterPro:IPR002912" + /translation="MKVAKFGGTSLANAEQIKKVCSIVLNDSERKVIVVSAPGKRDSS + DTKVTDLLIACAQKHLENGNAEAELEAVVMRFKNIANELGLDDEIVNLIRADLEERLK + LDTSHAGTFMDAMKAAGEDNSAKLVAAYLNSIGKKAEYVSPKKAGLLMSDKFGNAQVL + PESYENLKMINNIDGIVIFPGFFGYTKDGKVATFPRGGSDITGSILAAALKADLYENF + TDVDAVYAAHPGLVHNPVAVPELTYREMRELSYAGFSVLHEDTLVPVFKAGVPVCIKN + TNNPSAPGTKISLVRDYSPNHVVGIASDAGFCCIYVSKFMMNREVGFGRKLLQILEDE + GISYEHTPSGIDNISIILKQNQLKEGMEQKIIDRIKAELKVDDVSIDHDLAMIIIVGE + GMKNTVGTASRATTALAKASISLEMINQGSSEITMMFAVRENEAHKAVISLYNEFFLN + KQYK" + gene 616871..617893 + /locus_tag="Ccel_0529" + CDS 616871..617893 + /locus_tag="Ccel_0529" + /inference="protein motif:TFAM:TIGR00113" + /note="TIGRFAM: + S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; + PFAM: Queuosine biosynthesis protein; + KEGG: cth:Cthe_0959 S-adenosylmethionine:tRNA + ribosyltransferase-isomerase" + /codon_start=1 + /transl_table=11 + /product="S-adenosylmethionine/tRNA-ribosyltransferase- + isomerase" + /protein_id="ACL74911.1" + /db_xref="InterPro:IPR003699" + /translation="MNLHDFDYYLPEELIAQHPLEKRDMSRLMVLDKQTGEIEHKLFK + DLFNYLDEGDCLVLNNTRVIPARLLGEKEGTGGKIEFVLLKRVEGDNWEVILRPGKKA + KPGSKFVFGNGELKAEILEVLDEGNRLVRFIYDGVFEEILDRVGVMPLPPYITEKLDN + PERYQTVYAKVNGSAAAPTAGLHFTKELLDSLVHKGVKIAYVMLHVGLGTFRPVKVDD + ITQHKMHSEYYSISQETCDIINVTREKGKKVVAVGTTSCRVLETIGKNGKIAPCDGWT + DIFIYPGYEFKVVDRLITNFHLPESTLIMLVSSLAGRDNVLHAYSVAVEEKYRFFSFG + DAMFIK" + gene 617924..619045 + /locus_tag="Ccel_0530" + CDS 617924..619045 + /locus_tag="Ccel_0530" + /inference="protein motif:TFAM:TIGR00430" + /note="TIGRFAM: tRNA-guanine transglycosylase, various + specificities; queuine tRNA-ribosyltransferase; + PFAM: Queuine/other tRNA-ribosyltransferase; + KEGG: cth:Cthe_0958 queuine tRNA-ribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="queuine tRNA-ribosyltransferase" + /protein_id="ACL74912.1" + /db_xref="InterPro:IPR002616" + /db_xref="InterPro:IPR004803" + /translation="MAAVTYELIKTCKQTGARLGKVHTPHGSFDTPVFMPVGTLATVK + GMSPEELKEIDARIILSNTYHCYLRPGQDIVKQAGGLHGFMNWDRPILTDSGGFQVFS + LSGLRKITEEGVTFRSHLDGSKHVFTPESVMDIENDLGADIIMAFDECAPYPAEYDYV + KKSMERTTRWAKRCKEAHTNTEKQSLFGIIQGGMYKELRIESANQLKELDFPGYAIGG + LSVGEPAEIMYEVLDYTAPLMPADKPRYLMGVGTPDYLIEGAIRGIDMFDCVLPTRIG + RNGTVLTSNGRVIIRDAKYSRDFSKLDPECDCYVCRNYSRAYIRHLIKCGELLGLRLT + TWHNLYFLINLMKQVRQAIMDDKLASFRDEFYLKYGYTK" + gene 619108..619389 + /locus_tag="Ccel_0531" + CDS 619108..619389 + /locus_tag="Ccel_0531" + /inference="protein motif:TFAM:TIGR00739" + /note="TIGRFAM: preprotein translocase, YajC subunit; + PFAM: YajC family protein; + KEGG: csc:Csac_0272 preprotein translocase, YajC subunit" + /codon_start=1 + /transl_table=11 + /product="preprotein translocase, YajC subunit" + /protein_id="ACL74913.1" + /db_xref="InterPro:IPR003849" + /translation="MAVAALVQLVLPMALILGLMYVMLILPQKKKEKKTQQMLNSLQV + GWAVTTIGGIVGKIINIKDDEIYIESGVDKNKILVKRWAIKDVVKPVEG" + gene 619494..619898 + /locus_tag="Ccel_0532" + CDS 619494..619898 + /locus_tag="Ccel_0532" + /inference="similar to AA sequence:KEGG:Cthe_0955" + /note="KEGG: cth:Cthe_0955 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74914.1" + /translation="MSVQTPGLKKTLDEHINLLRVVKGLIIAFLITLPCFLGFALFLT + YTDFPEKHTYIAVLITTVISVLVASAYSTRNVKSKGWMNGCFVGILYVAILYIASSIV + FLSFHIDIQVILSVIIGAIVGCLGGIFGINLR" + gene 619980..620120 + /locus_tag="Ccel_0533" + CDS 619980..620120 + /locus_tag="Ccel_0533" + /inference="similar to AA sequence:KEGG:Amet_2345" + /note="KEGG: amt:Amet_2345 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74915.1" + /translation="MKHIKTINNATLKNSLAKGGCGECQTSCQSACKTSCTVANQSCE + NK" + gene 620259..621602 + /locus_tag="Ccel_0534" + CDS 620259..621602 + /locus_tag="Ccel_0534" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cth:Cthe_0906 radical SAM family protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74916.1" + /db_xref="InterPro:IPR000385" + /db_xref="InterPro:IPR007197" + /translation="MIHKYTMHDTNIVLDINSGAVHVFDDAAFDVVDLYKNKTKEQII + ESLSENYTGQVIVDAYGEIAELESQGLLFSEDAYSDALQKWERKPVVKALCLHICHDC + NLRCKYCFASTGSFGGHRTMMDLETGKKAIDFLIEKSAGRRNLEVDFFGGEPLMNFDV + VKGIVKYARIREKEAGKNFRFTITTNAVLLNEEIKDFINANMHNVVLSIDGRKETNDR + MRPRVDGSGTYTKILPKILDMAESRNQDNYYVRGTFTRENLDFSNDVLHLADQGFKQI + SIEPVVAAKDSGYDIREHDIPKLFEEYENLAREYVKRDSEKRGFNFFHFMVDLQQGPC + VIKRLGGCGSGHEYLAVTPEGDLYPCHQFVGDEKFKMGNVHEGVFNTDFQKNFQKSNV + YTKKDCAECWAKFYCSGGCAANAYQFNNDINVPYKIGCELEKKRVECAIWIKTQE" + gene 621614..622114 + /locus_tag="Ccel_0535" + CDS 621614..622114 + /locus_tag="Ccel_0535" + /inference="protein motif:PFAM:PF00132" + /note="PFAM: transferase hexapeptide repeat containing + protein; + KEGG: tpd:Teth39_1022 carbonic anhydrase" + /codon_start=1 + /transl_table=11 + /product="transferase hexapeptide repeat containing + protein" + /protein_id="ACL74917.1" + /db_xref="InterPro:IPR001451" + /translation="MVKDFNNITPKIHETAFVAPNSTVIGDVVLGENTTIWYNAVLRG + DIDSIVVGNNTNIQEGCILHCKKGIEVRLGSHVTIGHGAILHSCRIGDNTLVGMGAIV + LDSAEIGDNCLIAAGSVVTPRTKIPDGCLVSGSPAEVKRTLSEQEIADIKCNANEYIN + LLKYYK" + gene 622362..623687 + /locus_tag="Ccel_0536" + CDS 622362..623687 + /locus_tag="Ccel_0536" + /inference="protein motif:TFAM:TIGR01129" + /note="TIGRFAM: protein-export membrane protein, SecD/SecF + family; protein-export membrane protein SecD; + PFAM: SecD/SecF/SecDF export membrane protein; + KEGG: cth:Cthe_0904 protein-export membrane protein SecD" + /codon_start=1 + /transl_table=11 + /product="protein-export membrane protein SecD" + /protein_id="ACL74918.1" + /db_xref="InterPro:IPR001036" + /db_xref="InterPro:IPR003335" + /db_xref="InterPro:IPR005791" + /translation="MRGSNAVKFFSILVIIGILTWIAAYGSILGVEIPGVRDIRTGID + IQGGVDARLYAVTKDNSKPKAEDLDAARIIIGKRLDSKNIFDRVITVDKDKGYVLVQI + PHKKGEAFDPQRSIEEIGKTALLTFQEVDESKKDSNGYLPTGKIILEGSDVKEASAEV + DGENGGYCVALTLTSEGGKKFSEATGRLIGKPIAIFMDNDLISAPNVQTQISGNSARI + TLGGTASNEQRDEAKNLAGLIKSGSLPFKLEARQVNNISPTLGSNALKVSIEAFIVAL + ILICLFMIFYYRLPGLIASIALILHTVMELLALSWTNIIVTLPGIAGLILTVGMAVDA + NVIIFERIKDELKNGKTLRAAIDVGFKRAFSAVLDSNITTLISAVVLWKFGSGPIQSF + AYTLGIGVVLSFLTAVTASRIMLQSIQDLEVAKHHWLYGVSMRGGKANG" + gene 623680..624663 + /locus_tag="Ccel_0537" + CDS 623680..624663 + /locus_tag="Ccel_0537" + /inference="protein motif:TFAM:TIGR00966" + /note="TIGRFAM: protein-export membrane protein SecF; + PFAM: SecD/SecF/SecDF export membrane protein; + KEGG: cth:Cthe_0903 protein translocase subunit SecF" + /codon_start=1 + /transl_table=11 + /product="protein-export membrane protein SecF" + /protein_id="ACL74919.1" + /db_xref="InterPro:IPR003335" + /db_xref="InterPro:IPR005665" + /translation="MVNLYAKRYYFFILSALIILAGVAMYFVEGFKLDIEFEGGTIIE + MRANEKMFTAANTQDLQTQIADFVTETINKPAKVQKSTAYDVSKNKNAESFDVITISI + GSKDTLSNSELTKVEEAVVKEFKLTAKDPVVSEESVEPYIGKEIMNNGLKAIVIAFIL + IILYVWYRFKAMSGLSAGVFAIVGVFHDLLIMLAVYVVFQIPLNESFIAAMLTVVGYS + MNDTVIIYDRIRENNRLLRKIPLPELVNSSIIQTLNRSINTVVTSLIAITTVYIFAKI + NGINSMEQFSFPLIIGIAAGCYSSIFISSPLYVMWKESQKKKKITGKTAKA" + gene complement(624798..625082) + /locus_tag="Ccel_0538" + CDS complement(624798..625082) + /locus_tag="Ccel_0538" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74920.1" + /translation="MNSNQNDKKAKLSMLKSAIYNMADLPKKMIKYATPIALLLIISG + TVFFIINRMSNSYSSIFDKTATSFIINSFYVLCEFLIAAFVIDIVIKRKT" + gene 625359..625649 + /locus_tag="Ccel_0539" + CDS 625359..625649 + /locus_tag="Ccel_0539" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:CTC02517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74921.1" + /translation="MRDYETNLIYTKKVVVSEGIVKELYLRYYLIAREQTNSLTTYGI + QVIMENDKGRIEKAFVPDVLSSETGINNLIYLLYSNSVTPVSVYDVIYDCIA" + gene 625885..627699 + /locus_tag="Ccel_0540" + CDS 625885..627699 + /locus_tag="Ccel_0540" + /inference="protein motif:TFAM:TIGR01391" + /note="KEGG: cth:Cthe_0896 DNA primase; + TIGRFAM: DNA primase; + PFAM: zinc finger CHC2-family protein; TOPRIM domain + protein; DNA primase catalytic core domain; + SMART: Toprim sub domain protein" + /codon_start=1 + /transl_table=11 + /product="DNA primase" + /protein_id="ACL74922.1" + /db_xref="InterPro:IPR002694" + /db_xref="InterPro:IPR006154" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR006295" + /db_xref="InterPro:IPR013264" + /translation="MANLFPDDLIEEIRVSNDIVGIISEYVKLEKKGKNFFGKCPFHN + EKTASFSVEPVKQIFHCFGCGKGGNVIHFIMSIENLEFPDALRFLADRAKILIPDMIE + GNRNDEKAGLKRELLQINLEAARFFRDNLNNDKNKLPNSYLINRKIQKNTVAKFGLGY + AEDRFDTLYKHLKAKGFSDTSIKNSGLVIYKEESGNIYDRFRGRIMFPIFDIRGNVIA + FGGRVLDSSQPKYMNSPETEVYHKGKHLYALNFAKNTCSRRLILAEGYMDVISLHQSG + ILNSVAPLGTALTENQGRLLKKYTEEIVLSFDSDSAGRAAAFRSLDLLNEIGCNVKVL + TIPSGKDPDEFIKAYGVAEFKRLVDRSESLLDFKLGSLKNDIDTSTNEGKVRFLDKAV + LILDKIDNNVEKELYVKKLSEELGVSTQSIFSEMAKQQRNSVIKVRQAASNKNFSRNQ + IRKSTVVKNQEERLVRLQLMLLATICLDNSVYFSIKGSFDWDKFDSDEIKKAFKFAVE + RIESKAGILTGEILNKLSPGMAESFANIVQSQSIFEDNKKAALDIIRNIDLFGLEERK + NEIIELKKRSDLTEGDVELLNRELSGIVSNIAIMKKGL" + gene 627725..628804 + /locus_tag="Ccel_0541" + CDS 627725..628804 + /locus_tag="Ccel_0541" + /inference="protein motif:TFAM:TIGR02393" + /note="TIGRFAM: RNA polymerase sigma factor RpoD; RNA + polymerase sigma factor, sigma-70 family; + PFAM: Bacterio-opsin activator HTH domain protein; + sigma-70 1.1 domain protein; sigma-70 region 3 domain + protein; sigma-70 region 2 domain protein; sigma-70 region + 4 domain protein; sigma-70 region 1.2; + KEGG: cth:Cthe_0895 RNA polymerase sigma factor RpoD" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 70 subunit, RpoD + subfamily" + /protein_id="ACL74923.1" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007050" + /db_xref="InterPro:IPR007127" + /db_xref="InterPro:IPR007624" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR009042" + /db_xref="InterPro:IPR012760" + /db_xref="InterPro:IPR014284" + /translation="MKHSQESRKALLKELIDRGKQKGMLTYKEIMDAFEEIELEPEHI + EKIYETLETMGVDVIGDIDSEMEEIQLTDEELDISVPEGVSIDDPVRMYLKEIGKVPL + LTADEEIDLAHRMENGDIEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLI + KAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLL + QELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAP + APAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI + RQIEAKALRKLRHPSRSKKLKDYLD" + gene 629074..629149 + /locus_tag="Ccel_R0016" + /note="tRNA-Asn2" + tRNA 629074..629149 + /locus_tag="Ccel_R0016" + /product="tRNA-Asn" + gene 629154..629230 + /locus_tag="Ccel_R0017" + /note="tRNA-Met1" + tRNA 629154..629230 + /locus_tag="Ccel_R0017" + /product="tRNA-Met" + gene complement(629306..629479) + /locus_tag="Ccel_0542" + CDS complement(629306..629479) + /locus_tag="Ccel_0542" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74924.1" + /translation="MSTFRKKHKENDIEHPMSSTLLGRDILGINPNNPALNKTTIDLQ + DEKLSTDYTCRVK" + gene 629611..630306 + /locus_tag="Ccel_0543" + CDS 629611..630306 + /locus_tag="Ccel_0543" + /inference="protein motif:PFAM:PF04816" + /note="PFAM: protein of unknown function DUF633; + KEGG: cth:Cthe_0893 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF633" + /protein_id="ACL74925.1" + /db_xref="InterPro:IPR006901" + /translation="MILNLKGRLRLIADKVPKCNTVADIGTDHAYIPIYLVQNGVCRK + AIASDIKIGPVKIANSNISLYKLAEKIETRIGDGLNTIEVGEADSIIIAGMGGTLLTE + LLEANKIKVVRATALVLQPMNDLDIVRKWLYDNAFDIYDEELVAEGPKFYCVLSAKFS + GSKKEYSDFDLHVGQGLINKKDVLLNQYCQMKVRQIDRVLEQLEGMEENVVLKNHYSR + LKKEYISLMEKIL" + gene 630335..631129 + /locus_tag="Ccel_0544" + CDS 630335..631129 + /locus_tag="Ccel_0544" + /inference="protein motif:PFAM:PF01784" + /note="PFAM: protein of unknown function DUF34; + KEGG: cpe:CPE2004 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF34" + /protein_id="ACL74926.1" + /db_xref="InterPro:IPR002678" + /translation="MNVGDIINFLNEIAPWRYAEEWDSVGLMVGSRESYVTKILLCMD + VTSDVISEAAQCGAQMILSHHPFIFSKLKSIDMETFKGEQIANLIKNNISVVSAHTNL + DTAPGGVNDTLAESLHLTNSRNLKPYMPKGLECDLGMGKVGELQNSKSFDEFVIDVKK + SLCIENLRIIGVKPKKVKKVAVFCGSFDDDLESLKSLKVDVLVTGDIKYHIALDAAQM + GLCIVDAGHFATERIILPKLRDTLNKRFKELDIICSKMETDPFTFA" + gene 631829..632524 + /locus_tag="Ccel_0545" + CDS 631829..632524 + /locus_tag="Ccel_0545" + /inference="protein motif:PFAM:PF05164" + /note="PFAM: protein of unknown function DUF710; + KEGG: cth:Cthe_2088 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF710" + /protein_id="ACL74927.1" + /db_xref="InterPro:IPR007838" + /translation="MTNRNKTEVYIYGSKYTISGTESEEYILKLALHVDKKMRKFAEA + NNALSSGMISVLAAINIADDYFKTLDKLQNITKNQHIETELMEKEYKQKVEELTLQIQ + KFKSDAVTMEEATTSQTYELEVIKNEFENKEKKLKQQIELLKIESGYKDEAIANQLEE + LENEHNQNKDELVDQIKRLKDENTSKEKAMTELYQKMEQLKSEYKQMEELYQEEYTQL + KDEYKKLEELMLK" + gene complement(632594..632785) + /locus_tag="Ccel_0546" + CDS complement(632594..632785) + /locus_tag="Ccel_0546" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: cbe:Cbei_0065 ferredoxin" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL74928.1" + /db_xref="InterPro:IPR001080" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MKASVDQEGCISCELCTSICPAVFSMNDDNKAEAIEEDIPEENL + QEAEDARDACPVSVIDLEE" + gene 632961..633818 + /locus_tag="Ccel_0547" + CDS 632961..633818 + /locus_tag="Ccel_0547" + /inference="protein motif:PFAM:PF04909" + /note="PFAM: amidohydrolase 2; + KEGG: cth:Cthe_1291 amidohydrolase 2" + /codon_start=1 + /transl_table=11 + /product="amidohydrolase 2" + /protein_id="ACL74929.1" + /db_xref="InterPro:IPR006992" + /translation="MNNNFEIIDCHVHTFANDDISAKIMTSFNKLYDIEFKNPGNGTI + PNVLKNMNEVGIDRTVMVNFAPPKILDSNNLWTIDTANSSEGRLVPLVNFHPDMEGCL + SEHFEKYVELGAKGIKLHPMAQGIDINDSRMDELYRKCSDNKFTILIHCGRVSNARLN + EFSDFQSLLPVIEKYPDIPIILAHMADGDKECVLKVSKQYENVYFDTSIVITGYPEIA + RVNEPSWLDDSEVVDIINEVGADKILFGSDFPWGSSVHDVKRFMKLKLNDQQKKTILS + ENSKRLFKL" + gene 633957..634808 + /locus_tag="Ccel_0548" + CDS 633957..634808 + /locus_tag="Ccel_0548" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein similar to fulmal1" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74930.1" + /translation="MKNKKLFISISYVVLLSLLIAGAILLSKPSKSNISPKNLLTEDN + FNNGILAYKSEINRKEDIKILNNPQNVDLQASLIENMNGEVTINISYKIDEKKLSRTI + DTSMIPEIRNLLRFREKYKKGYLIDKISVNNKAQRLYFYVRGKEDNRLTQTWLYTYNL + KTANVDKLYYDTGDFSEFYFSPDGKYNAFAYRNNSEKQMEGQKNKVVIIRCDDNKIIL + NGDKDINGKPIGQNSGLYIYRYDFQKWENTENCLLKQISEIKDGSHKIQEQKIYYNVV + ENKVKAR" + gene 634954..635553 + /locus_tag="Ccel_0549" + CDS 634954..635553 + /locus_tag="Ccel_0549" + /inference="protein motif:PFAM:PF03358" + /note="PFAM: NADPH-dependent FMN reductase; + KEGG: cth:Cthe_0870 NADPH-dependent FMN reductase" + /codon_start=1 + /transl_table=11 + /product="NADPH-dependent FMN reductase" + /protein_id="ACL74931.1" + /db_xref="InterPro:IPR005025" + /translation="MYIVGLNGSPNADGNTAFLVKKVLEECETRGAKTILLNVGKIMQ + EQKCGFCTVCSNPCTGNCYKGTKLEEAFEILRNADGVVVASPVYFGSVSAQLKAMFDK + TRKVRSNKGLYNKVGLCVAVGASQYGGEETTIKAMHDMMLVNGMIIVGDGYIDDNCGH + HGVCATRPSKDDEQAVKRAVMSAKRLIEVCKATEIIRQS" + gene 635606..636370 + /locus_tag="Ccel_0550" + CDS 635606..636370 + /locus_tag="Ccel_0550" + /inference="protein motif:PFAM:PF00899" + /note="PFAM: UBA/THIF-type NAD/FAD binding protein; + KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold" + /codon_start=1 + /transl_table=11 + /product="UBA/THIF-type NAD/FAD binding protein" + /protein_id="ACL74932.1" + /db_xref="InterPro:IPR000594" + /db_xref="InterPro:IPR005479" + /translation="MLHEFSRSELIIGTEGLEKLKNSKVAVFGVGGVGSFTVEALTRT + GVGHLVLIDDDCVCLTNLNRQLHATRKTVGKPKVEVMRDRVLEINPKCDVTIIQKFYM + PDVAEEILDSSFDYIVDAIDTVTAKIDLVVRANQFGIPIISAMGAGNKTDPTRFQVSD + IFKTTVDPLAKVVRKELRNRGIKKLKVVYSTEEPIKPVETDTSSCSAGCICPKGTARK + CTVKHQIPGSLSFVPSVMGLIIGGEVIKDLIGFIKD" + gene 636394..637074 + /locus_tag="Ccel_0551" + CDS 636394..637074 + /locus_tag="Ccel_0551" + /inference="similar to AA sequence:KEGG:Cthe_0869" + /note="KEGG: cth:Cthe_0869 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74933.1" + /translation="MFDKRINIFTGHFGSGKTEVAVNYAMKMSEAGYRTAIVDFDIIN + PYFRTADAKDTLEEQSIKVILPMYANTNVDIPAIPPEIYSLFEDKDIKVVLDVGGDDL + GAKAVSRFKEEIISDDYEMFFVINTKRIMTDSPEKIIEMIALIEEGANIKVTKLLNNS + NLLEETTPEIILEGNRIISQVSKKSGIPIAITAGMEEVVNSIKKSEIATTEILTMRKQ + IHLPWNRG" + gene 637082..638749 + /locus_tag="Ccel_0552" + CDS 637082..638749 + /locus_tag="Ccel_0552" + /inference="protein motif:PFAM:PF00488" + /note="PFAM: DNA mismatch repair protein MutS domain + protein; + KEGG: cpy:Cphy_2383 DNA mismatch repair protein MutS + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="DNA mismatch repair protein MutS domain protein" + /protein_id="ACL74934.1" + /db_xref="InterPro:IPR000432" + /translation="MKFFYIILAITAGCIILSIIGKISRTNKNRKQIRAQWGKAPVTK + YTADIYNSVRNYFDNNKDQGESFFIDDITWNDLDMNRIFSRLNITCTDVGEEYLYNIL + RELLYDQNELTERDRLIEYFRTNPSQREKIQLILSGLGKLRYLSISEYINGKRSGGGI + KSIYYKILSLIFIASIFATIFYPGAIAIFLISLAVNVVVYFKARDQIVGHLQSLGYIV + NMLGISRRISKLNIKELNTYLNELKKCTAKVKGISVNAFYFLFYTSENYLFELIKIFL + LGEPIAFHSIFKIVNKYRHEIDSVYRTIGLLDSLISVASYRESLDYFTTPVLTKDNIN + NKKIEFTDMYHPLIKNPVTNSFSVTGGALITGSNASGKSTFLKSVAINAIFAQTIFTC + LAKDYYSSYFNIYSSMALSDNLEMNESYYIVEIKSLKRILKGLNDHVPCFCVIDEVLR + GTNTIERIAASSEIMNFITDNNCICLCASHDIELTQILADKVENYHFQEFFEDDNIKF + DYKIYPGKSTTRNAIKLLKILGYDESIVDNAEQRACQFNQNGYWSKV" + gene 638880..639086 + /locus_tag="Ccel_0553" + CDS 638880..639086 + /locus_tag="Ccel_0553" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: cth:Cthe_0867 2-oxoglutarate ferredoxin + oxidoreductase, delta subunit" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL74935.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MAKVIFHEERCKGCKLCVTVCPKKIVIMKSDKLNQKGFHPAGVE + EVDKCIGCAFCATICPDCVIEVEK" + gene 639165..640223 + /locus_tag="Ccel_0554" + CDS 639165..640223 + /locus_tag="Ccel_0554" + /inference="protein motif:PFAM:PF01855" + /note="PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein; Transketolase domain protein; + KEGG: cth:Cthe_0866 pyruvate flavodoxin/ferredoxin + oxidoreductase-like protein" + /codon_start=1 + /transl_table=11 + /product="pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein" + /protein_id="ACL74936.1" + /db_xref="InterPro:IPR002880" + /db_xref="InterPro:IPR005476" + /translation="MAEKLLMKGNEVIAEAALRAGCRHYFGYPITPQTEVAHYMAKAM + PKINGTFVQAESEVAAINMVYGAAAAGARVLTSSSSPGVSLKQEGISYIAGAELPAVL + VNIVRCGPGLGGILPAQCDYFQSVKGGGHGDYKNVVLAPSSVQELYELTVEAFNISDK + YRILTIILGDGMLGQMMEAVEFKDKEDIYQDDKKWACTGTKMERESNDVTSIYIQPEV + LENHNLKLQAKYKKIEENETRVETYNCENADIIVTAYGTVARIVKNVIKMAEKEGIKV + GLIRPISLWPFPTAAFEKYAETPKAFLSVELSAGQMVEDVRLAVNGKRPVHFYGRMGG + MIPSQKEVLDKIKEILNK" + gene 640244..640990 + /locus_tag="Ccel_0555" + CDS 640244..640990 + /locus_tag="Ccel_0555" + /inference="protein motif:PFAM:PF02775" + /note="PFAM: thiamine pyrophosphate protein domain protein + TPP-binding; + KEGG: cth:Cthe_0865 3-methyl-2-oxobutanoate dehydrogenase + (ferredoxin)" + /codon_start=1 + /transl_table=11 + /product="thiamine pyrophosphate protein domain protein + TPP-binding" + /protein_id="ACL74937.1" + /db_xref="InterPro:IPR011766" + /translation="MATVFKKPHALKDLSLHYCPGCTHGIIHRIVAEVIDELGIEGTT + IGVSPVGCAYNNYEYFHVDMVQAAHGRAPAVATGIKRVHPDNYVFTYQGDGDLAAIGT + AEIIHAATRGEKITTVFVNNAIYGMTSGQMAPTTLMNQVTTTSPYGRKPEIHGFPIKV + CELLSQLEGAVYVERTSVHDVKNIKNTKEAIKKAFQVQKANKGFSIVEVLSTCPTNWG + LNPVDSLKWLENNMLPFYPLGNFKGKDLEV" + gene 640993..641526 + /locus_tag="Ccel_0556" + CDS 640993..641526 + /locus_tag="Ccel_0556" + /inference="protein motif:PFAM:PF01558" + /note="PFAM: pyruvate ferredoxin/flavodoxin + oxidoreductase; + KEGG: cth:Cthe_0864 2-oxoglutarate ferredoxin + oxidoreductase, gamma subunit" + /codon_start=1 + /transl_table=11 + /product="pyruvate ferredoxin/flavodoxin oxidoreductase" + /protein_id="ACL74938.1" + /db_xref="InterPro:IPR002869" + /translation="MKQLELIIAGFGGQGILSAGRLLAYAGMLEGKNVSWLPSYGPEM + RGGTANCSVVISDEPVGSPILDTTNVLVVMNGPSLEKFEKSVVSGGLIISDSSLVEAK + PKRTDIEFIGIPATQLASDMGNLTFANIIILGKLLAKTGIVSKESFEAALKKVLSPKK + HHMIPDEMKALVMGHDY" + gene 641686..642363 + /locus_tag="Ccel_0557" + CDS 641686..642363 + /locus_tag="Ccel_0557" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: ckl:CKL_3392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74939.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSILKTDGLRKYYGKGENLVKALDGINLEILEGEFVAVVGTSGS + GKSTLLHMLGGLDKATEGKVTVAGKEFFDMNDEQKTVFRRRNIGFIFQNYNLVPILNV + YENITLPVELDGGTIDKAFIDDIIKTLGLGGKLTNLPNNLSGGQQQRVAIARALATKP + AIILADEPTGNLDSKTGLEVVGLLKMTSKRFHQTIVMITHNEEIAQLADRVIRIEDGK + IVGGEDK" + gene 642360..644855 + /locus_tag="Ccel_0558" + CDS 642360..644855 + /locus_tag="Ccel_0558" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: ckl:CKL_3391 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL74940.1" + /db_xref="InterPro:IPR003838" + /translation="MMFPTDNRLVIKKITVRTIKANKVRNIFVITAIALTAFLLSTIF + SIGISGTESIQLQKIRTMGTIEHGGLTFPTDEQIKKLKSLDYIEDVGIMAHAGDIIET + PDMGNLSLSLFWFDKTEWEKLRVPAMNNIKGKYPQEYNEIMVSDWILKRIGITNPKIG + MDIPIKYGKVGGTDSEATNENFKLSAYYTEYSNLRSGNAGMLYVSKAFLDKNGVTPEN + SGTATIRFKSQKNIGEQFEKLSREVTASPNQKWKMVPLYETVNGDRLSTIIGLSALIL + FIMLSSYLLIYNVLYISVSKDVRFYGLLKTVGTTPKQIRAIVTGQAMRLTALGIPLGL + ALGAAVSFVAVPFALSGATIDTGIKISFNPIIYVGAAVFSLVTTLISSIKPAGMAATI + SPIEAVRYTGTDVSRKLRKVSKVGKVQKMAFRNVFRNRRRAAVVFLSLFMGITTFILV + NTLVLSMDTENYVNSYIDNDFTLTNNTFFQNGTGIKQKFDNDFMSTFKRIEGITEIRK + VSQKIVTLKYDDNLYKEHLEEFGKRHNTQMPTGDEIEKNPRFFWSNLVGLDMEYIKKL + NKTLGEPIDVEAFEAGRIALFSTNNPKHFKVGSDIVFTADEKEYSLKLGGFLPERTAF + NGGMGPAPLVYISNDYMKKLFNNPVFCSVTMNAEVDKEAHVLKQLKELTANDNEISLD + SRLETLEQFRSSKTMLYILGGGMSLILALIGILNFVNVMVTGVNTRRHEFAVLESIGM + TPRQLKRMLSLEGLIYAIISCGLVATLGAALNIWVFSLFKKQADYAIFTFPTIPLVLS + VVIVFAVCILVPVAAYVTTTKDTVTERLRSVEG" + gene 644903..645589 + /locus_tag="Ccel_0559" + CDS 644903..645589 + /locus_tag="Ccel_0559" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cdf:CD1957 two-component response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL74941.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MARILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNN + NFELILLDINLPDRSGLELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKP + FSLEVMNRRIQAVLRRTGTEDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTL + LTQNSGQVLTRDIILQRLWGTDEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGI + GYTWGEESCR" + gene 645589..646614 + /locus_tag="Ccel_0560" + CDS 645589..646614 + /locus_tag="Ccel_0560" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase A domain protein; + KEGG: spj:MGAS2096_Spy1107 two-component system histidine + kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL74942.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MKEIKKSEVALIAVIYGLCIGFMVYQLMVAKNFQAVIISIVFTA + VIAVLIAVLISMLHRYMQSVMVRLSDMVASLIDMRETEVFSVLNDDLLSKLQSQVLKL + LRILKSQNTKLHNEKNEIKSLISDISHQLKNPLANLNIYVSLIKEEDIAPAMRKEYLK + NIENQLEKLNWLMESMIKMTRLESGIIRLNREMSSLNDVLLTSLKQIYQKALKKNIDI + VFIPSEKDIKMSIDIRWTAEAITNILDNSVKYTQESGKIKIQVHKYELFARIDIEDNG + AGFDEKEVNDIFKRFYRGKNSNWIDGVGIGLYLTRRIISMQDGYIKAKSILGKGSTFS + VFLPLES" + gene complement(646686..648779) + /locus_tag="Ccel_0561" + CDS complement(646686..648779) + /locus_tag="Ccel_0561" + /inference="protein motif:PFAM:PF00120" + /note="PFAM: glutamine synthetase catalytic region; + KEGG: tpd:Teth39_1666 glutamine synthetase, catalytic + region" + /codon_start=1 + /transl_table=11 + /product="glutamine synthetase catalytic region" + /protein_id="ACL74943.1" + /db_xref="InterPro:IPR008146" + /translation="MNLISQIFGSNVYNDSVMRERLPKATYKALKKTIDEGLPLDFEI + ADVVASSMKDWAIEKGATHYTHWFQPMTGITAEKHDSFINATADGKAILEFSGRELIK + GEADGSSFPSGGLRVTFEARGYTAWDCTSPAFIKNNTLYIPTAFCSYTGETLDKKTPL + LRSIECLSKNAVRVLKLFGNENVTKATPTVGAEQEYFLIDKKMYDKRKDLIFTGRTLF + GSKAPKGQEMDDHYYGSIKARVSSFMKDLDRELWKLGIFAKTEHNEVAPAQHELAPIF + TTSNIATDHNQLIMELLKTVALKHGLVCLLHEKPFAGVNGSGKHNNWSLSTNDGQNLF + DPGKTPHENVQFLLFLCAVIKAVDEYADLIRLSGANPGNDHRLGTSEAPPSIISIFLG + DELTKILEQIVSGENIETNCLEKLMVGVKTLPELRKDTTDRNRTSPFAFTGNKFEFRM + VGSSASIASANFFLNTAVADVLEQFADRLEKAKDFSKEVNSIIKDVVKENGRIIFNGN + GYSDEWVKEAERRGLPNIKSYVEAIACLLKEKNIAVMEKQKVFSRVEMHSRYEISLEK + YIKTINIEAMTMLEISKRQLLPACIKFETEIARSINEIKNCGVEVDISANTDLLKETA + SLVSQFKKEISLLENSLSKAQHSFEDTFEQAMFYRQDVFARMETLRTVVDELECIVAS + SIWPIPTYADILFNI" + gene 649040..650236 + /locus_tag="Ccel_0562" + CDS 649040..650236 + /locus_tag="Ccel_0562" + /inference="protein motif:PFAM:PF01841" + /note="PFAM: transglutaminase domain protein; + KEGG: cno:NT01CX_1704 transglutaminase-like enzyme, + putative cysteine protease" + /codon_start=1 + /transl_table=11 + /product="transglutaminase domain protein" + /protein_id="ACL74944.1" + /db_xref="InterPro:IPR002931" + /translation="MINILTNPVNLILILPVLVTLLSSLITKYNRERVIKSFYSIINN + IELITGLLIALFLTKGILFDNNYRLFIYIRNHMPETVKASLEANNIYTYLCVAFIVLL + IVVLIIKAVMYPLYKHVFGTMAQGIYKVMSSMSSVTRRIIAFVCSIPKAAVSLICISF + VLYFFSYYFTVPGLSMWIDDSAVLRGVYKTALKPVVESDIAKKIPVIINDRFVSPTMN + GQEVEIAENIRDTLDSYNIKVIQYFNGVTLDDAVKSNDEIDKLALELTKGKTGDYEKA + KAIYKWITKNIKYDYPKAKQIAVKTEGTKSGSIICYETRKGICFDYSSLFISMCRANG + IKVRLVTGLGYSGLAWGDHAWNQFYDNAQKKWVNVDCTFGVSGNYFDSAKFSLDHKGD + RVQEEW" + gene complement(650240..650560) + /locus_tag="Ccel_0563" + CDS complement(650240..650560) + /locus_tag="Ccel_0563" + /inference="similar to AA sequence:KEGG:Cthe_0862" + /note="KEGG: cth:Cthe_0862 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74945.1" + /translation="MVNHYHFYKFNCLTGEKHSHRLTGYTEYMFGIGLFHFHIYFGTT + SFNGHWHMYSGITGLSVKTSHGHKHKIAGRLNIVNSHCHYYENYTHENIEYKGGKTLK + RVLS" + gene 650712..650975 + /locus_tag="Ccel_0564" + CDS 650712..650975 + /locus_tag="Ccel_0564" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74946.1" + /translation="MEPIIAIVLLVANIPVYKKILRIIFRDQEDVNDSIKYSFTPDLF + SFFKGNYWKDKIGEAKITAFIFCCVSVVVIELLIIKWIIAIIV" + gene 651027..652220 + /locus_tag="Ccel_0565" + CDS 651027..652220 + /locus_tag="Ccel_0565" + /inference="protein motif:PFAM:PF00557" + /note="PFAM: peptidase M24; + KEGG: pca:Pcar_2614 Xaa-Pro aminopeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase M24" + /protein_id="ACL74947.1" + /db_xref="InterPro:IPR000994" + /db_xref="InterPro:IPR001714" + /db_xref="InterPro:IPR013838" + /translation="MREILNREELKNRVKRLCAIATDKYPDWDAILIIGRINQYYLTG + TMQDGLIIIKRNGTLMYFARRSYERAKKESPISECIYPMGKYSDAAEICGKQLGNVLM + DTDIATIEVLDRLKVHFKINEIYPIKKILSEVRSIKSPYELEAVKDAGKRHQYLLEEV + VPNLLREGMSEVELSAELFEKMLKLGHNGVSRFNSFQTEMVIGQIAFGANSLYPTNFD + GPGGMKGLNSAVPLFGSHNALLKKGDLVFIDVAFCMEGYHSDRTQVYMFGSKPSDEIL + KTHRKCVEIQKRTAALLKPNSIPSDIYSSIMSSLDSEFIENFMGFGERRVSFLGHGVG + LYVDELPVIAKGFDKPIKENMVFALEPKKGISQVGMVGGEDTYIITPDGGECITGGGK + DIISV" + gene 652235..652739 + /locus_tag="Ccel_0566" + /pseudo + gene 652866..653642 + /locus_tag="Ccel_0567" + CDS 652866..653642 + /locus_tag="Ccel_0567" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: cth:Cthe_0557 polysaccharide deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL74948.1" + /db_xref="InterPro:IPR002509" + /translation="MKIRLLWAKAKNIPKKVMIIFLLISALFVSIGYTAKSAGVFNPS + KHLPIYSVETEQNAVSITFDCAWGADDIPQILDTLKKDSIKATFFMVGQWAEKFPDAV + KLMANEGHDIANHGYSHLRMSTISKEKCKSEIEMCNKKLEEISGTKINLFRPPYGDYN + NTVIDTCNEMGCYPIQWNVDSLDWRKEMSRQAILDRILKRTKPGAILLFHNDTQYTAQ + LLPEIIKGLKSQGLTFLPVSQLIMKDNYYIDDQGRQQRKK" + gene complement(653689..654180) + /locus_tag="Ccel_0568" + CDS complement(653689..654180) + /locus_tag="Ccel_0568" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: noc:Noc_A0010 restriction endonuclease" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74949.1" + /translation="MMLLLYFILLISFKVFDITKDYLYKRKINELLKVIDSKEDLLYL + NFRDYMSIIVEVLKRNGYKIKSTRECGIDGSGLILNNIQFAEIWKHGLKQIVDVELAM + NLAKCMQRNSVYRGMIITLGDFKPCTRVFCHKNVIECINGDELLNMCKAVQKTKVILQ + PAK" + gene 654800..656440 + /locus_tag="Ccel_R0018" + rRNA 654800..656440 + /locus_tag="Ccel_R0018" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 656638..656714 + /locus_tag="Ccel_R0019" + /note="tRNA-Ile1" + tRNA 656638..656714 + /locus_tag="Ccel_R0019" + /product="tRNA-Ile" + gene 657239..660282 + /locus_tag="Ccel_R0020" + rRNA 657239..660282 + /locus_tag="Ccel_R0020" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 660534..660649 + /locus_tag="Ccel_R0021" + rRNA 660534..660649 + /locus_tag="Ccel_R0021" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(661635..661710) + /locus_tag="Ccel_R0022" + /note="tRNA-Trp1" + tRNA complement(661635..661710) + /locus_tag="Ccel_R0022" + /product="tRNA-Trp" + gene 661867..662598 + /locus_tag="Ccel_0569" + CDS 661867..662598 + /locus_tag="Ccel_0569" + /inference="protein motif:PFAM:PF05949" + /note="PFAM: protein of unknown function DUF881; + KEGG: cth:Cthe_1076 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF881" + /protein_id="ACL74950.1" + /db_xref="InterPro:IPR010273" + /translation="MKVKDNLIILFIIFAVFGMLVTVQIRSTVSMQKQSALTLDYNRL + KNQLDSRVKEGERYKAQIAELEHKKEDFLKAYPGTNSSNTLKNDLDYLKFISGLTDVT + GEGVVITLNDAENPDLESQMNYIIHDYEIYGIINDLRDAGAQAISINDERLIATSEQI + CAGPTIKINNNRYAVPFEIKAIGDPDKLHSAMKNSDVVSSLIQYKKRVTVESQSNIVI + PKFMNDINGLISKLEVAENESKKEQ" + gene 662576..663286 + /locus_tag="Ccel_0570" + CDS 662576..663286 + /locus_tag="Ccel_0570" + /inference="protein motif:PFAM:PF05949" + /note="PFAM: protein of unknown function DUF881; + KEGG: cth:Cthe_1075 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF881" + /protein_id="ACL74951.1" + /db_xref="InterPro:IPR010273" + /translation="MKAKRSSRNISIALVCVILGLALSWQFQSIRNNAKVMTLENQKK + DDLVVKILNEQKNNENLRAKLNELQTQLSKFENARGNSDENIKLLSDEIQKLKTVAGL + TKVKGKGVIVTFSKDDALSVEDNDLLFVLNELRATDAQALAVNDQRIIDTSEVRGSGG + GGYININGRHVLPPYVIKAIVDPDDAVNALNMVGGVFEQIKVFIDVSVQKSDNIEIPP + IGEELIKTDKLKIVENNN" + gene 663461..664390 + /locus_tag="Ccel_0571" + CDS 663461..664390 + /locus_tag="Ccel_0571" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: cth:Cthe_1074 polysaccharide deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL74952.1" + /db_xref="InterPro:IPR002509" + /translation="MKKNKAITVLAVIVGIALIFVFFIIKKNRNPKLDSVLSDFGGVY + SVSSKNVDFSTELTGRLIEGNRLAIDRDLSDKSSYPNDKKRCWGMARQPNNQIPRADP + GTPELLSKYGAKYLGDVSKKIIYLTFDEGYENGYTGQILDTLRDNNVKAAFFITGPYL + KEHQDLVRRMVEEGHTVGNHTIHHPSLPEKNDTQIEEEVVGLDRAFSEKFGVRMNFLR + PPKGEYSERTLSITSKLGYCNLFWSFAYDDWYRDRVRGPEYTYKVVMRNLHNGEVMLL + HAVSKDNADALGMIIKGARENGYEFGNVRDLAN" + gene 664421..664744 + /locus_tag="Ccel_0572" + CDS 664421..664744 + /locus_tag="Ccel_0572" + /inference="protein motif:TFAM:TIGR02856" + /note="TIGRFAM: sporulation protein YqfC; + PFAM: protein of unknown function DUF1429; + KEGG: cth:Cthe_1073 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YqfC" + /protein_id="ACL74953.1" + /db_xref="InterPro:IPR009877" + /translation="MNSAGRSKKKSKTPSEKNNKPKLREKITEMLELPKEIVLNMPKL + VMLGNGDVIIENYKGIVEYAEGFIRVNTTAGIIKLTGTDIYIKEITAENIMVYGNILS + LEFLK" + gene 664778..665974 + /locus_tag="Ccel_0573" + CDS 664778..665974 + /locus_tag="Ccel_0573" + /inference="protein motif:TFAM:TIGR02876" + /note="TIGRFAM: sporulation protein YqfD; + PFAM: putative stage IV sporulation YqfD; + KEGG: cth:Cthe_1072 putative stage IV sporulation YqfD" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YqfD" + /protein_id="ACL74954.1" + /db_xref="InterPro:IPR010690" + /translation="MLVWRLWNYIIGYVIIIVEGYFLEKFINICTHRQIKLWNVKWNS + SSKLTMKISINDFRKLRPVAKKSRCRVHISKKKGLPFLIYKYKNRKAFIIGSAACIIT + FFIISSFIWDVSVTGNEKVSTEIILGKLYENGIKPGAFKFSINPDNVIDNIMLGINDL + SRISVSVRGTRVFVDVSERVKPPDLIDKKIPCNLIAAKDGVIYSIVAKEGLETVKIGD + TVTKGQLLVTGTIENVKNPEAPPLMVHSMGAVKARTWYEASNQVEQTLVKTRRTGLEK + ERYSVIFFTKKINLFHRKITYNNIEHIEYKKKLSIGKNFALPVEWVVDKYYEYELIQE + KLDIDRAKQLAAEKAFKQVQDLIPQGAEMAKKNVYFTEKDDGKITATVTVECIEDIGV + TQMIGG" + gene 665981..666949 + /locus_tag="Ccel_0574" + CDS 665981..666949 + /locus_tag="Ccel_0574" + /inference="protein motif:PFAM:PF02562" + /note="PFAM: PhoH family protein; + KEGG: cth:Cthe_1071 PhoH-like protein" + /codon_start=1 + /transl_table=11 + /product="PhoH family protein" + /protein_id="ACL74955.1" + /db_xref="InterPro:IPR003714" + /translation="MADITEKSVEFYTIEHAMNVFGNYDENIKIIEEAFNVKVLTRGT + SIRISGHSKNVSNAETIVNKLLDIAKQGQSITRQNVLYLVGLSNEQQIDKADEILTDY + VCLTAKGKQIKYKTHGQKVYVDAMKKNDIVFGIGPAGTGKTFLAVAMAVTAFRNKEVD + RIILTRPAVEAGEKLGFLPGDLQNKVDPYLRPLYDGLYEIMGADLYMKYLERGMIEIA + PLAYMRGRTLDNSFIILDEAQNTTPEQMKMFLTRIGFNSKAVITGDITQVDLPGDKKS + GLREVTNILNGIEGISFVNLTEKDVVRHELVQKIIVAYDKYDSNKK" + gene 666972..669209 + /locus_tag="Ccel_0575" + CDS 666972..669209 + /locus_tag="Ccel_0575" + /inference="protein motif:TFAM:TIGR00277" + /note="KEGG: cth:Cthe_1070 metal dependent + phosphohydrolase; + TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + metal-dependent phosphohydrolase 7TM intracellular region; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL74956.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /db_xref="InterPro:IPR011621" + /translation="MIKKKKSNGRLKKITKNFAFQRAFLAIITVLIAFFIIQTGAIPK + KYRLSVGDVSTYDITAPRDLVNEVLTEKNRISARDNVEPVNREDTKAFVEVIYKKDDF + FRAVSSARESIEKNLRQLGVNSNTKDYDVYLKQVREEAINSLTEQVAKLNIPLSADQI + NFLVSKVSDSELDSFEEITRQLISDSMSEEVTESNLAIHIHRLQNSYQSEQGISQELK + NIGNQLVKAILKPNRVIDQEATEKKQQEAYNNDANIVKIKKESRIISFGDVVTEDKLQ + LLEELNLLETRSKYDYLFSIGILATILFLTGLVIVFLNKYHKKIYNDRNDLLLLSLIV + SIILVLARCLYPYYEGLVIPIFVGTMLVSILLNMELAIVINCVLTVGISIMIKGDNKF + LFMGLICGVISAFLVTKASQRSKLSMNGILLGLINVVLIVALNFIHKSDVQTIITDSV + AVFLNGLISMVLTIGFLPFLESVFNIVTPLKLLEISDPNHPLLKRLLIEAPGTYHHSL + MVGNLAEIATEDIGGNALLSRAGAYFHDVGKLKRPDFFKENQLNENPHDRMTPNLSTL + VITSHAKDGVDIAIKYKLPTAIRDIIKQHHGTTLVAYFFHRAMKAGGDDEIKQENFRY + EGPKPQTKEAAVVMLADSVEAAVRSMTDKTEGKIEGLIRKIIKDKLDDGQLDMCQLTL + ADLDTIAKSFMRVLSGYFHAREQYPEIKDALKKDIFIEEKGEYNNEKETEEKRTGGGA + KLDNN" + gene 669196..669681 + /locus_tag="Ccel_0576" + CDS 669196..669681 + /locus_tag="Ccel_0576" + /inference="protein motif:PFAM:PF02130" + /note="PFAM: protein of unknown function UPF0054; + KEGG: cth:Cthe_1069 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0054" + /protein_id="ACL74957.1" + /db_xref="InterPro:IPR002036" + /translation="MIIIENEQNKVIVDKKIESLIEKTIKLCMKSEKLDKDYEVNVLI + VDDEEIRGINKEHRDTDKSTDVLSFPMVNFKDGKLISDEGDYDLEMGELILGDIIISA + ETAQRQAEAYGHSFEREMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILIEIGLPR + D" + gene 669696..670070 + /locus_tag="Ccel_0577" + CDS 669696..670070 + /locus_tag="Ccel_0577" + /inference="protein motif:PFAM:PF01219" + /note="PFAM: diacylglycerol kinase; + KEGG: cbt:CLH_0872 diacylglycerol kinase/PAP2 family + protein" + /codon_start=1 + /transl_table=11 + /product="diacylglycerol kinase" + /protein_id="ACL74958.1" + /db_xref="InterPro:IPR000829" + /translation="MKNRNIIESFNNAVQGIWYTILNERNMKIHLITGAFVILLSLWV + QVSKIELTIICLTIAMVICFELINTAVEVVVNIIVDVYHPKAKIIKDVSAGAVFISAV + FSIAIGILILADKIIYKLTLLL" + gene 670090..670479 + /locus_tag="Ccel_0578" + CDS 670090..670479 + /locus_tag="Ccel_0578" + /inference="protein motif:TFAM:TIGR01354" + /note="TIGRFAM: cytidine deaminase; + PFAM: CMP/dCMP deaminase zinc-binding; + KEGG: cth:Cthe_1068 cytidine deaminase" + /codon_start=1 + /transl_table=11 + /product="cytidine deaminase" + /protein_id="ACL74959.1" + /db_xref="InterPro:IPR002125" + /db_xref="InterPro:IPR006262" + /db_xref="InterPro:IPR016192" + /translation="MTEIELASRARKAMDTAYAPYSKFRVGAALLTASGRVYTGCNIE + IASFGATNCAERTAIFKAVSEEGRIKIDKIAIASDDEDYIYPCGICRQVMAEFADDEM + ELICTRKNGEYKKMRFGDLLPNAFRTF" + gene 670501..671397 + /locus_tag="Ccel_0579" + CDS 670501..671397 + /locus_tag="Ccel_0579" + /inference="protein motif:TFAM:TIGR00436" + /note="TIGRFAM: small GTP-binding protein; GTP-binding + protein Era; + PFAM: GTP-binding protein HSR1-related; KH type 2 domain + protein; Miro domain protein; + KEGG: cth:Cthe_1067 GTP-binding protein Era" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein Era" + /protein_id="ACL74960.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR004044" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR005662" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR013684" + /translation="MSYKSGFVSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTI + RGVITNKECQLILIDTPGIHKPKTKLGEYMVNVASETIKEVDLILFLVEANTQPGAQD + VNIIQQLKQIKTPVFLILNKVDLISKDKLLAIIDSYSKLMDFKAIIPISALKNDGIDL + ILKEALDYIPEGPQFFSEDMLTDQPEKVIAAEMIREKVLLNLDDEVPHGVGVEVTSFK + EREDGLINIQATIYCEKSSHKGIIIGKQGNMLKKIGSAARYEIERLLDTKIFLELWVK + VKPDWRNSDNMLKTLGYKTNKN" + gene 671486..671620 + /locus_tag="Ccel_0580" + CDS 671486..671620 + /locus_tag="Ccel_0580" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: afl:Aflv_0851 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74961.1" + /translation="MLLDFVWNVFKTTGSIDSYVLMKEIEEKFKSETAENVMREETEV + " + gene 671639..672391 + /locus_tag="Ccel_0581" + CDS 671639..672391 + /locus_tag="Ccel_0581" + /inference="protein motif:TFAM:TIGR00613" + /note="TIGRFAM: DNA repair protein RecO; + PFAM: Recombination protein O RecO; + KEGG: cth:Cthe_1066 DNA replication and repair protein + RecO" + /codon_start=1 + /transl_table=11 + /product="DNA repair protein RecO" + /protein_id="ACL74962.1" + /db_xref="InterPro:IPR003717" + /translation="MSYVNYKGLVIKEINTGEADKIITVLTAEEGKISIAAKNARRAK + SSLGAGSQLFAYSDYMLFKGKELYNMSSCQVIEPNYEIRNDIEKLIYCSHILELILDN + VQEGEPSEEILQLLLNTLYVISKTNRPLNLVTRVFELRLMSLLGYEPHVISCVNCGKA + QDENMYFDFDSSGLICKKCLNPRSRSFLLLPGTVKALKYIMCISPQKLFNFSLSQESI + KELGEISKRYIKEHIGKEYRKLDYLKQLKLDG" + gene 672410..673870 + /locus_tag="Ccel_0582" + CDS 672410..673870 + /locus_tag="Ccel_0582" + /inference="protein motif:PFAM:PF00614" + /note="PFAM: phospholipase D/Transphosphatidylase; + KEGG: cno:NT01CX_1068 cardiolipin synthetase" + /codon_start=1 + /transl_table=11 + /product="phospholipase D/Transphosphatidylase" + /protein_id="ACL74963.1" + /db_xref="InterPro:IPR001736" + /translation="MNTNLYSALSLIIIISNSIFIITALFFERKKPVRALSWILALTL + LPVAGFLLYMIFGRPLNLKKRKFHIKNHKDVEYSREIYQTLGKVSYDEAMFKESYNHY + VKQLINFNISLSQSPFTNDNKVEIFTKTQDKYDSLLKDIEGAETSIHMLYFIIKNDKI + GTKLINTLASKAKDGITVRVLFDHGQNLLFPYRAFKPIIDNGGEVLSFFSNSIDNYLK + ANYRNHRKIVVIDGRIGYVGGINIGDEYLGLHKRIKPWRDTHLKVTGSSVYCLQLRFM + TDWLYASKKEVDFGRLDKYFRPIRKEEGGDVAIQMVSSGPDTNAEEIKRSMIKMINSA + KYSILIQTPYFVPDDPFLEALQNAAMSGVKVIIQIPEVPDKRLVYKVTTSFIEDVMDF + GVKVYLYPGFLHAKMIVIDDTCCSIGSANTDMRSFSLDFEINAFMYGHNITEKCSTIF + YNDLNICREVTEENYKKRGLLSKTLESICRLLSPLL" + gene 674523..676274 + /locus_tag="Ccel_0583" + CDS 674523..676274 + /locus_tag="Ccel_0583" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_2144 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL74964.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MFKLIKYLKPYMKQVVLGPAFKLFEAILELTIPLLMAKLIDNGV + KANNPSYVYMMGGIMVAIAITGAGSAYICQYYASIASQGFGTSMRNLLFKKIQSYSFN + ELDKFGTPSLINRITSDVNQLQLAVAMLIRLVVRVPFLCIGGLIMAMTINLKLSVILF + ITMPFFALFIYFIMSRTIPLYKTVQRKLDTLSVIIRENLSGVRVIRAFAGLDKERERF + TKGNREYADMSIRVGRISALLNPATTVIVNLGVAAILWFGGIQVYHGAMTQGEIIAYI + NYINMILSALILLANLVVTFTKAAASANRVNEILEIQPSVEDRPDRDVNVRVVGNGLS + GIPLIEYRNVSFTYDGSSEYALKNISFQIKEGQTIGIIGSTGSGKSTLVNLISRFYDT + TDGQILINGTDIRDLKQKDLRDRIGHVPQKSVLFSGTIEENIRWGNEFAPEPDIYWAT + EIAQALDFIKQKPEGFKTVVTQGGANLSGGQKQRLAIARAIVKRPEILILDDSTSALD + YATDAALRKQIKDKLKGLTIIMVTQRVAAIRDADLIVVLDDGEIVGIGGNEELLETCP + VYQEIYYSQRKSEVAQK" + gene 676271..678019 + /locus_tag="Ccel_0584" + CDS 676271..678019 + /locus_tag="Ccel_0584" + /inference="protein motif:PFAM:PF00664" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_2145 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter transmembrane region" + /protein_id="ACL74965.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MKSDAVRRLGRYILTNKPYLLGAVIFAALSNILMVAGPFIIGKG + VDAIVGKGHVDFKIILYVVIIIFILYLISAIFQWSLQVITAILSNRTVEKLRKDVFNH + IMEAPLRFFDHKPHGDIMSRLTNDMENIGEGIYQSVTQFFAGIISILGSLIFMFVLNP + WITLIVIVMTPVTFLIASFITKRSSKMFKEQSRVNGELNGYIEEIIGNQKVVKAFNYE + EKTQQKFEEINRRLYKCGRWAQFYSSLVNPSTRLVNNITYVLLGMTGGIASLAGRLSI + GYISSFLTYSTYFSQPINNVTSVTTQIQSAIASAERVFAVMDEEVEKQSDNDGITLSK + TNGNVRFEDVSFSYSPEKPLIQNFNLNVKEGQRIAIVGPTGSGKTTLVNLLMRFYDTD + KGYIFIDDKNINKISKDSLRQSFGMVLQDTWLFSGTIRENIAYGNQDATDEEIKKAAI + SANAHSFIKRLPKGYETELTEGGSNLSQGQRQLLTIARVMLVIPPMLILDEATSSVDT + RTELNIQKAFLKMMEGRTSFVIAHRLSTIREADVILVMNNGTVVEQGSHEDLLKKNGF + YKKLYLSQYESFEQDL" + gene 678045..678833 + /locus_tag="Ccel_0585" + CDS 678045..678833 + /locus_tag="Ccel_0585" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fma:FMG_1340 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL74966.1" + /translation="MNKLVEEYTLQRKLLAEALVEKDYMELYEAEAIKNEFVAKLGEP + RYELSKLELSIARTKLKLEMIETCERFKIPVDHSHIDRELEKEFQKHYEMLRNMRLEI + EYAHTIDDEFEKTRRSRALEMKQIYLDIASYIHPELTENQDKNLNRVWKLVEEACQQG + NIEKLKRLRKKVINDYGNITENNEDLEEQLTLIKKRKLAVQDEIKAMKNRFPFSESDM + LDDEVAVMKFRDSMDMDIKNAKEILDKLEKQILEKLPPMGRYKN" + gene complement(679000..680046) + /locus_tag="Ccel_0586" + CDS complement(679000..680046) + /locus_tag="Ccel_0586" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74967.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(680220..680423) + /locus_tag="Ccel_0587" + CDS complement(680220..680423) + /locus_tag="Ccel_0587" + /inference="protein motif:PFAM:PF05979" + /note="PFAM: protein of unknown function DUF896; + KEGG: lmo:lmo1304 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF896" + /protein_id="ACL74968.1" + /db_xref="InterPro:IPR009242" + /translation="MEKSRIERLNELAKKAKSGSLTSSELAERDKLRKEYIEAFRANL + KATLDNTVIVDADGNRKSLRKDN" + gene 680587..681054 + /locus_tag="Ccel_0588" + CDS 680587..681054 + /locus_tag="Ccel_0588" + /inference="protein motif:PFAM:PF01584" + /note="PFAM: CheW domain protein; + KEGG: cth:Cthe_0878 CheW protein" + /codon_start=1 + /transl_table=11 + /product="CheW protein" + /protein_id="ACL74969.1" + /db_xref="InterPro:IPR002545" + /translation="MNDMQVVVFELNNELCSVETSIVFKIEKYGSISLVPQMPDYIKG + IYNLRGKVVPVVDLNKRFNLGESEITKKTKIIITEKNDQLYGFMVNNVTEIINLDEKS + IDRSEAVLKLNNKEYIKGIGKNDGKLFSIIDLNEILYNEEIKEVTTVLSENLK" + gene 681219..682265 + /locus_tag="Ccel_0589" + CDS 681219..682265 + /locus_tag="Ccel_0589" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL74970.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(682411..683508) + /locus_tag="Ccel_0590" + CDS complement(682411..683508) + /locus_tag="Ccel_0590" + /inference="protein motif:TFAM:TIGR00092" + /note="TIGRFAM: GTP-binding protein YchF; + PFAM: GTP-binding protein HSR1-related; Protein of unknown + function DUF933; + KEGG: cth:Cthe_0877 translation-associated GTPase" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein YchF" + /protein_id="ACL74971.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR004396" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR013029" + /translation="MKLGIVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGIVAV + PDERLDTLTKMYNPDKTTPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVV + RCFEDSNIVHVDGSIGPKRDIETINLELIFSDLEMIDRRIDRTKKLLKSGDKKFQIEM + ELYESIKAHLESGKPVRSMSFDQEQQQLVEQLFLITLKPVLYAANVSEEDLSSLDSNR + FLAELKEVAAEENSEVMVICAKIEEEIAQLEDEEKEDFLEAMGLEESGLDKLIKASYK + ILGLISYLTAGQQEVRAWTITNGTKAPQAAGKIHSDFERGFIRAEIVAYDDLINCGSY + TVAKEKGLVRSEGKEYVMHDGDVTLFRFNVS" + gene 683775..684176 + /locus_tag="Ccel_0591" + CDS 683775..684176 + /locus_tag="Ccel_0591" + /inference="protein motif:PFAM:PF05154" + /note="PFAM: TM2 domain containing protein; + KEGG: det:DET0230 TM2 domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="TM2 domain containing protein" + /protein_id="ACL74972.1" + /db_xref="InterPro:IPR007829" + /translation="MYCRNCGNVMNDQAVICVTCGVPIGKGNNFCPLCGETTDSMSHI + CMKCGFSLNNNYGQQKSKLAAGLFGIFLGMFGVHRFYLGFIGIGLAQLLLTVLSCFVF + SPIIWIWGLIEGILILAGSINRDAKGVALKD" + gene complement(684245..684835) + /locus_tag="Ccel_0592" + CDS complement(684245..684835) + /locus_tag="Ccel_0592" + /inference="protein motif:PFAM:PF00376" + /note="PFAM: regulatory protein MerR; + KEGG: cth:Cthe_0804 MerR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MerR family" + /protein_id="ACL74973.1" + /db_xref="InterPro:IPR000551" + /translation="MDVLKEKYSITELSTTLNVTDHALRFYEKEFGLNIPKDNRGRRY + YTTELANVMYQIKAMRDQGLELKAIRKILQEENIIKPKDISIPIPTEQLPAVVSKRIE + ELSSAELSMILETLNGIKEQLFNNVAAEFISTREHISKEIHSSKLELGACVENSSRKM + EIKMDKHFQEVDRYITSWRERKNTSLAGKLKKLIGK" + gene complement(684929..685828) + /locus_tag="Ccel_0593" + CDS complement(684929..685828) + /locus_tag="Ccel_0593" + /inference="protein motif:TFAM:TIGR00005" + /note="TIGRFAM: pseudouridine synthase, RluA family; + PFAM: pseudouridine synthase; + KEGG: cth:Cthe_0803 RluA family pseudouridine synthase" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase, RluA family" + /protein_id="ACL74974.1" + /db_xref="InterPro:IPR006145" + /db_xref="InterPro:IPR006225" + /translation="MILERIISENEARKTLKHVLKNGLKLSERLIRKLKLQQKIYVNE + HPERVNYIVKADDRLKVILDLEEECEHIEPQDIPLDVIYEDECMLVLNKQSGIVVHPT + SYHPDNTIANGIVYYLKQKGVTKKVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNN + LFKKEYLGIVQGIPQNNEGTINLPIARKPGSIMLRHISEEGAPSITHYKILKTFPSHN + SALLSFKLETGRTHQIRVHCKAMGFPIYGDTLYSDNTNLFISRQALHSYRTEIIHPVT + LKGVIFKAELPSDISGLLEILSK" + gene 685999..687285 + /locus_tag="Ccel_0594" + CDS 685999..687285 + /locus_tag="Ccel_0594" + /inference="protein motif:PFAM:PF06838" + /note="PFAM: Cys/Met metabolism + pyridoxal-phosphate-dependent protein; Aluminium + resistance family protein; + KEGG: cth:Cthe_0794 aluminium resistance protein" + /codon_start=1 + /transl_table=11 + /product="Aluminium resistance family protein" + /protein_id="ACL74975.1" + /db_xref="InterPro:IPR000277" + /db_xref="InterPro:IPR009651" + /translation="MDLQTREFLKHQFEIDDRIIELAEQAEKDAQKVFKRIDEIKQLN + QLKVIKAMQENKLSDSHFNGTTGYGYDDRGREVLDSVYADIFQTEDALVRHQIVSGTQ + ALALCLFGNLRPGDELVAVTGKPYDTLEEVIGIRGENCGSLKEFGVTYKQVDLKNGKP + DLEKIKETVSGKTKMAMIQRSRGYSWRDALSIQDIKNVIEAVKEVDGNIIIMVDNCYG + EFVETLEPTQVGADIIAGSLIKNPGGGLALTGGYIAGKKNLVEQAAYRLTSPGLGKEV + GASLGNNRLMFQGLFMAPHVVMESLKGAVFCAALMERAGFETLPSVEAHRSDIIQSVK + FNNKESLIAFCQGIQKGSPVDSYVTPQPWEMPGYDSPVIMAAGAFVQGSSIELSADAP + VKEPYVAYMQGGLVYEHVKLGNIIALQKLFQQGIVK" + gene 687337..688590 + /locus_tag="Ccel_0595" + CDS 687337..688590 + /locus_tag="Ccel_0595" + /inference="similar to AA sequence:KEGG:Cthe_0793" + /note="KEGG: cth:Cthe_0793 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL74976.1" + /translation="MRNVFKIKGIKIGTLIMGIFLLIYLPSLLYITFGNTIEKDLLKN + GKIEVVQNVDGILIRNEKVIKSPDDGNCVMDAVEGEKVPAFYRIATIVKNVPVSTYEE + LKKKEMQISSAEKAQKENLGVFSGDIIKLDSEIIEKVKNLGQQSVRGSLVESYDTMSD + IDSVVYRKSDIFGDNSKSAQYINKLISEKAEIESRLNNNVKEIKTGTAGLISFAIDGY + ESLLNPGFIKKATPKDLENITVKNTNRDFNVIDVKKGEPIAKLVRDLNNYMVAVVDQK + TGRDLTVDKQVTLRINDIGYSMDAVIDYSSNAIDGKRIISFKYNTGLDETIGMRRINV + DVVLSSHSGLKVPRSCLQNINISNQTAKICLLKGNIATYKEVKIVGMNDDAAIIDNPD + GESSIALYNTYILNPKNIQEGQIID" + gene 688583..689290 + /locus_tag="Ccel_0596" + CDS 688583..689290 + /locus_tag="Ccel_0596" + /inference="protein motif:PFAM:PF01168" + /note="PFAM: alanine racemase domain protein; + KEGG: cth:Cthe_0792 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="alanine racemase domain protein" + /protein_id="ACL74977.1" + /db_xref="InterPro:IPR001608" + /db_xref="InterPro:IPR011078" + /translation="MIDETIKQNLDDIYSRIKIAAEKSGRKAQDIKLIAVTKTVEVGR + IKNVCEYGIHDFGENRVQELLEKYDKFDESIQWHLIGHLQKNKVKYIIDKVHMIHSVD + SFELAKEIDNRAGKAGKRMNILLQVNVSGEETKFGIKPDEVNEYVGFISQLKNISLRG + MMTIAPFAGNPQEIRPIFKKLYDIYIDIKNKRIDNVNMDYLSMGMSNDFEVAIEEGSN + IVRIGTGIFGKRNYPQK" + gene 689346..689816 + /locus_tag="Ccel_0597" + CDS 689346..689816 + /locus_tag="Ccel_0597" + /inference="protein motif:PFAM:PF04472" + /note="PFAM: protein of unknown function DUF552; + KEGG: cth:Cthe_0791 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF552" + /protein_id="ACL74978.1" + /db_xref="InterPro:IPR007561" + /translation="MSKLLNKVFNFVGWEAVDEDEYEYDEQELNTKEEVKDEPIQTHF + FNGSKKQQSGKVVNIHTGNQFKMIVSQPNTFDDAQDICDHLKNKKPVVINLEGIEKQD + AQRIIDFLSGSVYALDGSIQKVSCDIFVIAPNNVDVSGDLKDELRNKTVFPWAK" + gene 689848..690138 + /locus_tag="Ccel_0598" + CDS 689848..690138 + /locus_tag="Ccel_0598" + /inference="protein motif:PFAM:PF02325" + /note="PFAM: protein of unknown function YGGT; + KEGG: cth:Cthe_0790 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function YGGT" + /protein_id="ACL74979.1" + /db_xref="InterPro:IPR003425" + /translation="MYSVFRAINSVLFAFEMILVARAVLSWFPISRNNKFIDLLHAIT + EPVLSPIRNMLSRSSIFNNSMLSMMDFSPIVAFLLIEVIRNVVLSIFRIFIY" + gene 690145..690927 + /locus_tag="Ccel_0599" + CDS 690145..690927 + /locus_tag="Ccel_0599" + /inference="protein motif:PFAM:PF01479" + /note="PFAM: RNA-binding S4 domain protein; + KEGG: cth:Cthe_0789 RNA-binding S4" + /codon_start=1 + /transl_table=11 + /product="RNA-binding S4 domain protein" + /protein_id="ACL74980.1" + /db_xref="InterPro:IPR002942" + /translation="MDKNELLKMVSKLEDRVLVSRLLDKIEQCRYSSFAYSDFLSPYE + ASVSKKILDRVKEVFYKLTGGYDGAERVITVISNDFIEEDIPYSTPISLLRISPVTEN + KLSHRDYLGSLLGLGIKREKIGDILVSEKCTDVFVIDKIAEYISYNLDKIGNTKVHCE + LCDIYQFTPPQKKVRSINTTVASLRADSVASSGFGLSRTKVMDYFKAQKVNVNWELVQ + SPSKMLTEGDVISIRGMGRIVLEKVLGNTRKDRISIIIKRFE" + gene 690956..691420 + /locus_tag="Ccel_0600" + CDS 690956..691420 + /locus_tag="Ccel_0600" + /inference="protein motif:PFAM:PF05103" + /note="PFAM: DivIVA family protein; + KEGG: cth:Cthe_0788 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DivIVA family protein" + /protein_id="ACL74981.1" + /db_xref="InterPro:IPR007793" + /translation="MNYTPNDLDNIKFKKNFMGYNEDQVNEVLDSVIQDYELYIKENI + ELKDRISVLNEGIQHYKNIEESLQNTLIVAQQTGEEIKKNSYEKAENIIKEAELKAQR + VINDANQEVIKIRFEYEEMKKRLHLFKTKSETLLLSQLELLKQLFNTDNDEE" + gene 691566..694082 + /locus_tag="Ccel_0601" + CDS 691566..694082 + /locus_tag="Ccel_0601" + /inference="protein motif:PFAM:PF01580" + /note="PFAM: cell divisionFtsK/SpoIIIE; + KEGG: cth:Cthe_1095 cell divisionFtsK/SpoIIIE" + /codon_start=1 + /transl_table=11 + /product="cell divisionFtsK/SpoIIIE" + /protein_id="ACL74982.1" + /db_xref="InterPro:IPR002543" + /translation="MLFLQVKKVKKKKKYKRVESGFSKYKNEILGLILFAFGILAFFS + FIFTKSMGVFGKGITNVMLGFLGVAAYAVPVAFIVYGVAMIFKMDSRNFKCRFIYFGI + LLILLSAFFQVSVFDYEEYAGRNLFYSISKFYSDGKVLSGGGILGGLLSLPFLMTFQV + LGTVIILTTISIIDIILLTNVSMAAFLKNVSLYFSNKMKSAKENRKIKKQERIEAQEE + SVNDTELSDEKPDKKKKVINFRIERENRGKSAKKLEKDAENPEPEIENVETEEVPEEF + TVSLTGFNDAADELVISDIKDAGLCPDNNFIDVENQDVPAETTNTEGQISQPVQKMDT + ASESDPDELVIPQTEIQKPMIYNYPSTDLLDSNKDDLNVKALKNVALEGAKKLEDTLK + SFGVDARVINISRGPAVTRYEIQPSPGVKVSKIVNLSDDIALNLAAAGVRIEAPIPGK + AAVGIEVPNKDMSTVLLRDIIESREFANHSSKLAFSVGKDISGETVVADIAKMPHLLV + AGATGSGKSVCINSLIMSILFKASPEEVKLLMVDPKVVELGIYNGIPHLLIPVVTDPK + KAAGALNWAVQEMVNRYKVFADKGVRDLKGYNAMLKANNEQGILPHIVIIVDELADLM + MVAPNDVEDAICRLAQMARAAGMHLVIATQRPSVDVITGVIKANIPSRISFAVSSQVD + SRTILDMSGAEKLLGKGDMLFYPVGEPKPLRVKGSFVSDTEVERVVEFIKTQGYTSYD + EDIIEKINDQATGKDDNPGDNDELLNQAIEMVVEAGQASVSFVQRKFKVGYSRAARII + DQMEARNIVGRFEGSKPRQVLISKQQWMEMQMNQKDLQKD" + gene 694278..696038 + /locus_tag="Ccel_0602" + CDS 694278..696038 + /locus_tag="Ccel_0602" + /inference="protein motif:PFAM:PF07719" + /note="PFAM: TPR repeat-containing protein; + Tetratricopeptide TPR_2 repeat protein; + SMART: Tetratricopeptide domain protein; + KEGG: TPR Domain containing protein" + /codon_start=1 + /transl_table=11 + /product="Tetratricopeptide TPR_2 repeat protein" + /protein_id="ACL74983.1" + /db_xref="InterPro:IPR001440" + /db_xref="InterPro:IPR013026" + /db_xref="InterPro:IPR013105" + /translation="MFILTTFNACLMVLLLSYVFYRLLKNKEAVTLISFTIQLSALTI + VILSLVNHVNTSNIIELFYIVFGILIPSCFIIWDYRHTIKSSNNKERHQDYITIENKI + LQQQGNLSESSSISTADSCQKVMDILENEDSVDDIIAELILLKDDLFLGIKKKLIQAE + NRYSQGNFDFAYDIYKGMLDITQAPGNLFFNYGNVCFKKGMFREAISCYRKVLELSGS + ITKAYLVYINLGATYFNMQKTELALENFFKALEINPQCSKAKEGIGKVYTATGRQADA + VIYYEELLKNDDSNYELLLSLGKLLVELGNIDEAKERFERCIKNNPRQADAYILLGKL + FMSVGQYSEASKVFKTYITINGVDYTGHYNLAECYFENKEYKNAIAEYKQTISLNQKS + HESLFKLGLIYDKTDETEKAIDCYRAVIQLMPNFIDAYNNLGIVFAKSQRHVESLAAY + TAGIKLNPDNFRLYFNMGVVLFEIKRYEDSADAFARAVKLNPDDKDVYYYLGASLTEL + KQYDEAIKAYGRALDEKMEEGELYYNIAAVYALMKKQDIVLDNLKRAVSKNSGIKREI + TRNSVFDYMRTNSDFVELVS" + gene 696139..698190 + /locus_tag="Ccel_0603" + CDS 696139..698190 + /locus_tag="Ccel_0603" + /inference="protein motif:PFAM:PF08497" + /note="PFAM: Radical SAM domain protein; Radical SAM + domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cth:Cthe_1094 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL74984.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013704" + /translation="MSFLPISFEDMNEKGWEQLDFLYISGDAYVDHPSFGHAIISRVL + ESEGFKVGMIAQPNWKNSEDFKKLGRPKYGVLISSGVIDSMVNHYTTSKKKRSTDLYS + PGGKAGYRPDRAIIVYANKIKEIFKDTPVIIGGIEASLRRFAHYDYWDDKVRRSILVD + SKADLLVYGMGEKPITEIAKLLRKDVPAHSIKNLRGSAYLARYEELPAEVREAVDSNG + SKNVAVLPSFEAVQESKKVYAEAFRIQYNEQDAISGRILVQPHGDRYLVQNPPILPLS + TAELDRVYALPYERTYHPVYEKYGGIPAIKEVEFSVTSHRGCYGGCSFCALNFHQGRV + IQKRSQASIINEAKKLTWTQGFKGYIHDVGGPTANFRNVACEKQKKSGVCKERQCLHP + EPCKNLIVDHSEYLELLRKLRTLPDVKKVFIRSGIRYDYLMLDKNDDFFSELCEHHVS + GQLKVAPEHVVDRVLKMMGKPKRQLYDRFVKKFYEINEKIHKEQYLVPYMISSHPGSD + LNAAVELAEYLKQQGYMPEQVQDFYPTPGTLSTCMFYTGYDARTMKKVYVPKTPKEKA + MQRALLQYRKKENYHLVVEALKEAHREDLIGFGPNCLVKPLRGRSYNNASNMAKPARE + GNKEKNPRGGNKRNTDRVEKTKQTRQENSSKNRKQSSKTAYTNAKSKSSGVKNLTRKK + R" + gene 698254..699108 + /locus_tag="Ccel_0604" + CDS 698254..699108 + /locus_tag="Ccel_0604" + /inference="protein motif:PFAM:PF00763" + /note="PFAM: tetrahydrofolate + dehydrogenase/cyclohydrolase; + KEGG: cth:Cthe_1093 methenyltetrahydrofolate + cyclohydrolase" + /codon_start=1 + /transl_table=11 + /product="tetrahydrofolate dehydrogenase/cyclohydrolase" + /protein_id="ACL74985.1" + /db_xref="InterPro:IPR000672" + /translation="MSAKVLNGTELAAKVKAGLKAKIDELKSKGINPGLAVIIVGDDP + ASRVYVNHKKNDCTEIGIKSFEYALPESTSEEELLDLIETLNNDASVNGILVQLPIPK + HINEEKVIAAISPDKDADCFHPMNVGKLMIGKPEFLPCTPAGVVELLEENGIEISGKN + CVVVGRSNIVGKPQAILLLAKNATVTICHSKTANIEEVCRSADVLVVAIGKSEFIKPE + FVKPGAVVIDVGVSRGADGKLVGDVQFAEVAEIASAITKVTGGVGPMTRAMLMKNTYK + AVLLQNGL" + gene 699556..701124 + /locus_tag="Ccel_0605" + CDS 699556..701124 + /locus_tag="Ccel_0605" + /inference="protein motif:TFAM:TIGR03319" + /note="KEGG: cth:Cthe_1091 metal dependent + phosphohydrolase; + TIGRFAM: metal dependent phophohydrolase; YmdA/YtgF + protein; + PFAM: KH type 1 domain protein; metal-dependent + phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region; KH + domain protein" + /codon_start=1 + /transl_table=11 + /product="RNA binding metal dependent phosphohydrolase" + /protein_id="ACL74986.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR004087" + /db_xref="InterPro:IPR004088" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /db_xref="InterPro:IPR017705" + /translation="MCKIIVNILIGLACGLIIAVIASKIFYDRGFEARKKQAEAQIGS + AEQEAQRIVGEALKQGENKKREALLEAKEEIHKSRVELDRDIKDRRNEFMRQERRLVQ + KEETLDKKVEALEQKDEALNKKLKDIEVLQEQSGELVKKQTEELERIAGLSVEDAKEY + LLRNIENEVKHDAAALIKEIEANAKQEADRKAKDILATAIQKCAADHVSEATVSVVPL + PNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREVARLTLEKLI + LDGRIHPARIEEMVEKAKKEVDNTIRQEGDNAAFETGVHGLHPELVRLLGKLKFRTSY + GQNVLNHSIEVSHLAGIMAAELGVDVLLAKRAGLLHDIGKAIDHEVEGSHVTIGADVA + KKYKESTDVVNAILSHHGDVEATNVVSVLVQAADSISAARPGARRETLESYIKRLEKL + EEIANSFEGVEKCFAIQAGREIRIMVKPDVVNDTDIVLKAREIVKKIEDELEYPGQIK + VTLLRETRAIEYAK" + gene 701307..702101 + /locus_tag="Ccel_0606" + CDS 701307..702101 + /locus_tag="Ccel_0606" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: cth:Cthe_1090 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL74987.1" + /db_xref="InterPro:IPR004843" + /db_xref="InterPro:IPR005235" + /translation="MKILFIGDIFGNPGRKAVKEFVPQLKKDLGIDFCIANGENAAAG + SGITYLIAQELYKSGVDCITLGNHTWSKKEILNFIDSDQNIVRPANLPGDIPGRGYTI + LKANGKELAVLNLMGRVYMDSIDCPFQVADRELQEIKSKTKAVFVDMHAEATSEKCAL + AWYLDGRICCLVGTHTHVQTADERILPCGTGLISDVGMTGPYDGVIGVDKELIIERFI + TRMPQKFEVAKGRVQFCAVHLEVDEKTGKCITIERIFKVADSLEGK" + gene 702113..702940 + /locus_tag="Ccel_0607" + CDS 702113..702940 + /locus_tag="Ccel_0607" + /inference="protein motif:PFAM:PF02578" + /note="PFAM: protein of unknown function DUF152; + KEGG: cth:Cthe_0911 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF152" + /protein_id="ACL74988.1" + /db_xref="InterPro:IPR003730" + /translation="MIESNDKITLKQKNDLLYIQFQNLKEYEDILTHCFTTRLGGVSQ + GAFFSLNLSFSRDDIRENVLENYRRLADAIGVEYNKMVLSNQIHDNKIRIVSAADAGK + GLVMESDIVGFDGLSTNQPGIPLVTFYADCVPVLFLDPVKKAITAVHSGWRSTVKNIS + YEALVLMKNTYNSNYNDIQVAIGPSICMNCFEVGKEVYDSFKEKFSWCDTYTEYRDGK + YYMSLQKIIKHVLTDAGVPGENIMVSDVCTKCNTDLFFSFRGDKGKTGSLAAVMMLK" + gene 702983..704632 + /locus_tag="Ccel_0608" + CDS 702983..704632 + /locus_tag="Ccel_0608" + /inference="protein motif:PFAM:PF00496" + /note="PFAM: extracellular solute-binding protein family + 5; + KEGG: cth:Cthe_0910 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 5" + /protein_id="ACL74989.1" + /db_xref="InterPro:IPR000914" + /translation="MMTKALRLISLFIITGLMLSACSVNLNKKSANQDEDIYEGKYDI + LDKGPEKGGSIRLFSTPVDTLNPILTNNQYVQDFLGFVFEGLYRLDEKQQPVPVLAER + AVTSADGLKLTVTLKKGIKWHNGLPLQAGDVVFTINSIMDTKNSSVYAANLQNIASVT + AGNNNSVVITLKKPDSMLLYSLTFPVISMQYFNKEKLSDKNSKKNLSPVGTGPYTFVS + YNAKNGVKFKANDDWWNKGNSEVTTPYIQSLEIKIFENAGKATKVFQSRDVDVVTVDH + SEFKKYINRTDISLKRYPGKNYEFLSLNVTKGPMANKNLRSALGGFIDKKKLIDTAVQ + GIAIPAELPLFPNSWINQLVNMEQYSDLKKAKQLMTQSGYVLSKNKYVSKANSRALSL + KLIVNQDNTLRVNTADAIASQLVKNGINVEVEKLTWENVQKRIKSGAYDMALLGYQIS + TKPDLSFAYSTDSIESGLNTAKYSNPAVDGYLQQILTQSDIEKQKSLYTKLLNTVLDE + RPYIGLYFISQGIMCSKNIKGAINPNVWNSYNDISQWYVPQ" + gene 704660..705151 + /locus_tag="Ccel_0609" + CDS 704660..705151 + /locus_tag="Ccel_0609" + /inference="protein motif:TFAM:TIGR00077" + /note="TIGRFAM: lipoprotein signal peptidase; + PFAM: peptidase A8 signal peptidase II; + KEGG: cth:Cthe_0909 signal peptidase II" + /codon_start=1 + /transl_table=11 + /product="lipoprotein signal peptidase" + /protein_id="ACL74990.1" + /db_xref="InterPro:IPR001872" + /translation="MLWALIIILGFAMDRLSKVWVLDKIAGNPVTVIKDFFYLRHLEN + DGAAFSILQGKTVFLILMVSVVSLAMLYYLIKEKNKFLRLSLSLILGGALGNLYDRIF + SNGKVVDFLEFHFGSYVFPTFNVADILVVVGTILLAIYILFLYKEEKPEPVQQEQVKD + EAK" + gene 705182..706096 + /locus_tag="Ccel_0610" + CDS 705182..706096 + /locus_tag="Ccel_0610" + /inference="protein motif:TFAM:TIGR00005" + /note="TIGRFAM: pseudouridine synthase, RluA family; + PFAM: RNA-binding S4 domain protein; pseudouridine + synthase; + KEGG: cth:Cthe_0908 ribosomal large subunit pseudouridine + synthase D" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase, RluA family" + /protein_id="ACL74991.1" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR006145" + /db_xref="InterPro:IPR006224" + /db_xref="InterPro:IPR006225" + /translation="MKEFILNCDTDGVRIDSWLAGNLEDYSRSYIQKLCLDGNVWANG + IQVKSNYRVKTDDNIKVNVPEAEILDVEPEDIPLDIVYEDKHIIVINKPKGMVVHPAV + GNYTGTLVNALMKHCGDSLSDINGVIRPGIVHRIDKDTSGLLVVAKSNIAHERLSEKL + KTHDIKREYIALVDGIIYENSGKIDAPIGRNPVERKKMCVNTENGRNAITHFKVLERF + QNATYLELKLETGRTHQIRVHMAYINHPIIGDMVYGRRKQKYKTKGQVLHAWRLSFQH + PITGEEVKFETAVPEYFQRILSQLRENL" + gene 706340..706876 + /locus_tag="Ccel_0611" + CDS 706340..706876 + /locus_tag="Ccel_0611" + /inference="protein motif:PFAM:PF00156" + /note="PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_0954 uracil phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosyltransferase" + /protein_id="ACL74992.1" + /db_xref="InterPro:IPR000836" + /translation="MGHTEIMDQNAIARAITRISHEIIEKNKGVENLVLIGIQRRGVP + LAGRIAEKIKDVEGREIPVGILDITLYRDDLSLLNEHPVINGTEINFDIAGKKLVLVD + DVIYTGRTVRAAIDALMDINRPKMIQLAVLIDRGHRELPIRADYVGKNVPTSRSEIVH + VNVFEIDGLNNVTIADKE" + gene 706888..707829 + /locus_tag="Ccel_0612" + CDS 706888..707829 + /locus_tag="Ccel_0612" + /inference="protein motif:TFAM:TIGR00670" + /note="TIGRFAM: aspartate carbamoyltransferase; + PFAM: aspartate/ornithine carbamoyltransferase + Asp/Orn-binding region; aspartate/ornithine + carbamoyltransferase carbamoyl-P binding domain; + KEGG: cth:Cthe_0953 aspartate carbamoyltransferase + catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="aspartate carbamoyltransferase" + /protein_id="ACL74993.1" + /db_xref="InterPro:IPR002082" + /db_xref="InterPro:IPR006130" + /db_xref="InterPro:IPR006131" + /db_xref="InterPro:IPR006132" + /translation="MNLKSKDLLGLRDISAEEIEYILNTAKTMKCIVTSNNKKTAHLQ + GKSIITLFYENSTRTRLSFELASKYMGASAANISASSSSVQKGETLIDTGKTIDSMGS + DIIIMRHPMSGAPHLLAKNVKSSVINAGDGMNEHPTQALLDMFTILEKKGTLKGLKVA + IIGDILHSRVARSNIWGLTKMGAEVNVAGPATLIPPEIEKIGVNVFSTVQEAMLDADV + VMGLRIQLERQKKGLFPTIREYSRFFGVDDKRLKLAKEDAIVLHPGPVNRGVELSSSV + TDGEQSFIDEQVTNGVAVRMALLYLLTRRGIVNEVTD" + gene 707813..709099 + /locus_tag="Ccel_0613" + CDS 707813..709099 + /locus_tag="Ccel_0613" + /inference="protein motif:TFAM:TIGR00857" + /note="TIGRFAM: dihydroorotase, multifunctional complex + type; + PFAM: amidohydrolase; Amidohydrolase 3; + KEGG: cth:Cthe_0952 dihydroorotase" + /codon_start=1 + /transl_table=11 + /product="dihydroorotase, multifunctional complex type" + /protein_id="ACL74994.1" + /db_xref="InterPro:IPR002195" + /db_xref="InterPro:IPR004722" + /db_xref="InterPro:IPR006680" + /db_xref="InterPro:IPR013108" + /translation="MKLLIKNGHVLDVKTGLDRVTDILAVDGIIHEVGSKIDEAGCEV + IDATGLYVTPGLVDAHCHLRDPGYEYKEDIESGTRSAAKGGFTSVACMPNTNPVLDNE + AMVKYVINKAKTDGFLNVFPIGALSKGLKGEELSEIGELKFAGAVALSDDGRPVGNSS + LMKKAMQYASMFDITIISHCEDLDLVDEGLMNEGYQSSILGLKGNPAPAEEVMIARDL + ILAEYTKATIHIAHVSTELGVDLIRNAKRRGVKVTAETCPHYFTLTDNACEGFNTNAK + VNPPLRTQKDVDAIIQGLKDGTIDIISTDHAPHHIDEKNVEFKIAANGMVGFETAFPL + AVTYLVKPGHLSLKELVYKMSFNPSQMLGLNKGTIEVGKLADLIIFDLNEEYKVNITE + FESKSKNSPFNGLLLYGQPQYTIVGGTPVVRKKVLL" + gene 709167..710105 + /locus_tag="Ccel_0614" + CDS 709167..710105 + /locus_tag="Ccel_0614" + /inference="protein motif:TFAM:TIGR02127" + /note="TIGRFAM: orotidine 5'-phosphate decarboxylase; + PFAM: Orotidine 5'-phosphate decarboxylase; + KEGG: cth:Cthe_0951 orotidine 5'-phosphate decarboxylase" + /codon_start=1 + /transl_table=11 + /product="orotidine 5'-phosphate decarboxylase" + /protein_id="ACL74995.1" + /db_xref="InterPro:IPR001754" + /db_xref="InterPro:IPR011995" + /translation="MFIDRLIESIQEKNNPTVVGLDPKIEYVPTFIKEKAFKEYGKNL + KGASEAILNFNKMIIDSIYDQVPAVKPQLAYYEMYGIDGLIAFQETCKYAKSKGLIVI + ADGKRNDIGTTAEAYSKSFLGETEIDDGVKQKVFDVDALTVSPYLGIDGVKPFIQDCI + NYDKGIFVLVKTSNKSSGQLQDIVTQQCKSIYEVMGGYVQEWGKPLMGKYGYSSVGGV + VGATYPNQAKLLRSIMKNAYFLVPAYGAQGGTARDCANSFNRDGLGAIVSASRSVICA + YKSDTWKNEYTEEKFAEASRAEVLRMKEDLNTALGR" + gene 710139..711221 + /locus_tag="Ccel_0615" + CDS 710139..711221 + /locus_tag="Ccel_0615" + /inference="protein motif:TFAM:TIGR01368" + /note="TIGRFAM: carbamoyl-phosphate synthase, small + subunit; + PFAM: glutamine amidotransferase class-I; + Carbamoyl-phosphate synthase small chain; + KEGG: cth:Cthe_0950 carbamoyl-phosphate synthase small + subunit" + /codon_start=1 + /transl_table=11 + /product="carbamoyl-phosphate synthase, small subunit" + /protein_id="ACL74996.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR001317" + /db_xref="InterPro:IPR002474" + /db_xref="InterPro:IPR006220" + /db_xref="InterPro:IPR006274" + /db_xref="InterPro:IPR011702" + /translation="MKAFLLLEDGTIFEGNSFGMEGKVVGEVVFNTGMTGYQEVLTDP + SYCGQIVCMTYPLIGNYGVNIEDIESLKPQVKGFIVRELCKTPSNWRSIETLNEYLKR + NEITGLEGIDTRALTRILRDNGTMKGTIITAEQLENIQEELTNVNSYTVSNPVLQVTT + REIKHYEGEGYKIALLDYGLKQNIVRSLLNRGCEVYVFPATATADEVLGVDPDGIMLS + NGPGSPRECQFQIDTIKKLIGKKPIFGICLGHQLAALANGANAIKLKYGHRGCNHPVK + DIEKDLTYITSQNHGYTIVEESLNKETMTVSHKNMNDGTIEGIKYKNAPLFTVQFHPE + ASPGPEDTAYLFDEFIKMIDYSKNIL" + gene 711245..714460 + /locus_tag="Ccel_0616" + CDS 711245..714460 + /locus_tag="Ccel_0616" + /inference="protein motif:TFAM:TIGR01369" + /note="TIGRFAM: carbamoyl-phosphate synthase, large + subunit; + PFAM: phosphoribosylglycinamide synthetase; ATP-dependent + carboxylate-amine ligase domain protein ATP-grasp; protein + of unknown function DUF201; Carbamoyl-phosphate synthase L + chain ATP-binding; Carbamoyl-phosphate synthetase large + chain oligomerisation; Carbamoyl-phosphate synthetase + large chain domain protein; MGS domain protein; RimK + domain protein ATP-grasp; + KEGG: cth:Cthe_0949 carbamoyl phosphate synthase large + subunit" + /codon_start=1 + /transl_table=11 + /product="carbamoyl-phosphate synthase, large subunit" + /protein_id="ACL74997.1" + /db_xref="InterPro:IPR000115" + /db_xref="InterPro:IPR003135" + /db_xref="InterPro:IPR003806" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR005480" + /db_xref="InterPro:IPR005481" + /db_xref="InterPro:IPR005483" + /db_xref="InterPro:IPR006275" + /db_xref="InterPro:IPR011607" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR013651" + /translation="MPKRNDIHKVLVIGSGPIIIGQAAEFDYAGTQACQALKEEGIEV + VLVNSNPATIMTDTNIADKVYIEPLKAEVVKNIIRCEKPDSILPTLGGQTGLNLAMEL + AESGFLQEQGVKLLGTATEAIKMAEDRQDFKDTMERIGEPCIASKVVTTIEDAIAFAR + EIDYPVIVRPAYTLGGTGGGIVNNEEELREVGENGLRLSRVHQVLIEKCISGWKEIEY + EVIRDGKGNVITVCNMENIDPVGVHTGDSIVVAPSQTLADKEYQMLRTSALKIISALG + IQGGCNVQYALHPTSFEYAVIEVNPRVSRSSALASKATGYPIAKVASKIAIGYGLDEI + KNAVTGKTYACFEPTLDYVVVKIPKWPFDKFVKAKRTLGTQMKATGEVMSISSSFEAA + LMKAIRSLELGIFTLEQDIYKNLEGSEIVQKLHDINDERIFVIAEAIRRSITVEDIHE + ITKIDYFFLCKIKELVIMEEKLKNVSKDQLNKDVLKKAKKMGFTDTIIAKLSGIPQKE + ITELRKQKNIIAAYKMVDTCAAEFEAVTPYYYSTYDDFSEVKESQKEKVLVLGSGPIR + IGQGIEFDYCSVHSVWALKELGYETIIANNNPETVSTDFDTADRLYFEPLTAEDVANI + VEAEKPKGAIVQFGGQTAIKLTKALDDMGVKIFGTEAKNVDAAEDREKFDEILEKTDI + PRPQGKTIFTLDEAIAAANELGYPVLVRPSYVLGGQGMEIAYNDKDVKEFMEIINRTV + QEHPILIDKYMMGKEIEVDAICDGEEILIPGIMEHLERAGVHSGDSISVYPTQTLSDK + VKEVVVDYTIKLAKALNVIGMVNIQYVLYNNQVYVIEVNPRSSRTVPYISKVTGIPMV + NLATKVMMGKKLKDFKYGTGLYREPGYVSVKVPVFSFEKLDEVDTSLGPEMKSTGEVL + GIADNLPEALYKGIIASGIKLPKSGDGILMTVRDTDKPELIHIAEEFEKLGFTLYATG + KTANMLNNNGIATNAVRKLDEGSPNIIELIHAGKLSMIINTPTKGRNSDRDGFKIRRK + AVEMSIPCLTSLDTAEAIIKCLKLGKTEGELEVLNLSIFDE" + gene 714477..715253 + /locus_tag="Ccel_0617" + CDS 714477..715253 + /locus_tag="Ccel_0617" + /inference="protein motif:PFAM:PF00175" + /note="PFAM: oxidoreductase FAD/NAD(P)-binding domain + protein; + KEGG: cth:Cthe_0948 dihydroorotate oxidase B, electron + transfer subunit" + /codon_start=1 + /transl_table=11 + /product="oxidoreductase FAD/NAD(P)-binding domain + protein" + /protein_id="ACL74998.1" + /db_xref="InterPro:IPR001433" + /translation="MGKILKEQIVSTQMLCKDVFKMTIKSEYVASNAKPGQFANIRCG + GLDAMLRRPISICDVNKSQDTFDIVIQVKGSGTEKLCSMCQGDVDIMAPLGNPFTIGD + KYKNICVVGGGIGTFPLLYLLKSSQSIHKTALLGFRNKEAVVLEDKFKAAADTVEIAT + DDGSYGKKAFVTELLEEKIMSQKPDIIYTCGPTIMMQKVATIAEKNGIPCQVSLEQRM + GCGIGACLVCACKTKKSDDWGFGHVCKDGPVFWSTDIYWD" + gene 715272..716195 + /locus_tag="Ccel_0618" + CDS 715272..716195 + /locus_tag="Ccel_0618" + /inference="protein motif:TFAM:TIGR01037" + /note="TIGRFAM: dihydroorotate dehydrogenase family + protein; + PFAM: dihydroorotate dehydrogenase; + KEGG: cth:Cthe_0947 dihydroorotate oxidase B, catalytic + subunit" + /codon_start=1 + /transl_table=11 + /product="dihydroorotate dehydrogenase family protein" + /protein_id="ACL74999.1" + /db_xref="InterPro:IPR001295" + /db_xref="InterPro:IPR005720" + /translation="MSNRIDLSVDIAGIRFNNPVIMASGTYGFGKEYSEYVDLNQIGG + ISVKGLTLKERKGNKPPRIAETPAGILNSVGLQNPGVESFIKDDLPFLKNHKTKIIAN + IAGNTIEEYCEMAEILASSGVDAIEMNVSCPNVKAGCLAFGTTPKGIEEITSAVKKYC + KQPLIVKLTPNVSDIRSIAVAAEGAGADCISLINTILGLAIDINKKKPILANNFGGLS + GPAVKPIALRMVYEAAHSVKIPVIGMGGISSWEDAIEFILAGASAIMVGTANFVNPIV + PIEIISGIEKYLQSNGHTNVNEIVGKLELND" + gene 716250..716936 + /locus_tag="Ccel_0619" + CDS 716250..716936 + /locus_tag="Ccel_0619" + /inference="protein motif:PFAM:PF00300" + /note="PFAM: Phosphoglycerate mutase; + KEGG: cth:Cthe_0946 phosphoglycerate mutase" + /codon_start=1 + /transl_table=11 + /product="Phosphoglycerate mutase" + /protein_id="ACL75000.1" + /db_xref="InterPro:IPR013078" + /translation="MKTRLIFVRHAEAEGNFNRVFHGWYDSRVTEKGHKQAKAVAERL + ADLPIDIIYSSSLTRTLQTAQYIADVKKLPIIRTDKMKEINGGDWEDVAWEVLPQKYP + NENYTWENEPHMHQMPNGENMEEFYNRLMKEVMNIINQNKGKSICIVTHGTAIRAMLC + RFYGKSLKYMKNVLWHDNTSVTIVDYNDENDEFQVVLEGGIEHLGEELSTIQNQEWWQ + NYMESRQKNN" + gene 716954..717811 + /locus_tag="Ccel_0620" + CDS 716954..717811 + /locus_tag="Ccel_0620" + /inference="similar to AA sequence:KEGG:Cthe_0784" + /note="KEGG: cth:Cthe_0784 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75001.1" + /translation="MEKSNLINWLFKTNAVRICPENKPFWYTSSKIGPYYINTHFLYG + SEEKANSLLKVIDVCKENKMDCSEIILELARKNFETDEIYRGLITMMCEYIKSNINIK + NVGYISGGERRDWFFSLIIADILKIPHITIFKDLTAVLYKDGISSDVADLRGANVLHI + ADIITEASSYVRAWIPAVNKLNGNLKYSLVVIDRLQGGTEKLKDASVESHALMNVDKG + LFDGALTGGHISSEQYALLMKYLDNPTGTMKEFLINHPEFLENSLNADPRTAERARIC + IEQDIYGLK" + gene 717886..718578 + /locus_tag="Ccel_0621" + CDS 717886..718578 + /locus_tag="Ccel_0621" + /inference="protein motif:PFAM:PF06940" + /note="PFAM: protein of unknown function DUF1287; + KEGG: chy:CHY_2180 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1287" + /protein_id="ACL75002.1" + /db_xref="InterPro:IPR009706" + /translation="MKRFVFVASIVLAVGFVAILCYSHFAFQDAFFFLRGEVKIEKIV + CQGDMDGDGIPDNDDIVRGARMEIANRTKYQSTYYEGGYPPKSEGVCTDVVWRALKNA + GYDLKAHMDADISRNTSDYKSGVIIPDQNIDFRRVKNQYVFFKRYATNLTTEVKPFDR + KNLYEWQPGDIVILKNSDHVAIISDKRRRDGVPAIIHNSSTFPMEENLLVKWSKNGRI + IGHFRFPQNDLE" + gene 718600..719076 + /locus_tag="Ccel_0622" + CDS 718600..719076 + /locus_tag="Ccel_0622" + /inference="protein motif:TFAM:TIGR00011" + /note="TIGRFAM: ybaK/ebsC protein; + PFAM: YbaK/prolyl-tRNA synthetase associated region; + KEGG: amt:Amet_3503 YbaK/EbsC protein" + /codon_start=1 + /transl_table=11 + /product="ybaK/ebsC protein" + /protein_id="ACL75003.1" + /db_xref="InterPro:IPR004369" + /db_xref="InterPro:IPR007214" + /translation="MATQKTNVMRILDSAKINYNMYTYDSKGGAIDGVSVAEKIGQPV + ERVYKTLVTRGNSKNFFVFVIPVSKELNLKAAAKAVGEKSIEMIRVDEINKVTGYIRG + GCSPIGMKKDFKTVIDSTCKNLATIIFSGGKIGFQVEVNPKELVNFIKAGVENITE" + gene 719243..721087 + /locus_tag="Ccel_0623" + CDS 719243..721087 + /locus_tag="Ccel_0623" + /inference="similar to AA sequence:KEGG:Gura_0797" + /note="KEGG: gur:Gura_0797 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75004.1" + /translation="MKKHLVILLVMCMLFTSCFPMLVIQAEGLEDLPAPQDRYLWSIA + ANDNGLFVAVGDYGIVRLTENGMDWKDIQLPTDSQLNSVASRGIQFVAVGDFGAIYTS + EEGYDWKEVMPPKFDYNLTSVVSNGKIFVASGSDGAILYSEDGYNWVKVEKAYTSYKE + TIPNITSLLWNGSVFYALTDVGTSLISENGIDWKEQEIYTAVETKYGFSLKDVTWGND + MFVATGEKGKIHVSYDGVYWKPVFQDEKASFRNVVWSESENGFFATGTRGLISFSKDG + FGWDRISKENLSHYAVEHMATFRDISIAIGGGGLITRITYLNHTVEVINAGADDGYQL + YDVTSGERTLVAVGTDGRIRRSTDGGLTWSYFNLTTIDDLVDIDYGEGAYVAVGPGGT + IIRSTDGGKNWYAPITGLGNDIEGVTYSRGKFIAVGSNGLILTSGNAGATWNDNVVSP + PVKLNKGEYNGSTYVVVGNNGKIFTSIDGVNWTEQRSGTNKNLKSVVWDGRKFIAVGD + NGTIITSPDGITWSTSVSGFQTNFTDITVYGLDTWNPGGYRIIATGLSGKTYGSNDGI + KWFPVASQVSTNLNGTVWCNGKYVSVGCHECITVSNDGINWTQVLGHY" + gene complement(721132..722151) + /locus_tag="Ccel_0624" + CDS complement(721132..722151) + /locus_tag="Ccel_0624" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cbe:Cbei_4361 radical SAM domain protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75005.1" + /db_xref="InterPro:IPR007197" + /translation="MFKPQRVIFETGALDYELGRSLHDHFRSLGIEINQCAINRVKSY + IPGEDARSHYSHAKQTLVVGVKKSLTFQSCKPSAHYQLPLVSGCIGQCEYCYLNTQLG + DKPFIRVYVNIDDILNKADKYIKERLPENTIFEGAATSDPVPVEPYTGALEASINFFA + KQNNARFRFVTKFTDIDSLLDLDHNKHTEIRFSVNTQSIISVYEHRTASADKRIEAVG + KASKSGYPVGFLIAPVFLYEDWKQDYKDLLLKLRNTVDVNTTNNTSFEIITHRYTEKA + KNRILEIFPDTTLDMINENRKFKFGQFGYGKYVYPKESLDEVKEFFTMEINQLFGEGT + IKYII" + gene complement(722223..723473) + /locus_tag="Ccel_0625" + CDS complement(722223..723473) + /locus_tag="Ccel_0625" + /inference="protein motif:PFAM:PF07907" + /note="PFAM: YibE/F family protein; + KEGG: dsy:DSY3067 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="YibE/F family protein" + /protein_id="ACL75006.1" + /db_xref="InterPro:IPR012507" + /translation="MESNLTKKLINKKTYIYITTIIISILLLYIGNRFTTNNLDILKD + VDGVEAQTASVVKIIKTSKTEYNLGGDIPNEGKDIAFSAKLLSGKDKDKQITAYQTID + PFIGASQKEVEPGDKVILYKLDNKDSEYDWVMAEYLRTNVLLVLGIIFFILLLIFGRS + KGFNTILSLIFTFAAIFAVFVPAVLQGFNIYIWSIITCLFIICMTLLIVYGPSKKSFS + AGIGCIGGVLVSGILIAIMDKLLKLTGLVSEESLYLLRINTKHPIDLKAIVFAAILIG + AIGAIMDVSMSIAASLAEIQEKLEYTPFSLLLKSGISIGKDIMGTMANTLILAYIGSS + LSVVLLLVSYNSSLIELLNKEMIVVEILQSLIGSIGILFTMPLTSLVCSYLYSDRIKL + PKIDVTGLDKTKIPDEDDYNDGWR" + gene 723716..726286 + /locus_tag="Ccel_0626" + CDS 723716..726286 + /locus_tag="Ccel_0626" + /inference="protein motif:TFAM:TIGR00254" + /note="TIGRFAM: diguanylate cyclase; + PFAM: GGDEF domain containing protein; EAL domain protein; + KEGG: wsu:WS2095 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="diguanylate cyclase/phosphodiesterase" + /protein_id="ACL75007.1" + /db_xref="InterPro:IPR000160" + /db_xref="InterPro:IPR001633" + /translation="MTFKNVKKVILTGFVIVTLLLFFESTIVLAIDNAVIEDVQPKKN + ILILHSYNEGLAWTSNQNTGIIEMIDKEYPNTSTYVEYMDWKNYPTSNILSYLSDYFE + FKYTQKHIDLIITTDDAAFKFALLNRKQIFSDAPIVFSGVNQEDVSKIAKHYKNYTGV + IENIDPTETFRIALRINPNLKKVYVVFDNSESGLSTGRLVMDKVKAMNLEPIPMNNMS + FNELLKVVSKLDNTSIVFFATYYSDGNGKMLEFNLASREISKYSSVPLYHQYDFGLNK + GAFGGDMVSGRLCGNYAAKLAVRILKGESASDIKIISPKATRVVFDYEQLKRFEVPVW + KLPKTAEIINKPFSFFETYKRLVVYVIGAFSILTLFLVVLLVYIRKIRNIRKQLYLSN + EELTQTYEELVASDEELRHQLDEIRSIQKSLSQSEEKYNFMALHDVLTGLPNRRSLLE + DSSRFLGINTGKKTVLLFIDMDNFKYINDTMGHEFGDELINKAGQRLKTALKDLGTLY + RLGGDEFILLIYNIENQFEAEDFMSQVLQSFKDEFEIGNSVLHITFSIGAALYPDHGN + NIEDLIKCADIAMYKAKEQGKNRYVLYDRDMDKAFSERMTIEKLLHTAMDNNEFEVYY + QPQFDLQSQKITGLEALLRWKSSELGNVSPIKFIKVAEDTHLIIPLGEWVLNQACAFV + KELHEKGLQGLTVSVNISTIQILQSGFTRKIIDIINSHKLNPECLELEITETILIESF + TTVFRKLNKLKKMGIRIALDDFGKGYSSLNYLKQLPISTLKIDKSFIDSVSIDEEGRT + ITRHIITLGKSLGMTIIAEGVEFNEQLEYLKKYHCDRIQGYLFSKPLPGEDVKKLLIV + " + gene 726436..726819 + /locus_tag="Ccel_0627" + CDS 726436..726819 + /locus_tag="Ccel_0627" + /inference="protein motif:PFAM:PF02001" + /note="PFAM: protein of unknown function DUF134; + KEGG: csc:Csac_0224 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF134" + /protein_id="ACL75008.1" + /db_xref="InterPro:IPR002852" + /translation="MPRPKKCRRVGFIPGNACFHPEIKSQVQVVLSIEEVEAIRLADY + LAIGQDGAAESMNISRGTFQRIINSARKKMADALIHGKTIRIDGGNYQVESGRSCCRR + QSGECRTVNCDRCTGCMDCHKSTNI" + gene 726833..728092 + /locus_tag="Ccel_0628" + CDS 726833..728092 + /locus_tag="Ccel_0628" + /inference="protein motif:PFAM:PF02579" + /note="PFAM: Dinitrogenase iron-molybdenum cofactor + biosynthesis protein; + KEGG: cpy:Cphy_3017 dinitrogenase iron-molybdenum cofactor + biosynthesis protein" + /codon_start=1 + /transl_table=11 + /product="Dinitrogenase iron-molybdenum cofactor + biosynthesis protein" + /protein_id="ACL75009.1" + /db_xref="InterPro:IPR003731" + /translation="MVDNGCSCGGTDCGSSDCGGSCPSGDGRPQTFLEKTHKLNSIKR + VIGVVSGKGGVGKSLVTSTLSVMMRRKGYEVGVLDADITGPSIPRIFGINKKAQGSEL + GIYPQMSPNGIKVMSVNLMLGQDDAPVIWRGPIIAGVVKQFWTDVIWGEVDYLFLDMP + PGTGDVPLTVFQSIPLDGIVIVTYPQDLVSMIVKKAYNMAKEMNIPILGIVENMSYLK + CPDCGKEINVFGQSKINEVAEGLQLKVLGKMPIDPCVAELCDKGEIEKVNHEHLGNAV + SYIENRLPVGKENEIMKIAIATEGNNISSHFGKCEVFTVVEIENKTIKSKDAVSTEGN + QHGLLPGFLTSLGIETVIAGGMGDGARQKLEDTNIQIISGISGNIDEVIQLYLEGNLK + SKSSGCSGHEHSHEHNHGKCGCSCGNP" + gene complement(728172..729179) + /locus_tag="Ccel_0629" + CDS complement(728172..729179) + /locus_tag="Ccel_0629" + /inference="protein motif:PFAM:PF03601" + /note="PFAM: conserved hypothetical protein; + KEGG: cbf:CLI_0435 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75010.1" + /db_xref="InterPro:IPR004630" + /translation="MVWIRKNTAGILLALGIAIVASWLGGIFPIIGGPVFGILFGIII + NNTIGKPAWSESGVKFTSKKILQYAIVLLGTGLSLTQVWKTGLESLYVMLFTLSFAFI + SAYGFGKLLKVPFNLTSLIGVGTAICGGSAIAAVSPIIEAEEKEVAYSISTIFFFNIL + AVLIFPPLGHLLGFSDTAFGLWAGTAINDTSSVVAAGYAYSNTAGAYATIVKLTRTTM + IIPISLVYAAVTIARKRKAAKQDDTVSYSFKSIFPWFIVAFLAASLLNTLGVFSSSAV + SFLSGTGKFFIVMALSAVGLNANFKEMLKTGFKPLFLGLVVWFTVTIVSIVVQFMTGQ + V" + gene 729310..730209 + /locus_tag="Ccel_0630" + CDS 729310..730209 + /locus_tag="Ccel_0630" + /inference="protein motif:PFAM:PF03466" + /note="PFAM: regulatory protein LysR; LysR + substrate-binding; + KEGG: cno:NT01CX_0182 LysR family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LysR family" + /protein_id="ACL75011.1" + /db_xref="InterPro:IPR000847" + /db_xref="InterPro:IPR005119" + /translation="MIDPKITTFIWAAKLSSYTRAAEMLNLTQPAVTQHIKQLEEHYK + VKLFKKVGRQICLTEEGELLFKYAKEFEASSLFIERTLRNKSAVNKHYNIGTTLTIGE + FVLPGILGQYKKQHDNIDIIIHVHNTDENLKRLTNGELDLSIVEGPFDKNKYKHKKMR + NDELVLVASPASSLAKKGAVIMEDIAFGGKLILREKGSGTRMILENKITEMGLSLSDL + KVYMEVGSIGAIKSLVQANLGYTLVSMEAVRREVRDGTLVVVPITGVRIMREFNFIYT + DMSQNSFIEEFINYIMSFRESVV" + gene 730322..730972 + /locus_tag="Ccel_0631" + CDS 730322..730972 + /locus_tag="Ccel_0631" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: cbe:Cbei_3003 4Fe-4S ferredoxin, iron-sulfur binding + domain protein" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL75012.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MNTIKSFVHKWAWLLLIFFCIVGLVYPKAGIAAIICMLAPVAVS + FFRGRMWCGNFCPRGSMNDILISKISRNKKIPRIMKNMWFRLIFLVVLMGAFTVQFSF + AWGDMVQVGQVFVRMILITTGLTIVLGVIFSHRAWCVICPMGTMASLITKAGNSSRVK + NVAFDKQRCVSCNLCTKSCPMEIDVLNFKSKGEVTHSDCLKCGECVVKCPKDVLEI" + gene 731007..731354 + /locus_tag="Ccel_0632" + CDS 731007..731354 + /locus_tag="Ccel_0632" + /inference="similar to AA sequence:KEGG:Ctha_2703" + /note="KEGG: cts:Ctha_2703 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75013.1" + /translation="MSAIKAKNNYIGVNGSRMNCAQAVLSAFKEKYNIQDDLVERFRN + YGGGRAPDGLCGAYYAVKYILSNYDKERVAELEKYFLENAGALQCSNIRGLKKLSCVG + CVEKSSEFLEKHG" + gene complement(731390..732193) + /locus_tag="Ccel_0633" + CDS complement(731390..732193) + /locus_tag="Ccel_0633" + /inference="similar to AA sequence:KEGG:CKL_1492" + /note="KEGG: ckl:CKL_1492 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75014.1" + /translation="MTQTKRRYWLRVLFVGFIVYAATILTFMLTGNIYLFPSIVLIGN + FLVPVAFVSFFYEKRDWFSVNMSATALCFFYGGALGTIAASLLEPVFISELTFTTAFT + VGIIEEFTKLIGVFIIARHRRYNSMLDGIILGSAAGMGFAAFESTGYAFTAFLQSGGS + LTYTVFITLLRGITSPVGHGTWTAILSSVLLRESVQGRFYINGRVIKSYITVVVLHGL + WDGFPLVIRYLFPWTYSVITGQILLGTTGLLILYNRWRESKLEFSEKKT" + gene complement(732655..732730) + /locus_tag="Ccel_R0023" + /note="tRNA-Lys5" + tRNA complement(732655..732730) + /locus_tag="Ccel_R0023" + /product="tRNA-Lys" + gene 732903..733433 + /locus_tag="Ccel_0634" + CDS 732903..733433 + /locus_tag="Ccel_0634" + /inference="similar to AA sequence:KEGG:CKL_2293" + /note="KEGG: ckl:CKL_2293 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75015.1" + /translation="MKAVVVYKSKSGFVKKYAQWIAEELQADIYEASKIDVNMLMLYD + TIIYGGGLYAVGINGLKILTKNLDKLKDKKLVAFATGATPSRSEDIEKVKNANFTPEQ + QKYIRFFYLRGGFDYTRLKLIDKVLMNLLKLKIKSKNKNKLIPDEKGMLAAYDEPIDF + TSKKNIEELILYVKAK" + gene 733549..734583 + /locus_tag="Ccel_0635" + CDS 733549..734583 + /locus_tag="Ccel_0635" + /inference="protein motif:PFAM:PF01212" + /note="PFAM: aromatic amino acid beta-eliminating + lyase/threonine aldolase; + KEGG: cac:CAC3420 low specificity L-threonine aldolase" + /codon_start=1 + /transl_table=11 + /product="aromatic amino acid beta-eliminating + lyase/threonine aldolase" + /protein_id="ACL75016.1" + /db_xref="InterPro:IPR001597" + /translation="MIRFNCDYSEGAHPKVLEKLLQTNMEQTAGYGMDPYCNKAAGMI + KDKCLRQDMEVHFLVGGTQTNLTVISAALRPHQGAIAANTGHICTHETGAIEATGHKV + IELSSRDGKLTAEQVAETVKSHYSDESREHTVQPKMVYISNPTEIGTIYSKKELFELS + RICRENSLFLYMDGARLGYGLCAEDNDLDLPTIAQLCDAFYIGGTKIGALFGEALVVC + NEELKKDLRYIIKQKGGMLAKGRLLGLQFISLMENDLYFEIATHANKMALLIKEALLK + KGYSFLISSTTNQQFPILPNDILVRLKSKFEYSFWQEIDENTSAVRFCTSWATSPEDV + RKLVEEIENG" + gene 734747..735076 + /locus_tag="Ccel_0636" + CDS 734747..735076 + /locus_tag="Ccel_0636" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2177 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75017.1" + /translation="MEELFDINVLKAQIKAELKAELNVDVDEEKEFHKQKQTNKQINY + NVLTQKQYQGQKAENDADNDAENKAENEAEAESKAKAKAGAEAENETKVENEAKAENQ + KQVKYYV" + gene 735146..735601 + /locus_tag="Ccel_0637" + CDS 735146..735601 + /locus_tag="Ccel_0637" + /inference="similar to AA sequence:KEGG:Cthe_2178" + /note="KEGG: cth:Cthe_2178 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75018.1" + /translation="MEFKDQTLQEETGKAKKKNKISLEKDSIQYNAQDLDQEQKMDVN + PTQLNSQNIRLYLSRGENNHSGKITGTAYLKEGKEIVKNAGIHLFLGHDRRYPVYKTN + SDENGNFIIDDIPPGFYTIVAKYDGNLKYESHYIKIFGGQIVHQSVLLE" + gene complement(735742..736452) + /locus_tag="Ccel_0638" + CDS complement(735742..736452) + /locus_tag="Ccel_0638" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + KEGG: ckl:CKL_2395 short-chain dehydrogenases/reductase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75019.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /translation="MKTAILTGASRGIGLAIVKRLILMGYKVYGIARSFENTEYSNNN + FIPINCDILNTNELQRIIKQIESEETEINLLVNNAGVGFFGPHEQLKINDIQTMIRTN + LEAPLILCKLLLRALKKSNGTIISISSVTAKKISTHGCSYASSKAGLSHFSASLFEEV + RKYGVKVTVIHPDITSSNFYDKLDFTYDSESDTVLMEEQTADAVEYILGCSENMVVND + ITLRPQKNRIRRKPPAGD" + gene complement(736449..737462) + /locus_tag="Ccel_0639" + CDS complement(736449..737462) + /locus_tag="Ccel_0639" + /inference="similar to AA sequence:KEGG:Csac_0382" + /note="KEGG: csc:Csac_0382 DNA repair photolyase-like + protein" + /codon_start=1 + /transl_table=11 + /product="DNA repair photolyase-like protein" + /protein_id="ACL75020.1" + /translation="MSKLLQKSGKNLFNTIYVEEQAYDYTITRMVLEKYPDIPVITIR + NYKDIFNRGNQHFELQKNRQSLILAVKGSPFLYNGPHVCQDFGYSDFYYTSFLLNCIF + DCEYCYLQGMYPSANIVAFVNINDFKNEIKNILDGKRAYLAVSYDTDLIGFHNVIPYW + DFFHDFFAEHPNINAEIRTKSANEMFYSEFSPAENIVIAFSMAPQEIIQKYERLTPPL + TARIKAVKTAISKGFKVRLCLDPVILNSGSEKLYPPFFRNLFTEINPDELKDVGYGFF + RMSKDFFKRIENQKRSSELFAEEYSVNHDIVSYPHELSKTVMTRHLSVLEEYLPKEKI + FTL" + gene complement(737422..738261) + /locus_tag="Ccel_0640" + CDS complement(737422..738261) + /locus_tag="Ccel_0640" + /inference="similar to AA sequence:KEGG:Teth514_2337" + /note="KEGG: tex:Teth514_2337 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75021.1" + /translation="MIFIVTALMLEAAPIIDFFNLKKDMKILPYSVFKGSDIALIVSG + VGKLKSAMASVYLYNMYGTGENNVLINIGFCGSGSKSFETGSLLVVNKVTDMDTGRDY + YPDVFFDAGIPQISIQCYSKVVKAVDMPVQRDLFCDMESAGIMEASKKFFFAHNVLIL + KIISDYLEPERLDKAKLKSYIEKKMPALRSIIEEMRHLNEGYGEMSLDEENSAIQSLC + LSLRFTQAMKLILTKEVRRARIKGFEPLVSLKQFTGIRSDSKEEGKKYFEQIITKIRQ + KSV" + gene complement(738486..739031) + /locus_tag="Ccel_0641" + CDS complement(738486..739031) + /locus_tag="Ccel_0641" + /inference="similar to AA sequence:KEGG:Cphy_1776" + /note="KEGG: cpy:Cphy_1776 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75022.1" + /translation="MRKQRISHPEKWILIGIPFIFIFGSLFHFLYSWSGKKVIVGLIS + AVNESVWEHTKLLLVPIILWWLIYYVIKQKKYDIDANLWFTGMLVAIVSSILTMICFY + YFYTQAFGIQSLVVDIVIFLLAIIIGQCLGLHIYKYSQGLGTWLSILIIAAIFALIVY + WTFQPPHIPLFFDKVNGKYGI" + gene 739192..739833 + /locus_tag="Ccel_0642" + CDS 739192..739833 + /locus_tag="Ccel_0642" + /inference="protein motif:PFAM:PF02525" + /note="PFAM: NAD(P)H dehydrogenase (quinone); + KEGG: cdf:CD1543 putative acyl carrier protein + phosphodiesterase" + /codon_start=1 + /transl_table=11 + /product="NAD(P)H dehydrogenase (quinone)" + /protein_id="ACL75023.1" + /db_xref="InterPro:IPR003680" + /translation="MKKLLYISVNTKPEEMSSSKTVARKLINSILEKHPSMALEEVDL + YREHIPQLKYSYFESRSAIVNSEALAKLPQDEQNEVTQIIKLCDQFRAADIYIIASPM + WSLSFPAPLKEYIDCVVQSGKTIAFDENKPYGLLNDKERTFIYVQSSGANIPWIIRPA + LNKGLNYVHDIIRFLGISKFEELLVDGTGTTELERQEAIEKAASRIETLVDQI" + gene complement(739911..741539) + /locus_tag="Ccel_0643" + CDS complement(739911..741539) + /locus_tag="Ccel_0643" + /inference="protein motif:PFAM:PF00704" + /note="PFAM: S-layer domain protein; glycoside hydrolase + family 18; + SMART: chitinase II; + KEGG: aoe:Clos_1547 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 18" + /protein_id="ACL75024.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR001223" + /db_xref="InterPro:IPR011583" + /translation="MRLKKCIIPLLIFVFLFQTSTSAYESISFLYAGNTTTYINNVNR + SGTNLTTVSPDYFEINSNGTLKKTIKVDPLFVETMHARGIKVVPYLSNNWDRTLGRAA + LANQNSFVASLSAEIVRLGCDGINIDIQNLTEADRNAFTAFIRLLRSYLPKTKILSVC + VAANPWGSTIGWQGSYDYAALGTISDQLFIMAYDEHYTGSAPGAVASFSFVEKSVNYA + LKYVPSTKIVLGVPFYGRYWKQGAASGGYGITVSDVERLVATCKSKTWYDSTSQCARA + TVTVTSTDNAVIWGSSRLSAGTYDIWYENETSLEKKLSLVSKNNLLGAGSWALGQEPQ + RFWNNYSQWLIGKPFIDISNHWAQSYIIDLFQKGIVSGMPGKRFVPDGSLTRAEAAAL + LVKTLGLQNETATASFADTKDHWASKQIAIVKEKGIFSGYSGNMFYPERKITREEFAV + VCDKILFSPDTVDFSQRIFSDVSPESNPWSNKSIIVLSMNNILSGYPDGTFRPKKTIT + RAEATRVIAALLEYPGGFTISPTHIQSPSPVPPR" + gene 741721..742293 + /locus_tag="Ccel_0644" + CDS 741721..742293 + /locus_tag="Ccel_0644" + /inference="protein motif:PFAM:PF02283" + /note="PFAM: cobalbumin biosynthesis protein; + SMART: AAA ATPase; + KEGG: tte:TTE0381 adenosylcobinamide + kinase/adenosylcobinamide-phosphate guanylyltransferase" + /codon_start=1 + /transl_table=11 + /product="cobalbumin biosynthesis protein" + /protein_id="ACL75025.1" + /db_xref="InterPro:IPR003203" + /db_xref="InterPro:IPR003593" + /translation="MKSEVMGEIVLVTGGARSGKSTFAEKLAKEYGSEVLYVATAIPL + DDEMRLRIKKHREQRPANWETVETYKDMDILLEEKYRNKKAVLLDCITVMIANIMFEV + CHDFDKMVQEDMAIIEEAVNLQMDKLIVVARSSGIPFILVTNETGMGIVPENKSARLF + RDIQGRANQKLAAAAKEVFLCVSGIPVKIK" + gene 742315..743067 + /locus_tag="Ccel_0645" + CDS 742315..743067 + /locus_tag="Ccel_0645" + /inference="protein motif:TFAM:TIGR00317" + /note="TIGRFAM: cobalamin 5'-phosphate synthase; + PFAM: cobalamin-5-phosphate synthase CobS; + KEGG: cth:Cthe_3152 cobalamin synthase" + /codon_start=1 + /transl_table=11 + /product="cobalamin 5'-phosphate synthase" + /protein_id="ACL75026.1" + /db_xref="InterPro:IPR003805" + /translation="MILLKRFLLMIQFFTTVPIPVSLNVNEEDFGKGLALAPLAGLLI + GGLVACGGYVLNMFFAPAITAVLVVILYILLTGGIHFDGLGDTVDGIFSNKPKEKMLE + IMRDSRTGTYAVLVIVCVLGLNAVLMYSIISAHMYFTLVLMPVAGRIGSVTGAAVSRY + ARSGPGLGKSFIDYCGLKEMLSAAVISLIVFFVFKVFEGIFLCLFMFISATLLVKILG + RKIGGATGDVLGAVCELNQTIFLLISYLLVFK" + gene 743113..744171 + /locus_tag="Ccel_0646" + CDS 743113..744171 + /locus_tag="Ccel_0646" + /inference="protein motif:TFAM:TIGR03160" + /note="TIGRFAM: + nicotinate-nucleotide/dimethylbenzimidazole + phosphoribosyltransferase; + PFAM: Nicotinate-nucleotide-dimethylbenzimidazole + phosphoribosyltransferase; + KEGG: cth:Cthe_1297 + nicotinate-nucleotide--dimethylbenzimidazole + phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="nicotinate-nucleotide/dimethylbenzimidazole + phosphoribosyltransferase" + /protein_id="ACL75027.1" + /db_xref="InterPro:IPR003200" + /db_xref="InterPro:IPR017846" + /translation="MTFEEAINSIKELNIETMQKAQKRLDNLTKPLGSLGRLEEIVKQ + LAGITGELFPCVKNKKIVIMCADNGVVEEGVSSCPKSVTSSVTQNFLKGFTGVNVLSR + HSRADIVVVDVGVDDDIDCPGVINRKIRKGTWNIMKGPAMTRNEAIKAIETGIEIVGK + LKEKGVNLLGTGEMGVGNTTTSSAVASVLIGNDIGEMVGKGAGLTQKGLINKIEIIKN + AIDINKPNPSDPIDVLAKVGGFDIAALTGCFLGAAAYRLPVMIDGFISATAALAAIKI + KPECRNYILPSHGSAEPGNKKIMEALDMSPMLLLEMRLGEGSGAALAFHIIDAAVAAY + NEMGTFGDAKIEQYKPLE" + gene 744280..744462 + /locus_tag="Ccel_0647" + CDS 744280..744462 + /locus_tag="Ccel_0647" + /inference="similar to AA sequence:KEGG:Clos_0104" + /note="KEGG: aoe:Clos_0104 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75028.1" + /translation="MFEYKYVQATLGGFFTEANHHEIIDKYAGEGWRLVQVLPMYYNS + HGKPTDYEIIFEREVG" + gene 744677..750064 + /locus_tag="Ccel_0648" + CDS 744677..750064 + /locus_tag="Ccel_0648" + /inference="protein motif:PFAM:PF00041" + /note="PFAM: Fibronectin type III domain protein; + KEGG: swd:Swoo_0198 YD repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="Fibronectin type III domain protein" + /protein_id="ACL75029.1" + /db_xref="InterPro:IPR003961" + /translation="MMKKKLGSKFISLLLVVCCLNLMLLPSSVFAAANSSILPPSNLA + VVPTSPDDVKVTWNSVYGANGYNIYGISEGQLKQLGTTTSTYYNFNDLPEGTYTYVVS + TLSADGESGPCAPVSVDIVYPEMEPPATLTNTFQNINDITLNWSAASYAQTYNIYKIS + VDGEKTLLTSVTGRTYTLTNAPAGSYSFAVTAVNSLYGESPLSSPVETEVVFPVMSAP + SNVTSKLQNGTDVILTWNAATYANSYKIYELIDEQEVLKATANSTTFTLTDVTAGSHT + YVIHSVSSRFGESAEGARVAATLGDVLMPPPGNFSYTVNNGKDIVLNWTSVPNATNYR + IYQVINGQKVLKSTVTRTTVTFTNMTAGDYTYEIHSYSTTYGESKEGSTLTVTIEGQS + MLAPTNLQYSLANQNDITLTWAAAANATSYQIYQLVNGEKQLKKTVSTTSVSFTNMPE + GEYHYMVTSVSSLYGESQSGSEVTFSIVFPTMKAPGNLAYKVQNVNSVVLSWSAADYA + NSYKVYEVVNDQKTLKTTVNGLTATIYNVSAGDHTYEVHSLSSRFGESAEGSRISLAV + KQEIAAPDDLAYSIANGNDITLKWTGAEFATSYNVYQVVEGQKVLKKNVTTTSVTFTN + SSAGDYDFVVTSVSNVFGESSNGSEITFSLTFPVMKAPTDLTYNIQNINNVVLTWSAV + TYASSYKVYELVEGKEVLVTTVSTPTARISNVTAGDHTYVVHSVSSRFGESMEGSGVS + LTLKQEMLAPTDLAYSMANGNDVTLKWTASQYATSYSIYQVVNGEKKLVKSVTTTSVT + FTNIPAGDYQYVVTSVSSVFGESSSGAEIKLSVVFPTMTAPGNLAYKIQNANNVILSW + DAVNYANSYKVYELTNGQKALKTTVYYATATLSNVLPGDHTYVVHSVSNRFGESLEGG + QVSLNISQQMLPPANLEYTIVNGNDISLKWLAAEAANSYNIYQVIDGQKKLIKNVTTT + TVTLTNMPAGEYDYIVTSVSRVFGESSEGSETTLSLVLPTMSAPDNFVQSIVNGNDIV + LKWNAASYATAYNVYQINNEKKSLVKTLTGNVTTVTFTNMPSGDYSYQVYSYSTRFGE + SPEGSKVNFQLVWPIVEPPVLTYSLYDVNNITLSWKASSWANEYRVYELNGGDRQLLY + KGTALSFKIYNLSEAVHNFEVTAYNTRFGESEPSDRITENIIFPDMQAPRATVKVLDS + TTASISWSFVTYANGYNVYELVDGTPVLLIENLNNLSYVVNNLSYKDHQFYVTAYSNS + FGESEPSNMVTAVLIVDIQAPVTTSNAPVNWIKQSPVVVTLSATDNMTGVAKTYYSLN + DSEYIEGTTITVDKAGVNKISFYSVDKVGNKEDVKTAEVRIDKSAPVTTAKVPADWSK + EDVAVTLIAEDQQSGVAKTYYSVDESEYLEGTSFTVKGDGIHKISYYSVDASGNEEEV + KTTEVKIDKTAPVTTANVPADWSKEDVAVTLIAEDQQSGVARTYYSVDESEYLEGTSF + TVKGDGIHKISYYSVNASGNEEEVKTTEVKIDKTAPVTTAKVPADWSKEDVTVTLTAT + DEQSGVAKTYYSFDESEYLEGTSFTVKGDGIHKISYYSVDASGNEEEVKTTEVRIKKS + EPVITLNMSDEYSICTNLRLSYSIEKNGYEIVCEKMVVLGPNETTGKVVKNNSCIKLD + KPGKYTVTVTIKDADGNTTTVEKHFEVYLPAVVIVTPCIVICNKGVLTVNVLVPGMGC + KKEFDLNTATLNGVKALSDNKGYYMQAKHGQFKFDRSDFKWTFSLSNIMEFRCYVDGY + LVIGRTNVIVL" + gene 750568..752166 + /locus_tag="Ccel_0649" + CDS 750568..752166 + /locus_tag="Ccel_0649" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: cac:CA_P0119 xylan degradation protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75030.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKIIRLLGLTMVLMLVFTMVLPLNLYAASTVTVDWGTNYQTID + GFGVSEAFHQSNNIALLGDTKKKEIYDLLFSTTKGAGFSIFRSILGDGGTWGNATDGP + NKTMQPSETTWDWKESNDDQISMIREIQSGYGINKILYTVWSPPAWMKSNGSTSRGYL + KTDKYQAYATYLAEHIKNYKSKFGIDITHIGISNEPNLETDYSSCTWTAAQFKTFMKD + YLVPTFDKEGITAKVIMGEPMSCTESFAIDCLNDATALTRTDIVGCHNYGSSYTTFPT + TKAKGKGIWQTEISDMNGNDTTITDGLKWSKQIFDFMTITQGNAWNYWWGACYKTYNG + EGLIQMDMNSKTYKVAKRLYTVGQYSRFIRPGWQRFAATSNPVSNVYVTAYKDPATGK + FAIVAMNDGYTNQSITYTLKGFTPDSVTPYTTSSTQDLAEGTKITVSGGSFTANLAAN + SITTFVGGSDVNPGIYGDVNGDKVVDAIDFALYKQYLIKQISTFPSPDGMKLADVNGD + NSVDAIDFALIKKYLLGSITKLPV" + gene 752403..753686 + /locus_tag="Ccel_0650" + CDS 752403..753686 + /locus_tag="Ccel_0650" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75031.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 754136..754402 + /locus_tag="Ccel_0651" + CDS 754136..754402 + /locus_tag="Ccel_0651" + /inference="similar to AA sequence:KEGG:CAC3440" + /note="KEGG: cac:CAC3440 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75032.1" + /translation="MNNIDAAIDRIKILECPTGEIENRVAGILENYGVADRNKVNISR + VKNLDQDEAQAYKVNFHGEDNSIVFLAKSGLDDYTATVVDVYKK" + gene complement(754502..755587) + /locus_tag="Ccel_0652" + CDS complement(754502..755587) + /locus_tag="Ccel_0652" + /inference="protein motif:TFAM:TIGR00912" + /note="TIGRFAM: spore germination protein; + PFAM: Spore germination protein; + KEGG: amt:Amet_1283 spore germination protein" + /codon_start=1 + /transl_table=11 + /product="spore germination protein" + /protein_id="ACL75033.1" + /db_xref="InterPro:IPR004761" + /translation="MKEVKISKLQYGLLVFTFFFGSTLIYNPAESTKTDAWITMLLGT + IGGLVLITVFLYIAKLNNGKTLTEILDNCFGKVFGKVISIYYIIFYLYKSSLNTRLFV + GFMNSVSFTETPVIVIFIVLSIGTLYSARGGLTVIGKTSEILAPILLLSSLIVSTSIF + TIKDFTSFTPILLEIAPVIKSAVNLLSTVFGDIFIFLLIIPYTNSKKGLFKTTYWVTF + IFFLIVESSILRNIIVVGPLMGTLTYTSHVSAQLIPTINIEPIIDISLLIGVGFKIVI + CLYAVSKITADIFKLEEYKPILTAFAVLNIALGYIILPKNADVFIDWTKSYGQDFIAF + LPDLFFPLLMLVISIFKNRKKTQDVCA" + gene complement(755832..757000) + /locus_tag="Ccel_0653" + /pseudo + gene complement(756993..758585) + /locus_tag="Ccel_0654" + CDS complement(756993..758585) + /locus_tag="Ccel_0654" + /inference="protein motif:PFAM:PF03323" + /note="PFAM: GerA spore germination protein; + KEGG: cac:CA_P0020 spore germination protein, GrkA" + /codon_start=1 + /transl_table=11 + /product="GerA spore germination protein" + /protein_id="ACL75034.1" + /db_xref="InterPro:IPR004995" + /translation="MTMFKVFSKKSKSKKMNQEKNTSNPNNTSKKDNIIKIPKSIGSI + KDILNQEFTLCSDFIIREVVLGKLNVKIIIASFDGFVDKKILAENIIEPIMQYSQNTK + ISSVYTLLKEKIISSGDLEELNTLKDSIDGILSGNAVLFVEDEEKAFKIGLKAPEMRA + VEQPDTEISIKGSKEGFTENLLTNTTLIRRRIKNSNLKVESFKLGERTNTDIVICYIQ + GIAQPEIIDELKKRINKIKTDAILTSGYIEQFIQDGSFSLFPMVGNSEKPDKVAAKLL + EGRIAIISDGASTVLTIPYLVIESIQAQEDYYGEFIFASSMRILRFIALLISFYLPAL + YVALISFHQTTIPFKLMLTMAAARQGIPFSAFFETLIMLFAFEILREAGLRMPRSIGQ + AVSIVGAIVLGDAAVSAGIASAPIVIVTALSGICSFIVPPLIKAGSIIRILMLISANA + LGFFGMATLTNLIIIYLCSKKSFGIPYLAPISPFRATDLKDSLIVVPIWAMFGRPHSL + SHGQYSKRTRGKSFSTRRKQNG" + gene 758851..759054 + /locus_tag="Ccel_0655" + CDS 758851..759054 + /locus_tag="Ccel_0655" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75035.1" + /translation="MYTRVAVERKPQKSSSSQYSNSQKKPSASKSEGKKPKVRVTEFS + QIVALLLNDPDSVTRDEFALPEC" + gene 759048..760844 + /locus_tag="Ccel_0656" + CDS 759048..760844 + /locus_tag="Ccel_0656" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bcj:BCAL2501 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75036.1" + /translation="MLISGQFAEIMEGIKALGEAAKASLPHIEGKVWEQLIGVDLTQP + LEEQADEGGQPQGQTAEKLTENDIVIEQVEKGEITPELLEDMNLKDGETKELNGSSNP + HTTESIMEEFDTQKAQKSGNSFADGVKTRAQNAGKILDQIKEFVIKWLKDNWWKLLLG + VLGALAGIIAAEIVTGGAITAALPVIINAITTAMNAAMVVSIIDTIAKAAGYIETYLT + QGWARHIQSAAIALATALAMGLVELAMALGFKFAEKGVKAAKGGIKKGIKATAGGAKK + LVTIAGKGIKSLLKSGAKLVSKTGRMIIENGKIIIKSLKNGFSKGVKKLKGLIDKILS + KFRFKKIKIERKGLHIRIYGEVNPWVLLYDGTIEKIDRKNTHAGDIIEHEGKRGIVIT + RNTKPTAKVNDLNALSQGERKAIYENALKNGGKVDVKGAVEAIERAIAKGTPKTWEEF + LAVNSERSVEELSSSYIKLIEGQSPWPENFVPQQKTLKPGDTFQMTLDNTQPVTSPGG + FATFDNIPNVNYVRNNLAVKSDWKVDCSKVVTYRVKQGVELPVLEGPVGPQIDINADK + YLPGGGSQIQMLLDRSVNKMDYLEVVSIRSIN" + gene 760857..761414 + /locus_tag="Ccel_0657" + CDS 760857..761414 + /locus_tag="Ccel_0657" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75037.1" + /translation="MTIENFIWDSQNQSVSWTYNGKIIKETYENAYFATVNTQENFVY + VEAGQNYSQDQVYHLSFDGKRIFTLDKLSGKVSWIYQDKMVEVACKGIVNAQFYIENG + VIIVITALSQPHRKLQGFALDGTVLFEKEPPHGYSFVNLSTYKNKPSAVCDGGKINAD + AYGRSSWHFVIDIKTGDMTKENLAY" + gene complement(761668..761964) + /locus_tag="Ccel_0658" + CDS complement(761668..761964) + /locus_tag="Ccel_0658" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: amt:Amet_3180 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75038.1" + /translation="MSENRLLCPVCNNSNFLIKYEATYVYSYIIDSDAPGLRNKNEFL + PFMFDNREQKDTKQFVECITCGSKFRCYFNQWDNKIGFKALQEAISQHQPDNIL" + gene 762096..762614 + /locus_tag="Ccel_0659" + CDS 762096..762614 + /locus_tag="Ccel_0659" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: cbf:CLI_3229 acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL75039.1" + /db_xref="InterPro:IPR000182" + /translation="MNYTIRPIRVEDAADMNEMYIMDGVRENILGLFSARIDQTEEFI + KTAGSNQHHLVAETNENGVKKVVGSVALIVSQNPRTSHTASLGIMVHKDYQGKGIGTA + LLKKILDLADNWLMLIRLELNVFVENERAVNLYKSLGFQIEGTKKYMAVKNGKYADEY + LMARYNLTDKLS" + gene 762748..765120 + /locus_tag="Ccel_0660" + CDS 762748..765120 + /locus_tag="Ccel_0660" + /inference="protein motif:PFAM:PF06733" + /note="PFAM: DEAD_2 domain protein; + SMART: Helicase-like, DEXD box c2 type; helicase c2; + KEGG: cth:Cthe_0289 DEAD_2" + /codon_start=1 + /transl_table=11 + /product="DEAD_2 domain protein" + /protein_id="ACL75040.1" + /db_xref="InterPro:IPR006554" + /db_xref="InterPro:IPR006555" + /db_xref="InterPro:IPR010614" + /db_xref="InterPro:IPR014013" + /translation="MGKPEIKISIRNLVELVLRSGDIDNRLVSSGRMLEGTKIHQKIQ + KQGGELYNKEVSLAHNYETQDFIFRLEGRADGIISEPGGVVIDEIKSTARPLELIDEE + FSILHWAQAKCYAFIYALQNELQNIYVQLTYFHIDTEETKNIRKLFSIKELNEFIEDL + LDKYVVWASISDSWNKQRDDSIKSLQFPFKSYRRGQRELAVAVYKTIMQGKKLFAQAP + TGIGKTISTLFPAVKALGEQHISKIFYLTAKTITRQVAEEAFSKMRECGLVFRTITLT + AKDKICFNKGGSCNPDFCEYAKGHYNRVNNAMEDVLNTSQNLSREVIEEYALKHKVCP + FEFSLDLSLWADCIVCDYNYAFDPRVYLKRFFLNNTGDYAFLVDEAHNLVDRAREMFS + AQIHKSAYLEAKKLMKSKVPKVAKILNKINSYMVTLRKQCAEEGFIISKTELKDLYRL + LNNFISESEEWILKNQNNNIEGFEQLLEVYFDSIAFTRMADFYDERYVTFIETKSMDV + RVKLFCLDPSYLLSDAVKRGKTAVFFSATLTPVNYFMDILGGDKEDYNINLASPFDKD + NLCLIVNDNISTRYKSRDKSYDKIVDIIWSSISKRTGNYVVFFPSYKYMNEVYTRFTE + QYPETNTIIQETSMTEEERESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLKGDRLIGA + IIVGVGLPQVSPEQNIIMDYFKNKNRMGFENAYMYPGMNKVLQAAGRVIRSEHDVGTV + ILLDERFSNGNYRRLFPKHWEHVLRVQDTGQLEKRLEQFWIDKDMDKVNT" + gene 765117..767243 + /locus_tag="Ccel_0661" + CDS 765117..767243 + /locus_tag="Ccel_0661" + /inference="protein motif:PFAM:PF00580" + /note="PFAM: UvrD/REP helicase; + KEGG: cth:Cthe_0968 UvrD/REP helicase" + /codon_start=1 + /transl_table=11 + /product="UvrD/REP helicase" + /protein_id="ACL75041.1" + /db_xref="InterPro:IPR000212" + /db_xref="InterPro:IPR014016" + /db_xref="InterPro:IPR014017" + /translation="MTQSEIDWENNKLREIINKEAFKDLSTEQRKAVLTVEGSVLLIA + GPGSGKTTVIVNRVYNLIKYERVNPKSILTLTFNKAAQLEMDRRFQKLYGNHVKEKVQ + FSTLHSFCNRVVRDYEIMKGRSLRRIEGTDENVNKKILLKDIYYSINSTKINDDELDN + LINEISYIKNKMIKNGDDSYFSSKKFSKVYRAYEEHKKQNLMIDFDDMLTYAYSILSR + FPQILDWYKKRYTYIQVDEGQDLSNIQFAILKLLSGPDGNIFIVADDDQSIYRFRGAE + PQYILDMSSEFNNLKLFRLENNYRSSLNIVDLTSKFIMKNDKRYLKSHKTKNKRADDP + FILSVENESGQSDIVLKKISELLTGNRSISIGILYRNNLSSILVADKLQRNSISFRIR + QNRLFFFRHWLVQEVCAFLMFSLDGYDTESFTKICFRMNRFISKTMLECALQGEERDN + VIDRIINNHDLKPFQLTAMRDLKGEFASLAKKNPWSALEYIKNDFRYLESVKEYSSIS + GQSFDYFNRLFGILHGISVDCPTISAFLVRLQELEKIFEAGGVQNDWEKNQITLSTLH + SSKGLEYDSVFMIDMINSEIPGDKVLENSEKITLEEERRLFYVGMTRAKKDLYLLNPC + TLNDEKFMPSIFINEVVQLLQKDIINNISEGKFVNHVKFGRGMVVAINKEHGSDRHMI + EIKFFKVGCRKLDLQHCIDKKLLKFE" + gene 767327..767893 + /locus_tag="Ccel_0662" + CDS 767327..767893 + /locus_tag="Ccel_0662" + /inference="protein motif:TFAM:TIGR01668" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, + variant 1; hydrolase, HAD-superfamily, subfamily IIIA; HAD + superfamily (subfamily IIIA) phosphatase, TIGR01668; + PFAM: HAD-superfamily phosphatase subfamily IIIA; + KEGG: cth:Cthe_0855 HAD family phosphatase" + /codon_start=1 + /transl_table=11 + /product="HAD superfamily (subfamily IIIA) phosphatase, + TIGR01668" + /protein_id="ACL75042.1" + /db_xref="InterPro:IPR006439" + /db_xref="InterPro:IPR006549" + /db_xref="InterPro:IPR010021" + /translation="MIEKYYPDLYFDSIRHIDINILKEKGIKGIILDIDNTLVPMHTK + DADENVINWVAELKKTGFKVCILSNASLKRVTRFNKEMSITAIHRAYKPAGKAFLNAA + DKMGLEPEKVAVVGDQIFTDIYGGNKVNMLTVLVKPIDKKEILYVRLKRHLEKRILRR + FSNAHKSRLEIRNEWKKKRLQIERSRLN" + gene 767913..768797 + /locus_tag="Ccel_0663" + CDS 767913..768797 + /locus_tag="Ccel_0663" + /inference="protein motif:TFAM:TIGR00507" + /note="TIGRFAM: shikimate 5-dehydrogenase; + PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate + dehydrogenase substrate binding domain protein; + KEGG: cth:Cthe_0854 shikimate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="shikimate 5-dehydrogenase" + /protein_id="ACL75043.1" + /db_xref="InterPro:IPR006151" + /db_xref="InterPro:IPR011342" + /db_xref="InterPro:IPR013708" + /translation="MNLIEVVNGKTQLYGVLGNPVQHTKSPFIHNTLFKEFEINAIYL + PIHVDKGKLEQVMDGFRAIKFSGFNVTVPFKKDIINHLDEVSAEGKLMGAINTVINKD + GRFIGYNTDAEGFVRDFSDGFETTFKGKRVMLLGAGGTSRAIAVRLASEGIEHLTIVN + RTEANAQSISNLVNSNFGDIVSTILPEKEILDRELENNHIIVNTTPAGMSTYLDSTPF + DLDFNFNGTQLVYDVLYVPKKTRFLEQAEKTGCKIRNGFGMLINQGVSAFEIWTGMQV + GREQTNKLLKKIENIEVF" + gene 768860..769126 + /locus_tag="Ccel_0664" + CDS 768860..769126 + /locus_tag="Ccel_0664" + /inference="similar to AA sequence:KEGG:Cthe_0851" + /note="KEGG: cth:Cthe_0851 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75044.1" + /translation="MVTLKNYMEEVVFNLIDSVLNDIDMCKCELCIKDIAALALNSLP + PKYIVSEKGELYSKVNSLRSQFEVDVISAITKAAVLVKKTPRHK" + gene complement(769138..769776) + /locus_tag="Ccel_0665" + CDS complement(769138..769776) + /locus_tag="Ccel_0665" + /inference="protein motif:PFAM:PF09335" + /note="PFAM: SNARE associated Golgi protein; + KEGG: lwe:lwe1513 DedA family membrane protein" + /codon_start=1 + /transl_table=11 + /product="SNARE associated Golgi protein" + /protein_id="ACL75045.1" + /db_xref="InterPro:IPR015414" + /translation="MTSIIHNLLMPLIDIIEGMGVWGIGLWMLFESSCIPLPSEIILP + FGGMMASQGSITLLEANIAAAVGSLIGSMFAYFVGSYGGRPFILKYGKYFFVSEKNFY + KAEEVFKKRGMLAVCLGRLLPVIRTFISLPAGIAKINKFKFIIFSTIGMLPWNFTLIY + LGYVFGKDYETKIRPYFKGFENIVIALILICIVLFVIYKIISSRRNSKSMGK" + gene complement(769795..770928) + /locus_tag="Ccel_0666" + CDS complement(769795..770928) + /locus_tag="Ccel_0666" + /inference="protein motif:TFAM:TIGR00350" + /note="TIGRFAM: cell envelope-related function + transcriptional attenuator, LytR/CpsA family; + PFAM: cell envelope-related transcriptional attenuator; + KEGG: cth:Cthe_0727 cell envelope-related transcriptional + attenuator" + /codon_start=1 + /transl_table=11 + /product="cell envelope-related transcriptional + attenuator" + /protein_id="ACL75046.1" + /db_xref="InterPro:IPR004474" + /translation="MNTRKFTYIITIVVGLFLFGMGTVFLYYANSVTGAAGNNSLPAI + LEGLNATTNKEPMNFFLLVGDKSSGNTDSMLVANYNPQNSEISIVTVPRDTNVKLKNN + ILPKINAAYAAGGRNHEGARYASEIVSNLTGININYYVHINISAIKKITDMLGGVYFD + VPVDMKYDDPTQNLHINLKKGYQLLDGDKVEQLLRFRKPNGERYTKELKEFYDGSDIK + RTEMQMKFIKEFIKQKLKVQNIPKLNPVLNYAFENIITNMTLSDALKMTSGLISISPD + NFNSFRLDGKDKVINKGWYYIYNGNMINIETKESLPAAEIVEKYFFSPNGIATPSGEL + YVPDESNDDADETKAPPAVKKKPAIKKQNPSNTETDTKGTSKG" + gene 771205..772941 + /locus_tag="Ccel_0667" + CDS 771205..772941 + /locus_tag="Ccel_0667" + /inference="protein motif:TFAM:TIGR03336" + /note="TIGRFAM: indolepyruvate ferredoxin oxidoreductase, + alpha subunit; + PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein; thiamine pyrophosphate protein domain + protein TPP-binding; + KEGG: cth:Cthe_0613 thiamine pyrophosphate enzyme-like + TPP-binding" + /codon_start=1 + /transl_table=11 + /product="indolepyruvate ferredoxin oxidoreductase, alpha + subunit" + /protein_id="ACL75047.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR002880" + /db_xref="InterPro:IPR011766" + /db_xref="InterPro:IPR017721" + /db_xref="InterPro:IPR017900" + /translation="MKKLMLGNEAVARGAYEAGCSVAAAYPGTPSTEITEYISKYDDI + YSEWAPNEKVALEVAIGSSIGGARSICSMKHVGLNVAADPLFTVSYTGVNGGLVIMVA + DDPGMHSSQNEQDSRFYARSSKVPMLEPSDSQECKDFVKQAFSISETFDCPVIVRLST + RVSHSQSAVEVNEKDDYKLKQYSKDANKYVMMPAMARRRHVEVEKRMAALREFSNESE + LNKVEMKSKDIGVVTSGISYQYVKEAMPDASVLKIGMVHPIPEKLIADFAASVETLYV + VEELEPFFENQIKKMGIKVIGKEKLPVIGEFSANLVAEKLLAKKSDSQEASNQPVPVR + PPVMCPGCPHRGMFYVLKKMGLTVSGDIGCYTLGALPPNEAMDICVCMGASIGVAHGL + EKARGAEFRKKTVAVIGDSTFIHSGITGLIDVVYNKGNSTVIILDNSITGMTGHQQNP + TTGFTIKGEPTKQVDLELLCKSVGVDRVTVVDPFNVKEFERVVKAEIEVDEPSVIISQ + RPCALLKHVKYEGSHRIVQDKCKKCRMCMKIGCPAIVEKGDHLEINPALCVGCKLCTE + ICGFNAIERAGE" + gene 772916..773518 + /locus_tag="Ccel_0668" + CDS 772916..773518 + /locus_tag="Ccel_0668" + /inference="protein motif:PFAM:PF01558" + /note="PFAM: pyruvate ferredoxin/flavodoxin + oxidoreductase; + KEGG: cth:Cthe_0614 indolepyruvate oxidoreductase subunit + B" + /codon_start=1 + /transl_table=11 + /product="pyruvate ferredoxin/flavodoxin oxidoreductase" + /protein_id="ACL75048.1" + /db_xref="InterPro:IPR002869" + /db_xref="InterPro:IPR005479" + /translation="MLSKGQVNKVKKLNILIVGVGGQGTLLASRILGTVGLKLNFDVK + VSEVHGMSQRGGSVVTYVKYGEKVFSPLIEKGEADLIIAFEQLEALRWVDYLHKDGKM + IVNEQEIDPMPVIIGKAKYPGNILDTLKTSYSIYSLNALKIARECGTIKAVNIVLLGV + LAKLAGIDKNIFIEAINEVVPAKVLEVNMKAFEEGYNYHN" + gene 773644..774945 + /locus_tag="Ccel_0669" + CDS 773644..774945 + /locus_tag="Ccel_0669" + /inference="similar to AA sequence:KEGG:Cthe_0615" + /note="KEGG: cth:Cthe_0615 phenylacetate-CoA ligase" + /codon_start=1 + /transl_table=11 + /product="phenylacetate-CoA ligase" + /protein_id="ACL75049.1" + /translation="MSYWNRAYECMSREEMRKVQSERLIKTVNRVYENVPTYRKKMQE + KGMLPGDIKSVDDLKKLPFTYKQDLRDTYPYGLFAVPMSEIVRVHASSGTTGKKTVVG + YTQNDLDVWSEVIARTFTAAGAGKDSFLQISYGYGLFTGGLGAHYGGEKLGATVIPTS + SGNTKLQLSLMKDFGTTHLACTPSYALYLAEEMEELGIERSDLKLKAGIFGAEPWSES + MRQEIQDRLKIKAFDIYGLSEVIGPGVACECECQSGMHIPEDHFIPEIIDPETGEVLP + EGSEGEIVFTTITKEGLPLIRYRTRDLSSLNYATCECGRTEVRMNKVAGRTDDMLIIR + GVNVFPSQVESVLLSIGETAPHYMLVIDRKDNLDTLEIQVEITPSLFSDEVKKLEDVE + KKISKEINSTLGIGAKIKLVEPKTIQRSEGKAKRVIDKRVI" + gene 774993..775424 + /locus_tag="Ccel_0670" + CDS 774993..775424 + /locus_tag="Ccel_0670" + /inference="protein motif:PFAM:PF01842" + /note="PFAM: amino acid-binding ACT domain protein; + KEGG: cth:Cthe_0616 ACT domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="amino acid-binding ACT domain protein" + /protein_id="ACL75050.1" + /db_xref="InterPro:IPR002912" + /translation="MLVKQISVFLENKSGRLADVTRTLADNNINICAMSIADTTDFGI + LRLIVNKPEEAESALSEQQFTVSCTSVIAIGVEDKPGGLAKALDILRDNGISIEYMYA + FVGKTGNEAFVILRVENPETAIETLLKYGIEILPNDKIYCA" + gene complement(775471..776178) + /locus_tag="Ccel_0671" + CDS complement(775471..776178) + /locus_tag="Ccel_0671" + /inference="protein motif:PFAM:PF01648" + /note="PFAM: 4'-phosphopantetheinyl transferase; + KEGG: ckl:CKL_1736 4'-phosphopantetheinyl transferase" + /codon_start=1 + /transl_table=11 + /product="4'-phosphopantetheinyl transferase" + /protein_id="ACL75051.1" + /db_xref="InterPro:IPR004568" + /db_xref="InterPro:IPR008278" + /translation="MKGWGFLVNLYGIRVSACTDDDTIELLKKLISDERKAKMERFIF + KEDSIRCLLGEVISRYAISKHLNCKNVDISFKADSFSKPYLDNTNGSVFFNISHSGNW + VVCVLSSKPSGIDVEFIKQTDFGIAKRFFTREEYETLMNQPADYRSKYFFKLWTLKES + YIKADGRGLSLPLDSFSIKIDSDLISLSTQNKLTNCFFRQFEIDAAHIVSVCSEEDSF + PNEISYVSVQEILKSLC" + gene 776359..777066 + /locus_tag="Ccel_0672" + CDS 776359..777066 + /locus_tag="Ccel_0672" + /inference="protein motif:PFAM:PF00975" + /note="PFAM: Thioesterase; + KEGG: bcz:BCZK1713 thioesterase" + /codon_start=1 + /transl_table=11 + /product="Thioesterase" + /protein_id="ACL75052.1" + /db_xref="InterPro:IPR001031" + /translation="MKNTINLFCFPYAGGSSSVFSKLKRYADKNIKVVPVELAGRGQR + IGEPFYKNMNEAINDIYDKISSFTYEQPFAFFGHSMGSSMVFELSHKILQNQKKEPIH + LFISGRCPPINHKDDKKIHGLPDNKFIEEVYELGGTPKEVFENMELRRVFLPILRADY + KLVEEYQYFEKANKLSCDISVFNGKDDRMTNLDGMKGWGDYTSGKTNIFEFDGGHFFL + HNQMKEIMDIMNKTLHR" + gene complement(777149..778156) + /locus_tag="Ccel_0673" + CDS complement(777149..778156) + /locus_tag="Ccel_0673" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + KEGG: cpy:Cphy_0710 NAD-dependent epimerase/dehydratase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL75053.1" + /db_xref="InterPro:IPR001509" + /translation="MKALFIGGTGTISSAISSSLVEQGWELYLINRGNRSERIPAGAK + LLKADINDEALVSSLIKDHNFDVVADFIAFIPSQVERDIRLFSGKTKQYIFISSASAY + QKPLSDFRITESTPLANPYWEYSRNKIACEELLMAEYRKNGFPVTIVRPSHTYDDRSI + PLGVHGNNGSWQVIKRILENKPVIIHGDGSSLWTLTYNTDFAKGFIGLMCNIHALGEA + VHITSDESLTWNQIYQIIASALGVKLNAVHISTEYLAACSDYDFTGSLLGDKSNTVVF + DNSKIKRLVPGFNATVRFDQGVRLVLENINSHPELQLEDKDFDDWCDKVIANYINSMK + K" + gene 778431..779678 + /locus_tag="Ccel_0674" + CDS 778431..779678 + /locus_tag="Ccel_0674" + /inference="protein motif:TFAM:TIGR00200" + /note="TIGRFAM: molybdenum cofactor synthesis domain + protein; competence/damage-inducible protein CinA; + PFAM: molybdopterin binding domain; CinA domain protein; + KEGG: cth:Cthe_1052 competence/damage-inducible protein + CinA" + /codon_start=1 + /transl_table=11 + /product="competence/damage-inducible protein CinA" + /protein_id="ACL75054.1" + /db_xref="InterPro:IPR001453" + /db_xref="InterPro:IPR008135" + /db_xref="InterPro:IPR008136" + /translation="MRAEILAVGTELLLGQIANTNAQYISSKLPEAGVGVYYHSVVGD + NPDRLEDCLKLALKRCDIVITTGGLGPTQDDLTKETISRVCGKKLVLHQESLNDIRNY + FSSLGRQMTPNNEKQAYMPEGCIILKNTNGTAPGCIIETGGKIVVMLPGPPAEMKPMF + LDYVIPYFKNKGAYSIESVILRVFGIGESAMETKIMDLIDAQTNPTIATYAKEGEVSI + RVTASVLKGESADSILIPVVNEIKRRTGDNLYSDKDKTLDAVVAELLTKNNITIGTAE + SCTGGLISEKLTDIPGISQVFMGGAVTYSNEAKVEYLGVKEQTIKAHGAVSRETASEM + AEGIRKRLKTDIGISVTGIAGPGGGTAEKPVGLVYIGLSSESGTVTKELRLSGNRKKI + RTITALNVFDLIRRHILKLKIDL" + gene 779675..781324 + /locus_tag="Ccel_0675" + CDS 779675..781324 + /locus_tag="Ccel_0675" + /inference="protein motif:TFAM:TIGR01695" + /note="TIGRFAM: integral membrane protein MviN; + PFAM: multi antimicrobial extrusion protein MatE; + virulence factor MVIN family protein; + KEGG: cth:Cthe_1051 integral membrane protein MviN" + /codon_start=1 + /transl_table=11 + /product="integral membrane protein MviN" + /protein_id="ACL75055.1" + /db_xref="InterPro:IPR002528" + /db_xref="InterPro:IPR004268" + /translation="MIIDIHMKRAANLQSGGLNLSLNNKKLTGAAIIVMASLVVSRIT + GYLRTILINNLLTAAQSDSLLAAFRTTDLMYNLLIGGAISAALVPVLSGYIAKNEEED + GWKAIGTFVNVVFVTMIGVCILGVIFAPAVVSMTASGLTGEKRQLTIQLTRILFPSVG + FMMLAGITNGVLYSYKRFASAAFAPSVYNLGTALSILVLSRFGVRYVAFGVLASAIVY + FVMQISFAWPNLKYYRPKILWRNPGFKRLFKLAIPSLAASAVAQINILISLNFISMFR + NDGSITAYYNANDLWQLPYGIFAMGLGTAILPTLSEKLALKKVDEFKEILNNGFKTIL + YLIIPSSVAFIVLSQPVVSVVYKWSQVIGKERIVTAGSILLLFTAAMIAQSMLALLNR + AFYANNDTKTPLYIGTVSIALNFVFCYIFMKATDLGPAGMSLSYSIQSVVNMAIMMVI + ISKRMNGMGWKKLLDYSVKLLGAAAIMGITLFIMNRLIPVNFTKPFEIHSKLVEIAIL + GIEIVVGASVYFAFTMLFKIDEAVAVKNKFMGKIKRLVKKS" + gene 781418..782461 + /locus_tag="Ccel_0676" + CDS 781418..782461 + /locus_tag="Ccel_0676" + /inference="protein motif:TFAM:TIGR02012" + /note="KEGG: cth:Cthe_1050 RecA protein; + TIGRFAM: recA protein; + PFAM: RecA domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="recA protein" + /protein_id="ACL75056.1" + /db_xref="InterPro:IPR001553" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR013765" + /translation="MLEKRKALEMALGQIEKQFGKGAVMKLGENSHMNVEIIPTGSMS + LDLALGVGGVPRGRIVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYA + KKLGVDIENLIVSQPDTGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIDGEMGDS + HIGLQARLMSQALRKLAGVISKSRTTAIFINQLREKVGIMFGNPETTPGGRALKFYSS + VRLDVRRIEAIKQSNEVVGNRTRVKVVKNKVAPPFKEAEFDIVYGEGISREGSILDIA + VNMEIVNKSGAWFSYNSQRIGQGRENAKQYLKENPAMCSEIEKLVRSNFTVTAPQTEE + PEENEEVELDKIK" + gene 782581..783234 + /locus_tag="Ccel_0677" + CDS 782581..783234 + /locus_tag="Ccel_0677" + /inference="protein motif:PFAM:PF02631" + /note="PFAM: regulatory protein RecX; + KEGG: cth:Cthe_1049 regulatory protein RecX" + /codon_start=1 + /transl_table=11 + /product="regulatory protein RecX" + /protein_id="ACL75057.1" + /db_xref="InterPro:IPR003783" + /translation="MRITSIEKSDNNKSMARVCIDNGAEFVLPLKRIDALNLTIDKDI + EQESLDYILKYEVYAAAKNAAVKFLSLKLRTSFEVEEKLREMGYEESTINKVISDLAE + IEYINDYKYAAKYIAEKTKLKPKSIKLLAMELGHKGIPDEIINSTIEELNPDDEKVAL + ELLKRRYSKYNEFDEKLIKKMKSYLASRGFSYNQISKAISKFIPEDGYNADFNCDKY" + gene 783365..784705 + /locus_tag="Ccel_0678" + CDS 783365..784705 + /locus_tag="Ccel_0678" + /inference="protein motif:TFAM:TIGR01125" + /note="KEGG: cth:Cthe_0942 MiaB-like tRNA modifying enzyme + YliG; + TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like + tRNA modifying enzyme YliG; + PFAM: Radical SAM domain protein; Protein of unknown + function UPF0004; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="MiaB-like tRNA modifying enzyme YliG" + /protein_id="ACL75058.1" + /db_xref="InterPro:IPR002792" + /db_xref="InterPro:IPR005839" + /db_xref="InterPro:IPR005840" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013848" + /translation="MKKKIGIVSLGCPKNLVDSEIMLGMLSHSDYEIVNSKEDADVLI + VNTCGFIESAQQESINTILEMAEEKGRNCEVLIVTGCMAERYKEKILEQIPEVDAVLG + TGNYKEIAEVINLAYMGEKTVAYGKLDETDYLDEERVLSSSKHSVYLKISEGCDNRCT + YCIIPFLRGKYRSRKMESLVREAELLAGKGTKEIVIVAQDSTRYGIDLYGKKMLPELI + RKISDISGIEWVRLLYCYPEEIDDELINEIAINPKVCKYLDIPIQHASDRVLKQMGRR + GTISEIKQVLNKLREKVSGITIRTSLIVGFPGETEEDFEELMAFVKEFRLDRVGVFTY + SKEEGTAAAKMKNQIPKHIKIKRQKKILELQNVISREINQSRNGKVYKTIVDGIADDG + IFYYGRTYAEAPEIDGIIYFTSPEELSIGSFINVRILNTEDYDLIGEVINEFTE" + gene 784689..785309 + /locus_tag="Ccel_0679" + CDS 784689..785309 + /locus_tag="Ccel_0679" + /inference="protein motif:TFAM:TIGR00560" + /note="TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate + 3-phosphatidyltransferase; + PFAM: CDP-alcohol phosphatidyltransferase; + KEGG: cth:Cthe_0941 + CDP-diacylglycerol--glycerol-3-phosphate + 3-phosphatidyltransferase" + /codon_start=1 + /transl_table=11 + /product="CDP-diacylglycerol/glycerol-3-phosphate + 3-phosphatidyltransferase" + /protein_id="ACL75059.1" + /db_xref="InterPro:IPR000462" + /db_xref="InterPro:IPR004570" + /translation="MNLPNKITISRIFLVPLFMIFVIPIPDATVNFPLLSFLKDEMLS + INVFINNYGSYVAAVLFILAASTDGVDGYIARKHKLVTSFGKFLDPIADKLLITAALI + ALVQQQVVTGWAAMIIISRELLVTGLRLVAAAEGQVIAANKSGKIKMIFQTVAVSVCL + LKNWPFSIFTDMPIDSYLMLIAVLVTIYSGIDFFAKNLKIFKSGGM" + gene 785585..786169 + /locus_tag="Ccel_0680" + CDS 785585..786169 + /locus_tag="Ccel_0680" + /inference="protein motif:PFAM:PF08220" + /note="PFAM: regulatory protein DeoR; + KEGG: cth:Cthe_0938 fatty acid biosynthesis + transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="regulatory protein DeoR" + /protein_id="ACL75060.1" + /db_xref="InterPro:IPR001034" + /translation="MSRSSSHKQQRQKTLLEKIKYDPFLTDEELADYFKVSVPTIRLD + RLELAIPELRERIKNVAESNQEKLKSLESKEFIGELIDLQLGQNAISLMETKSTMAFE + KTHIVRGHYIYSLAETLAIAVIDSQVALVGVANIKYKIPVYSGARIIAKAQVKKSKGN + RFIVWVKIYEKNVEVFRGKFILVSLNENKIKEKI" + gene 786226..787254 + /locus_tag="Ccel_0681" + CDS 786226..787254 + /locus_tag="Ccel_0681" + /inference="protein motif:TFAM:TIGR00182" + /note="TIGRFAM: fatty acid/phospholipid synthesis protein + PlsX; + PFAM: fatty acid synthesis plsX protein; + KEGG: cth:Cthe_0937 phosphate:acyl-[acyl carrier protein] + acyltransferase" + /codon_start=1 + /transl_table=11 + /product="fatty acid/phospholipid synthesis protein PlsX" + /protein_id="ACL75061.1" + /db_xref="InterPro:IPR003664" + /translation="MINIIVDAMGGDNAPDSIIDGCVEAINIKEGFNITLVGKSEIIE + SNLSKKEFNRDRISIVNATEVITGDDTPTRAIRSKKDSSIVVGMKLLKENKGDAFISA + GNTGAIMTGALLIVGRMKGVDRPSLPALVPSKKDMVLIIDAGMNTVCRPINYLQFGIM + GSIYMRLIYKKESPKVGLLNVGSEDAKGNSTLKQAFSILSSSQINFVGNTEGNNIPGG + DVDVAVCDGYAGNVALKLYEGAGSLFLGELKKIFTSNIVTKLCYLMLKPFFKSFKSKF + DPDELAGAPVLGVNGLVIKSHGSSKAKTIRYAILNRAIPLIENGVVNEIKEQFKNMEV + DSSDDKID" + gene 787238..788236 + /locus_tag="Ccel_0682" + CDS 787238..788236 + /locus_tag="Ccel_0682" + /inference="protein motif:TFAM:TIGR00747" + /note="TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase + III; + PFAM: chalcone and stilbene synthase domain protein; + 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain + protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase + III; + KEGG: cth:Cthe_0936 3-oxoacyl-[acyl-carrier-protein] + synthase III" + /codon_start=1 + /transl_table=11 + /product="3-oxoacyl-(acyl-carrier-protein) synthase III" + /protein_id="ACL75062.1" + /db_xref="InterPro:IPR004655" + /db_xref="InterPro:IPR012328" + /db_xref="InterPro:IPR013747" + /db_xref="InterPro:IPR013751" + /translation="MTKSTKRVGIIGTGSFVPEKILTNNDLEKIVDTSDEWIIKRTGI + SERRILDDETPTYTMGIEAAKRALEDANLNAEDIDLIIVSTETPDFMSPSMACIIQGA + IGAVNATAFDINAACTGFIYSLAVAQQFIANGVYKHALLIGCEGLSRIVDWKDRNTCI + LFGDASGAVVLGEVEEGYGILDTFLGSNGAEGMNITIPNLYLSQEEKEKRVNGKYNSI + WMDGKEVFKFAVKAMSAATMHVLDKLNMDINELDFIFPHQANTRIIDGAIKKLGITDD + KIHYIINKYGNISSASIPVAMDEAKQEGKLKRGDKIVLVAFGGGLTWGSIAVKWFK" + gene 788271..789203 + /locus_tag="Ccel_0683" + CDS 788271..789203 + /locus_tag="Ccel_0683" + /inference="protein motif:TFAM:TIGR00128" + /note="TIGRFAM: malonyl CoA-acyl carrier protein + transacylase; + PFAM: Acyl transferase; + KEGG: cth:Cthe_0935 [acyl-carrier-protein] + S-malonyltransferase" + /codon_start=1 + /transl_table=11 + /product="malonyl CoA-acyl carrier protein transacylase" + /protein_id="ACL75063.1" + /db_xref="InterPro:IPR004410" + /db_xref="InterPro:IPR014043" + /translation="MGKVAFLFPGQGAQYVGMGKEIADEYKSASKVFDEATEALGFDV + REMIFNGDDETLKITENTQPTIVTTSIACMQPLLEKGIRPDFVAGLSLGEYAAHVTAG + TISFKDAVALVKKRGKYMQEAVPIGVGAMAAIIGLENNDVIECCKEASQVGIVEPANF + NCPGQIVVAGEKAAVEKAAELCKAKGAKRAMLLPVSAPFHCSLLKPAGEKLAVELDMV + SLNDIKIPVVTNVTGETVTNKDFVKDLLVKQVSTSVLLEKSIRTMLDAGVDTFVEIGP + GKVLSGFVKKIDRDAKVLNVENLETLNKALEVLV" + gene 789242..789979 + /locus_tag="Ccel_0684" + CDS 789242..789979 + /locus_tag="Ccel_0684" + /inference="protein motif:TFAM:TIGR01830" + /note="TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) + reductase; + PFAM: NAD-dependent epimerase/dehydratase; short-chain + dehydrogenase/reductase SDR; Male sterility domain; KR + domain protein; + KEGG: cth:Cthe_0934 3-oxoacyl-[acyl-carrier-protein] + reductase" + /codon_start=1 + /transl_table=11 + /product="3-oxoacyl-(acyl-carrier-protein) reductase" + /protein_id="ACL75064.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /db_xref="InterPro:IPR011284" + /db_xref="InterPro:IPR013120" + /db_xref="InterPro:IPR013968" + /translation="MQFKGQTAVITGSSRGIGKAIAEKLGKLGANVVLNGTTDKVLDT + AKELEAMGIKVTAVVGDIRHAEDVKTLMNTAVNTFGGIDILINNAGITKDKPMAMMSE + DDWDTVLDINLKGAFLCTKAAAKLMLKKKYGRIVNISSVAGNYGNPGQANYSASKAGL + IGLTKTTAKEFAPRGIICNVVCPGAIVSDMTEILPDDLKKKYIEKIALGRFGTPEEVA + NVVAFFASEEAGYVTGQVIDIDGGLVM" + gene 790098..790325 + /locus_tag="Ccel_0685" + CDS 790098..790325 + /locus_tag="Ccel_0685" + /inference="protein motif:TFAM:TIGR00517" + /note="TIGRFAM: acyl carrier protein; + PFAM: phosphopantetheine-binding; + KEGG: cth:Cthe_0933 acyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="acyl carrier protein" + /protein_id="ACL75065.1" + /db_xref="InterPro:IPR003231" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /translation="MVFDKVKKLVVEQLGVEEGDITMESSFIDDLGADSLDIVELIMA + LEEEFGLEIPDSEAEKITTVKDVVEYINSNT" + gene 790464..791699 + /locus_tag="Ccel_0686" + CDS 790464..791699 + /locus_tag="Ccel_0686" + /inference="protein motif:TFAM:TIGR03150" + /note="TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase + 2; + PFAM: Beta-ketoacyl synthase; + KEGG: cth:Cthe_0932 3-oxoacyl-[acyl-carrier-protein] + synthase II" + /codon_start=1 + /transl_table=11 + /product="3-oxoacyl-(acyl-carrier-protein) synthase 2" + /protein_id="ACL75066.1" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /db_xref="InterPro:IPR017568" + /translation="MKKRVVITGAGVVSSLGFGLDQFWGSIKEGKNGISEMTGIDVSE + MSTKVGAEIKDFDPTLFIDKKEARRMDRYNQFAMAASKMAVENAKLDLDSLNKDKCGV + IIGSGIGGIGTFEEQHSVLLNKGPGRVSPFFIPMMISNMASGRVAIQYGFMGFNECVV + TACATSNNAIGDAFKVIQRGDADLMLTGGAEASLTAMSFAGFCNMGAMSKNPDPATAS + RPFDKDRDGFVMGEGAGILVLEELEHALNRGANILAEVVGYGCTCDAYHITAPHPEGL + GGIKSMQMAINDAGIKPEEVNYVNAHGTSTPLNDPGEVHVVKTVFGSHADNLAMSSTK + SMTGHLLGAAGAVEAIITAMAIHDSFLPPTINVQNQDPECDIDCVPNKGRQADINYAL + SNALGFGGHNATICLKKYE" + gene 791833..792543 + /locus_tag="Ccel_0687" + CDS 791833..792543 + /locus_tag="Ccel_0687" + /inference="protein motif:PFAM:PF00636" + /note="PFAM: ribonuclease III; double-stranded RNA binding + domain protein; + KEGG: cdf:CD1248 putative ribonuclease III" + /codon_start=1 + /transl_table=11 + /product="ribonuclease III" + /protein_id="ACL75067.1" + /db_xref="InterPro:IPR000999" + /db_xref="InterPro:IPR001159" + /db_xref="InterPro:IPR011907" + /translation="MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRK + LKYNERLEFLGDSVLGLTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLG + KYLLLGKGEELSGGREKISLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIE + GKLFYDYKTQLQELVQQNGEQQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSK + KEAEQNAAKNALNNLKTN" + gene 792563..793573 + /locus_tag="Ccel_0688" + CDS 792563..793573 + /locus_tag="Ccel_0688" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cth:Cthe_0930 radical SAM family protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75068.1" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKKHIVIPIFVPHKGCPFDCIFCNQKIISGQIHESSEEEIRSTI + ESHLETSGDAYVEIGFYGGSFTGISLSEQEWYLKIGYSYIKDGKVKQIRLSTRPDYIN + PTILDLLERYGVKTIELGVQSLDYDVLKCTNRGHGIEEVLNAAMMIKDRGFSLGIQTM + IGLPGDTRAKAVATAKKVVELSPNIVRIYPTLVIKNTFLQKLYYDGRYQPLTIEEAVD + ISAELLDIYEKHRINVIRIGLQPTDNISESGEIVAGPFHPAFRQLVESRLALTRMRQY + IIDYGLDKLSDIVIECNPKLVSNIIGQKRMNIHTLKNEFNFKNIRIMEKLNVEKFLIM + AT" + gene 793708..793968 + /locus_tag="Ccel_0689" + CDS 793708..793968 + /locus_tag="Ccel_0689" + /inference="protein motif:PFAM:PF04232" + /note="PFAM: Stage V sporulation protein S; + KEGG: cac:CAC1750 SpoVS-related protein" + /codon_start=1 + /transl_table=11 + /product="Stage V sporulation protein S" + /protein_id="ACL75069.1" + /db_xref="InterPro:IPR007347" + /translation="MEVLKVSANSQPKSVAGALAAVLRDNNYAEIQAVGAGAVNQAVK + AIAITRGFVAPNGIDLVAVPAFAEVNIDGEERTAIKFYIQPR" + gene complement(794015..794686) + /locus_tag="Ccel_0690" + CDS complement(794015..794686) + /locus_tag="Ccel_0690" + /inference="protein motif:PFAM:PF00081" + /note="PFAM: manganese and iron superoxide dismutase; + KEGG: cth:Cthe_3008 superoxide dismutase" + /codon_start=1 + /transl_table=11 + /product="manganese and iron superoxide dismutase" + /protein_id="ACL75070.1" + /db_xref="InterPro:IPR001189" + /translation="MNYNYAPIGQHQLPPLPYSYNALEPVISQRTLRIHHDKHHKAYV + DGLNKTEVSLSDVRKRNDYEYIKYWENELAFNGSGHILHSIFWTVMAPPGMGGNPGTQ + TINHINNYFGNFSAFREQFTSAAEKVEGSGWAILIWQPAWGRLEILQAEKHQNRTQWG + GIPVLVCDVWEHAYYLDYQNERKKFIDSWWGIVNWNEVENRLILASNGQLPLTTINSM + RFKMS" + gene complement(794807..795376) + /locus_tag="Ccel_0691" + CDS complement(794807..795376) + /locus_tag="Ccel_0691" + /inference="protein motif:PFAM:PF07875" + /note="PFAM: Coat F domain protein; + KEGG: cac:CAC1335 spore coat protein F (cotf) related + protein" + /codon_start=1 + /transl_table=11 + /product="Coat F domain protein" + /protein_id="ACL75071.1" + /db_xref="InterPro:IPR012851" + /translation="MQLASHEVNDLRELTTSCVNSITNMALFLNSVQDNELKSLIQKH + LPYHIKDYNTKVEYLSRTSGAKTGLPIPPITNIIQNYTNSETNTLPVTPRTDLQELND + REIATSYLLTLKRAGREYAWAAMEASNPEIRMFLEDAFKMSSHHAYDIWQWMVQKGYY + PLEAAPAETMEKLGNMYNTVEQGNLETIH" + gene complement(795826..797109) + /locus_tag="Ccel_0692" + /pseudo + gene complement(797379..797792) + /locus_tag="Ccel_0693" + CDS complement(797379..797792) + /locus_tag="Ccel_0693" + /inference="similar to AA sequence:KEGG:Cthe_3195" + /note="KEGG: cth:Cthe_3195 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75072.1" + /translation="MQDWSCKNYMQMMNMPQQYSPMMEMPHEHLQNMFPRCYVIIMPE + VERMCDRMCAQHGPMFNPSRQMLESMVDDIDNRVGADVDMDYQDFDQCDDRQFAFGGL + GGGRRRFRRDLITILLLRSLFDRRRPPFHPWGFGY" + gene 798023..798787 + /locus_tag="Ccel_0694" + CDS 798023..798787 + /locus_tag="Ccel_0694" + /inference="similar to AA sequence:KEGG:MTH933" + /note="KEGG: mth:MTH933 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75073.1" + /translation="MIHEELYKTIFTRRSIRKYDMTPLPEQKLQEIKNFADNTKKLVP + GIKCEICFLDKENVKNIFPIKAPHYISIYSEKKEGYLMNVGFMLQQVDLFLSANNLVS + CWLGIAKPSKEVPTSNNDMEFVIMLAFGNTHEKLHRADTSEFKRKGISEITSITGADE + LLEAARLAPSASNSQPWYFSGDQNEIIISREKLSFLKAPIFNRINQIDMGIALCHLWL + SIEHQGKTAYFDYTKSNAPKGYEFMLKVKVGGGKSC" + gene 798781..799971 + /locus_tag="Ccel_0695" + CDS 798781..799971 + /locus_tag="Ccel_0695" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: mba:Mbar_A2639 aldo/keto reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL75074.1" + /db_xref="InterPro:IPR001395" + /db_xref="InterPro:IPR017900" + /translation="MLTRINQKNGEELSILGFGCMRFPTRAGGIDEPRAIRMIRYAIE + KGINYFDTAYIYHGGKSESLLGKALAGGFREKVKIATKLPSFMVKNLDNAKKIFNTQL + ERLQTDYIDYYLLHMLTDKAGFDRLADMGVLTWMEELKEKGTIKNIGFSFHGAKIEFE + QILKAYPWEFCQIQYNYMDENNQATKDGLLLANDMGIPVIVMEPLRGGKLVTNLPEDV + IKAFAECDRDRSPAEWALRWIWNHPQVNVVLSGMSDEAQVEDNIRIASDSHANSLTDE + ELGVFDNVKRILHERTKIPCTACGYCMPCPAGVDIPGCFSHYNDKYLIKDKGTRFRYY + RNLGAVAAQPSYASQCKDCGKCESHCPQKISIRSELKTVSKEMESVFYKAGIAIARKF + MKIK" + gene 800102..803674 + /locus_tag="Ccel_0696" + CDS 800102..803674 + /locus_tag="Ccel_0696" + /inference="protein motif:TFAM:TIGR02168" + /note="TIGRFAM: chromosome segregation protein SMC; + PFAM: SMC domain protein; SMCs flexible hinge domain + protein; + KEGG: cth:Cthe_0927 condensin subunit Smc" + /codon_start=1 + /transl_table=11 + /product="chromosome segregation protein SMC" + /protein_id="ACL75075.1" + /db_xref="InterPro:IPR003395" + /db_xref="InterPro:IPR010935" + /db_xref="InterPro:IPR011890" + /translation="MYLRKLEIQGFKSFADKISLDFNNGITAVVGPNGSGKSNISDAV + RWVLGEQSAKTLRGSKMEDIIFAGTEHRKPVGFAEVSLTIDNTDNYLPVSYSEVTVTR + RVYRSGESEYYINKTSCRLKDIHELFLDTGIGRDGYSIIGQGRVDEILSTKSEDRRLI + FEEASGIMKYKVRKQDAERKLQLTEQNLVRINDIINELESQLEPLREQSEAAKKYLTL + RESLKDMEINVYLNNIDRLKEKIKEYETQFKDIRDNIEAEERRLRNITAQNQQKTELL + KNLDERITEAREKFYVIEGNLEKNSSEVKLKNEKINSLGENIVRLSEETSEINSKLEI + LSTEEKSRQGKIEYLNGQYNEFSKKLEKYQSELDGILSTLGENERNIEMLKAGIMDKL + DIQSDKRTQINNIKNHIENIRKRQNSIGTEIYSLKLEKDKDNMKKEDLTESIRNTVTL + IKRSREKINELNNEKTELKSTLSELEKQHGNVKTDIQVKTSRQKMLKDMENSMEGYSR + SVKEIMTACRRSSDLGKGIHGTVAQLVEVDKKYETAIEMTLGSALQNIVTSSEGDAKK + AIEFLKRNKVGRATFLPITSVKGKRLDDSTLRRLEDCQGFCGVASNLVNSDPSYAGIV + LNLLGRVIVVENLDSGINIARKFGYSFRIVTLEGDILSTSGSMSGGSTDHRSSGILNR + SREISELETIIEGLRKDEIKYNTKINDVRQMLEEIDSEFDEHSNKLRDSELIKTRDEN + HLQMIEDNIKKTEAKIGMLINEKEQMVKQEQETLLEQQKYESELEGIETDISQTKAII + AEHQEKFKADQSVRDELHQEITDFKISVNSITESIQSVKENLDRIQGERESLTKSYTR + KQNEINKASAEIDLLKQEIGGLENSSRNLQDEKTGKTLEIDRLVEEKKVLEEESIDFI + EKLNTTNKTIHLLHEEYNRIDIKKAKAEAEMKSIQDRMWDEYELTYSNAVELKKEIGN + ISEAQKSISEYRAQIKALGPVNVSSIDEYIRTKERFEFMSVQKNDMEQAKEKLHKIIY + EMVQVMKKQFVEQFKLINENFGIVYKELFGGGRAELIISDQDNVLESGIEIEVQPPGK + KLQNMMLLSGGERAFTAIALLFAILRLKPTPFCLLDEIEAALDDANVYRFGEYLKKYS + KNTQFIMVTHRKGTMESADTMYGVTMQEHGVSKVVSMKMGELAS" + gene 803754..804662 + /locus_tag="Ccel_0697" + CDS 803754..804662 + /locus_tag="Ccel_0697" + /inference="protein motif:TFAM:TIGR00064" + /note="KEGG: cth:Cthe_0926 signal recognition + particle-docking protein FtsY; + TIGRFAM: signal recognition particle-docking protein FtsY; + PFAM: GTP-binding signal recognition particle SRP54 G- + domain; GTP-binding signal recognition particle SRP54 + helical bundle; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="signal recognition particle-docking protein + FtsY" + /protein_id="ACL75076.1" + /db_xref="InterPro:IPR000897" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004390" + /db_xref="InterPro:IPR013822" + /translation="MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFEELEEIL + ITSDIGIDTTMRVIEDLKEKVKERKIIDPKDVKGLLKESLKEILEKGGSEMKIGTKPS + VIIVIGVNGVGKTTSIGKIANLYKNQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTDII + MHKEGSDPAAVIFDAVQAAKSRNADLLICDTAGRLHTKKNLMEELKKISRVLDRELPG + ADRETLLVLDATTGQNAISQAKTFSETSDITGIVLTKLDGTAKGGIVIAIKSELDIPV + KLIGVGEQLDDLQKFDAEEFVEALFS" + gene 804691..807528 + /locus_tag="Ccel_0698" + CDS 804691..807528 + /locus_tag="Ccel_0698" + /inference="protein motif:PFAM:PF03699" + /note="PFAM: protein of unknown function UPF0182; + KEGG: csc:Csac_0864 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0182" + /protein_id="ACL75077.1" + /db_xref="InterPro:IPR000215" + /db_xref="InterPro:IPR005372" + /translation="MEEVYDYYKEKDKKQKNGKGYKGKIAALITLAIIVVFAIIGSSI + YMELIQLKELNPNADYTTVYTKNLLYKTIFFIISFVIITLFVFITNKVTGNNLKKYFK + NNNLEQRRLVNAPVAFVIGILGAFITKEFFFNKALLFLNSANFGIKDPQFGQDIGYYM + FQRPFYMSLFNFISNLWLFLVFYTAVYYLIVLMTALNNTLSTKDLKDKTILRHNLINI + AVFFVLKTISFKFQRESLLYTNFTNKDITGAGYVDTNIWIKYYTVAPVIVLVIVLLAG + FFMWKGKLKKSAIVIAAFPTIFILLTLVSSIIQNAIVGPNEIEFEDKYLKNNMTETRA + AFGLDKIQPYDFNKIEELTPEIINNNRNTVDNIRVVDYIPTLNSNKQLQSNTNFYTFH + NGDILNYTVNGKEIPVLISAREINTDYLRNQNFVNKTFKYTHGYGVVVNPINKLTAQG + QVEFLISGLKMDTVDQVNLKVTEPRIYYGQLTNNYVIVNPKSAKKLTEIDYDGTTVSY + FDETGNKYEKIKMNLLNRILFSIKYADTNLLVSSNISSDSKILLNRNVVERAQKGIPF + LKVDSDPALNITADGKLVWVLDAYSISNNYPYSQYYYTQSEDNDLQSLNGINYIRNSV + KVTVDAYDGTVKYYIIDNEDPIIKAYQSVYPGLFTKDEFPADLASHIRYPETLFKLQT + EVLKKYHLDPKKEDNISTFYTGQDEWNIAKYPDQNNESGAKDIDAYYNMVKLPGDIGK + KEELILMRPFTPSGEKHNMVSWLAVRNDMENYGKMILFNFPKNTNILGPDQFEVNINQ + ISEISEDMTLWGQGGSKVFKGSLLVIPIENSILYVEPIYIQSNSASSIPQVKRVVVGY + QQGADFKHGIGDNLDSAIDDLFKGSVKPSGEKTQTINPENQNDEGHEAVTPPDKSQSI + DQKKLDELQQKLDQLMKQSQEINDLLKSLRK" + gene 807801..809684 + /locus_tag="Ccel_0699" + CDS 807801..809684 + /locus_tag="Ccel_0699" + /inference="similar to AA sequence:KEGG:Csac_0715" + /note="KEGG: csc:Csac_0715 amino acid transporter-like + protein" + /codon_start=1 + /transl_table=11 + /product="amino acid transporter-like protein" + /protein_id="ACL75078.1" + /translation="MFKKIRRILVGKPLKNEALQDQKMGVLWGLPILSSDAISSVAYA + GQEVLMVLIPAVGILAFRQLSYISIAIICLLMILMLSYRQVIDSYPNGGGAYVVAKEN + LGVLAGVTAGAALSVDYVMTVAVSISSGVEQFTTAFKVFKPYSVVIAVTMVILLMIGN + LRGIRESSRMFGIPAYAFIIGMVVMIVAGFAKVSGGYVPPPAQNMPDVVKPLTLMLVL + TAFSNGCAALTGVEAVSNAVPNFKSPSTKYAKRVLFLLSMVILVLFGGSSIIANIYHV + NPSNGNAMLIMIAGEIFHNTKFDFMFYYITATTFIILVFAANTAYSGFPMLISIMAKE + GYAPKQLSMRGDRLSYDNGIILLSVLASILMIVFKADVSKLIGLYAIGVFISFTLSQT + GMFIKWRNNKGKGWMHRAIINGTGAVVSGIVVVIIAITKFKEGAWLVVILIPILILLI + FKVKKHYEAVMRQLRLKPEEIANFDINKAVYRNRVIVPIESVNRSSLRALRYAKTISD + NITAFSVVIDEADAKKIKEKYNSLNMDDIPLVVKYSPFRKVVEPMLKFIESAEYDYQN + GDMITVILPQFAVKKWWHKFLHNNTRYSVEKELLKHKHIVVSVMPLQLRDDDFVLNNH + KYD" + gene 809744..810721 + /locus_tag="Ccel_0700" + CDS 809744..810721 + /locus_tag="Ccel_0700" + /inference="protein motif:PFAM:PF00480" + /note="PFAM: ROK family protein; + KEGG: cth:Cthe_2938 glucokinase" + /codon_start=1 + /transl_table=11 + /product="ROK family protein" + /protein_id="ACL75079.1" + /db_xref="InterPro:IPR000600" + /translation="MKYSIGVELGVKNIVAGILDKNGKLIRRDAVPTNKNKDFKEIIK + DLCSLIKKITADEDIELRSVKYIGVGCPGVTDNKHGVILKNYSLNFTNANVRDEIQKY + LKIPVFIENDANCVAIAEYLLGAAYGTESSLIIKVGVGIGGGIIIDGSIYNGFNFGGT + EFGHMVIDYKGRSCSCGRKGCWEQYVSGSALIDQTRQLASENPDSILGNMVKNNVAQI + TELTIFEAAKAGDEKAKKYCSEFIDYFAEGLTNIVNILMPEVVIIAGPISKLGNTIVK + PLVELLKERIYSKELNLPEFKMAEMGNAGIIVGAAMLGAFKDERLDDLV" + gene 810748..810972 + /locus_tag="Ccel_0701" + CDS 810748..810972 + /locus_tag="Ccel_0701" + /inference="similar to AA sequence:KEGG:Amet_3099" + /note="KEGG: amt:Amet_3099 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75080.1" + /translation="MAEIKFKITENIGNLSESGRGWYKELNLVSWNDRDPKYDIRDWS + PDHEKMGKGVTMTKEELIELKKLLNSMEDI" + gene 811410..813719 + /locus_tag="Ccel_0702" + CDS 811410..813719 + /locus_tag="Ccel_0702" + /inference="protein motif:TFAM:TIGR02487" + /note="TIGRFAM: anaerobic ribonucleoside-triphosphate + reductase; + PFAM: ATP-cone domain protein; + KEGG: dsy:DSY0397 anaerobic ribonucleoside triphosphate + reductase" + /codon_start=1 + /transl_table=11 + /product="anaerobic ribonucleoside-triphosphate reductase" + /protein_id="ACL75081.1" + /db_xref="InterPro:IPR005144" + /db_xref="InterPro:IPR012833" + /translation="MITKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAE + SVVDFIESSLDRKVPSVEEIQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLM + KVYEELTFKDAKDNDLKRENANIDSDTAMGTMLKYGSEGAKQFYEMYVLKPEHARAHN + NADIHIHDLDFLTLTTTCCQIDIQKLFKGGFSTGHGYLREPNDISSYSALACIAIQSN + QNDQHGGQSIPNFDYGMSMGVAKTFEKGYKQNLKKALELLLENDFTNEISQACEEIYK + EIGIKPALNRMEPYTKAEKKILLKYISDETLLEKAQSFAVKKTEEETDRITYQAMEAF + VHNLNTMHSRAGAQTPFSSINYGTDTSPEGRLVIKNLLLATEEGLGNGETPIFPIHIF + KVKDGINYKESDPNYDLFKLACRVSAKRLFPNFSFIDAPYNLRHYKEGEPNTEIAYMG + CRTRVIGNSYDPEREVIFGRGNLSFTTVNLPRIALRSNKNLNIFFEELDKKIDLVIDQ + LYERYLIQAKKKVKNFPFLMGQGVWIDSDNLDWEDEVGEVLKHGTLTMGFIGLAECLK + ALIGKHHGESVQAQNLGLEIVGYMRKRMDEASEKYSMNFSLIATPAEGTSGRFVKYDK + NVFGNIEGVTDKEYYTNSFHVPVYYKINAIDKITTEAPYHELTNGGHITYVEVDGDPL + NNLEAFEKIIRAMKESGIGYGSINHPVDRDPVCGYTGIIGDTCPRCGREEADRHFQRI + RRITGYLVGTLERFNDAKKAEVRDRVKHM" + gene 813788..814297 + /locus_tag="Ccel_0703" + CDS 813788..814297 + /locus_tag="Ccel_0703" + /inference="protein motif:TFAM:TIGR02491" + /note="TIGRFAM: anaerobic ribonucleoside-triphosphate + reductase activating protein; + PFAM: Radical SAM domain protein; + KEGG: aoe:Clos_1145 anaerobic ribonucleoside-triphosphate + reductase activating protein" + /codon_start=1 + /transl_table=11 + /product="anaerobic ribonucleoside-triphosphate reductase + activating protein" + /protein_id="ACL75082.1" + /db_xref="InterPro:IPR001989" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR012837" + /translation="MDKQIRISGIINESIVDGPGIRMVIFAQGCRHNCKGCHNPHTHP + MDGGELVEIDKIVEDIRKNPLLDGVTFSGGEPFEQAKAFAALAKRINKLGLNVMAYSG + YTFEQLIDDSKERKERMELLNNIKILVDGPFIQEQKDLLLKFRGSTNQRIIDVVKSLA + SGKIKLAEI" + gene 814396..816282 + /locus_tag="Ccel_0704" + CDS 814396..816282 + /locus_tag="Ccel_0704" + /inference="protein motif:PFAM:PF00884" + /note="PFAM: sulfatase; + KEGG: lsa:LSA1585 putative teichoic acid/polysaccharide + phosphoglycerol transferase" + /codon_start=1 + /transl_table=11 + /product="sulfatase" + /protein_id="ACL75083.1" + /db_xref="InterPro:IPR000917" + /translation="MVNLFTVKPQKRIEWGYVCTAILIAVFTVFLTITGFLLQPNDFH + TIASNVLRHPTLFILNSFPVFAGILFFYLVFNNVFFSAALVSTVFHAASLVNRFKIIF + RDDPFVPQDVFLGAEAANIMSDTKMKLDYTLIIAILLFSLVMLILGVFIKFKKVKLPL + KVAGCLAIVGIAILSNTFVYSSREIYDRMPSKSKAYVAGVFNDVGFNYCFLYNLSAYK + MEVPENYSKSAAGKLVKKYTKSKAEPKVRANVIIVMNEAFSDISREKVFNFSPEDDPL + RYFKNIGQENNSITGQVVVPNFGGGTANTEFDVMTGMQTLNLNTVPTSAFRLVHRNIK + SIAGVLGSDSYKKYFMHPGDSWFYNRANVYRFLGVEEQIFINQFKKPEDLKGTLISDK + AAGEKIISLYEKNMASGKNPVFNYNVTIQNHMPYTANKYYGLKIKEVPTDKKLSFQAK + TLLANYFEGVRDGDKLLKTLTDYFRERQEPVILVFFGDHKPSLGDSYLAYREAGIDIN + ESGTIEQAMKSREVPYIIWANKSAGNILDFPNVVRNLDLPKDNTISANYLGPIILQLM + GYEGYDPYFDFLNELRKELPVITRYNFKTNSGYTDKLSEKQQAMVNDFRIWQYYRMTS + DKAD" + gene complement(816354..817199) + /locus_tag="Ccel_0705" + CDS complement(816354..817199) + /locus_tag="Ccel_0705" + /inference="similar to AA sequence:KEGG:BDI_2301" + /note="KEGG: pdi:BDI_2301 pantothenate kinase" + /codon_start=1 + /transl_table=11 + /product="pantothenate kinase" + /protein_id="ACL75084.1" + /translation="MGKIIGIDLGGSTTKIVGFDGKEMISPFFVRANDPIASVYGAFG + KFLSINSLKIENIERIMVTGVGSSFVDSRLFGIPTAKVDEFMAIGMGGLFLSNLKKAI + IVSMGTGTALVKAENNTAVHLGGTGIGGGTLLGLSNRILNVRHFEELIETAVGGDLSN + VDLTIGDISREAMETLPSETTASNFGKISDLVTKADLALGIINLVFQTIGMVAVFNTR + IDNIKDVVLTGNLTNVPQAQKIFEQLSSLYNVNFQTPQYAEYATAVGAAICFTTKEIS + MREVL" + gene complement(817223..818875) + /locus_tag="Ccel_0706" + CDS complement(817223..818875) + /locus_tag="Ccel_0706" + /inference="protein motif:TFAM:TIGR00728" + /note="TIGRFAM: oligopeptide transporters, OPT + superfamily; + PFAM: Oligopeptide transporter OPT superfamily protein; + KEGG: fma:FMG_1322 putative oligopeptide transporter" + /codon_start=1 + /transl_table=11 + /product="oligopeptide transporters, OPT superfamily" + /protein_id="ACL75085.1" + /db_xref="InterPro:IPR001484" + /db_xref="InterPro:IPR004813" + /translation="MNNRERNFLGVQQLSLRSLIIGSLGSCVITASSMYVALRMSALP + WPTIFVAVLSMGLLKLFGKTTNNEINITQTAMSAGAMVAGGLAFTLPGLWIMGIWKGS + ANFSSNYVKVLAIAIAGMLLGSVTSYILRYRFIVKNALPFPIGQAAAETIKAGDEGGK + KSIVLFGTMLVSTIYTFLRDQARLVPEAFMFNKNSTLGIWNSPMAIGMGYILGTLYTG + VWFLGALFSYAFVIPFGPRLGLFPSKEAASSFTISTGIGLLVGTGLGILLGIIYSYIK + KLKNRQKDISSEKAETYKNKKSIFNLSRILIVSGSVTAFFFTVVAGIPVLPSVLMILG + IYIVSLMAATITGQTGINPMEIFGIIILLAVRIFVNIDAMDALMIAACTAIASGFSGD + LFNDYKAGEVLGTNPKAQLISQIIGGVVGTVVASLALFAIINQFGEVGSKTSLPAAQA + VGVSAMINGIGNPVVFGIAVGVGAILYLFGLPTATLGIGVFLPFTISSAVFLGGVIRF + IADRRKSKSSDDDKGTVAASGLLGGEGITGVGIALVKMFTRG" + gene 819322..820098 + /locus_tag="Ccel_0707" + CDS 819322..820098 + /locus_tag="Ccel_0707" + /inference="protein motif:PFAM:PF01936" + /note="PFAM: protein of unknown function DUF88; + KEGG: fjo:Fjoh_2410 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF88" + /protein_id="ACL75086.1" + /db_xref="InterPro:IPR002790" + /translation="MSPDEMRLAVLIDAENVPYSNVKGIMEEIAKHGTPTLKRIYADW + TKPTMSGWKNVLLENAITPIQQYSYTSGKNSSDSAMIIDAMDILYSDQVEGFCIVSSD + SDFTRLVTRLREAGKKVYGIGERKTPSPFIAACDKFTYIEIISASLQNSRTFENGAKK + EEIAEKEQRSGTVSIGKNIINLISVSINDVEDENGWAFLGDVGNLIIKKQPDFDPRNF + GFYKLTHLIRKLKEFEIEERDTNNSKIKHIYVRNKSKRND" + gene 820218..820574 + /locus_tag="Ccel_0708" + CDS 820218..820574 + /locus_tag="Ccel_0708" + /inference="protein motif:PFAM:PF04297" + /note="PFAM: putative helix-turn-helix protein YlxM/p13 + family protein; + KEGG: cth:Cthe_0771 putative helix-turn-helix protein, + YlxM/p13-like protein" + /codon_start=1 + /transl_table=11 + /product="putative helix-turn-helix protein YlxM/p13 + family protein" + /protein_id="ACL75087.1" + /db_xref="InterPro:IPR007394" + /translation="MNKIYETSLLLDFYGQLLTERQYEILDLYYNNDFTFTEIAEQLN + ISRQGVFDNEKRGIAQLLEYENKLGLLGKFLHQKQKAQNVLGIMKKLKLNEFSRDDAD + IIENVITEIEDLVNNI" + gene 820611..821957 + /locus_tag="Ccel_0709" + CDS 820611..821957 + /locus_tag="Ccel_0709" + /inference="protein motif:TFAM:TIGR00959" + /note="KEGG: cth:Cthe_0770 signal recognition particle + subunit FFH/SRP54 (SRP54); + TIGRFAM: signal recognition particle protein; + PFAM: GTP-binding signal recognition particle SRP54 G- + domain; Signal peptide binding (SRP54) M- domain protein; + GTP-binding signal recognition particle SRP54 helical + bundle; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="signal recognition particle protein" + /protein_id="ACL75088.1" + /db_xref="InterPro:IPR000897" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004125" + /db_xref="InterPro:IPR004780" + /db_xref="InterPro:IPR013822" + /translation="MSVFEGLSGKLQDTIKKIRGQGRVSEKDVKDMMREIKLALLEAD + VNFKVVKEFISKISERAVGADVLESLTPGQQVVKIVHEELIELLGREQSKVTFAPKPP + TVFMMAGLQGAGKTTTAGKLANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPV + FTLENNQNPVQIAKEAVKFAEMKQNDLVILDTAGRLHIDEKLMDELLNIKNTVKPHEI + LLVVDSMTGQDAVNVSKTFNEKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAM + GEKLNDIEPFFPDRMASRILGMGDVLSLIEKAQEAYDEKKAIELEKKMRTMTFTLEDF + LDQMQQIKKMGPIGDLLGMMPGVDSKALKDIDIDEKQMGRTEAIIQSMTRKERLDPSI + INGSRRKRISAGSGTTIQEVNALLKQFEQMKKMMKMMSDMGKKGKKGGFGKFKMPF" + gene 822000..822245 + /locus_tag="Ccel_0710" + CDS 822000..822245 + /locus_tag="Ccel_0710" + /inference="protein motif:PFAM:PF00886" + /note="PFAM: ribosomal protein S16; + KEGG: cth:Cthe_0769 30S ribosomal protein S16" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S16" + /protein_id="ACL75089.1" + /db_xref="InterPro:IPR000307" + /translation="MAVKIRLKRMGAKKNPFYRVVVADSRYPRDGRFIEEIGTYNPIV + EPVQFKIDAEKVQKWIKNGAQPTDTVKSLLKKQGIIE" + gene 822418..822651 + /locus_tag="Ccel_0711" + CDS 822418..822651 + /locus_tag="Ccel_0711" + /inference="similar to AA sequence:KEGG:Cthe_0768" + /note="KEGG: cth:Cthe_0768 nucleic acid binding protein" + /codon_start=1 + /transl_table=11 + /product="nucleic acid binding protein" + /protein_id="ACL75090.1" + /db_xref="InterPro:IPR004088" + /translation="MMKELLESIARALVDFPDEVFVNEIQNEKSIILELKVAKDDMGK + VIGKQGRIAKAIRTVVKAAAVKDNRRVVVDIIQ" + gene 822722..823231 + /locus_tag="Ccel_0712" + CDS 822722..823231 + /locus_tag="Ccel_0712" + /inference="protein motif:TFAM:TIGR02273" + /note="TIGRFAM: 16S rRNA processing protein RimM; + PFAM: RimM protein; PRC-barrel domain protein; + KEGG: cth:Cthe_0767 16S rRNA processing protein RimM" + /codon_start=1 + /transl_table=11 + /product="16S rRNA processing protein RimM" + /protein_id="ACL75091.1" + /db_xref="InterPro:IPR002676" + /db_xref="InterPro:IPR007903" + /db_xref="InterPro:IPR011961" + /translation="MLEYLIVGQLINTHGVKGELKATSQTDDPQRFKKLKWVYIDKNG + SLEKYDINGVKFFKQFIIIKFQGVDSIEEAEKLKGFYIKVDRANAVKLPENSFFISDI + IGLKVYDENNQLLGELKDVIQTGSNDVYVVRDSDSKEILIPALKSVVKEVSIEEGKIS + VILPKGLLD" + gene 823231..823932 + /locus_tag="Ccel_0713" + CDS 823231..823932 + /locus_tag="Ccel_0713" + /inference="protein motif:TFAM:TIGR00088" + /note="TIGRFAM: tRNA (guanine-N1)-methyltransferase; + PFAM: tRNA (guanine-N1-)-methyltransferase; + KEGG: cth:Cthe_0766 tRNA (guanine37-N1) methyltransferase" + /codon_start=1 + /transl_table=11 + /product="tRNA (guanine-N1)-methyltransferase" + /protein_id="ACL75092.1" + /db_xref="InterPro:IPR002649" + /db_xref="InterPro:IPR016009" + /translation="MKFDVLTLFPELFNTVMGESIIGRAQKNRLVEVNAVNIRDYSKD + KHKKVDDYPFGGGNGMVMMCQPVIDAYKAISEGMEQKPKVIYMSPQGKVLTQEMAKEL + SKQEHLILLCGHYEGIDERIIEEIIDEEISIGDYVLTGGELPAMVLIDCVSRLIPGVL + STEGSFSDESHFNGLLEYPQYTRPADYNGNKVPEVLLSGHHANIEKWRMQQSLDRTRD + KRPDLFNKLPNKNLL" + gene 824050..824400 + /locus_tag="Ccel_0714" + CDS 824050..824400 + /locus_tag="Ccel_0714" + /inference="protein motif:PFAM:PF01245" + /note="PFAM: ribosomal protein L19; + KEGG: ctc:CTC01252 50S ribosomal protein L19" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L19" + /protein_id="ACL75093.1" + /db_xref="InterPro:IPR001857" + /translation="MDILKSIENEQIRTDLPKLEIGDFIKVHAKIKEGTRERIQVFEG + TVIALKGSGLKETFTVRRISYGVGVERVFPVNSPRVDRIDVVRKGVVRRAKLYYLRDR + VGKAAKIKEKLDRK" + gene 824556..825257 + /locus_tag="Ccel_0715" + CDS 824556..825257 + /locus_tag="Ccel_0715" + /inference="protein motif:TFAM:TIGR02227" + /note="TIGRFAM: signal peptidase I; + PFAM: peptidase S24 and S26 domain protein; + KEGG: cth:Cthe_0764 signal peptidase I" + /codon_start=1 + /transl_table=11 + /product="signal peptidase I" + /protein_id="ACL75094.1" + /db_xref="InterPro:IPR000223" + /db_xref="InterPro:IPR011056" + /translation="MENRNIDDKDQSNLENVNEENNVEGSVSENIKEESATAKKKNSV + GREIFEWFLVIVAALVISMVIKAFVFSTYKVNMVSMENTLYEGHNVIVYKTGYFFSQP + KHEQIIVFTHEEGQFKGLLKYLPVANPGEVDYIKRVIGLPGDEIDIRDGYVWRKSSGD + KDFIKLDEPYARGLTDSHGMQLPYKVPEDKLFVMGDNREQSLDSRQIGPVDIDSVIGH + AVLRIWPFSKFGGLK" + gene 825285..826163 + /locus_tag="Ccel_0716" + CDS 825285..826163 + /locus_tag="Ccel_0716" + /inference="protein motif:TFAM:TIGR03596" + /note="TIGRFAM: GTP1/OBG protein; + PFAM: GTP-binding protein HSR1-related; + KEGG: cth:Cthe_0763 GTP-binding protein YlqF" + /codon_start=1 + /transl_table=11 + /product="GTP1/OBG protein" + /protein_id="ACL75095.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR006073" + /translation="MNIQWFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEI + NSLIKNKPRLVAFNKSDLADERISRQWIKWYADQGIDCILINSINGKGLNEIKAKARE + LMFEKIERNRAKGKLFTPVRTMVVGIPNVGKSSFINKIVGKATAVTGDRPGVTRGKQW + IRISSEMELLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMALLYRLSKTYN + NELCTRFKLEPESINGMEPLELLETVGRKRGCIISKGEIDYSRISAIVLDEFRGGKIG + RITLEKPGDRAETMTE" + gene 826291..827058 + /locus_tag="Ccel_0717" + CDS 826291..827058 + /locus_tag="Ccel_0717" + /inference="protein motif:PFAM:PF01351" + /note="PFAM: ribonuclease HII/HIII; + KEGG: cth:Cthe_0761 RNase HII" + /codon_start=1 + /transl_table=11 + /product="ribonuclease HII/HIII" + /protein_id="ACL75096.1" + /db_xref="InterPro:IPR001352" + /translation="MGTLTLKQIQEEAQKLSIQEAIEYLSTLHSTGFKVDKLLEKYYR + LKNKHDREMERLQKMLSFERQAISEGFNYIAGVDEAGRGPLAGPVVAAAVVLPNGLTI + EGINDSKKLSESQREKLFSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQL + EPTADCILLDAVRLDNISTKQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQ + YGFAAHKGYGTPQHISAIKKFGLCPIHRLSFVKNFVE" + gene 827115..828893 + /locus_tag="Ccel_0718" + CDS 827115..828893 + /locus_tag="Ccel_0718" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0760 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75097.1" + /translation="MRIDGLAAGQINISNNNTDILNKLKPGDVIRAQILKNSGEELTI + KLSDSSEVHANALTTINAKEGEFVNFVFKGTEGGKLVLESLGTNVTQSVNETLVNAKN + VLTSLLLPLSDENIEMAMSLLKQNVPVTKETLLQMTDLINDRKGLKADTAAFSIASKL + TDDMNNIEKLQNLLSGRLKITDNISGLVKLIENAGTTETPKTAEEIVNRLAILIRENN + ENVPVKTSVINNLLEKLCSEIKTKFGSAEGIVQGANININSAKKSGAALLIGDNSTSN + IKTLQEKGAQSSATTVNTSNIHNSQAKTDTIINTNTLLAENTIQTPLSKADLPILKEL + RTQLQLVAGEQKLTQEQFTAVKYIAKEINNAIEKIGLRQLELDNFKFDTGKQRIMEEA + VNTLKSLIVRIDHRNSDDINPVRLYKDLDSSLIVVKNAMQHLPSVVREAAVNIVNNLE + SNVNFINQLNNYSSYVQLPLSIFNKNTTGELYMLKKGSKARKLDPSNLTILLSLETNN + IGRIDTLLSIKEKDVSTNFRLEDSGVFNILKDSHKMLYNSLLEKGYRLVDFTYKVLED + PISIVNFEEEAKKEFIKTPNNIDILV" + gene 828934..829230 + /locus_tag="Ccel_0719" + CDS 828934..829230 + /locus_tag="Ccel_0719" + /inference="similar to AA sequence:KEGG:Cthe_0759" + /note="KEGG: cth:Cthe_0759 flagellar biosynthesis" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthesis protein" + /protein_id="ACL75098.1" + /db_xref="InterPro:IPR006135" + /translation="MKENNEKKQIKHAAALQYSPDTDSAPKIVAAGKGQIAERIIQKA + QETNVPLYQDSNLAQTLSSLCIGDEIPPEIYEVVAEILIFIGCVDESYGDLYDD" + gene 829223..829603 + /locus_tag="Ccel_0720" + CDS 829223..829603 + /locus_tag="Ccel_0720" + /inference="protein motif:PFAM:PF02021" + /note="PFAM: protein of unknown function UPF0102; + KEGG: cth:Cthe_0758 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0102" + /protein_id="ACL75099.1" + /db_xref="InterPro:IPR003509" + /translation="MTDTNKREIGAIGEKEAAEFLQRNGYTILKTNYRAGRLGEIDII + ANENEYICFVEVKTRRTNTFGTPGEAVTRIKQQKIRQIATIYLKNTRKMDTKVRFDVI + EILMDKTKASTNSVKSINLIKDAF" + gene 829645..830583 + /locus_tag="Ccel_0721" + CDS 829645..830583 + /locus_tag="Ccel_0721" + /inference="protein motif:PFAM:PF01244" + /note="PFAM: peptidase M19 renal dipeptidase; + KEGG: cth:Cthe_0756 thermostable dipeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase M19 renal dipeptidase" + /protein_id="ACL75100.1" + /db_xref="InterPro:IPR000180" + /db_xref="InterPro:IPR006035" + /db_xref="InterPro:IPR008257" + /translation="MIFVDAHCDTITTIMKTGEALKNNKGHIDLDRLKKYESFVQFFA + AFIAPEQAKMGALRRTLDIIDKLYREIEINKNDIMLCRNYNDIVNAINSSKVAAVLTI + EGGEALEGSLSVLRILYQLGVRAITLTWNFRNQIADGVADSVTNGGLTPFGREVVAEM + NRLGMMVDVSHISEAGFWDVINLSSAPIIASHSNAKKICAHKRNLTDEQLLALKKNGG + VTGLNLYSDFIENEGKAEMKHVIAHIEHIIGLTGEDTLGLGADFDGIDKTPSGLEGVQ + CLTNLINELLRLNYSETLINKIAGENFLRVIKTVAK" + gene 831169..832446 + /locus_tag="Ccel_0722" + CDS 831169..832446 + /locus_tag="Ccel_0722" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aminotransferase class I and II; + KEGG: bpu:BPUM_2114 aminotransferase" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, GntR family" + /protein_id="ACL75101.1" + /db_xref="InterPro:IPR004839" + /translation="MKSYKDLSKEELKSEIEILEKRYNEFKAQNLKLDMTRGKPCAEQ + LDLSMDMLDIPAVELRKAADGTDCFNYGVLDGIPEAKALFAQMLEVSTDEIMVGGNSS + LNLMYDTIARAMSLGILGSTPWSKLNSVKFLCPSPGYDRHFAICELFGIEMITIDMKQ + DGPDMDTVEKLVSEDDSIKGIWCVPKYSNPDGITYTDEVVDRFSNLKPKAKDFRIFWD + NAYCVHHLTENPDKLKNILKACKDAGNDNMVYIFSSTSKVSFPGAGVAVMATSTENIK + GIKKSLTIQTIGHDKINQLRHAKYFKNLDGINSHMKKHADILKPKFNTVLEIFEGELG + GKDIASWNKPNGGYFVSLNTMDNCAKEVAKLASEAGVALTKAGATFPYGNDPRDRNLR + IAPTMPPIEELKKAIEVLVICVQLVSANKLLNQ" + gene 832690..834117 + /locus_tag="Ccel_0723" + CDS 832690..834117 + /locus_tag="Ccel_0723" + /inference="protein motif:TFAM:TIGR00928" + /note="TIGRFAM: adenylosuccinate lyase; + PFAM: fumarate lyase; + KEGG: cth:Cthe_0741 adenylosuccinate lyase" + /codon_start=1 + /transl_table=11 + /product="adenylosuccinate lyase" + /protein_id="ACL75102.1" + /db_xref="InterPro:IPR000362" + /db_xref="InterPro:IPR004769" + /translation="MKNVYESPLNARYASSEMQQIFSPDMKFTTWRKLWIALAEAEKE + LGLNITDAQIEQMKNNQDNINYEVAEKYEKQFRHDVMSHVHAFGELCPDAKPIIHLGA + TSCYVGDNTDIIVMSEALKLVKSKMLVLIKKLSDFAMEYKDLPTLGFTHYQPAQLVTV + GKRATLWIQELLMDMEDLEHVIKNMKLLGSKGTTGTQASFLNLFDGDHEKVKKLEKLI + AEKMGFKNVFAVSGQTYPRKLDSRVLGVLSGIAQSAYKFSNDMRLLQSMKEIEEPFEE + KQIGSSAMAYKRNPMRCERISSLARYVIVDALNPAITASTQWFERTLDDSANKRISVP + EAFLATDAILNIYINVASGLVVYPKVITKHIMDELPFMATENIMMEAVKRGGDRQELH + ELIRAHSMEAGKRVKVDGEKNDLIERIAGDARFGMTLDELNAVLEPKNYIGRSSEQVV + EFIENEVKPILTRESLADIQVDLKV" + gene 834215..834949 + /locus_tag="Ccel_0724" + CDS 834215..834949 + /locus_tag="Ccel_0724" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; UbiC + transcription regulator-associated domain protein; + KEGG: cth:Cthe_0740 GntR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL75103.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011663" + /translation="MINKFSSIPLYLQLKDLIIKKIENNEFPPNSQIPSEQDLCQMYD + ISRPTVRQAVSELTNSGYLYKEKGRGTFVYGRKNVIDIKNYSGFTDSILDCQIPAEKN + IIDLKEIESTSNGRLNEIFNYNSSIAVAQITYLSFINKNEVYSLNKSYISLSLFPDII + SQLKDGKSSIDILRGKYPLIPDKSKSVLEIIFADQIDSPLLRVQPGQPLIKLQNTLFS + KSGQPVEYIISKYRADNCRLLFENSK" + gene 835058..836170 + /locus_tag="Ccel_0725" + CDS 835058..836170 + /locus_tag="Ccel_0725" + /inference="protein motif:COG:COG2367" + /note="KEGG: cth:Cthe_1169 beta-lactamase class A-like + protein" + /codon_start=1 + /transl_table=11 + /product="Beta-lactamase class A-like protein" + /protein_id="ACL75104.1" + /translation="MSSYRINKQKKYKKRRALIISIGLLAIVAIAMAVYLFFNKVETA + GTIPPDSSKSAAAQTGTSQNTSTPSDSTAATGTNTDAVSTQSSAQSTDKDGVETKDHG + FLPNIGSVKKSGKMDGLKKLITDYTSGLSGKYGVTFIDLATGEMVNVNDTDRYIAAST + SKLPINVLLYKYIEEGKVNMDDILTYQKEDFEPGTGIIQRSAYGTQYTVRETSKLAIR + KSDNCGVNMIIRLLDIQNIRQYLVDLGGKVYYDERHRSCPYDMALVAQDLYKHYLKNE + AVYGDLINDLENTDWRDRIDAKLTGVKVAHKIGNQVKTANDVGIVFASHPYVLSIMAD + NVDFGTACKNEATLSKMIYDYVEGYAGSTDGLQNNN" + gene 836291..836932 + /locus_tag="Ccel_0726" + CDS 836291..836932 + /locus_tag="Ccel_0726" + /inference="protein motif:PFAM:PF09335" + /note="PFAM: SNARE associated Golgi protein; + KEGG: cma:Cmaq_1693 SNARE associated Golgi protein" + /codon_start=1 + /transl_table=11 + /product="SNARE associated Golgi protein" + /protein_id="ACL75105.1" + /db_xref="InterPro:IPR015414" + /translation="MQNFIFNLIHHVIENNVIVTYLFFFLSGILQLVFPPFPSDVIIV + FEGYLTTLGGQFHFIPVMINSILGSLIGSILVYWFGYKKGNEVLRYKIVLKYIDEKHI + KRSEKVFHKYGKYGLILSKFIPGTSTIMVLFSGVFRVEKKVCFSYVMISIILQQLVYL + LIGRLIGNNIDAVNRFLSYFNIFSVAILACFVIVGFVLYKVKKSKKRVSTDNK" + gene 837037..837198 + /locus_tag="Ccel_0727" + CDS 837037..837198 + /locus_tag="Ccel_0727" + /inference="protein motif:PFAM:PF07561" + /note="PFAM: protein of unknown function DUF1540; + KEGG: amt:Amet_4089 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1540" + /protein_id="ACL75106.1" + /db_xref="InterPro:IPR011437" + /translation="MDAPCMKVKCGVINCAYNEGHMCYADALEVNPMDGAKASISDET + CCTTFKDKI" + gene 838275..842915 + /locus_tag="Ccel_0728" + CDS 838275..842915 + /locus_tag="Ccel_0728" + /inference="protein motif:PFAM:PF00963" + /note="PFAM: type 3a cellulose-binding domain protein; + cellulosome anchoring protein cohesin region; protein of + unknown function DUF291; + KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin + region" + /codon_start=1 + /transl_table=11 + /product="cellulosome anchoring protein cohesin region" + /protein_id="ACL75107.1" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002102" + /db_xref="InterPro:IPR005102" + /db_xref="InterPro:IPR006162" + /translation="MRKKSLAFLLALTMLVTLLGAQLTAFAAGTGVVSVQFNNGSSPA + SSNSIYARFKVTNTSGSPINLADLKLRYYYTQDADKPLTFWCDHAGYMSGSNYIDATS + KVTGSFKAVSPAVTNADHYLEVALNSDAGSLPAGGSIEIQTRFARNDWSNFDQSNDWS + YTAAGSYMDWQKISAFVGGTLAYGSTPDGGNPPPQDPTINPTSISAKAGSFADTKITL + TPNGNTFNGISELQSSQYTKGTNEVTLLASYLNTLPENTTKTLTFDFGVGTKNPKLTI + TVLPKDIPGDSLKVTVGTANGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEV + VSVDAGPIVKNAAVNFSSSASNGTISFLFLDNTITDELITADGVFANIKFKLKSVTAK + TTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTIDPGTQPTKELKVAVGTANGKPGDTV + TVPVTFADVVNVGNVGTCNFYLGYDASLLEVVSVDAGPIVKNAAVNFSSSASNGTISF + LFLDNTITDELITSDGVFANIKFKLKSVATKTTTPVTFKDGGAFGDGTMAKIATVTKT + NGSVTIDPGTQPTKELKVAVGTANGKPGDTVTVPVTFADVASAGNVGTCNFYLAYDAS + LLEVVSVDAGPIVKNAAVNFSSSASNGSISFLFLDNTITDELITADGVFANIKFKLKS + VAAKTTTPVTFKDGGAFGDGTMTKIATVTKTNGSVTIDPGTQPTKELKVAVGTAEGNV + GDTVTVPVTFADVASAGNVGTCNFYLAYDASLLDVVSVAAGPIVKNAAVNFSSSASNG + SISFLFLDNTITDELITADGVFANITFKLKSVTAKTTTPVTFKDGGAFGDGTMAKIAT + VTKTNGSVTIVPGIQPTKELKVAVGTAEGNVGDTVTVPVTFADVASAGNVGTCNFYLA + YDASLLDVVSVAAGPIVKNAAVNFSSSASNGSISFLFLDNTITDELITADGVFANITF + KLKSVAAKTTTPVTFKDGGAFGDGTMAKIATVTKTNGSVTIVPGIQPTKELKVAVGTA + EGNVGDTVTVPVTFADVASAGNVGTCNFYLAYDASLLDVVSVAAGPIVKNAAVNFSSS + ASNGSISFLFLDNTITDELITADGVFANITFKLKSVAAKTTTPVTFKDGGAFGDGTMA + KIATVTKTNGSVTIVPGIQPTKELKVAVGTASGKAGDTVTVPVTFADVATVGNVGTCN + FYVTYDTNLLEVASVTPGSIVTNAAVNFSSSTSNGTISFLFLDNTITDQLIKTDGTFA + EIKFKLKSVTAKTTTPVAFKDGGAFGDGTMAKIATVTKTNGSVTIDVGDVTPVNPTIT + PSTASFDKYVPANVNVTLTPNGNTFKGITGLTSGTDFTVSNNVVTISKSYLSTLAVGS + KTLTFDFGVTNNPVLTLTITDSTPVVTGLGVKIASVTGKTGDTITVPVTLSNVVKSGN + VGTCNFYITYDASMLQAVSATAGDIVLNAPVNFSSSINATTGTISILFLDNTIGDQLI + TSDGVVANLTFKVVGTSSTTTPIAFKAGGAFGNGNMSKISDITFTNGSAKLN" + gene 843032..845200 + /locus_tag="Ccel_0729" + CDS 843032..845200 + /locus_tag="Ccel_0729" + /inference="protein motif:PFAM:PF02011" + /note="PFAM: glycoside hydrolase family 48; cellulosome + protein dockerin type I; + KEGG: cpy:Cphy_3368 cellulose 1,4-beta-cellobiosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 48" + /protein_id="ACL75108.1" + /db_xref="InterPro:IPR000556" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MSKNFKRVGAVAVAAAMSLSIMATTSINAASSPANKVYQDRFES + MYSKIKDPANGYFSEQGIPYHSIETLMVEAPDYGHVTTSEAMSYYMWLEAMHGRFSGD + FTGFDKSWSVTEQYLIPTEKDQPNTSMSRYDANKPATYAPEFQDPSKYPSPLDTSQPV + GRDPINSQLTSAYGTSMLYGMHWILDVDNWYGFGARADGTSKPSYINTFQRGEQESTW + ETIPQPCWDEHKFGGQYGFLDLFTKDTGTPAKQFKYTNAPDADARAVQATYWADQWAK + EQGKSVSTSVGKATKMGDYLRYSFFDKYFRKIGQPSQAGTGYDAAHYLLSWYYAWGGG + IDSTWSWIIGSSHNHFGYQNPFAAWVLSTDANFKPKSSNGASDWAKSLDRQLEFYQWL + QSAEGAIAGGATNSWNGRYEAVPSGTSTFYGMGYVENPVYADPGSNTWFGMQVWSMQR + VAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTFQIPSTIDWEGQPDTWNPTQGYT + GNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSKG + ISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVIKSGVKFIDIRSKYKQDPEWQTMVA + ALQAGQVPTQRLHRFWAQSEFAVANGVYAILFPDQGPEKLLGDVNGDETVDAIDLAIL + KKYLLNSSTTINTANADMNSDNAIDAIDYALLKKALLSIQ" + gene 845329..846711 + /locus_tag="Ccel_0730" + CDS 845329..846711 + /locus_tag="Ccel_0730" + /inference="protein motif:PFAM:PF01270" + /note="PFAM: glycoside hydrolase family 8; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0269 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 8" + /protein_id="ACL75109.1" + /db_xref="InterPro:IPR002037" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MIKGSSLKRFKSLVMAAIFSVSIISTAIASSAADQIPFPYDAKY + PNGAYSCLADSQSIGNNLVRSEWEQWKSAHITSNGARGYKRVQRDASTNYDTVSEGLG + YGLLLSVYFGEQQLFDDLYRYVKVFLNSNGLMSWRIDSSGNIMGKDSIGAATDADEDI + AVSLVFAHKKWGTSGGFNYQTEAKNYINNIYNKMVEPGTYVIKAGDTWGGSNVTNPSY + FAPAWYRIFADFTGNSGWINVANKCYEIADKARNSNTGLVPDWCTANGTPASGQGFDF + YYDAIRYQWRAAIDYSWYGTAKAKTHCDAISNFFKNIGYANIKDGYTISGSQISSNHT + ATFVSCAAAAAMTGTDTTYAKNIYNECVKVKDSGNYTYFGNTLRMMVLLYTTGNFPNL + YTYNSQPKPDLKGDVNNDGAIDALDIAALKKAILTQTTSNISLTNADMNNDGNIDAID + FAQLKVKLLN" + gene 846796..848973 + /locus_tag="Ccel_0731" + CDS 846796..848973 + /locus_tag="Ccel_0731" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; type 3a + cellulose-binding domain protein; cellulosome protein + dockerin type I; + KEGG: cac:CAC0913 non-processive endoglucanase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75110.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MLKTKRKLTKAIGVALSISILSSLVSFIPQTNTYAAGTYNYGEA + LQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMS + YTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDH + SWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK + NLFDMADKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNW + GKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVS + YTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSVYKDFLKSQIDYALGSTG + RSFVVGYGVNPPQHPHHRTAHGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINN + YVNNEIACDYNAGFTGALAKMYKHSGGDPIPNFKAIEKITNDEVIIKAGLNSTGPNYT + EIKAVVYNQTGWPARVTDKISFKYFMDLSEIVAAGIDPLSLVTSSNYSEGKNTKVSGV + LPWDVSNNVYYVNVDLTGENIYPGGQSACRREVQFRIAAPQGTTYWNPKNDFSYDGLP + TTSTVNTVTNIPVYDNGVKVFGNEPAGGSENPDPEILYGDVNSDKNVDALDFAALKKY + LLGGTSSIDVKAADTYKDGNIDAIDMATLKKYLLGTITQLPQG" + gene 849066..851723 + /locus_tag="Ccel_0732" + CDS 849066..851723 + /locus_tag="Ccel_0732" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; Carbohydrate-binding CenC domain + protein; glycoside hydrolase family 9 domain protein Ig + domain protein; + KEGG: cac:CAC0561 cellulase CelE-like protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75111.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR003305" + /db_xref="InterPro:IPR004197" + /db_xref="InterPro:IPR014030" + /translation="MKKRLVKKVAMLIAIVLVLSSSIGQAFALVGAGDLIRNHTFDNR + VGLPWHVVESYPAKASFEITSDGKYKITAQKIGEAGKGERWDIQFRHRGLALQQGHTY + TVKFTVTASRACKIYPKIGDQGDPYDEYWNMNQQWNFLELQANTPKTVTQTFTQTKGD + KKNVEFAFHLAPDKTTSEAQNPASFQPITYTFDEIYIQDPQFAGYTEDPPEPTNVVRL + NQVGFYPNADKIATVATSSTTPINWQLVNSTGAAVLTGKSTVKGADRASGDNVHIIDF + SSYTTPGTDYKIVTDVSVTKAGDNESMKFNIGDDLFTQMKYDSMKYFYHNRSAIPIQM + PYCDQSQWARPAGHTTDILAPDPTKDYKANYTLDVTGGWYDAGDHGKYVVNGGIATWT + VMNAYERALHMGGDTSVAPFKDGSLNIPESGNGYPDILDEARYNMKTLLNMQVPAGNE + LAGMAHHKAHDERWTALAVRPDQDTMKRWLQPPSTAATLNLAAIAAQSSRLWKQFDSA + FATKCLTAAETAWDAAVAHPEIYATMEQGAGGGAYGDNYVLDDFYWAACELYATTGSD + KYLNYIKSSKHYLEMPTELTGGENTGITGAFDWGCTAGMGTITLALVPTKLPAADVAT + AKANIQAAADKFISISKAQGYGVPLEEKVISSPFDASVVKGFQWGSNSFVINEAIVMS + YAYEFSDVNGTKNNKYINGALTAMDYLLGRNPNIQSYITGYGDNPLENPHHRFWAYQA + DNTFPKPPPGCLSGGPNSGLQDPWVKGSGWQPGERPAEKCFMDNIESWSTNEITINWN + APLVWISAYLDEKGPEIGGSVTPPTNLGDVNGDGNKDALDFAALKKALLSQDTSTINV + ANADINKDGSIDAVDFALLKSFLLGKITL" + gene 851892..852584 + /locus_tag="Ccel_0733" + CDS 851892..852584 + /locus_tag="Ccel_0733" + /inference="protein motif:PFAM:PF00963" + /note="PFAM: cellulosome anchoring protein cohesin region; + KEGG: cac:CAC0914 cellulosome integrating + cohesin-containing protein, secreted" + /codon_start=1 + /transl_table=11 + /product="cellulosome anchoring protein cohesin region" + /protein_id="ACL75112.1" + /db_xref="InterPro:IPR002102" + /translation="MKKVLLAILIIVCATALVIFGVNHFTSDSETSTSTSTISSTASS + PTSPSASASVSTSSQSKSSDSKSAKTSAAKDSKDTKSNPKDKTPGGEAEISIGKVSGA + TGSTVTIPVKLNNLPKKGIGSFNFNIKYDTDALEVVEVKSGEIFGSNNSNFDYTVIDT + TGLVSFLYTSSNSGKDAVTKPGVITNITFKIKDNAKKGSIKISQGTSGAFGDTELKKI + NPVFTEGEITVK" + gene 852611..854824 + /locus_tag="Ccel_0734" + CDS 852611..854824 + /locus_tag="Ccel_0734" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; type 3a + cellulose-binding domain protein; cellulosome protein + dockerin type I; + KEGG: hau:Haur_0296 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75113.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MDKMKRVSIYALIVAIVITITQFNFQYKCSSATAAFNYGEALQK + SVLFYEAQRSGSLSTSNIPTRLLWRGDAQLTDGQKEGLDLTGGWVDAGDNIKFGITCA + YTTSLLAFGAIEYKDAYEKSGQMKWLQNQLKWINDYFIKCHPEPNVFWAQVGMTANDH + NNWIPIEVTHLMNDRAAIKLDEQHPGTEVAMGTAAAMAASSIVFRNTDPTYADKLLEH + AKQLYEFGDKYRGVFSDVIGKVDPQGAAAYTSHSGYKDELVWGSIWLYKAMEAKSSGS + GSDYLVKAKEYYNGIGKEANQQVHKYKWAHCWDDQSFGCYILMSQIDPENSLYREDAE + RWLNWWTVGGTENNADGTKISYTPGGHAKLDSWGSFRYVSTTALFAFVYSDKLNDTVK + KARYHDFAVKQINYILGDNPRKSSYMVGFGQNYPQHPHHRTAHSSWGQQMDTPTEHRH + ILYGALVGSVDSTDGFNDSISDYVSNEVAIDYNAGLTGALARMYSEFGGTPIPDSSFP + LPDKPYQPKNEWPVFAKTYYDGTSGTQFSLSVENRSAWPARSSNQLKIRYFFTLDAKD + ISDISIKAPAWVKVTGPTAWDKEKKVYYYTLDLSGKNIYPGYGWGTGGPELDFTISSA + SNTWDATNDWSYENWDATYVNGTRKYAPNIPMYEGDSFKKLAGNEPAGESEEPIILPG + DINKDGNIDALDVALLKKYLLGNTLEYDISTADMNSDKNIDALDFALLKKALLSQ" + gene 855012..857285 + /locus_tag="Ccel_0735" + CDS 855012..857285 + /locus_tag="Ccel_0735" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; type 3a + cellulose-binding domain protein; cellulosome protein + dockerin type I; + KEGG: cth:Cthe_2360 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75114.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MNFKKYVRKTTAFATAMAVVSSVFLGSSVYAGSTTPPFNYAEAF + QKSLYFYDAEKCGPGVTGGKLEWRGDCHVEDCELPLIPMKDYVGTNMSQAFIDKNKAF + LDPDGNGSLDLHGGFHDAGDHVKFGLPQGYTISTLGWGFYEFKDSFTQINEEDHIRDI + LKWGNDYFLRSTFMDNKGEVVAFCFQVGDGTVDHAWWQPPELNKKSEVPRPAFFATSE + TPASDQCGEAAASLAINYLNFKDSDPAYAKKCLDTAKALYRFAVKNRGLGDSGGFYGS + AYDEDELSWAAVWLNIATGEQSYINDITAISDGKYTGYMGKIIKSTQDNWQNIWVHSW + DVVWGGVFAKLAPITNDPMHWYLFRWNLEYWSGIPHENPTDQTFMAATPGGFKVVNTW + GSARYNAAAQLCAVVYTKYTDNMDVTEWAKSQMDYILGDNPMKRSYEVGFSEISAKHP + HHRAAHGSKTLSMNDPLEHRHTLWGALVGGPDATDNHNDETTDFVSNEVAVDYNAGFV + GALAGLYKYYGEGMKPLENFPPKEPAADDFYAESKLEQENTERTQVTVRIHNETSRPP + EFVDELKARYFFDISEMLAAGQTIDDLTVAVMYDEGKASDGKETAINGPFAWDAEKGI + YYVEIDWTGNAFYGDKEFHFGLVEGLDSNWKSHWDPTNDWSRKNIEKEYSINQNISVY + RGDVKVYGNEPPKGNVGTKLGDLNGDGSVDALDYAIMKKYILLPTGEVDLNTWDMNQD + GEINALDLALLKKTLLG" + gene 857323..858597 + /locus_tag="Ccel_0736" + CDS 857323..858597 + /locus_tag="Ccel_0736" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: cac:CAC0918 non-processive endoglucanase" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75115.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKIASLVLTTAMVFLAALPLPASAATTYKLGDVDNDTLISAID + LAAVQQHILGKKTLTGEAFKAADVNANGEIEALDLAELKQFLLGRITKFSGEGQQQPS + GVGITWMDGNTLYPVGVNYAWYNWSYEFSDNNWNSNFTRIKSDLDTMSSKGINSLRWW + VFPDLAYGPLWSGPNEGSLCTGLPEKWVDHMKETCDYAYSKGIKIYWTITSFDCARAD + DSVDHDDIIDNPIVLQSFLDNAMKPILQTLGEHPGVLGWDIINEPEWIIKKEDNGEPN + NKGEIFPLAAMRNYIKTTCDFIHQYAKQPVSFGSANMKWLGAQYDLWDGLGLDFYDFH + WYDWATPYFNPVTTPASSLKLDKPVIIGEMMPDTQSSSLKMTHKQVLDAIYKNGYAGY + MLWSWNDGAFDCKPYVGNNFIDFAAEHPDVVR" + gene 858687..860267 + /locus_tag="Ccel_0737" + CDS 858687..860267 + /locus_tag="Ccel_0737" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0274 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75116.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKSKLIKLSAIIISGVMLTTSFVNTGTAFAAGTHDYSTALKDSI + IFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKFGLPQGYSAA + ILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYWG + APEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELY + AMGKANQGVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQFITLGNTMNEN + KMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWKTQVTTTPGGLKWLSNW + GVLRYAAAESMVMLVYCKQNPDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHP + HHRAANGYTYANGDNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLV + GVLAGAIKFFGGTIVNPPVKKGDLNNDTFIDAIDLALCKNYILTQNGNIDKNNADMNG + DGSIDAIDFSLLKKAILG" + gene 860269..860400 + /locus_tag="Ccel_0738" + /pseudo + gene 860434..862464 + /locus_tag="Ccel_0739" + CDS 860434..862464 + /locus_tag="Ccel_0739" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; FG-GAP + repeat protein; + KEGG: bld:BLi01376 YesW" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75117.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR013517" + /translation="MRKKIFMLLLALLQVALLTIPQQLVTAASARQMEYLDRGIVAVK + VSNGVFVSWRMLGTDSTSIAFNLYRDGKKVNTTPITSGTNYVDTTGTASSTYYVCPVK + DGVELAKSESTAVWGQNYLSLPLQIPAGGTTKSGEYYTYSANDCSVGDLDGDGQYEII + LKWDPSNAKDNSQSGYTGNVYLDAYKLNGKFLWRIDLGRNIRAGAHYTQFMVYDLDGD + GKAEVACKTADGTKDGIGKVIGNANADYTNSNGYILSGPEYLTIFNGETGAALTTTDY + DPPRGTVSSWGDSYGNRVDRFLACIAYLDGVHPSLVMCRGYYTRAVLAAYNWRDGKLT + KVWTFDSKDSGNSAYEGQGNHNLSVGDVDSDGMDEIVYGACAIDHNGRGLYTTKLNHG + DAMHLSDMDPGRPGLEVWQCHETGSNASSGEYRDARTGQLIWGLAGTSDTGRGLALDI + DPRYKGFEMWSSSSDGVYNVNGTKVSTTKPSMNFGVWWDGDLNRELLDGTKLDKWDYV + NSTPMRLLTPADCASNNSTKANPCLSADILGDWREEVIWRTTDNKYLRIYTTTAVTSN + RIYTLMHDPLYRLSIAWQNVAYNQPPHTGFYLGDGMSQAPTPNIYIAKPASSFLPGDV + NNDGSVDALDFAIVKKYLLGQSTELDTGKADMNSDGDINALDLALLKASLLS" + gene 862504..864108 + /locus_tag="Ccel_0740" + CDS 862504..864108 + /locus_tag="Ccel_0740" + /inference="protein motif:PFAM:PF00150" + /note="PFAM: glycoside hydrolase family 5; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_2872 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 5" + /protein_id="ACL75118.1" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKRIVSMLMALAITSTMILSSHGLTAAAAVDTNNDDWLHCVGD + KIYDMNGREVWLTGANWFGFNCSENVFHGAWYDVKNILTSVADRGIGLLRVPISTELL + YSWMTGKPNKVSSVTASNNPPYTVVNPDFYDPATDGPKNSMEIFDIIMKYCKELGIKV + MIDVHSPDANNSGHMYPLWYGLETTTAGMITTDKWIDTLTWLAGKYKNDDTILAIDLK + NEPHGKRGYTNAAPTDMAKWDNTTDENNWKYAAERCSKEILAVNPKLLIMIEGIEQYP + KTEKGYTFDTPDVWGASGDAAPWHGGWWGGNLRGVKDYPIDLGPLNSQIVYSPHDYGP + SVYNQSWFDKDFTTQTLLDDYWYDTWAYIDDQKIAPLLIGEWGGFMDGAKNQKWMTLL + RDYMIKNRINHTFWCLNPNSGDTGGLIGNDWSTWDEEKYGLLKPALWQSGGKFIGLDH + QIPLGKNGMSLGEYYGDGPIIVDPEPIVGDVNDDGNVDALDLAVMKQYILGANPKISL + TNSDMNSDGDINALDFAMLKAKVLGK" + gene complement(864211..865176) + /locus_tag="Ccel_0741" + CDS complement(864211..865176) + /locus_tag="Ccel_0741" + /inference="protein motif:PFAM:PF00126" + /note="PFAM: regulatory protein LysR; LysR + substrate-binding; + KEGG: cbe:Cbei_3221 transcriptional regulator, LysR + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LysR family" + /protein_id="ACL75119.1" + /db_xref="InterPro:IPR000847" + /db_xref="InterPro:IPR005119" + /translation="MTSQQLEYIIRLADEKSFSKASQKLLISQPALSQFVKNLETELN + IQLFDRSTTPIKLTYAGELYVNAARKIQNILTELDNELTDLTVLNIGKLTIGTIPFRA + SCMLPKSIVAFRKKYPGIDIHIVENEEANLESFLTESRLDLCILSGSLHNKLLQTEIL + AQEQFYLAVPQDSPFNNGKEAFRISANDIIYDSSSLFLAKSLDLSVCVKEHFVLIQDD + ETIASKLSQFPEFSRQNAIYTDRIETAFSWTLAGIACSFIPDTLIRFGNYQKHPVYYK + LNTSFAKRDILVAYKKNRYLSKAASEYILLLKQLIGCGTWLSPNE" + gene 865353..866450 + /locus_tag="Ccel_0742" + CDS 865353..866450 + /locus_tag="Ccel_0742" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_2263 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75120.1" + /translation="MDISQEIYYKMIERSLISTGNNYRIKKAIEKAGKSHKITIAYLG + GSITEGYNGGSDKCFAKLACDYFEQAFGKGNPVNYINAGMAGTCSIIGLIRIERDLLM + HKPDIVFVEFAVNQSKDKINMAAFESLLLRLLNSEFQPAVVLIFTISEAGFSCQNEMS + QIGIHYELPMISVKDTIVPEFHEGRMKWQDYSNDYIHPHENGHKLITELIKYYLDTVS + KEDWGSNYCISESTVVGNEFLNLKMLDNTNTAVKTFGGFVPDKTINQFPNGWTHKAGT + KREKFSFDLYCRNLFLVFKESKGPNTGSVDIFIDNICVLSINGFSSSGWNNPVAKLLL + NKERSSNHKIEIKMSKGLEYKEFSILAFGYS" + gene 866523..867272 + /locus_tag="Ccel_0743" + CDS 866523..867272 + /locus_tag="Ccel_0743" + /inference="protein motif:PFAM:PF01520" + /note="PFAM: cell wall hydrolase/autolysin; + KEGG: aoe:Clos_2218 cell wall hydrolase/autolysin" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase/autolysin" + /protein_id="ACL75121.1" + /db_xref="InterPro:IPR002508" + /translation="MRKLRIIFLNRRILLIAAVLIIAILALPVILFIEISTSDTFTDP + KSGVIVIDPGHGGIDGGTSRDGVLEKEINLDIAKKLKSILMERGYKIIMTREEDVSLE + SLDNSRKSRHLRDLTARANIINNSNAQLFLSIHVNCNIKKPATDGAIVFFCKKYEQNR + TLALCIQRVLNNMVVDGKKRNVHDPVQAKYYVLNYTNIPGVIVETGFISNEEERQKLA + KGTFRQELAKSIAKGIEQYLDESSKVSTPAS" + gene complement(867284..868240) + /locus_tag="Ccel_0744" + CDS complement(867284..868240) + /locus_tag="Ccel_0744" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: bcl:ABC0931 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL75122.1" + /db_xref="InterPro:IPR004843" + /translation="MKKRLVTSLLTIFLLFLMSSTWFRVDASLFSSNKYCKEKPFTMV + WLSDPQYYAESYPQIYDFLGDWFVKKYKGNSFGYLIVSGDIINNASCVKQWKVASRNF + KKLDDADVPYGILAGNHDVIMNGLNYNTFKSYFGSSRYINKSWYGGNMDNNRNHYDLT + SFGRHNFIVLYLGFGTETTLTTTNWANKVLEKYGHRNAILVLHEYLDSDGEMTEKARI + VSDSIVLKNDNVFLVLCGHFHGAQRKVKMICNSDGTTRKVVEILSDYQKAPYGGNGFL + RFLKFSPQSGTLKVSLYSPYAKMDSYFGEGLDDFTENIKLID" + gene 868402..869817 + /locus_tag="Ccel_0745" + CDS 868402..869817 + /locus_tag="Ccel_0745" + /inference="protein motif:PFAM:PF00403" + /note="PFAM: Heavy metal transport/detoxification protein; + KEGG: cth:Cthe_1849 heavy metal transport/detoxification + protein" + /codon_start=1 + /transl_table=11 + /product="Heavy metal transport/detoxification protein" + /protein_id="ACL75123.1" + /db_xref="InterPro:IPR006121" + /translation="MLKILHVEGMTCTGCETRIENAIKKLDGVENVKVSYSNSNVYVT + YDIDAVNLNTIIEAVEKLNYKVKNKSNSIRNKPQFMGVGQIVGIAVIILALYIIIRNT + VGFNFIPQVNQSMGYGILFFMGMLTSLHCVAMCGGINLSVCVQYKAVTDGSKFDKLKP + SALYNLGRVISYTIVGGIVGGIGSVVSFSGTAKGVVAILSGFFMIIMGINMLNIFPVL + RKLNPRMPKIFSRKVHENGINRGPLIVGFLNGLMPCGPLQAMQIYALGTGSAMTGALS + MFLFCLGTIPLMFGFGAVSSFLSGKFTHRMMKVSAVLVLLLGVLMLNRGLLLSGFNTS + VVLGMSASGSGVAKIEGNVQIVNTKLDSGRYSPIIVQKGIPVKWIITADSSDINGCNN + SINVPEYNLENKQLKAGQNVIEFTPGEEGNFVYSCWMGMITSNIKVVSDLSSVSDEDK + QATAIHRVRSPVREAAVVSLL" + gene 869844..872291 + /locus_tag="Ccel_0746" + CDS 869844..872291 + /locus_tag="Ccel_0746" + /inference="protein motif:TFAM:TIGR01511" + /note="TIGRFAM: ATPase, P-type (transporting), HAD + superfamily, subfamily IC; copper ion binding protein; + copper-translocating P-type ATPase; heavy metal + translocating P-type ATPase; + PFAM: Haloacid dehalogenase domain protein hydrolase; + Heavy metal transport/detoxification protein; E1-E2 + ATPase-associated domain protein; + KEGG: cth:Cthe_1848 copper-translocating P-type ATPase" + /codon_start=1 + /transl_table=11 + /product="copper-translocating P-type ATPase" + /protein_id="ACL75124.1" + /db_xref="InterPro:IPR001756" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR001877" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006121" + /db_xref="InterPro:IPR006122" + /db_xref="InterPro:IPR006403" + /db_xref="InterPro:IPR006416" + /db_xref="InterPro:IPR008250" + /translation="MDRKESLKITGMSCAACAARIEKGLNKLEGVKQANVNFAVEKAT + VEYDDNLTDLGKFQETIKKLGYGVIKESSKSGNKVELKLTGMSCAACSSKIERKLNKT + EGIAKAAVNLATEKANIEYDLSTVKVSDIIKTIERLGYGAEKAEEVNRDTEKEQREKE + IRSLKLSLIVSAVLSAPLVLAMILGMLKLDSPVLSLLHNEYFQLIITTPVQFIIGFRF + YKHAYYALKSKSANMDVLIAMGTSAAYFFSLYNVFFEEVQKGMMKNLYFEAAAVIITL + ILLGKYLEAVAKGKTSEAIKKLMGLQAKTARVLRNGTEEDIPIEDVLPGDIVVVRPGE + KIPVDGKILEGNSSIDESMLTGESLPVEKKAGDFVIGATINKFGTFRFEATKVGKDTA + LSQIIRMVEDAQGSKAPIQKIADKVSGIFVPIVVAIALLTFVIWLFVTGDVTKAIVSA + VAVLVIACPCSLGLATPTAIMVGTGKGAENGILIKGGEHLEMAYKLNAVVLDKTGTIT + KGEPEVTDIVVLDNTYEKMEILRLASITEKSSEHPLGVAIYEYGKKELGKINDPDKFE + AIPGRGVLSVIDGKTIYIGTRKLMREQGIDIASVGAGIERLEDEGKTAMLMSIDNRLT + ALIAVADTLKESSKEAIQELKSIGIEVYMITGDNKRTANAIAKLVGITNVLAEVLPEN + KAEEVEKLKASGKIVAMVGDGINDAPALATADIGMAVGTGTDVAIEAADITLMRGDLR + TIPAAIRLSRKTMNKIKQNLFWAFFYNIIGIPFAALGLLNPMIAGGAMAFSSVSVVAN + SLSLKGFKPMETRKKNN" + gene 872593..873489 + /locus_tag="Ccel_0747" + CDS 872593..873489 + /locus_tag="Ccel_0747" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; SH3 type 3 domain protein; + SMART: SH3 domain protein; + KEGG: csc:Csac_1052 NLP/P60 protein" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL75125.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR003646" + /db_xref="InterPro:IPR013247" + /translation="MVQKINKVLVGCFIVLFLAFASTAVMAASMPAKITGTNVKMRKA + PTTASVIVTKLTNAKVTVTDHSKGWYKVSYNKKTGWVNGNYVRLQSTKGIINANGVNF + RKSSGTNSKVISSLKKNTSLQILDITKGWNKVKIGSKVGYVSSKFVNISAASEKTSRS + GNVVAFTAGNDDGSINSKIIEYARNFEGVRYSYGGANPQTGFDCSGFVGYVYKKFDVK + LNRSAQGMYSNGVKVSKTQLKPGDILFFDASSRKAAGQIDHAGIYIGGNTFIHASSSN + GKVRVQKLSEYRGTYIGAKRVV" + gene 873713..874177 + /locus_tag="Ccel_0748" + CDS 873713..874177 + /locus_tag="Ccel_0748" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL75126.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene 874457..876088 + /locus_tag="Ccel_0749" + CDS 874457..876088 + /locus_tag="Ccel_0749" + /inference="protein motif:TFAM:TIGR01703" + /note="TIGRFAM: hybrid cluster protein; + PFAM: Prismane; + KEGG: cth:Cthe_0036 hydroxylamine reductase" + /codon_start=1 + /transl_table=11 + /product="hybrid cluster protein" + /protein_id="ACL75127.1" + /db_xref="InterPro:IPR004137" + /db_xref="InterPro:IPR010048" + /translation="MGMFCYQCQETGRNKGCEFGGVCGKSEDLADLQDLLIYTLKGIS + EIIIKGKLDIKNISYVNHQVIKGLFMTITNANFNDDVIIMKIEQMLSIRNELRTKVSV + KNLHDAATFEIETMNDMVYKASYVGAVPKDKEDVRSLKHLILFGIKGLAAYTYHALNL + RKEMEKLYAIIYEALAATLETDLTIEYLVALSMKVGEAGVNAMALLDEANTSQYGNPE + TTKVNIGVRNNPGILISGHDLTDLEQLLEQTKGTGIDVYTHSEMLPSHYYPAFKKYDN + LAGNYGNAWWKQEDEFVSFNGPILFTTNCIVPPNSEDVRSRIFTTGISGFPGCVHIES + DSNGKKDFSKIIELAKTMKPPVEIEKGSIVGGFGHNQVFALSDKVVNAVKTGAIKKFF + VMAGCDGRMESREYYTQFAKKLPMDTVILTAGCAKYRYNKLGLGDIGGIPRVLDAGQC + NDSYSLVMIALKLKEVFGLQDINDLPIVYNLSWYEQKAVLVLLALLYLGVRNIHLGPT + LPAFLSPNVIKILVDNFGIAEIGAVDDDIKLLMEI" + gene 876246..877142 + /locus_tag="Ccel_0750" + CDS 876246..877142 + /locus_tag="Ccel_0750" + /inference="protein motif:PFAM:PF00457" + /note="PFAM: glycoside hydrolase family 11; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_2972 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 11" + /protein_id="ACL75128.1" + /db_xref="InterPro:IPR001137" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKKIMRALTLGLSIVCCTFALNVQAATTITENKTGTIDGYDYE + LWKDNGTTSMTLNGGGKFSCSWSNINNALFRTGKKYNETQTHQQLGTISLDYACNYQP + SGNSYLSVYGWTSSPLVEYYIIESWGNWRPPGAQSKGTITVDGATYDVYETTRVNQPS + IKGTATFQQYWSVRTSKRTIGTISVSEHFKAWEKMGMTMGKMYEVSLVVEGYQSSGRA + DVTTMSINVGSQPPPVTKGDLNADGSINALDIAALKSHLIGATKLSGTALSNADVNGD + GQVDALDFATMKKFLLGMISKF" + gene complement(877285..878328) + /locus_tag="Ccel_0751" + CDS complement(877285..878328) + /locus_tag="Ccel_0751" + /inference="protein motif:PFAM:PF00639" + /note="PFAM: PpiC-type peptidyl-prolyl cis-trans + isomerase; + KEGG: cth:Cthe_2633 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="PpiC-type peptidyl-prolyl cis-trans isomerase" + /protein_id="ACL75129.1" + /db_xref="InterPro:IPR000297" + /translation="MYRKFVNALITVAMVLTSIIPASNTFAATAKTATPETHVAKVGT + DKISKEEYNFFLRDAISMIQSYFNSYNVDWNAKINDMKASEYAKKIALDNIVDFKIQL + SKAKDAKITLTKNEMDEFNGNMNSYLNSLASTTKDQENIIKNETGFTLAQFKSFYNNV + YIVRKFASETQKKFNCTDTELKKYYNSNKNLFYKVVVGHILFLTTDENNQSTPKKEAE + AKKKAEETLLKINSPNSDFAALVKELSEDPGSKETGGKYTVMNNNQFVPEFQNWAVNP + SRKVGDTGIIKTSYGFHVMKLMKIYSFNQLKSDIKSSYIIKKYDDNLSAWRKDKKYKV + VKNESVLNAIKVP" + gene 878565..880298 + /locus_tag="Ccel_0752" + CDS 878565..880298 + /locus_tag="Ccel_0752" + /inference="protein motif:PFAM:PF02156" + /note="PFAM: glycoside hydrolase family 26; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_2811 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 26" + /protein_id="ACL75130.1" + /db_xref="InterPro:IPR000805" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MDKNNFLKVFLVLALAALIPLIPAANVPANAMLEEGIKYEFENG + VQKNAEIHTDYVGKTDDGLTFDLSGATCSFIGQKGTSTSVNVDIDQTGLYELVVRYAQ + PYDKTKKVQYLNVNDSNQGEVSFPYTLSWREMSAGIVKLNKGTNNIEFEGYWGYTFFD + YLIVKPADESITSLKVEKKLVNPDATKEAKALMSYLVDMYGKHIISGQQELCGSHNYE + ESEAEFTYIKDKTGKMPALRGFDFMNYRGNGLSWDDLCAERVIDWYKNKGGIPTVCWH + WFSPANIGKKADNSFYTESTTFSISKALTPGTAENTALLNDIKTMSEKFKQLQDAGVP + VLFRPLHEAEGGWFWWGAEGPENCVKLYRLLFDKFTNEYNLNNIIWVWTSYTYDTSSK + WYPGDDVVDILGYDKYNAKDGLPNGSAISSTFYNMVKLTNGKKLVTMSENDTIPQVSN + LTNEMAGWLYFCPWYGWHLTGEQNNPVDWLKQMYTSDYCITLDELPDLETYPFPSDGD + IPTIMYGDLNEDKLIDAIDLALLKKCILENNQSLKSADVDGNGSVDAIDFVYMKKFLT + GEISGFPASGK" + gene 880333..882669 + /locus_tag="Ccel_0753" + CDS 880333..882669 + /locus_tag="Ccel_0753" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0433 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75131.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002105" + /translation="MKKGRILKVTRASIMSIVILAMLATSFTVMNVSAAGTEYNYAKL + LQYSQYFYDANMCGTGVGENNQYTWRNDCHIYDAKLPLDSKNTNMADSFIRQNKSVLD + PDGDGMVDVSGGFHDAGDHVKFGMPEAYSGSTLGWGFYEFRDQYVTSGQDSHIKTILR + YFNDYFMNSTFLDSTGKAIAFCYQVGDGDVDHAYWQAPEVDEMFRRGWFATDEMPSTD + CVAAAAASLAVNYMNFKDEDPAYAEKSLKYAKALFQFAERCPTKSVNIDGPKGYYTSS + KWQDDYCWAASWLYLATKDDHYLDETLKNFDYYAPSCWTHCWNDVWAGTACIIAEIND + LIDKNGQVLEDRYKTLTNKSPYEEIDFWSQIAKLVDGWMTGKNVTLSPGGYAFLNQWG + SARYNTATQLIALVYDKNHGDTPSKYSQWAKSQMDYLLGNNPLNRCYVVGYSDNAVKY + PHHRASSGYATAEGTSPQKYVLYGALVGGPDASDQHKDVTSDYIYNEVTIDYNAAFVG + ASAGIYRYFGNSSMLVTPNFPPPPAEDDPEDPSGSAYWVEGFCVDVAQSDGPKATEVT + LYVKSNVSKTSKNISVRYYFDSTGMTSLDPNKIEMRQLYDQTAAETDYAAEFSGPHLY + KDKIYYVEVKWPNYVIANSNKKYQFAIGTYAWQNYWNPTDDWSHQGLKVVEDSWKGTP + EKTDNICVYDNGVLVGGIEPDGTTPGGNTPDPTIKLGDLNNDSAIDALDLTLLKMHLL + GLKILTGDALKAADIDASSTVDAIDYVQLKKIILTQAV" + gene 882843..884126 + /locus_tag="Ccel_0754" + CDS 882843..884126 + /locus_tag="Ccel_0754" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75132.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 884578..886518 + /locus_tag="Ccel_0755" + CDS 884578..886518 + /locus_tag="Ccel_0755" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; glycoside hydrolase family 9 + domain protein Ig domain protein; + KEGG: cth:Cthe_0825 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75133.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR004197" + /translation="MGLLTSERKGKTKARIACFFISGILATSGCIIPGNFNQNVYAAS + TSPGDYQQDSRIRLNSIGYLPEAEKKATIAASSSEFIVVNSSGTAVLTSRTTSAYNTD + TSEQVNIADFSSVKTEGSYTLLVPGIGKSVTFKIDKNIYANPFKTAMLGMYLWRCGTS + VSATHNGNVFSHETCHTKDAYTDYINGQHSIKDGGKGWHDAGDYNKYVVNAGITVGSM + FFAWEQFKDQIKEISLTMPESNNSMPDYLDELKYETDWLLTMQYPDGSGKVSHKLSTK + DFGGFVLPEKETTDRFFTPWGSAATADFVAMMAMASRAFRPYDAAYADKCIAAAKVSY + AFLKANPWNTKPDQSGFTTGAYDTTDTDDRLWAAAEMWETLGDSSYLADFEASANTFT + KKIDVDFDWGNVNNLGMFTYLLSERSGKNPALYNTIKSALISAADSIVAIADGHGYGR + PLGATYYWGCNGTVARQTMILNIANKLSPKSEYVNTSLDALNFLFGRNYYNRSFVTGL + GLNPPMNPHDRRSGGDSLKDPWPGYLVGGGWPGAKDWTDNQDSYETNEIAINWNGALI + YALAASLDTMSDTPDVLSGDINMDGKVDAIDYALLKQSILGLANLTGDALRLADVNHD + NTVDALDLSVLKQYLLGKITNL" + gene complement(886709..886912) + /locus_tag="Ccel_0756" + CDS complement(886709..886912) + /locus_tag="Ccel_0756" + /inference="similar to AA sequence:KEGG:Amet_3724" + /note="KEGG: amt:Amet_3724 glutamine-rich" + /codon_start=1 + /transl_table=11 + /product="glutamine-rich" + /protein_id="ACL75134.1" + /translation="MTVQSDLQKAVAACEAAKGTYKVMSESTQDQSAKQMYNELSSDL + EKHLQYLNSRLNYVSQGNELNQQ" + gene 887840..889480 + /locus_tag="Ccel_R0024" + rRNA 887840..889480 + /locus_tag="Ccel_R0024" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 889678..889754 + /locus_tag="Ccel_R0025" + /note="tRNA-Ile2" + tRNA 889678..889754 + /locus_tag="Ccel_R0025" + /product="tRNA-Ile" + gene 890279..893322 + /locus_tag="Ccel_R0026" + rRNA 890279..893322 + /locus_tag="Ccel_R0026" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 893582..893697 + /locus_tag="Ccel_R0027" + rRNA 893582..893697 + /locus_tag="Ccel_R0027" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 894101..894412 + /locus_tag="Ccel_0757" + CDS 894101..894412 + /locus_tag="Ccel_0757" + /inference="protein motif:PFAM:PF00338" + /note="PFAM: ribosomal protein S10; + KEGG: cth:Cthe_2902 SSU ribosomal protein S10P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S10" + /protein_id="ACL75135.1" + /db_xref="InterPro:IPR001848" + /db_xref="InterPro:IPR005731" + /translation="MSNKQKIRIRLKAFDHQVLDQSAEKIVETAKRTGAKVSGPVPLP + TEKEIITILRAPHKYKDSREQFEMRTHKRLIDVVLPTPKTVDALMRLDLPAGVDIEIK + L" + gene 894517..895155 + /locus_tag="Ccel_0758" + CDS 894517..895155 + /locus_tag="Ccel_0758" + /inference="protein motif:PFAM:PF00297" + /note="PFAM: ribosomal protein L3; + KEGG: cth:Cthe_2903 50S ribosomal protein L3P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L3" + /protein_id="ACL75136.1" + /db_xref="InterPro:IPR000597" + /translation="MKKAMLGKKIGMTQIFDENGLVIPVTVVEAGPLTVVQKKTVETD + GYDAIKVGYVKVAEKKLSKPNLGQFSKTKLAPMKHLKEFRLEDISGFEVGQEIKAENM + FQSGDKIDVSGVSKGKGFQGVTKRYGQRTGPNTHGSMYHRRIGSMGSGTNPGRVFKGK + KLPGHMGRETITVQNLEVVRVDSDRNLILIKGAIPGPKGGLLVIKNTVKSGK" + gene 895180..895803 + /locus_tag="Ccel_0759" + CDS 895180..895803 + /locus_tag="Ccel_0759" + /inference="protein motif:PFAM:PF00573" + /note="PFAM: ribosomal protein L4/L1e; + KEGG: cth:Cthe_2904 50S ribosomal protein L4P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L4/L1e" + /protein_id="ACL75137.1" + /db_xref="InterPro:IPR002136" + /translation="MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANR + RQGTQSTKTKSEVRGGGKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLP + KKVKRIAMKSALTSKVSGNEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVIDSKN + ENIVKSARNIPGIKTAYVNTLNVFDILKYDKFIITKDAVEKVEEVYA" + gene 895803..896156 + /locus_tag="Ccel_0760" + CDS 895803..896156 + /locus_tag="Ccel_0760" + /inference="protein motif:PFAM:PF00276" + /note="PFAM: Ribosomal protein L25/L23; + KEGG: cth:Cthe_2905 50S ribosomal protein L23P" + /codon_start=1 + /transl_table=11 + /product="Ribosomal protein L25/L23" + /protein_id="ACL75138.1" + /db_xref="InterPro:IPR013025" + /translation="MRLPQDIIIKPYITEKSNMEIGAGKYTFIVDVKSTKTEIKKAVE + ALFSVKVLQVNTMNFEGKVKRTGVHEGPRPAWKKAVVKIDTDPKPVEYLAKGGKTVTN + NKKYKTSIEEFGVAQ" + gene 896183..897016 + /locus_tag="Ccel_0761" + CDS 896183..897016 + /locus_tag="Ccel_0761" + /inference="protein motif:PFAM:PF00181" + /note="PFAM: ribosomal protein L2; + KEGG: cth:Cthe_2906 50S ribosomal protein L2" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L2" + /protein_id="ACL75139.1" + /db_xref="InterPro:IPR002171" + /db_xref="InterPro:IPR005880" + /translation="MAVKKYSPITPARRFMTSQDYSQLSKVEPEKSLLQSKSKNGGRN + SYGRITVRHHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADGEKR + YILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGN + AAQLMAKEGEYAQIRLPSGEVRMVRINCRATLGQIGNIEHENVKIGKAGRKRWMGVRP + TVRGVVMNPVDHPHGGGEGKSPIGRPSPVTPWGKPTLGYKTRKKKKKSDKYIVKRRNQ + K" + gene 897095..897376 + /locus_tag="Ccel_0762" + CDS 897095..897376 + /locus_tag="Ccel_0762" + /inference="protein motif:TFAM:TIGR01050" + /note="TIGRFAM: ribosomal protein S19; + PFAM: ribosomal protein S19/S15; + KEGG: hmo:HM1_1382 30S ribosomal protein S19" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S19" + /protein_id="ACL75140.1" + /db_xref="InterPro:IPR002222" + /db_xref="InterPro:IPR005732" + /translation="MSRSVKKGPYVLDSLLKKIEEMNKANDKKVIKTWSRASTIFPQM + VGHTIAVHDGKKHVPVYITEDMVGHKLGEFAPTRTYKGHSGNEKSTSLR" + gene 897441..897917 + /locus_tag="Ccel_0763" + CDS 897441..897917 + /locus_tag="Ccel_0763" + /inference="protein motif:TFAM:TIGR01044" + /note="TIGRFAM: ribosomal protein L22; + PFAM: ribosomal protein L22/L17; + KEGG: cth:Cthe_2908 50S ribosomal protein L22P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L22" + /protein_id="ACL75141.1" + /db_xref="InterPro:IPR001063" + /db_xref="InterPro:IPR005727" + /translation="MEKKVLSKEELLKNKDQILAEQNAKHTKSNRPALLTKKERKVLG + IGKDEGRAVLKYARISSRKVKIVLDLIKNKGIDEAYGVLKFTPKAASEVLYKLLKSAE + ANAVNNNSLNYENLYIAEAFATQGPTLKRIQPRAQGRAFKIQKRTSHITLVVKERD" + gene 897937..898605 + /locus_tag="Ccel_0764" + CDS 897937..898605 + /locus_tag="Ccel_0764" + /inference="protein motif:TFAM:TIGR01009" + /note="KEGG: cth:Cthe_2909 SSU ribosomal protein S3P; + TIGRFAM: ribosomal protein S3; + PFAM: ribosomal protein S3- domain protein; KH type 2 + domain protein; Ribosomal protein S3 domain; + SMART: KH domain protein" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S3" + /protein_id="ACL75142.1" + /db_xref="InterPro:IPR001351" + /db_xref="InterPro:IPR004044" + /db_xref="InterPro:IPR004087" + /db_xref="InterPro:IPR004088" + /db_xref="InterPro:IPR005704" + /db_xref="InterPro:IPR008282" + /translation="MGQKVNPHGLRIGIIKDWDTKWYANDKSFSSYLVEDVKIRNFIK + KKLYISGISRIEIDRAANKVKINVNTAKPGLVIGKGGQGIEELRKEIEKMTGKSVLIN + ITEIKVPEMDAQLVAENIASQLEKRISFRRAMKQAMSRTMKLGAKGIKTACSGRLGGA + EIARTEHYHDGTIPLQTLRADIDYGFAEADTTYGKIGVKVWIYKGEVLPAVKRDRKAE + GGVK" + gene 898605..899042 + /locus_tag="Ccel_0765" + CDS 898605..899042 + /locus_tag="Ccel_0765" + /inference="protein motif:PFAM:PF00252" + /note="PFAM: ribosomal protein L16; + KEGG: cth:Cthe_2910 50S ribosomal protein L16" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L16" + /protein_id="ACL75143.1" + /db_xref="InterPro:IPR000114" + /translation="MLMPKRVKHRRVHRGRMTGKATRGNFVSNGEFGIQAMEPAWITS + NQIEAARIAMTRFIKRGGKVWIKIFPDKPVTKKPAETRMGSGKGSPEYWVAVVKPGRV + LFEIAGVPEETAREALRLAMHKLPVKCKFVTRETEMGGEANES" + gene 899032..899235 + /locus_tag="Ccel_0766" + CDS 899032..899235 + /locus_tag="Ccel_0766" + /inference="protein motif:PFAM:PF00831" + /note="PFAM: ribosomal protein L29; + KEGG: cth:Cthe_2911 50S ribosomal protein L29P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L29" + /protein_id="ACL75144.1" + /db_xref="InterPro:IPR001854" + /translation="MKASEIREKDIVELNKELGELKSELFKLRFQLATNQLENPMKLK + DVKKSIARVKTIIREKELSGNNK" + gene 899358..899615 + /locus_tag="Ccel_0767" + CDS 899358..899615 + /locus_tag="Ccel_0767" + /inference="protein motif:PFAM:PF00366" + /note="PFAM: ribosomal protein S17; + KEGG: cpy:Cphy_3658 ribosomal protein S17" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S17" + /protein_id="ACL75145.1" + /db_xref="InterPro:IPR000266" + /translation="MVERALRKTRVGKVVSNKMDKTIVVAIETSVKHPLYGKIVKRTY + KLKAHDEENQCQIGDKVKVMETRPLSKEKRWRLVQIVEKAQ" + gene 899659..900027 + /locus_tag="Ccel_0768" + CDS 899659..900027 + /locus_tag="Ccel_0768" + /inference="protein motif:TFAM:TIGR01067" + /note="TIGRFAM: ribosomal protein L14; + PFAM: ribosomal protein L14b/L23e; + KEGG: cth:Cthe_2913 50S ribosomal protein L14P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L14" + /protein_id="ACL75146.1" + /db_xref="InterPro:IPR000218" + /db_xref="InterPro:IPR005745" + /translation="MIQVQSRMKVADNTGAKELMCIKVLGGSWRKYANIGDVVVASVK + NATPGGVVKKGDVVKCVIVRSKKGVRRPDGSYIRFDENAAVIIKDDKNPRGTRIFGPV + ARELREKNFMKIVSLAPEVL" + gene 900046..900396 + /locus_tag="Ccel_0769" + CDS 900046..900396 + /locus_tag="Ccel_0769" + /inference="protein motif:TFAM:TIGR01079" + /note="TIGRFAM: ribosomal protein L24; + PFAM: KOW domain protein; + KEGG: cth:Cthe_2914 50S ribosomal protein L24P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L24" + /protein_id="ACL75147.1" + /db_xref="InterPro:IPR003256" + /db_xref="InterPro:IPR005824" + /db_xref="InterPro:IPR005825" + /translation="MANKVHVKKNDTVLVLSGKDRGKKGKVLSVNPSNNQVLVEGINI + STKHKKPRGKYQQGGIIHQESHIDSSNVMLICDKCGKPTKVAKTILDNGQKARTCKNC + NEIIDIVLDKNKEG" + gene 900424..900966 + /locus_tag="Ccel_0770" + CDS 900424..900966 + /locus_tag="Ccel_0770" + /inference="protein motif:PFAM:PF00281" + /note="PFAM: ribosomal protein L5; + KEGG: cth:Cthe_2915 50S ribosomal protein L5P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L5" + /protein_id="ACL75148.1" + /db_xref="InterPro:IPR002132" + /translation="MTRLKDKYLNEAAPALIEKFKYSSRMQVPKLEKVVLNMGVGEVK + DNPKAMDSAVNDMTLITGQKPIVTKAKKSVAAFKLRQGMNIGCKVTLRGDRMYEFVDK + LFNVAIPRVRDFRGLSSNSFDGRGNYSMGIKDQLIFPEIEYDKVDKLRGMDIVFVTTA + KSDEEAKELLKLLGMPFSQN" + gene 900982..901167 + /locus_tag="Ccel_0771" + CDS 900982..901167 + /locus_tag="Ccel_0771" + /inference="protein motif:PFAM:PF00253" + /note="PFAM: ribosomal protein S14; + KEGG: cth:Cthe_2916 SSU ribosomal protein S14P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S14" + /protein_id="ACL75149.1" + /db_xref="InterPro:IPR001209" + /translation="MAKKAMIIKQQRTPKFSTRAYNRCKICGRPHAYIRKFGICRLCF + RQLAYKGQIPGVKKASW" + gene 901192..901587 + /locus_tag="Ccel_0772" + CDS 901192..901587 + /locus_tag="Ccel_0772" + /inference="protein motif:PFAM:PF00410" + /note="PFAM: ribosomal protein S8; + KEGG: cth:Cthe_2917 SSU ribosomal protein S8P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S8" + /protein_id="ACL75150.1" + /db_xref="InterPro:IPR000630" + /translation="MQITDAIADMLTRIRNAGSAKHESVDIPASNLKRSIANILLEEG + YIKNFEEISDGKQGVLRVNLKYNNKQNVITGIKRISKPGLRVYAGKDQLPKVLGGLGI + AVISTSKGIMTDKKARVEGIGGEVLAFVW" + gene 901703..902254 + /locus_tag="Ccel_0773" + CDS 901703..902254 + /locus_tag="Ccel_0773" + /inference="protein motif:TFAM:TIGR03654" + /note="TIGRFAM: ribosomal protein L6 signature 1; + PFAM: ribosomal protein L6; + KEGG: cth:Cthe_2918 50S ribosomal protein L6P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L6 signature 1" + /protein_id="ACL75151.1" + /db_xref="InterPro:IPR000702" + /db_xref="InterPro:IPR002358" + /translation="MSRIGKLPITVPKGVTVKLEGDNLLTVKGTKGTLSKKFNKDMII + KVEADQIVVQRPSDLKIYKSLHGLTRTLINNMVEGVTNGFQKTLEINGVGYRAQKQGK + KLVLTLGYSHPVEMEDPEGIATEVPAPNKIIVKGIDKQVVGEVAAKIREKRLPEPYKG + KGIKYETEVIRRKEGKTGGKGKK" + gene 902272..902640 + /locus_tag="Ccel_0774" + CDS 902272..902640 + /locus_tag="Ccel_0774" + /inference="protein motif:TFAM:TIGR00060" + /note="TIGRFAM: ribosomal protein L18; + PFAM: ribosomal protein L18P/L5E; + KEGG: tpd:Teth39_0390 50S ribosomal protein L18" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L18" + /protein_id="ACL75152.1" + /db_xref="InterPro:IPR004389" + /db_xref="InterPro:IPR005484" + /translation="MINKTNRNKIRLRKHLRVRKKITGTAERPRMNVFRSLNNIYVQI + IDDTTGNTLVSASTLDAALKGKVAKGGNKEAAKEVGKLVASKAIDKGIKKVVFDRGGY + IYHGRIKELADAAREAGLDF" + gene 902659..903162 + /locus_tag="Ccel_0775" + CDS 902659..903162 + /locus_tag="Ccel_0775" + /inference="protein motif:TFAM:TIGR01021" + /note="TIGRFAM: ribosomal protein S5; + PFAM: ribosomal protein S5 domain protein; Ribosomal + protein S5; + KEGG: cth:Cthe_2920 SSU ribosomal protein S5P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S5" + /protein_id="ACL75153.1" + /db_xref="InterPro:IPR005324" + /db_xref="InterPro:IPR005712" + /db_xref="InterPro:IPR013810" + /translation="MQRIDASTLGELKEKVVNIGRVTKVVKGGRNFRFSALVVVGDEN + GYVGSGMGKAAEIPEAIRKGIEDAKKNLIKVPLVDTTIPHEALGVFGAGKVLIKPAAQ + GTGVIAGGPVRAVLELAGIRDIRTKSLGSNNPINMVNATIEGLAQLKTAEEVARLRGK + TAEEILG" + gene 903175..903354 + /locus_tag="Ccel_0776" + CDS 903175..903354 + /locus_tag="Ccel_0776" + /inference="protein motif:PFAM:PF00327" + /note="PFAM: ribosomal protein L30; + KEGG: cth:Cthe_2921 50S ribosomal protein L30P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L30" + /protein_id="ACL75154.1" + /db_xref="InterPro:IPR000517" + /db_xref="InterPro:IPR005996" + /translation="MAKLKITLKKSTNKAVKSQAATVKALGLGKIGTTVEQNDNPQIR + GMIRKVSHLVCVEEI" + gene 903369..903812 + /locus_tag="Ccel_0777" + CDS 903369..903812 + /locus_tag="Ccel_0777" + /inference="protein motif:PFAM:PF00256" + /note="PFAM: ribosomal protein L15; + KEGG: cth:Cthe_2922 50S ribosomal protein L15P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L15" + /protein_id="ACL75155.1" + /db_xref="InterPro:IPR001196" + /db_xref="InterPro:IPR005749" + /translation="MKLFELQPAPGSKKLPNRKGRGIGSGNGKTGGRGHKGQNARAGG + GVRPGFEGGQMPLYMRLPKRGFNNYEFSKKYTEVNVSDLNIFDEGTVVTEELLKSSGL + AKKIIDGVAILGNGELTKKLTVQATKFTKTATEKIEAAGGKVEVV" + gene 903814..905106 + /locus_tag="Ccel_0778" + CDS 903814..905106 + /locus_tag="Ccel_0778" + /inference="protein motif:TFAM:TIGR00967" + /note="TIGRFAM: preprotein translocase, SecY subunit; + PFAM: SecY protein; + KEGG: cth:Cthe_2923 protein translocase subunit SecY/sec61 + alpha" + /codon_start=1 + /transl_table=11 + /product="preprotein translocase, SecY subunit" + /protein_id="ACL75156.1" + /db_xref="InterPro:IPR002208" + /translation="MSGMMDTLKNSWKIPDLKKKILITIGLLLIFRLGSKIPVPGLNP + DWFADLISKGGQLFNFIDIIGGGAFKNATIFAMSISPYINASIIMQLLTIAIPKLEQL + SKEGEEGRKKIGQWIRYATVILAFLQATAITIGLRGALISGLNVITFITVTLTLTAGT + AFLMWLGEQITEYGIGNGISMLIFAGILSAGPNGVSYIYKNYTLGNLGSGAIGILSIV + GILLVFVAVITCVVWVNQAERRIPVQYAKRVVGRKVYGGQSTHLPIKVNWAGVIPIIF + AMSIMMLPSTIVGFARPNATGGIAGFIKNWANHWSYALLYALLIIGFTFFYTYVQFNP + IELANNMKKNGGFIPGIRPGKPTSDYIARVLNRITWFGALFLALITIFPYIIGWITGV + QGVWFAGTSVLILVGVAIDTVRQIESQMLMRHYKGFLE" + gene 905207..905851 + /locus_tag="Ccel_0779" + CDS 905207..905851 + /locus_tag="Ccel_0779" + /inference="protein motif:PFAM:PF00406" + /note="PFAM: adenylate kinase; adenylate kinase lid domain + protein; + KEGG: cth:Cthe_2924 adenylate kinase" + /codon_start=1 + /transl_table=11 + /product="adenylate kinase" + /protein_id="ACL75157.1" + /db_xref="InterPro:IPR000850" + /db_xref="InterPro:IPR006259" + /db_xref="InterPro:IPR007862" + /translation="MRIILLGAPGAGKGTQAKIISEKLNIPHVSTGDIFRANIKGNTP + LGQKAKEYMDKGELVPDELTVEIVKDRLGNVDCVNGFILDGFPRTIPQAEYLDKVLVQ + MNINLDVALLIDVKDEDIIKRMSGRRVCTNCGATYNVVFNPTKVEGICDVCNSPVIQR + ADDAAETVLNRLETYHKQTQPLINYYEKAGKLKVAEGAGEVDETSKRVMKALGI" + gene 905853..906620 + /locus_tag="Ccel_0780" + CDS 905853..906620 + /locus_tag="Ccel_0780" + /inference="protein motif:TFAM:TIGR00500" + /note="TIGRFAM: methionine aminopeptidase, type I; + PFAM: peptidase M24; + KEGG: cth:Cthe_2925 methionine aminopeptidase, type I" + /codon_start=1 + /transl_table=11 + /product="methionine aminopeptidase, type I" + /protein_id="ACL75158.1" + /db_xref="InterPro:IPR000994" + /db_xref="InterPro:IPR001714" + /db_xref="InterPro:IPR002467" + /translation="MFTIKSQSEIDKMKKAGEILYETLQLIKKNTVPGVTTKELDRIA + EEYITKSHAFPSFKGYDVGIPGIDPFPASICASVNEEVVHGIPSLKPLKNGDIISIDV + GVYLNGFHADAARTFAVGNVTAEAQKLIDETRQSFFEGLKQMVIGNHIRDISEAIQNH + AESKGFSVVRDFVGHGIGRDLHEMPEIPNYVTKRRGARLESGMTIAVEPMINAGGYSV + KVIDNKWTVVTVDKSLSAHYENTVAITDNGPIILTRF" + gene 906728..907009 + /locus_tag="Ccel_0781" + CDS 906728..907009 + /locus_tag="Ccel_0781" + /inference="similar to AA sequence:KEGG:Cthe_2926" + /note="KEGG: cth:Cthe_2926 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75159.1" + /translation="MNAVLGQVVLSKAGRDEGKIFVVTGLIDDSYVLISDGNSRRLEN + PKKKKLKHLIITDNVIEAIAQKISSGEKCTNAEVRKAIVEYNLPVDTIV" + gene 907065..907283 + /locus_tag="Ccel_0782" + CDS 907065..907283 + /locus_tag="Ccel_0782" + /inference="protein motif:TFAM:TIGR00008" + /note="KEGG: cth:Cthe_2927 translation initiation factor + 1; + TIGRFAM: translation initiation factor IF-1; + PFAM: S1 IF1 family protein; + SMART: RNA binding S1 domain protein" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor IF-1" + /protein_id="ACL75160.1" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR004368" + /db_xref="InterPro:IPR006196" + /translation="MAKDDVIEVEGTVIEALPNAMFQVELENGHKVLAHISGKLRMNF + IRILPGDKVTLELSPYDLTRGRITWRAK" + gene 907375..907488 + /locus_tag="Ccel_0783" + CDS 907375..907488 + /locus_tag="Ccel_0783" + /inference="protein motif:PFAM:PF00444" + /note="PFAM: ribosomal protein L36; + KEGG: hmo:HM1_1403 50S ribosomal protein L36" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L36" + /protein_id="ACL75161.1" + /db_xref="InterPro:IPR000473" + /translation="MKVKPSVKTICEKCKIIKRKGRVMVICENPKHKQKQG" + gene 907724..908092 + /locus_tag="Ccel_0784" + CDS 907724..908092 + /locus_tag="Ccel_0784" + /inference="protein motif:PFAM:PF00416" + /note="PFAM: ribosomal protein S13; + KEGG: cth:Cthe_2929 30S ribosomal protein S13" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S13" + /protein_id="ACL75162.1" + /db_xref="InterPro:IPR001892" + /translation="MARIAGVDLPREKRVEVGLTYIYGIGRPKANEILVKTGVNPDTR + VRDLTDDEVNKIREIIDKEYKVEGDLRREIALNIKRLTEIGCYRGRRHRMGLPVRGQR + TKTNARTRKGPSKPVSGKKK" + gene 908114..908518 + /locus_tag="Ccel_0785" + CDS 908114..908518 + /locus_tag="Ccel_0785" + /inference="protein motif:PFAM:PF00411" + /note="PFAM: ribosomal protein S11; + KEGG: cth:Cthe_2930 30S ribosomal protein S11" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S11" + /protein_id="ACL75163.1" + /db_xref="InterPro:IPR001971" + /translation="MATKTAGAKRTTRKRRERKNIERGAAHIRSTFNNTIVTLTDTAG + NALSWASAGGLGFRGSRKSTPFAAQMAAETAAKAAMEHGLKTVEVYVKGPGAGREAAI + RALQAAGLEVSLIKDVTPIPHNGCRPPKRRRV" + gene 908549..909175 + /locus_tag="Ccel_0786" + CDS 908549..909175 + /locus_tag="Ccel_0786" + /inference="protein motif:PFAM:PF00163" + /note="PFAM: ribosomal protein S4; RNA-binding S4 domain + protein; + KEGG: cth:Cthe_2931 SSU ribosomal protein S4P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S4" + /protein_id="ACL75164.1" + /db_xref="InterPro:IPR001912" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR005709" + /translation="MARYTDASCRLCRREGEKLFLKGERCYTDKCSVARRPYAPGQHG + QGRKKMSEYGIQLREKAKVRRFYGVLEGQFSKYFEVASRRKGITGENLLQILETRLDN + VVYRLGLGTSRPESRQLVTHGHFTVNGKRVNIPSYLIKVGDVIAVADNSKNSPKVKSI + REIAGGKVIPKWLEFDEENLVGKVVALPAREDIDLPIKEHLIVELYSK" + gene 909298..910245 + /locus_tag="Ccel_0787" + CDS 909298..910245 + /locus_tag="Ccel_0787" + /inference="protein motif:TFAM:TIGR02027" + /note="KEGG: cth:Cthe_2932 DNA-directed RNA polymerase, + alpha subunit; + TIGRFAM: DNA-directed RNA polymerase, alpha subunit; + PFAM: RNA polymerase alpha subunit domain protein; RNA + polymerase dimerisation; RNA polymerase insert; + SMART: RNA polymerase RpoA/D/Rpb3-type" + /codon_start=1 + /transl_table=11 + /product="DNA-directed RNA polymerase, alpha subunit" + /protein_id="ACL75165.1" + /db_xref="InterPro:IPR011260" + /db_xref="InterPro:IPR011261" + /db_xref="InterPro:IPR011262" + /db_xref="InterPro:IPR011263" + /db_xref="InterPro:IPR011773" + /translation="MIEIEKPRIECVSNSDDNTYGKFIVEPLERGYGITLGNSLRRIL + LSSLPGSAVNSIKIDGVLHEFSTVPGVVEDVTEIILNIKSLSLLVHGEGSKVIYIDAN + GEGPITAGDIITDQDVEILNPDLHIATLNGDHRFYMEMVISKGRGYVSADKNKQAGQP + IGVIPVDSIYTPVKKVNYTVENTRVGQITDYDKLTLEVWTDGSINPDEAISLGAKILS + EHLNLFVDLSDQAKHTEIMVEKEETKKEKVLEMTIEELDLSVRSYNCLKRAGINTVED + LTNRTEEDMMKVRNLGRKSLEEVLQKLQALGLFLAPSEE" + gene 910313..910837 + /locus_tag="Ccel_0788" + CDS 910313..910837 + /locus_tag="Ccel_0788" + /inference="protein motif:PFAM:PF01196" + /note="PFAM: ribosomal protein L17; + KEGG: cth:Cthe_2933 50S ribosomal protein L17P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L17" + /protein_id="ACL75166.1" + /db_xref="InterPro:IPR000456" + /translation="MPGQRKLGRATDQRKAILKNLTTALFVSGRIETTEARAKEVKNI + AEKLITLAIKEADNFTSKQVKVSAAKVDSKGKKLTDTKTSKNGKKYFVVEREQKTDMV + SVDNASRLHARRLIMNWVYRPTTADGKNINITDKLFDEIAPKYKDKKGGYTRIYKLGP + RRGDAAEMVILELV" + gene 910981..911826 + /locus_tag="Ccel_0789" + CDS 910981..911826 + /locus_tag="Ccel_0789" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_2934 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75167.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSNNMFEVENVTFSYKSYGEVNVDIPALEHVSTTIEKGDFVVIL + GRNGSGKSTFARLLNALLTPLEGKVIVLGKNTADEKNLWDIRSSAGMVFQNPDNQIIA + TTVEEDVAFGPENLGVEPFEIRKRVDESLQTVGIAEYKKSAPHYLSGGQKQRVAIAGI + LAMKPKCIILDEATSMLDPIGRKEVIGVLKKLNKEEGITIIHITHHMDEAAIANRLII + IDNGRIVLDGTPKEVFSNVDTVKNLGLDVPQVTELTYRLKDYGISVDKLPLTVEEAFD + ILKQM" + gene complement(911830..912426) + /locus_tag="Ccel_0790" + CDS complement(911830..912426) + /locus_tag="Ccel_0790" + /inference="protein motif:PFAM:PF05175" + /note="PFAM: methyltransferase small; + KEGG: pmo:Pmob_1502 methyltransferase small" + /codon_start=1 + /transl_table=11 + /product="methyltransferase small" + /protein_id="ACL75168.1" + /db_xref="InterPro:IPR007848" + /translation="MNQHYFTENPESEIKEKRFTESICGSSLTFTSVSGVFSFETKID + RASENLIKNFTPSGMSVLDIGCGYGAIGLYIKSIFPQQNITMIDVNNRALDYTKKNAA + SNNLSVEALNSNLFTALEGRTFDDIISNPPIAAGKELNTRLITESYEHLSKNGALWLV + AFHNKGGSTLKKVMETIFGNVTDVDKSGGVRVYKSIRK" + gene 912581..913423 + /locus_tag="Ccel_0791" + CDS 912581..913423 + /locus_tag="Ccel_0791" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_2936 cobalt transporter ATP-binding + subunit" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75169.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MPIIIENLHYTYMGGGPFEKNALHDVNIKIDDGSFIGIIGHTGS + GKSTLIQHLNGILKPTKGSVVINSIDTKQKNLKELRQQVGIVFQYPEHQLFEETVKKD + ISFGLLKQGLSQDEIDRRIISAMQSVGLDEDILEKSPFELSGGQKRRVAIAGVVAMKP + QILVLDEPTAGLDPRGRDEIFGYITKLHNESNMTIILVSHSMEDIARLTERVIVMNEG + TIFMDKPSKEIYAQPEQLEKIGLSAPQITYLMKKLKAVYPGINENIFTVEDAVKELVK + FLNH" + gene 913449..914252 + /locus_tag="Ccel_0792" + CDS 913449..914252 + /locus_tag="Ccel_0792" + /inference="protein motif:PFAM:PF02361" + /note="PFAM: cobalt transport protein; + KEGG: cth:Cthe_2937 cobalt transport protein" + /codon_start=1 + /transl_table=11 + /product="cobalt transport protein" + /protein_id="ACL75170.1" + /db_xref="InterPro:IPR003339" + /translation="MIRDITIGQYVPGNSLLHKADPRTKIILTFIMMIFIFLINTYWG + YLLLTLFTAITVVSSNIPVKFVLKGLKPILFIVVFAGIINIFMIKGTVIWSWGFLSIT + YEGINVAIKMAIRLFLLIITASLLTYTTTPIALTDAIENLLAPLKRIKVPVHEIAMMM + TIALRFIPTLLDETDKIIKAQSSRGADFDSGNMIERAKSFIPVLIPLFISAFRRADEL + ATAMEARCYRGSEGRTRMKQLRFTRFDVLVTGITVVFMTWVILMEYVFF" + gene 914279..915016 + /locus_tag="Ccel_0793" + CDS 914279..915016 + /locus_tag="Ccel_0793" + /inference="protein motif:TFAM:TIGR00071" + /note="TIGRFAM: tRNA pseudouridine synthase A; + PFAM: tRNA pseudouridine synthase; + KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A" + /codon_start=1 + /transl_table=11 + /product="tRNA pseudouridine synthase A" + /protein_id="ACL75171.1" + /db_xref="InterPro:IPR001406" + /translation="MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVG + VTGCSRTDVGVHAYGQVAHFLTDSKIPGDKFSYAINNLLPDDIVIKNSEEVPEEFHAR + YSAKGKKYRYLIYNSPHASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATG + GQVRSTVREIYGMEVYVKEDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIP + GIIAGLDRTKAGKTAPAQGLYLVQIYY" + gene 915262..915696 + /locus_tag="Ccel_0794" + CDS 915262..915696 + /locus_tag="Ccel_0794" + /inference="protein motif:PFAM:PF00572" + /note="PFAM: ribosomal protein L13; + KEGG: cth:Cthe_1783 50S ribosomal protein L13" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L13" + /protein_id="ACL75172.1" + /db_xref="InterPro:IPR005822" + /db_xref="InterPro:IPR005823" + /translation="MKTFMAKPQEVERKWYIIDAEGKPLGRLASEVASIIRGKNKPIF + TPHVDTGDHVIVLNAEKVLLTGKKLDQKLHRYHTLHPGGLKEIKYRHLMEKHPERAIE + LAVKGMLPKNSLGRQMYRKLKVYRGAEHNHQAQKPEVLDLNI" + gene 915715..916107 + /locus_tag="Ccel_0795" + CDS 915715..916107 + /locus_tag="Ccel_0795" + /inference="protein motif:PFAM:PF00380" + /note="PFAM: ribosomal protein S9; + KEGG: cth:Cthe_1782 30S ribosomal protein S9" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S9" + /protein_id="ACL75173.1" + /db_xref="InterPro:IPR000754" + /translation="MAKVYYYGTGRRKKSVARVRLVPGEGKFSINDRSLDDYFGLETL + KVIVKQPLTLTDTLTKFDVICKVIGGGFTGQAGAIRHGISRALLKADEELRPALKKAG + FLTRDPRMKERKKYGLKKARRAPQFSKR" + gene complement(916171..917475) + /locus_tag="Ccel_0796" + CDS complement(916171..917475) + /locus_tag="Ccel_0796" + /inference="protein motif:TFAM:TIGR01197" + /note="TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; + PFAM: natural resistance-associated macrophage protein; + KEGG: cac:CA_P0063 NRAMP manganese transport protein MntA" + /codon_start=1 + /transl_table=11 + /product="Mn2+/Fe2+ transporter, NRAMP family" + /protein_id="ACL75174.1" + /db_xref="InterPro:IPR001046" + /translation="MLDESYSPTMGAQAESLSVGRVIRSNSKPAGKIRTILKFLGPAF + IVSVAYIDPGNFATNISGGSKFNYNLVWVILWSNIMAIFLQSLSAKLGIATGYNLPQM + CGRVFSRKVNWCFWVVAELAAIATNLAEFLGCTLGLYLLFRIPMEIAGLITAVLTFFI + VYMGKYGQRVLEGIISVLVAVICISYTLEVFLAKPDWASAGLHVLMPSLPNGEAVMIA + VGMLGATVMPHVIFLHSQLVQQRNKGLTDDQKKRHFKLERLDITIAMNIAFIINASMV + IVSAAVFYRNGMVVETIEQAHRSLSPLLGAASSGAFGLALVASGLSSSVVGTMAGTTI + MQGFVGLNINDNVTRLVTMLPAMVIIILGINPMQALVLSQVVLSFILPVAIIPMLLIT + KRKDLMGSLVNKPATNVVGWIITSVILVANAVLLVLTFSGGV" + gene complement(917921..918400) + /locus_tag="Ccel_0797" + CDS complement(917921..918400) + /locus_tag="Ccel_0797" + /inference="protein motif:PFAM:PF01325" + /note="PFAM: iron dependent repressor; + KEGG: cth:Cthe_1402 DtxR family iron dependent repressor" + /codon_start=1 + /transl_table=11 + /product="iron dependent repressor" + /protein_id="ACL75175.1" + /db_xref="InterPro:IPR001367" + /translation="MEEISKFHTVRGYQLLMQNKNLLTSSMEDYLEMIYRNSLTESYM + RINTISELLNVAAPSATKMVQKLSKIGLLQYKKYGIIFLTDNGRELGKFLLDRHNIIE + SFLKNLGADEDVLVETELVEHSISAGTLSTLNMFNKFLSLNPELVQKFRDFCKQDIG" + gene 918624..919814 + /locus_tag="Ccel_0798" + CDS 918624..919814 + /locus_tag="Ccel_0798" + /inference="protein motif:PFAM:PF01979" + /note="PFAM: amidohydrolase; Amidohydrolase 3; + KEGG: cth:Cthe_1777 amidohydrolase" + /codon_start=1 + /transl_table=11 + /product="amidohydrolase" + /protein_id="ACL75176.1" + /db_xref="InterPro:IPR006680" + /db_xref="InterPro:IPR013108" + /translation="MLLIYNGKIITMAEVDYENGYILTDNGKIIAVGNDLSDVKEQLK + PDIHRIDANGGYVLPGLIDPHSHIGMWEDSVGFEGDDGNESTDPVTPQMRAIDAIYHA + DRSFVEAYESGVTTVVTGPGSANVIGGQFAALKTYGRCVDEMVVKHPVAMKVAFGENP + KTVYNDKHQTPMTRMATAAILRESLFKAKEYQEVWEDYKKNPEEYDKPDFDFKMEALL + QVLNRQIPLKAHTHRADDIITAIRVAREFNVDITLDHCTEGYLIKDILAEAGVPVIIG + PMLSDRSKIELKNYNLKTPGILSKSGIKVAIMTDHPCMPEQHLCLSAAIAAREGMSEK + EALRAITINAAEITGISDRVGSLEKGKDADIVIFDGNPLELKSTVQKTIINGVVVYER + KQNE" + gene 919807..920259 + /locus_tag="Ccel_0799" + CDS 919807..920259 + /locus_tag="Ccel_0799" + /inference="protein motif:PFAM:PF02367" + /note="PFAM: protein of unknown function UPF0079; + KEGG: cth:Cthe_1776 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0079" + /protein_id="ACL75177.1" + /db_xref="InterPro:IPR003442" + /translation="MNKIETHSFEETVEVGIKLGNILKSGDVIWLSGDLGTGKTALTN + GIAKALGIDAYITSPTFNLVNEYEGRLPLYHFDVYRISDPDEMFDIGFDEYIDDGGVT + VIEWGEQIAEILPSDIIRVTIEKNLQKGLDVREITIEFMGSRYSGYRI" + gene 920272..920982 + /locus_tag="Ccel_0800" + CDS 920272..920982 + /locus_tag="Ccel_0800" + /inference="protein motif:PFAM:PF00814" + /note="PFAM: peptidase M22 glycoprotease; + KEGG: cth:Cthe_1775 peptidase M22, glycoprotease" + /codon_start=1 + /transl_table=11 + /product="peptidase M22 glycoprotease" + /protein_id="ACL75178.1" + /db_xref="InterPro:IPR000905" + /translation="MRILAVDTSTNVASAAILEDEVIIGEYNCNRGKTHSQRLMPMVQ + HLMETAGLTVSDIDAFSASIGPGSFTGLRIGVTTIKAMAFAAEKPVISVHTLDALAYN + IPFAENLVCPMIDARNNQVFTAIYRFIGGKLERLTEYLGIPVTELADTLRVMDGKITF + LGDACSMHKEYFEHELGDRVRIASANTALAKASSVAILAGKAYREGKLESYYDMVPFY + LRKSQAERERENRKVKDD" + gene 920975..921427 + /locus_tag="Ccel_0801" + CDS 920975..921427 + /locus_tag="Ccel_0801" + /inference="protein motif:TFAM:TIGR01575" + /note="TIGRFAM: ribosomal-protein-alanine + acetyltransferase; + PFAM: GCN5-related N-acetyltransferase; + KEGG: cth:Cthe_1774 SSU ribosomal protein S18P alanine + acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="ribosomal-protein-alanine acetyltransferase" + /protein_id="ACL75179.1" + /db_xref="InterPro:IPR000182" + /db_xref="InterPro:IPR006464" + /translation="MINKLEIREMTADHIDGVMIVENLSFKIPWSRQAFVDEITANDM + AVYFVALCEGQVIGYGGMWKILNEGHITNIAVHPEFRRCGAASGIIETILETSGEKGV + KSLTLEVRKSNIAAQSLYKKYGFKPEGTRKGYYSDTGEDALIMWKNGI" + gene 921471..923876 + /locus_tag="Ccel_0802" + CDS 921471..923876 + /locus_tag="Ccel_0802" + /inference="similar to AA sequence:KEGG:Cthe_1773" + /note="KEGG: cth:Cthe_1773 peptidase S16, lon-like + protein" + /codon_start=1 + /transl_table=11 + /product="peptidase S16, lon-like protein" + /protein_id="ACL75180.1" + /db_xref="InterPro:IPR001984" + /translation="MPKLKELSYQDIDNRCKLESLPFKNTSQLDTYEGIIGQERASKA + MEFGLKMKMRGYNIYMSGPTGTGKTSFARQILNDTAANQKIPDDWCYIYNFSQPNQPL + AINLPVGTGKQFQQDMDEFTRIIKQEIANAFDNDQYEKEKSEIMDEYEGRKGELLDKL + SKDAEEHGFKVNTGSSGIYFLPIIEGRTISEEEFISLDEETKDKINEKTNILQQETLD + IIRKLKNNDKETEKKVSEWENRIALLALGVHIDDLKEKYKKFDVIQKYLEEVQQDILD + NLDDFKEEEVSEEQQQLIIPWMQKPETSISKYKVNVLVDNSGLTGAPVIFDFNPTYSN + LIGKIEYENEFGSVSTDYTKIKPGLFHIANGGYLVLQAKDVLSNPQAYEAINRVLKTK + KIIIENMKDQTGVVAVTAIKPQPIPVDLKVILVGSTSIYELLYEYEEDFRKLFKVKVD + FDEVMERNDENILKLAKFISGFCKKENTLHFDKTGVAKVVEYASWLVEDKNKLSTRFN + EIVEILCEACMWAEDDGAKLVKAKHVQQAISEKAYRCDRLDKRLLEMLNEGTIMVDTE + GSEIGQINGLTVMDMGDYSFGKPSRITASTYIGESGIVNVEREVDLSGTSHSKGVLIL + SGYIGQKYAQEFPLSLTASLCFEQMYGGVDGDSASSAELYAILSSLAEVPIKQSIAVT + GSVNQKGEIQPVGGVAYKIEGFFELCKLRGLTGEHGVIIPIQNVKNLVLRDEVIDAVK + KKLFHIYPVTTIDQGIEILTGKKAGEKATSGEYKSGTINYLVNEKLRRFAATVSYGGK + RKI" + gene 923982..924536 + /locus_tag="Ccel_0803" + CDS 923982..924536 + /locus_tag="Ccel_0803" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 + type 2; + KEGG: cth:Cthe_2731 ECF subfamily RNA polymerase sigma-24 + factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL75181.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MALTDAELVSQCVNGDSSAFEEIVIRYKRLVYSVVYKMISDKEE + VHDVCQEVFIRLYRSLDKYNPEFKMSTWIVKITSNLCLDTLRKKKQDTVTLDDAIGVS + SEIDTPEEALIKHQRSQLIKKAVDELPDKYKVLIVLFHNRGMSYEEMTKILNEPMSII + KNRLYRARLMLKEKLESARKEEVL" + gene 924533..925099 + /locus_tag="Ccel_0804" + CDS 924533..925099 + /locus_tag="Ccel_0804" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2732 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75182.1" + /translation="MKCNESQNYIMRFFDKDLNDIEQAKLKQHLKNCEKCSEEFSNLQ + QIFTEIEQDTDFLEPPEDFELQVMNRIEKEAYMYQKQKNDNVFMYNILLMAVSLIFVI + IFGSKMWEVLNKPIGLIQQTHMTFEIIKDFLSAAVSMIKGLAIAVVGVTASIYKTYYY + AYMILGILLLVTQGLFIRMVKEGNGGAQ" + gene 925096..925992 + /locus_tag="Ccel_0805" + CDS 925096..925992 + /locus_tag="Ccel_0805" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: nth:Nther_2043 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75183.1" + /translation="MNRKIRAILVSLLLLLFIPCIASASQFNFSNRLVFFQDKIITQH + SMGNITIVIGDADIQTNVNGSVIVIFGKANIKGMVGGDLVSVFGDVYIKDKSLIQGNV + VSLGKLKKDNNVIISGTKVNIDVDIISLFKSNGIIINGLIILSLITLAAGLILISIFS + GRYRVMSYKMSKGLTRRMIMGGLAVTGFTIIVIFLLFLIVAPIFYVLFLMFADIVASI + FVGTLIFKGNYDRTTIYLQFLVGQILVSILKIVPLILIPSGSYTAMLIYGICFIILQY + SMAFFGIGTIIDTGFGKKTSRV" + gene 926099..926356 + /locus_tag="Ccel_0806" + CDS 926099..926356 + /locus_tag="Ccel_0806" + /inference="protein motif:TFAM:TIGR01003" + /note="TIGRFAM: phosphocarrier, HPr family; + PFAM: phosphoryl transfer system HPr; + KEGG: cth:Cthe_2735 HPrNtr domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="phosphocarrier, HPr family" + /protein_id="ACL75184.1" + /db_xref="InterPro:IPR002114" + /db_xref="InterPro:IPR005698" + /translation="MISTKVTINCPAGLDSKAAALLVQKVSKYSSSIWLEKGERRANA + KSLLGLLSLGVERNAAITIITDGEDEKKAADEISEYFTVGF" + gene 926527..928368 + /locus_tag="Ccel_0807" + CDS 926527..928368 + /locus_tag="Ccel_0807" + /inference="protein motif:TFAM:TIGR00194" + /note="KEGG: cth:Cthe_2737 excinuclease ABC subunit C; + TIGRFAM: excinuclease ABC, C subunit; + PFAM: Excinuclease ABC C subunit domain protein; + helix-hairpin-helix motif; excinuclease ABC C subunit + domain protein; UvrB/UvrC protein; + SMART: Helix-hairpin-helix DNA-binding class 1" + /codon_start=1 + /transl_table=11 + /product="excinuclease ABC, C subunit" + /protein_id="ACL75185.1" + /db_xref="InterPro:IPR000305" + /db_xref="InterPro:IPR000445" + /db_xref="InterPro:IPR001162" + /db_xref="InterPro:IPR001943" + /db_xref="InterPro:IPR003583" + /db_xref="InterPro:IPR004791" + /translation="MFDIQEELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYF + QQSANHPPKVQAMVSKVSEFEYIVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPY + IKVTLNEEYPRILKTRRVEKDGARYFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRD + IGKTRPCLNYHMKQCLAPCQGGVNRDEYREMMKKICRFLGGQYDEIINDLRIQMETAA + EQLDFEKAAQLRNKITSIKQLSESQKVLFTDLEDRDIIGYSADSTDLCIQVFFVRNGR + VIGREHFIFEGEANEDKGYSLSTFIKQFYTKVQYVPSEIVLQSEVDDSETIAKWLTEK + RGFKVALRVPQRGDLVKLVHMVSENAEITLKLHRERQSREGTVHSEGMAQLVKLLGLE + EAPARIESYDISNTGSSEIVASMVVFENGRPARQEYRKFKMKSIEQQNDYGSMQETLF + RRLNRAKREKEEGTENAKFSKLPDLILVDGGSNHVNAARQVVEELGYNFKIAGMAKDD + RHRTKSLVYMGNEYELATNMPLLRFITEIQDETHRVAVEYNRKLREKRYVRSELDEIE + GIGQTRKKALIKHFKSVAAIRKADIAQLQEVNGISEKIAKNIYEYFN" + gene 928390..929091 + /locus_tag="Ccel_0808" + CDS 928390..929091 + /locus_tag="Ccel_0808" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: cth:Cthe_2738 metallophosphoesterase" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL75186.1" + /db_xref="InterPro:IPR004843" + /translation="MSIYTIADLHLALGIDKPMDVFGGRWSNYMEKLKENWVSNVADN + DTVVIPGDVSWATYIESAYDDFKFIEDLPGKKIISKGNHDYWWTTSSKLNKYLEEKNL + STISFMHNNAFQFEGIAVCGTRGWKGPGEDDFKKDDEKIYKREIERLELSIKAALKLK + LPRMLVFMHYPPVTAKSPMTGFIDIMKKYNINECYYGHLHGEGIKGAVEGEYEGINLK + LVSADYLNFKPFKIK" + gene 929329..930615 + /locus_tag="Ccel_0809" + CDS 929329..930615 + /locus_tag="Ccel_0809" + /inference="protein motif:TFAM:TIGR00115" + /note="TIGRFAM: trigger factor; + PFAM: peptidylprolyl isomerase FKBP-type; trigger factor + domain protein; trigger factor domain; + KEGG: cth:Cthe_2739 trigger factor" + /codon_start=1 + /transl_table=11 + /product="trigger factor" + /protein_id="ACL75187.1" + /db_xref="InterPro:IPR001179" + /db_xref="InterPro:IPR005215" + /db_xref="InterPro:IPR008880" + /db_xref="InterPro:IPR008881" + /translation="MKVKVENVEKNVVQLEIEVDTAKFEEGMQQSYLKNVKKFNVPGF + RKGKAPRNIIERYYGEQALYDDAINIVCSEAYDNAIEENNINPVDRPEIDIVQIGKNQ + NLIFTAKVTVKPEVELGAYMGVEAKKAEANVTDEDLENEFNKVVEKNARLVSVTDRPI + QSGDTAVIDFEGFIDSVPFEGGKGEDYSLVIGSGTFIPGFEDQLIGKNIADDVDVNVS + FPEEYGKEELNGKEALFKVLIKEIKVKELPTVDDEFAKDISEFDTLEEYKNDLRNKLE + ESAKSKAERDNEESVIQAVVGNATVDIPNVMVEKHIDAMARDFDMRLRYQGLDLQRYL + EIMGTDFEGFREQFRERAANEVKIQLVIEKISKVENVEATDADVEEEITKTAEAYKQP + VEELKKTLRPEDLEYVKNDIAFRKTIKILVDNAKLN" + gene 930721..931305 + /locus_tag="Ccel_0810" + CDS 930721..931305 + /locus_tag="Ccel_0810" + /inference="protein motif:TFAM:TIGR00493" + /note="TIGRFAM: ATP-dependent Clp protease, proteolytic + subunit ClpP; + PFAM: peptidase S14 ClpP; + KEGG: cth:Cthe_2740 ATP-dependent Clp protease proteolytic + subunit ClpP" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent Clp protease, proteolytic subunit + ClpP" + /protein_id="ACL75188.1" + /db_xref="InterPro:IPR001907" + /translation="MSLVPMVVEQTNRGERSYDIFSRLLNDRIIVLSDEVNDATASLI + VAQMLYLEAQDPDKDIQFYINSPGGSVASGFAIYDTMQYVKCDVSTICMGMAASMGAF + LLAAGEKGKRFALPNSEIMIHQPLGGARGQATDIKIHAENILRTRDKLNKILSERTGQ + PLDKIEKDTERDFFMSADEAKAYGIIDDIMVRRK" + gene 931319..932614 + /locus_tag="Ccel_0811" + CDS 931319..932614 + /locus_tag="Ccel_0811" + /inference="protein motif:TFAM:TIGR00382" + /note="KEGG: cth:Cthe_2741 ATP-dependent protease + ATP-binding subunit; + TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit + ClpX; + PFAM: zinc finger C4 domain protein; ATPase AAA-2 domain + protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent Clp protease, ATP-binding subunit + ClpX" + /protein_id="ACL75189.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004487" + /db_xref="InterPro:IPR010603" + /db_xref="InterPro:IPR013093" + /translation="MTRYDEKKQLKCSFCGKSQEQVKRLVAGPGVYICDECIELCSEI + IEEEFEDTKIDAEVSEIPKPKEIKEILDQYVVGQDAAKRSLSVAVYNHYKRINSDVKT + TDIELQKSNIVMLGPTGSGKTFLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILL + RLIQAADYDIEKAEKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTLAS + VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESSKDK + DVGQLLKDILPQDLLKFGLIPEFVGRLPIVVTLQSLDKKALVQILTEPKNALVKQYQK + LFEMDDVLLEIQDEALEHIAEKAIERNTGARGLRAILEEAMLGVMYDIPSMTNVEKCI + IGKEVIAEHSEPELILNENRKSLKKAGAKRTRVKKESVS" + gene 932762..934444 + /locus_tag="Ccel_0812" + CDS 932762..934444 + /locus_tag="Ccel_0812" + /inference="protein motif:TFAM:TIGR02902" + /note="KEGG: cth:Cthe_2742 endopeptidase La; + TIGRFAM: ATP-dependent protease LonB; + PFAM: magnesium chelatase ChlI subunit; AAA ATPase central + domain protein; peptidase S16 lon domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="Sigma 54 interacting domain protein" + /protein_id="ACL75190.1" + /db_xref="InterPro:IPR000523" + /db_xref="InterPro:IPR001984" + /db_xref="InterPro:IPR002078" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR008268" + /db_xref="InterPro:IPR008269" + /db_xref="InterPro:IPR014251" + /translation="MLTTTLFIIQFFFSVVIGIYFLSLLKNQQGNKSTIEKESRKELE + KLRRMRDIHLTEPLSEKTRPASLSDIVGQEQGLKALRAALCGMNPQHVIIYGPPGVGK + TAAARVILEEAKKNSMSPFRKEAKFIEMDATTLRFDERGIADPLIGSVHDPIYQGAGS + YGVAGIPQPKQGAVTKAHGGILFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYSAED + SNIPSHIHDIFQKGLPADFRLVGATTRVPDEIPAAIRSRCVEIHFRSLRADEICKICE + NAAAKGGFILNQGCSELVARYAQNGRDAVNIIQIAGGVSMVENRSTIDIKDIEWVIEF + GHYSPRIEKKVSPINQIGCINGLAVFGESTGMVIDVEVTAISVARGTGNIRITGIVEE + EEMDNRGHKLKRTSSAKASVENVLTVLRKYMDVDFKNYEIHLNFPGGIPIDGPSAGIA + IATAVYSAVKNIPVSGELAMTGEISIKGKVKPVGGVVAKVDAAKAAGIKKVFIPKDNY + QEIFEDMDIDVIPVENINEVMKAVFDIDLVEKKDETVPNGSAPITVLTAQGT" + gene 934915..935106 + /locus_tag="Ccel_0813" + CDS 934915..935106 + /locus_tag="Ccel_0813" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75191.1" + /translation="MKRLRSPVAWAAFVALILFVLKTFNLLAPIGLSEDSFKELTTLI + FAALTAFGIFNNPTDKDSF" + gene 935299..936327 + /locus_tag="Ccel_0814" + CDS 935299..936327 + /locus_tag="Ccel_0814" + /inference="protein motif:TFAM:TIGR00329" + /note="TIGRFAM: metalloendopeptidase, glycoprotease + family; + PFAM: peptidase M22 glycoprotease; + KEGG: cth:Cthe_2743 O-sialoglycoprotein endopeptidase" + /codon_start=1 + /transl_table=11 + /product="metalloendopeptidase, glycoprotease family" + /protein_id="ACL75192.1" + /db_xref="InterPro:IPR000408" + /db_xref="InterPro:IPR000905" + /db_xref="InterPro:IPR017861" + /translation="MDTLILGIESSCDETAASVVKNGRYIMSNVISSQIDLHKKYGGV + VPEIASRKHVELIMPVVHQALEEAGVSLKEIDAVGVTYGPGLVGALLVGLTAAKAIAF + AADKPLVGVHHIEGHIAANYLQEPELEPPFICLVASGGHSHIVHVKSYSEFEILGQTR + DDAAGEAFDKISRAIGLGYPGGPLIDKNALTGNSKAIQFPRVTFDDGSLDFSFSGLKT + AVLNYLNRMEQTGEKINIPDVAASFQQAVVDVLVRNTIAAANMKNIDKIALAGGVAAN + TQLRNDMKVTAEKQGIKVMYPGLTLCTDNAAMISCAAYYEYKSGKRAGMDLNAVPGLK + LSTGISKD" + gene complement(936615..937322) + /locus_tag="Ccel_0815" + CDS complement(936615..937322) + /locus_tag="Ccel_0815" + /inference="protein motif:PFAM:PF01464" + /note="PFAM: Lytic transglycosylase catalytic; + KEGG: cth:Cthe_2744 lytic transglycosylase, catalytic" + /codon_start=1 + /transl_table=11 + /product="Lytic transglycosylase catalytic" + /protein_id="ACL75193.1" + /db_xref="InterPro:IPR008258" + /translation="MNIDIDAIFKQKLAEIENRLAGIPGMNIGSSVNSEIPFQKYLDD + ATQSGLINPLSGLEDNPLKDTSLTDLLGQLDNSNTGNILKARTALANSKAYIPTDISE + LMNLINSCIDSASAKYGVDKELIRAVIKQESSFDTTAISKAGAQGLMQLMPGTAEGLG + VKDPFDILQNIDGGTRYLKYQLERFDGDISLALAAYNAGPNSVDKYGGIPPYTETQNY + VKNVTDYYNQYKMSASR" + gene complement(937428..937733) + /locus_tag="Ccel_0816" + CDS complement(937428..937733) + /locus_tag="Ccel_0816" + /inference="similar to AA sequence:KEGG:Cthe_2745" + /note="KEGG: cth:Cthe_2745 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75194.1" + /translation="MKHKKCCKSCDRGISLHLTNDILCKYHGVITPDYVCFRYKESMG + PTSSKEASFKCIHCENFIVHIDSPNENIGRCKLFSERNFDGTAKNACSKFSKKILIS" + gene 937920..938402 + /locus_tag="Ccel_0817" + CDS 937920..938402 + /locus_tag="Ccel_0817" + /inference="protein motif:PFAM:PF04167" + /note="PFAM: protein of unknown function DUF402; + KEGG: cth:Cthe_2746 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF402" + /protein_id="ACL75195.1" + /db_xref="InterPro:IPR007295" + /translation="MNKPSIFRTRYIPFETVDISSDELLYRDEELLITRWKAIKPRKD + ISGGISYTFLKEGIKISRFYDADKRFAYWYCDIIDVEYDKGNDRFTLIDLLLDVKLMP + DGTMQVLDADELAEALERGLITQEKVCSSLKKMDNILQQIYNGNFPPAICLEESYWKV + " + gene 938467..939324 + /locus_tag="Ccel_0818" + CDS 938467..939324 + /locus_tag="Ccel_0818" + /inference="protein motif:PFAM:PF02811" + /note="PFAM: PHP domain protein; + SMART: phosphoesterase PHP domain protein; + KEGG: cth:Cthe_2747 PHP-like protein" + /codon_start=1 + /transl_table=11 + /product="PHP domain protein" + /protein_id="ACL75196.1" + /db_xref="InterPro:IPR003141" + /db_xref="InterPro:IPR004013" + /translation="MEKIIDLHTHSTASDGSMSPAELVRHAKAIGLAAIALTDHDTVD + GVEEAINEGKRSGIEVIPGIEISVRYKPEMHILGLFPDCDKYINIRSELYVVKKGRQD + RNRKIINRLNELGIEITEDEVKNVAMGDITGRPHIARVLVAKEYVKNINEAFDIYLSK + DGLAYFQRFELEPADGIKAIRKSGGIPVIAHPVFLRKNYNEMDELLGELKGYGLAGIE + AYYSENTKEDTGNFLRLAIKHGLVVTGGSDFHGIFKPGIELGHGSGGLKVPYELLDKL + REFQNNMNK" + gene 939487..939951 + /locus_tag="Ccel_0819" + CDS 939487..939951 + /locus_tag="Ccel_0819" + /inference="protein motif:TFAM:TIGR00086" + /note="TIGRFAM: SsrA-binding protein; + PFAM: SmpB protein; + KEGG: cth:Cthe_2748 SsrA-binding protein" + /codon_start=1 + /transl_table=11 + /product="SsrA-binding protein" + /protein_id="ACL75197.1" + /db_xref="InterPro:IPR000037" + /translation="MVKEAVKIVAQNKKARHDYFIEETIEAGIVLSGTEVKSVRQGKL + NLKESYASIVEGEVIVSGMHISPYEQGNIFNKDPLRDRKLLLHKSEINRLIGLTQQKG + YTLVPVQAYLKRGMVKIELGVARGKKLYDKRDDIAARDAKREIDRKMKEQLR" + gene 940698..941834 + /locus_tag="Ccel_0820" + CDS 940698..941834 + /locus_tag="Ccel_0820" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: chy:CHY_1702 prophage LambdaCh01, site-specific + recombinase phage integrase family protein protein" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL75198.1" + /db_xref="InterPro:IPR002104" + /translation="MARKAIERNISYDDVKKLYYVTMDYGKDSTGKRVKTTKTFEKKK + DAQTALKNFEADKIKQNLVFPSVLTVENWLTYWLDDIKAIKCEETTLYGYRNIINKHL + IPKLGNYKLQELNPTILNKYFKGKLDEKLSQNTIRKHYDLLKDTLKTAVDEEKILKNP + LNKVPPIKVQKNEKNFYNVEQLKTLFTIVENDRMEIVVKLAGMLGLRREEIAGLKWDN + IDLENRIITIAEARTQAGKKTVAKGTKNSSSHRTLYAPEEIINLLTSIKTTQEEQKRL + LGEAYKDEGYIMAWENGEPYRPNYLSDLFKKIIDDNKLPSLRLHDLRHTFASIANELG + TNLYDISKALGHSQVGTTSQIYTHMFDATHKKAISKIADVMTAK" + gene 941888..942139 + /locus_tag="Ccel_0821" + CDS 941888..942139 + /locus_tag="Ccel_0821" + /inference="similar to AA sequence:KEGG:Mfl667" + /note="KEGG: mfl:Mfl667 ribose ABC transporter permease + component" + /codon_start=1 + /transl_table=11 + /product="ribose ABC transporter permease component" + /protein_id="ACL75199.1" + /translation="MEETLKLILDKLNSMDSDIKDIKNNVRNLEKHVFIIENKQSEDS + KALYDGYSQTLENTVEIKKDIKDIKETLNVHEVKLLKVK" + gene 942458..943231 + /locus_tag="Ccel_0822" + CDS 942458..943231 + /locus_tag="Ccel_0822" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_2996 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75200.1" + /translation="MENQIQPIGNVNRIKINKKKMVLLIIVIVSLVVVICYLVSVNNK + ISLYETQYTNKAKQIVADYNLKDANISMKYNGKYDGYRSYDLVVESNSFEKLEDKKKY + NLVKSLETIDVSDSSFLVLKRVISGANTYQNNVLYSNVLDKNYDEYYTDGIKHNNGNI + ENSATSTYEKEPSDDDKAFAWTAAKKEVKERLKSPSTADFPFSYNEQYIKEVETKTFI + IKSYVDAENSFGANIRSNFIVKIKKTGENTYTVIDVKIS" + gene 943381..944427 + /locus_tag="Ccel_0823" + CDS 943381..944427 + /locus_tag="Ccel_0823" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75201.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(944862..946011) + /locus_tag="Ccel_0824" + /note="ribosomal slippage" + CDS complement(join(944862..945731,945733..946011)) + /locus_tag="Ccel_0824" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75202.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSACRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 946068..946772 + /locus_tag="Ccel_0825" + /pseudo + gene 946774..947808 + /locus_tag="Ccel_0826" + CDS 946774..947808 + /locus_tag="Ccel_0826" + /inference="similar to AA sequence:KEGG:CLD_2462" + /note="KEGG: cbb:CLD_2462 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75203.1" + /translation="MELYIYNRSLDLIGLIDVFDSLRWRRRYFQPGEFELHLKYTAEN + VKLLEEDNIIARRDANEAGIVEGISIDKDELAVKGRFLSSLTERRIVIKETILNTTAE + LAMRTLVRNMNKIPFLELGELKNYTETVDLQVTYKNVCTTLTKIAKVSNIGYRVRFNR + KNKELLFECYKGVSRSASQNVNPRAIFSEEFENVTDSKYSLENENYKTVAIVGGEGEG + TARVIVTVGDTTGLERRELFVDAKDIQKGDLTDNGYKALLIQRGIEALAQAVKNETFE + SNVNLQSSLVYKKDFNLGDIVTCTNRAWNKAIDVRITEIEEVYEKGIITLTPTFGSPL + PELKDILKGE" + gene 947812..949572 + /locus_tag="Ccel_0827" + CDS 947812..949572 + /locus_tag="Ccel_0827" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbb:CLD_2071 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75204.1" + /db_xref="InterPro:IPR002173" + /translation="MQKSSFFNSINGDRKYNASDYAAYFGSFIGNGVYPNPGNNLAVT + AVGGMNISVAAGKAWINGYYYENTGTFNISIDAADGVLKRIDRIVLRLDHLNRQIVLS + VLKGTPASTPTASLLTRTSDIYELGIADILINNGDTAILQGNITDQRLNNDLCGIVHG + TVEQVNTSEIFNQYQAALDSFKKEKYVDFITWVENLKDILDENTAGNLLNSINDNTSN + LDAHSSDYVRQPFSGKVDNNSTSTDYKVTLTPPLTAYVDGLPITIIPNVDCGVSPTLN + ICGLGTTPLLDADGVALTAGAMKANKPYSFVRVGNNFFIRNGSGGKPLGVNYTGSCKI + VAETATKGYIECYSSGTLSFSDRLPQTVDVFLAGGGGGGSSSGNSYVGGGGGAGGYTK + TFYKVKPSTPVAIYVGSGGTAGSSGGSSTYTGLTSASGGGGATSSNGANGGSAGGGGM + VLSTSAWSSGGIAGSNGGNGTPPHYNTGSSGAGSNGTGQGTPTTDFFGRIHAAGGAGG + AGGNTSTGVGASGDPGTSSFTAGSGSAGQTGSVGVMGCAGGNGGGGYGGGGGGGGYGS + STRGTGGTGGSGVVIVRWGY" + gene 949584..949877 + /locus_tag="Ccel_0828" + CDS 949584..949877 + /locus_tag="Ccel_0828" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75205.1" + /translation="MENLRCAILAQDGITVENIIIADQSFAYSIGAIMCGNVPVGIGD + TYQDGYFYRDGVKLIAEKTEIEKLQKMVDTLILDNLNMQAQIDTLITSNLQEV" + gene 949881..949997 + /locus_tag="Ccel_0829" + CDS 949881..949997 + /locus_tag="Ccel_0829" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75206.1" + /translation="MFERLNFLHKTNELTEKQLDIAVSKAWITKEEKMKIIG" + gene 950124..950450 + /locus_tag="Ccel_0830" + CDS 950124..950450 + /locus_tag="Ccel_0830" + /inference="protein motif:PFAM:PF08239" + /note="PFAM: SH3 type 3 domain protein; + KEGG: NLP/P60 family protein, putative" + /codon_start=1 + /transl_table=11 + /product="SH3 type 3 domain protein" + /protein_id="ACL75207.1" + /db_xref="InterPro:IPR013247" + /translation="MGTRIISRKFILLAVLVTMLVINVLFPLSQVNAQTWVLTVTTEG + SNLNVRSGPGTNYSVIGQFANGTDVTWEDDDGKSSGEWAYVKGIGTNGKTISGYCYQW + YLIHEN" + gene 950550..950801 + /locus_tag="Ccel_0831" + CDS 950550..950801 + /locus_tag="Ccel_0831" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75208.1" + /translation="MAGECGYHCLNEERIRTLEQNHSETKVYVKAIKEDLTEIKADLK + KGNGDSRTWSPIVLELIKALTTALTVIGAIVGALKLIER" + gene 950810..951505 + /locus_tag="Ccel_0832" + CDS 950810..951505 + /locus_tag="Ccel_0832" + /inference="protein motif:PFAM:PF02557" + /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin; + KEGG: bha:BH3665 N-acetylmuramoyl-L-alanine amidase (major + autolysin)" + /codon_start=1 + /transl_table=11 + /product="peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /protein_id="ACL75209.1" + /db_xref="InterPro:IPR003709" + /translation="MGSVKFKYTDETAVYPKLVNAVNILCAAKGQSCICTSGYRSLEK + QKNVNAQSLQCHKGAYQKPDGSVWTNDGKCWAAAYGKSNHCYCIAMDITDSWFQALTN + AELRKYGLVKPMSYEPWHVQLLEHNGINQKQKEAIRDSVLKGVNEEMEVKEFQSMAGL + TADGVAGPKTKDKAKEILRVCQNILGNEYCTAEEVIKATQTNPARWLGLLKTVKYFDA + FVMNIVKNMRGEK" + gene 951505..951678 + /locus_tag="Ccel_0833" + CDS 951505..951678 + /locus_tag="Ccel_0833" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75210.1" + /translation="MKEKIAKLIDVKTIVTIALVGAVIVFTAEGKIDPEKLTSMTTMA + VSFFFAVKLKDQK" + gene 951817..952572 + /locus_tag="Ccel_0834" + CDS 951817..952572 + /locus_tag="Ccel_0834" + /inference="protein motif:TFAM:TIGR00571" + /note="TIGRFAM: DNA adenine methylase; + PFAM: D12 class N6 adenine-specific DNA methyltransferase; + KEGG: ckl:CKL_4048 DNA methylase" + /codon_start=1 + /transl_table=11 + /product="DNA adenine methylase" + /protein_id="ACL75211.1" + /db_xref="InterPro:IPR002294" + /db_xref="InterPro:IPR012326" + /db_xref="InterPro:IPR012327" + /translation="MNSFIGWIGGKNYLKKEITKRFPEGMKRYIEVFGGAAWVLFYKD + SHADMEVYNDYNSELVNLFRCVKYHCGELQRELQYLLNSRELFNDFKSQYNMQGLTDI + QRAARFFMILKTSYGSNQRDFGCIKKNIANITEYLDRISERLAGVIVENRDFENLIKI + YDRLDAFFYLDPPYYGTEKYYQAEFKPEDHERLAKTLKSIKGKFLLSYNDCEYVRELY + RDFTIEEVQRNHNLLNRYKGKEKTYCEVLLRNY" + gene 952739..953512 + /locus_tag="Ccel_0835" + CDS 952739..953512 + /locus_tag="Ccel_0835" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75212.1" + /translation="MRKKLLSVILTVAVIFSFSTVSFAQGDMAKSSSSINRDTVITKD + NVNEILKMFGLDPSTFKQSDTPKEKAALTVGQLEDAIRTINEQLNDSAVNEKTNSGYS + SESKISVVKQKVDSSYISEPKVESALSASSTPVIGTVRLSKTTSPTSSYDLKYSTNAS + FARMDTTPVYKVYTGTNSPNVLLFDKAAPGNKNVLTSVNSVSSTNTSDMVTLNAQVVV + SYYLVIGVEGTELSIEKLMSTNTITAKQTWDTSYIPNQF" + gene 953728..954096 + /locus_tag="Ccel_0836" + CDS 953728..954096 + /locus_tag="Ccel_0836" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_3830 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75213.1" + /translation="MNENRPIIITMIGDLSILSGMLTIGAIIFPGYFAKLGFHMNPLP + IYSNIVMNIILTLIFITASVGLLWLKKWGYWLTIVYHFFYLLINVIWHLQNKQVPLSL + TIVVALVIIIDIIPYRKYFT" + gene complement(954247..954702) + /locus_tag="Ccel_0837" + CDS complement(954247..954702) + /locus_tag="Ccel_0837" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tex:Teth514_0698 recombinase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75214.1" + /translation="MADMLSEYAMSRSTVISTNIKDFENETAGIQTKINNTVNAIANG + MFHPSLKQKMDELEARKSALVISIEEAKRQAEINSPSRDFIRSYLEQDSDIKNKSPED + QKRIIQTYVCRVVVFDNHIETDTIVSFDGGGEPYQSKITTDISGYRHGQ" + gene 954846..954929 + /locus_tag="Ccel_0838" + /pseudo + gene complement(955171..956320) + /locus_tag="Ccel_0839" + /note="ribosomal slippage" + CDS complement(join(955171..956040,956042..956320)) + /locus_tag="Ccel_0839" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75215.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRDFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSASRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene complement(956466..958220) + /locus_tag="Ccel_0840" + CDS complement(956466..958220) + /locus_tag="Ccel_0840" + /inference="protein motif:PFAM:PF00150" + /note="PFAM: glycoside hydrolase family 5; cellulosome + protein dockerin type I; Carbohydrate binding family 11; + KEGG: cth:Cthe_1472 carbohydrate-binding family 11 + protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 5" + /protein_id="ACL75216.1" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005087" + /translation="MKKILALIISCSIIMSFLPMSVYGAINSQDMVKKMGIGMNLGNT + FDAPTEGSWSKAAQEYYFDDFKQAGFKHVRIPIRWDQHTLANSPYTVDSNFLNRIETV + IDWSLSRGFVTVINSHHDTWLMDNYSQNIGRFEKIWEQIAQRFKGKSENLVFEILNEP + HGNITDSQINDMNKRILNIIRKTNPTRNVIIGAGYWNSYNSLSQLEIPNDPNLIATFH + YYDPYSFTHQWQGTWGTKNDMDAIAMVFNHVKKWSDKNNIPVYLGEYGVMGHSDRTSA + VKWFDFVSDQAISHGFSCGAWDNGVFGSVDNDMAFYNRDTRQFDKEILNAILTTGTTY + DWTPPTETNPDPPRTPATPAYGEQLIEDFEGAMQWAAYSGVDATASCKISSGKSNNGL + EITYAGSSNGYWGVVDNEHRNQDWEKWQKISFDIKSSNTNEVRLLIAEQSKIEGEDGE + HWTYVIKPSTSWTTIEIPFSSFTKRMDYQPPAQDGSETFDLYKVGSLHFMYSNSNSGT + LNIDNIKLIGLPEEQIGGKIGDVNEDGNIDAIDFALLKKYLLDSSISINKVNADINLD + GDINAIDFAKLKMMLLGD" + gene 958504..959406 + /locus_tag="Ccel_0841" + CDS 958504..959406 + /locus_tag="Ccel_0841" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: cbk:CLL_A3535 transcriptional regulator, AraC + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75217.1" + /db_xref="InterPro:IPR000005" + /translation="MINDNQSIFNPYIIEVYCINEKNVPYPVGTHFEERVVKFYELEL + ITGGNGTIITNGETAKTSKGDVFLREPGTIVEGYSGYYFIVIMFDAFYDISRKGIYVS + SSPYWITNEKEMLSNIGFFKDVPYKLTTYNYEIEYLFKSVFNEFIKKQQNCQLILKAH + LMNILNLLLVSPENTIKRINTRSFENNYEIIKSSQKYIDNNLHKDLTLLDLAERCGVS + KNFYCKIFKSIIGLSPFDYIIQSRMNTAKRLLTTTNMKISDISIMCGINNITYFHKLF + KKHVNMTPANFRERFGFTKAKYKL" + gene complement(959604..960274) + /locus_tag="Ccel_0842" + /pseudo + gene 960481..961630 + /locus_tag="Ccel_0843" + /note="ribosomal slippage" + CDS join(960481..960759,960761..961630) + /locus_tag="Ccel_0843" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75218.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTKIAAKYEIQPNQLTRWK + SEFIKNANRAFSVDADETEQLKQAHEAQIDELHRQIGQLTVERNWLKKKLNNSASRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRVKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 962504..963049 + /locus_tag="Ccel_0844" + CDS 962504..963049 + /locus_tag="Ccel_0844" + /inference="similar to AA sequence:KEGG:CLI_1565" + /note="KEGG: cbf:CLI_1565 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75219.1" + /translation="MNGLVRVDSESDIFEKYIGTPIELLFRYHNFAQPFDKFIDAQLL + IGMCMDNRKQLKIPNNFAYVLRSGGGNLRHSEFKISYAVAIGGVKCVAIIVHNKCGMV + NLFSKKDQFIRGMVENAGWDEKHAEEHFISFAPIFEIENELSFLMREINRLRIIYPKI + LFSPLYYNLDDNFLYLIADDN" + gene complement(963262..964020) + /locus_tag="Ccel_0845" + CDS complement(963262..964020) + /locus_tag="Ccel_0845" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: tex:Teth514_0698 recombinase" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL75220.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MQELCSKDNIYGKYCQYLNCREESIDAQIRAINEYDPRNEHSIV + KIYTAEAQSATTDNRPQFLQMMKDSATGLFNAVIVHKLDRFSRDRYDSAFYKRQLKKN + GVKLISVLENLDDSPESIILESVLEGMVEYYSANLAHEVMKGMKDTALQCRHNGGTPT + LGYDVLPDKSYAVNESEARITRTIFEMYASGHSYNEIIDTMNREGYRSKFGRSFGKNS + LHDILRNEKYTGTYIFNRTGCRFCRERCQRPTVN" + gene 964057..965040 + /locus_tag="Ccel_0846" + CDS 964057..965040 + /locus_tag="Ccel_0846" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_3763 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75221.1" + /translation="MNTKFKKVVAILVVALTALSLSITSFAWPANKWNSINGNGQGTG + HKSMIENLSSAKFTCPAAPSDTDYATHKEIVALAAYYTDALDIMDAAATTNGVYSPYH + AKTNYTLTEVKQHAKFLYELARRRLVLGKKLDLVSSNYSQTKTYYYDAYIEVDTKNRI + IDDLSVLNDELADLGYDMDKIDNQGYMVLGVYFHLLEDIYCHRAILTSSQIDTSGFII + DSSHINYGTSTTTLAQKKTWLKNQIGTSGIPMIRLKDYLLSNGEGEKLLSVPNTTNLV + SAAGAYEDNPFFYASRYAAAYSATNTQLSSIMKDVDDTCNFSFSNNGLNFK" + gene complement(965367..965440) + /locus_tag="Ccel_R0028" + /note="tRNA-Ser4" + tRNA complement(965367..965440) + /locus_tag="Ccel_R0028" + /product="tRNA-Ser" + gene 965715..966326 + /locus_tag="Ccel_0847" + CDS 965715..966326 + /locus_tag="Ccel_0847" + /inference="similar to AA sequence:KEGG:DSY0716" + /note="KEGG: dsy:DSY0716 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75222.1" + /translation="MGILREIFGPSKKEIWKLLSDQIGSEFIEGGFLSADKVIAHVKD + WTVTLDTYTDSTGNSSTTYTRVRAPYINKDGFRFKIYRKGIFSEIGKAFGGQDVEVGF + PEFDENFIIKGNDEQKLRTLFANSKIRQLIEFQPDIRLEIKDDEGWFAKSFPEGVDEL + YFCVVGVIKDIELLKALFDLYAEVLDQMCLMGSAYQSNPNVEL" + gene 966667..966896 + /locus_tag="Ccel_0848" + /pseudo + gene 967741..968262 + /locus_tag="Ccel_0849" + CDS 967741..968262 + /locus_tag="Ccel_0849" + /inference="protein motif:PFAM:PF02357" + /note="PFAM: NGN domain protein; + KEGG: cth:Cthe_1362 NusG antitermination factor" + /codon_start=1 + /transl_table=11 + /product="NusG antitermination factor" + /protein_id="ACL75223.1" + /db_xref="InterPro:IPR006645" + /translation="MYWYVLFVRTGREENVKKLLSKRLDKDLFLPFVPLNERIFKKAG + TVNKNMEILFPGYVFIESKVASQEFVKMTNELMKSLQDIIRLVRYSDIEIAVRESERI + ILQSLYNNNNCIESSSGIIKGDKIYIIDGPLRGRESIVRHINRHKREAKIEIEFMGNI + RLVSVSLEIVQKL" + gene 968548..968877 + /locus_tag="Ccel_0850" + /pseudo + gene 968979..969686 + /locus_tag="Ccel_0851" + CDS 968979..969686 + /locus_tag="Ccel_0851" + /inference="protein motif:PFAM:PF00753" + /note="PFAM: beta-lactamase domain protein; + KEGG: bsu:BSU17090 involved in polyketide synthesis" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain protein" + /protein_id="ACL75224.1" + /db_xref="InterPro:IPR001279" + /translation="MNTNDPLMGKRKALYEIYMLNTKFINMVNNVYIIIDSQTRHTAV + VDPAWNIGLIKDTLNKLQAEVKVILLTHSHYDHTNLVNSMLKIYPAKVYMSKTEVDYY + NYKCNSLVPVQDGEVIKLGYTDIKCILTPGHTMGGMCFFVDGSLFTGDTIFMEGCGIC + SNLGGDAGDMFHSINRIKAEVSHDTKMYSGHTIDRQPGCTLGDLIKNNIYFSIDKKEL + FVQFRQRENQKRTYNFR" + gene 969788..970780 + /locus_tag="Ccel_0852" + CDS 969788..970780 + /locus_tag="Ccel_0852" + /inference="protein motif:PFAM:PF00698" + /note="PFAM: Acyl transferase; + KEGG: bay:RBAM_016920 BaeD" + /codon_start=1 + /transl_table=11 + /product="Acyl transferase" + /protein_id="ACL75225.1" + /db_xref="InterPro:IPR014043" + /translation="MQEKVVFMFPGQGSQYYNMGKQLFEQEPVFRKWMVYLDYICKKN + IGESVLDKLYDSNKKIADIFDRTLYTHPAIFMIEYSLAMALTERGIKPDYLLGTSMGE + FSSVAVSGVMDIEDVLECVLKQAQLFEAYCKEGGMLAIFNTPDIYENLPLLYKNSELS + SVNFASHFVVSGSNENLTAIREYMEAKNIICYVLPVTYGFHSHLIDPAAQVYKEFLKG + KRQNKPKIRFVSGMYGEAIEELNYDYLWDIVRKPIKFSKAISNMENSGPYIYIDLGSG + GTLDNFAKRNFSKQSRSVSFSIITRFNQELRNTDKLQTYLAENEATATLFKVKK" + gene complement(970817..970980) + /locus_tag="Ccel_0853" + /pseudo + gene 971277..973688 + /locus_tag="Ccel_0854" + CDS 971277..973688 + /locus_tag="Ccel_0854" + /inference="protein motif:TFAM:TIGR02814" + /note="TIGRFAM: malonyl CoA-acyl carrier protein + transacylase; PfaD family protein; + PFAM: 2-nitropropane dioxygenase NPD; Acyl transferase; + KEGG: gur:Gura_3105 malonyl CoA-acyl carrier protein + transacylase" + /codon_start=1 + /transl_table=11 + /product="PfaD family protein" + /protein_id="ACL75226.1" + /db_xref="InterPro:IPR004136" + /db_xref="InterPro:IPR004410" + /db_xref="InterPro:IPR014043" + /db_xref="InterPro:IPR014179" + /translation="MVAYVFPGQGSQAKGMGGELFGEFSYITKEADEILGYSIKELCL + EDPKEQLGQTQFTQPALYTVNALCYLKKLQETGEKPDYVAGHSLAEYNALFAAGVFDF + KTGLRLVKKRGELMSQASEGGMAAVIGLTEEKVKEILQNNNLTSIDIANLNTPTQIVL + SGLKDEIENAMPIFKAAGARNYVVLKVSGAFHSRYMEPSRKMFEEFIEQFEFNDIQIP + IISNIHARPYKKEAIKINLVEQITHSVKWTETVRYLMGKGVAEILQIGPGTVLTGLIR + TIQRESEPLIVDETEELNNDADKTVSVKKAGKGRKKKNEASSVDKVHDVKNENKKEEE + ISETVIEKSESAVKRMEEEEKEWSTAAAALGNPEFKKEYNLKYAYIAGGMYKGISSKE + LVVGMGRAGMMGVLGAGGVDFSEVENDIKYIQNRLANDKAYAVNLLYNPSNAKNEEKL + VDLLLKYNVKTVEASGFLSITPSIVKYRLKGLSKNNSGGVQISNRIIAKASRPEVIEA + FLSPAPERIVKKLLEENVITTEEAELSKNIPIADDICVEGDSAGHTDGSVLYTIMPVI + RKLRDEIKKRYGYSQRVRIGGAGGLGTPEGMAMALILGADFIVTGSINQCTVEARTSD + IVKDMLQKINVYDTAYAPATDMFEMGAKVQVLKKGLFFPARANKLFELYKQYNSFNEI + DSKTKAQLQEKYFKRSFDELYKDIKSRLPSEEIEKAERNPKYKMALAFKWYLMNAFNA + AIKGEEELKLDYQIQCGPALGAFNQWVKDTKLENWKNRHVDEIGLKLMMETAKYLKKS + VKQFS" + gene 973821..974507 + /locus_tag="Ccel_0855" + CDS 973821..974507 + /locus_tag="Ccel_0855" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: mxa:MXAN_2430 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75227.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MAIVNVKQLKKDYDLGRTKVPALRGVDLIIEKGEFVTIAGPSGC + GKTTTLNIMGCLDKATSGEVWINDCLINNLEEKKLNSLRLNTIGFIFQAFNLVPVLNV + YENVELPLLIIKNVSSNERRERVNYFLKAVGLFEHAKKKPSELSGGQRQRVAVARALV + TKPKIVLADEPTANLDSKNGMEIIELMHDISRKESTTFIFSTHDPKVMQKADRIIHME + DGLIKSEVSI" + gene 974504..975757 + /locus_tag="Ccel_0856" + CDS 974504..975757 + /locus_tag="Ccel_0856" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: afw:Anae109_0497 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL75228.1" + /db_xref="InterPro:IPR003838" + /translation="MRFLSVSWKNIHVSWRRSLTLGSFIFIATFILLFANSFIATMES + NMQGALVNALTGDVQVRSANTDEEDMFSFKGSWGKISYLNQQEVSNVKTVLDSKLKPE + DYGLHIRHNVFLQSEKEKLGSMIIGIDNKLQSYKDPVKLVKGKYISNTGSEIILAKDQ + ADKLKVNVGDKLDAFAKTKDGQPTKITFTVVGISNIEILSGFSYYPAYTDLKSAQELL + GLKDGEATDIIMYAKNRDNAKSMKNELKDTLDKTDIGSEKYKLSTWEKMGGYLMSTIN + IYIVIFYVFIAILMFIIIILIVNLVFMMGLERRQDIGTLRAVGYSKSKIVALFVTEIL + TITGIAFAIGAALAISLILVFSNVGLTVPSPWDLTIGKQLFLKFNIGQVLGIFGMLLG + ISFLSSYYPAYRSACLRPSEALREI" + gene 975785..977164 + /locus_tag="Ccel_0857" + CDS 975785..977164 + /locus_tag="Ccel_0857" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: ade:Adeh_3937 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL75229.1" + /db_xref="InterPro:IPR003838" + /translation="MGIIAKIALRNIFANRRRSILIGIVIFICAFLILVSNSMANGVE + FQVLKGYKNIQCAHVIVGWENLKKVNSSDATRLLFLTSNPSFELTKDAENQRAINTLN + EFLEKNKDKVDGYYPSIRRSISILYNGGEVQDSQFSLYGLNAKSSKLMIDSKAMSMYK + GELLSEDPNAICISKQKAEEDKLNLGDKVTLESINPDGSRGTLDCTIKGIYANGAGWD + NMYLFINEDTAKQLMKYKDGYFDLGRISLKNESDASEFAKDLDAALIKDGSKVLRAES + YLQASKLYPTMSKSLKGLCNLFILIFLVVISIGLRSSIRMNLFERMREFGTLRAIGYS + RRQCFSIIFLEVFFLSIIALSIACGIAAVLVNMLGKSGVYLGTGPLSYFGGERLYPSM + KPMDISTTFGIITLFTLLSTVSPALKLCYQNITNIMVKNMKKVKVWRTMFFGEKHSKV + KYDGLNKAV" + gene 977301..985478 + /locus_tag="Ccel_0858" + CDS 977301..985478 + /locus_tag="Ccel_0858" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014340 MlnB" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75230.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MRDVKKNNMKNTEKKSNRRKSADIGNLGDVAIIGMACRFPGAND + NEQYWYNIKNGVDCITEVPPGRWERDDFYSTNPDEPDKSISKWCGLIDNMDRFDNRFF + NISPREANNMDPNQRTLMEEAWHCIEDSGVPLNSLQSKKTSVFVGSTGIECYQSLDTP + GVSVEGYTGPGIYQFMLANRISYFWDLTGESKVVDAACASSSTALHEARCSILEGRSD + YALVAGLHMHLSSYKYLLWTKNRMLSADGRCKTFDQAADGLVAGEGVAVLLLQPLEQA + IKDKNHIYGVIKGSSINHGGKASSVSAPKVEAQSAVILDTYKDAGFSPETVTYIEAHG + TGTSLGDPIEVEALTQAFKKYTSEKGYCKIGSSKTNIGHLMSASGIAGICKVLLMFKH + KQIPPTLNVKIVNPIIDFDNSPFMLANSLTEWERKDKDIPLRAGSSSFGYGGVNVHIL + MEEYTETSPVIDKRNLEESHMFTLSAKSLKSLETHIGEWKRFLESENFGEYAINDICV + TLLNGRGSFPFRTGKCIKSLQDLKEFINNVSSDSFYKKTEQPWCLRIGDLSAEEGRKI + LWVLNKYEFFNRCIEITVEKLKEIIVDKDIYNNFYGDWKSDYENIYLFIINYAYAKAV + NRLGFTPSFITGQGNGVWVSLALSGIMSVEDILEIFLNQKSLADVSTARPNIPFGDFI + NERIIEPYLFDENYIRFLIDGAMMSFGVTKKVTVEDSRLGILLLKNEAVTPQQLEDAL + KGQKTSEGLLGEILVKKGYCPQYRIDRALRQQQILRGKVNEVLAHYVDKARLLNESQF + TFKKFMSEWDKVIKKVSGHDIFKMLHDEKLLEVNGERDSKDKLLLLIVLTSSIRKLNE + KWNFTDNKIFEEERFYELLDLISDEVMSKENIVELLTKADPNYGAIACKLNSFQGKMN + ARNRYKFIKQCNRNINEIADIECWIKALSETEMNVLDDEIRYLELGELGQTVSGEKGL + TLNLDKCENPEEALKETMMSLWLNGFDTDWQKIYPEGTYKKVALPCYSFEREKFGIAR + KFIRHEEAQAKGIKSVTAGPATSRITVRLDSKLYFKYIWKNSEIAEKAGISELGSILL + FDRNGELASLLGVNANKEGKEPCVLVMPGAEFSEQKGNIFTINPEKPDDYKKLLQTLK + ARQMLPKNIIYKWARTGVGFDQADMCSCLKDGIYSVLHLTKALAEQKDMNKVLLLFVH + SPAGKGGHPLYSGMGAFFKTLRLENPGFVYKSVEMEQDNKDDVAQRLINELTLGTVGA + LEVRYEGKQRLVKAMEEISGQITDGKIAIKEGGVYLITGGAGGLGLIMAERLAQRAKI + KLVLTGRSDLKQDKLLKLKELEALGSEILYIKADISMKDHAQRLIDEVKANFGKIDGV + IHSAGIYKSGFVIKKTPEEMETVFAPKIFGAAFIDEVTKDEDMDFFIMFSSISAVAGD + LGLSDYAYGNGFMDDFAELRETMRTKGMRKGRTLSINWPLWEYGGMQISKEESQRFFD + RTGLNMLPTRQGLEFFDSVTSMTNILQCLVAYGDREKVKKFIEASFRDTRNSGKGQAV + SMDPKVLLEKTEEFLKKIIADEIDLPVDQVDSDVSFEEYGIDSILIHNFNFKIEKHIG + PTSKTLLFEYKYLKDLTEYFVKNHAAELTKLFIRKEDQDENTEEYSDEVIQAYEEETL + KVKENISIEQDIAIIGISGRYPLADDLDEFWENLRNGRDCVTEVPPSRWDASEYYDPD + QDNAKYGKMYSKWGGFINDPEFFDALFFKISPKEAVGMDPQERLILQSVWSSIEDAGY + TGASIKEYVKNKDGRDVGVFMGATTNAYRLIAMDEWYKGNRVVPTANPWAIANRISFI + FDFHGPSIPVDTACSSSLTAIHLACESLQKGDCSMAIAGGVNLHLHPSEYVLRSQLKM + LSPTGRCHSFGAGADGYVPGEGVGSILLKPLNAAVEDHDHIYAVIKGTSINHGGRANG + FTVPNPNAQGDLILKALRNANIDARSISLVEAHGTGTSLGDPVEISGLAKAYREYTKD + NGYCAISSAKSNIGHLESASGIAGVTKLVLQFKHKKLVPSLHCEELNPNIYFDTTPFY + VQRQLSDWEQPKTIINGEEKTFPRRAAISSFGAGGTNVHLILEEYQMPVAKTCEEEPE + LIVLSAKNDERLAEYAKNILNKLKKESATSLGSEMKAGTTSHIKDEILQMVSGILDID + CDEIDPLEEMVGYGFEPVSLTALAEVINNRFECDISSDIFKEYPSVYSISEYISRYSR + DYNIGLYTDENSKESDISLKDMAYTLQVGREPMEERLAMVVSSVGELEEKLSAYCAGK + SIESTYTGRVKTGKAAKLLKAKAKEQEESIKGLLIGRQLHELAQLWVGGIDINWNRLY + ISSTPNRVSMPTYPFTKERYWLTDMEKDGDNVLTGTLSSSLHPMIDVNVSTLEEQCFK + KTLSGREHFIEDHVIEGNVILPGSAYIEMAIVAGNLSTNLGKVSKIINTVWERPLIIG + KRPEELFISLYPTDNNVEYSIWSGDPAGDRFIHAGGMVSYDYEQQAKEIEVINIDSVR + NRCTEHKKGEELYENLDKAGFNYQDGFKTIKNIWGNDKEALSRIILHQKLSADFNMYN + LHPSILDGAFQSITGIADDDVLNSGTVYLPFALGEVEIMGQLDKECYAYAVLTKAEKN + SNVKKFDIKILNSIGQTVVRIKDLSLRKYHKTASLNNEDEILLDIFRKLESGELEPDE + VDRMIGNIYKECV" + gene 985478..990283 + /locus_tag="Ccel_0859" + CDS 985478..990283 + /locus_tag="Ccel_0859" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014350 MlnC" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75231.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MIDNLSKKDIFEMVRHGKMKSEEALMQFKKIHAALTEPKDSEEI + VYYSPDMVREDVDPEVEKTLSGNILIFETDESLSGALKAEMGQRGNVVSVKPGTDFED + KGNNIFQINPGDRQHYLQLMNSLHTAGIMPDKVLHLWSGDEFSRKGEALKSSLTKGIY + STLFLLRELMEQKPKNPIKFLYGYFAKGDSIQPQHSAINGFIKSVAKENPIFVFKTVE + LRDLGLNEGTSPELLANILKYELNAEGANQVCYQGETRFIRQLNKFDFADNAESPLKT + VQEGVYLITGGAGGLGFEFAKHLAKTEKAKLVLAGRSELGIDKEQRLETLRDMGSEVI + YIKCDISKKYEAEMLIREAKAKFKGINGIIHCAGVIQDSFVLKKTADEMENVFSPKIY + GTINIDEASKNEKLDFFVLFSSTTAELGNTGQSDYAFSNSFMDYYARLRQKEGRPGKT + LSINWPFWKNGGMKVGQETLDMIRESTGMSPLDTEEGIKAFQLGLCSDKVQFLVVKGD + DKRIREMLQKTCTIREVRTATPTSMEDINGDELKTHTETYLKTILSKEIRLAPAKIDP + NEPMEKYGIDSVMVMNLTRELEKHFGDLPKTLFFEYQSISELTNYFIDKHFDKLIDKI + GSFLKPKAKQELTSPVERKAAAHVKRPRFASRVTREPSVEARTEDDDIAVIGLSGRYP + MAGNVEEFWENLKVGNDCITEIPQERWNYKKDFDPHKEKKGKSYSKWGGFIDDVDKFD + PLFFNISPKEAEILDPQERIFLQNAWHTFEDAGYPRDMISGKAVGVFVGVMYGQYQLY + GAEESMKGNNIGLQSSHASIANRVSYFFNLNGPSIGLDTMCSSSLTAIHLACESLKRN + ETEMALAGGVNVSIHPNKYIFLSQGKFVSSEGKCRAFGKGGDGYVPGEGVGSVLLKSL + KKAVADGDRIYAVIKSVSVNHDGKTNGYTVPNPNAQAKVISNALKKAKINPREISYIE + AHGTGTSLGDPIEIAGITKAFEEFTKDKQFCAIGSSKSNIGHLESAAGIAAVTKLLLQ + FKHKQLVPSIHSEELNPNISFTDTPFVVQNSLEEWKKPVINEKGISKTCPRVAGVSSF + GAGGANAHIIFEEYEGNLVIPKLKKEGSKIFVLSAKNVERLNEYAGKVYDYLCAKGGE + TDLTAVVYTLQLRRDEMEERLAIEVADMNELKAALGDYCNGKRNNENIYTGNIKESKS + QFEFLLNGIEGDRFVKTIIEEAKYSKLAQLWVAGIKIDWGLLYTTESATPVELPLYPF + SKEHYWVPISNTSKGEFGKKEKIHALLGVNISNLKEQMFKTEFIGDELLLSEHIVGGQ + KLLPGAAYIEMALVAAEISAESKVARIKNIVWAKPFVIGEKPKDIHISLHAKGGEVEY + EVFTATEFDRIVHSKGRISFSPHNNSVYGKGHIDIEAIKSRCFSVTSTEECYKRFSGL + GFDYGNSFRTIKELYSSNSESLACLELPESFDYTADCFTLHPLLLDGAFQTVSGLVGN + METEGIYYPFALGRLEIRARLQGKCYAWARSANGEGAGSKVRNFDIDIVDEAGNLIAG + IKDFSLKAAEKKNVGGKGDKEVMEMLNKLYEGELKSDQVAQYMGVKIVV" + gene 990276..1002386 + /locus_tag="Ccel_0860" + CDS 990276..1002386 + /locus_tag="Ccel_0860" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014390 MlnG" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75232.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MYKKKIANILKMIETRKIKPEDGLALLNELNASAPGDNLRTVYY + RTKLEADGELVKSPGTDLTGNIIIFDIDDVFYSSFKCIEWVGEKTVLVKPGKVFAQTD + DRVYEINPDETDDYRMLFKALKKVGITPEKIIHMWSKEAFGYESGTIGSQLNMGVYSL + FHISKSIMEQKHNGNVNLLYIYFMEKGQYQPVYAAASGVAKTVHRENPKFTYKTVGVE + LWPSLDSSNITDIISKELGTSSQDSEIYYKTGTRFVKRLEEFTTENTTGSLPIRQNGV + YLITGGMGGLGFIFAEYLAKKYKASLILTGRSGIDDVKALKIKELEAFGAQVMYAEGD + ISNSKDIENIITGAKNRFKEINGVIHSAGVVRDSFILKKSKADIDAVLEPKVYGTVLL + HKAFENISLDFFVMFSSTSSVKGNVGQCDYAAANSFMDNFSVMRAATYPTSKTLAINW + PLWKYGGMKVDEETVLQMKKNTGIVPLSTESGIKAFEEGLKAGVSELLVAEGDVKGIR + KTFNLKEQATGEVKTENLELGEKDLELLTQEAEQYLKEVFSKEIKLPPNKIKSKEPLE + QYGIDSVVIMEVNRELEAHFGELSKTLLFEYQSISELTQYFIKNHKQQLVEKIKGFNK + PQPVKHAKMVTEALQKPDESIINGQSRFIKTRENSTFEEIAIIGLSGRYPLSKNSDEF + WQNLKEGRDCITEIPADRWDYRKDFHPDKNKKGKTYSKWGGFIDDVDKFDPLFFNISP + NEARTMDPQERIFLETVWQTIEDAGYSRSRLSKTEVGVFVGVMYGQYQLYGAEESLKG + NVMALESSFASIANRVSYFFNFSGPSISMDTMCSSSLTAIHMACQSIRRGESSMAIAG + GVNITIHPNKYILLSQGKFASSEGKCRAFGAGGDGYVPGEGVGAVLLKPLSKAVEDSD + RIYAVIKGSSINHGGKTNGYTVPNPNAQGNVILDALKKSNIDPRTISYIEAHGTGTSL + GDPIEITGLIKAFGEYTKDKQFCAIGSVKANIGHLESAAGMASLTKVLLQMKYKQLVP + SILSETLNPNINFTESPFFVQRELAEWKQPVINQNGSEERYPRRAGISSFGAGGANAH + IIFEEYENSTNQYIDNNESKIVVLSAKKKDRLNEYAANLLEMFKKAKEQKEALELCDV + VFTLQIGREAMEERLALVVSDMDELIENLSLYCHGVQETGKLYTGNIKNQTDPLLEGK + EGDELIINALKNKETDRIAQLWVAGADIDWMLLYPIAVPRRISLPLYPFAKESYWIPK + GEKNIGLGAGQSLVPSLHPLIDRNESTLDEQCFKKILTGSEFYMRDHVIGGENMLPGS + VYIEMARAAGDLANKAGKVIAIKDIVWARPVTVSEEPKEITVSLFPEGNDVEFEISGV + TQSGNNIIHSQGKLIYGTLEDEPGHINIEEIKSRCTTDKDIDTFYDEFAKKGFNYGDG + MRAVKTLVCNTGEALSLLELPSEYEAAVDGFILHPVLVDGAFQTAAGITGIAKDGVMY + LPYAIGHIDIKGIPGKKCYAYVKFNESEVDLIKNNIWLLDEDGRIIAVIKDFVVRAAT + PNGEKAGVSMIYFKNSWESLAVEKVKELPVEGPVMLFDIDDLLFKSFVKRFGKERAIL + VTPGQAFADRGDNVYEIDPADGEDYVRLTKQLKNRGIIPAAIVHMWSKVEEESYKNKL + KYMQKMGVYSLLNLTKALMQFKGKTGVKILYIYKQGNAIEPLHAAIGGFAKTLSMENP + AFNLRAVGIKGSMDKNNLVQTICDEFGSDIFEAEVLYDCGERFVKHIKEFKEDGKDVT + LPIKEKGVYLITGGMGGLGVIFAQYLAKNFKAKVVLTGRSPLNPEKQKRLDEIKKFTQ + GSTYIPADISCKESVFELVSKIEASIGRIDGIIHAAGVIRDSFIFKKTVDEMEDVLAP + KVYGTVWLDEAVRDHNPGFFVMFSSTAGVTGNIGQCDYAYANSFMDNYAQARTDENPS + SKTLSINWPYWQDGGMQLDAQTISSIKADIGMVSLSTDSGIKAFEDGLKSSCPQLMVI + EGNREKIIKSFTTSSRETGEATKTIELDEKERAELKQKAQEFLKALLAAEIGLPQSRI + DEKEALEEYGIDSVMVMNLSRELGEHFGQIPKTLFYEYKTIAELSEYFTENYTEKLIE + KLGGTKKPQSVKVSPKTVGNELKTLRRNRFMNAENGESTNEIAIIGLSGQYPMAKTPE + EFWENLKSGKDCITEIPDNRWDHSLFFNPDKNIKGKAYSKWGGFIDNIYKFDPLLFNI + SPREAKIMDPQERLFLKCVWNAMEDAGYTKTYLEKNNNVGVFVGIMWGQYQMYGTDQS + LWEIGMIPGSSYASVANRVSYFFNLNGPSMAVDTMCSSSLTAIHLACDSIRKGESEMA + VAGGVNLAVHPCKYLMLSQGKFMSTDGRCRAFGEGGDGYVPGEGVGAVILKSLSKAVR + DGDYIYGVIKATALNHGGKTNGYTVPNPNAQGNLIAKALKKAKIDPSTISYIEAHGTG + TSLGDPIEIAGLMKAFCEYTKDTQFCSIGSVKTNIGHLESAAGIAGITKVLLQMKHKQ + LVPSIHTDILNQNIDFESSPFYVQRELSAWEQPVRKENGVERKYPRRCGVSAFGAGGS + NAHVIIEEYEDNNEEITNEDSEPQVIVLSAKTEEQLKIYAREINDFLLKALGPIQQDN + RECILTGIREDLIKQVASLLNVDEINIDINEKISEYGFDAIGFAELADGINRILGIEI + TPALFTECATVKAISEHLYKVCGEKAEALYSVPEIKNESTRSNASQLSLVNIAYTLQT + GREMMEERLAMVVSSIVEMQEVLSNYHNGKEDGRLYIGNKKAYKLSSGLLAEGEEAEE + FIKKTLTARKLDKLSQLWICGVDIDWKLLYNDIKPKKMSLPKYPFVEEECKLPIDQFK + PSPFEFRDEAVPIMESLTHLKAYILEKSWKKASGDIIPVDIKGTVVVLANDETAAMAD + KILENANIVIIKKGLSFETTSKTITFDYSDSNQGEKAAAGIINTVAGITGIIDLSDLY + ANSVDKTTGGLGRIKLLQTLIKNIKSDRLCILHITKGLHKFAGVPMSLAGADIAGLYK + MLGAEYRRVISKTIDTDNLDRNHIRQIVLNEWSMSDSYSEVCYRSGQRHVSVMSEIFR + KELGELKAGIKPMSPDPSKVVVITGGTRGIGAEVARHLVNNGARKLVLMGKQQFPKRE + TWNEIVNGSRADSSEAFKIKMVLELENKGAAVEICSGSLTEKTELQAYFEGIRKKLGK + IEGVIHCAGLAIADNPAFINKNVSDIEKVLEPKVAGLQTLHEIFAGDELSYFVLFSSV + SSTVPILGAGMSDYACANAFMDYFAAFRSSKGTVSYKSINWCNWKEIGIGEVASTSYK + NFGLFAYSTQDGLTLFDKMAENTENCCLMPCIADSDIFMPEGLLKAKQQSVNMVKGNP + AKENSVIIPGNAITESKGIMQKLVELFSAELAIDAEKLEGDVPFGDYGVDSVMLAELV + KKIEGFVGGKLDPSVLLEYPTLKQLNNYLSTNFSIEAVSNGEEEVTGSEDDIFTGNAM + SSSANTVSQVYSSTVKVPKLVDEDRAASRNKVAVIGMACNFPRASDKDKYWENLRNGK + NCITEIPKTRWDIDEYYTTLYQKGKSISKWGGFIEGIEYFDPKYFNLNEEDAPNIDPL + MRQLMEVSVQAVRDAGYEADELYGKKVGVYVGSRIGEYSSRAGEPTKNAIIGAGQNFI + GAHISHFLNLKGPNMVLDTACSSSLVSIHLACQGLLLNETEMAIAGGVDILLDEKSYI + MLSESRALSPDGKCHTFDEKANGFVPGEGCGVVILKSLEKAIQDGDRIYAVIDVSAVN + NDGHTMGITTPNPEAQSEVIMEALKKGNINPNSVSYIETHGTGTMIGDPIELRALTKV + FSQFTDEKQFCGVGSVKTNMGHLLSAAGIASFMKVVLSIQNKLLPPTLNCETPNPRFE + FKNSPLYPNTSLTEWKPREGTRRAGISAFGFGGTNAHMIVSECDTGLLKNYSMKRKPL + SPIEFNKKRYWREKIRFNTIGPEANIREKASPTHRVGSSMLKLEKKRI" + gene 1002407..1012984 + /locus_tag="Ccel_0861" + CDS 1002407..1012984 + /locus_tag="Ccel_0861" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014360 MlnD" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75233.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MTNYNEFEFYTTVRSDDYVVRDHRVHQVRIMPGVTFLDIVYRIL + NEEGFDLSGLELRNILFKEPIAVTEAFDKEICIKLKNSKEFGIITALSRKVKDDKILS + EEWDLNFQCELNTGKEKVSKTIDIEKLKKDAVKVIDTDEAYAHTRKINIHHFEFMKAL + GDIYIGEGYLMAEVHLSDLAKEFLGDFYLHPAYMDFSTLVPYKLKNLEIIEETVFKPF + IPIYIESFRAFDSLKDLCYIYVKEENVTLTKSQDVTYADWELFGEDGEVETIFKRMAA + KCIRSKELIEGLQEIGKDLKQKATRRQAEAPVQPAYDIPEKRNEADQGEMSQLELIRR + DLKELVARVQGVAVDKVSLDAGFYDQGLDSSNLLQLVQEIEYKVGQQLYPTLLFEYTN + ICELADFLVKEYGNGYKFSTKAQETEKPVIPMCFNRVWEKSDPKITTKKPENGTTVVF + DSNRKLYNALKSFDKNTLLVEPGESFKYNGTDIFVINPDSPEDYNSLTEILKEKGMLP + ERIVYLWNKEETDCSAEEVQVGIQKGVYSVFYLTRALMEQKLKNGVDTLYIYKTKKGG + QPYNSALSGFAKAANAENPKFTYRVIGVEGKETGNKLLDVIQRELNIEAGTDTDVLYK + DGARYSKHFKRIYAEQKPKATVVKENGVYLITGGAGGLGIIFAEHLASIAKVRLVLTG + RSKVDGKKENQFNKLERNGSRVTYISCDVSNRNEVNRLISDIKSKFGEINGVIHSAGV + IRDAYILKKTTEEMNEVFASKVYGTIYLDEALKNEKLDFFVLFSSMAAVVGNSGQCDY + AYANGFIDGYAGYREFLVSEGTRFGRTIAFNWPLWKNGGMGIDEQTLSMMRARGGIVP + LNTENGLKTFEDALTQPYSQLLVVEGEEEKVLNALRIGEEYCDVGEEKGEFITAGEIE + EIIKQSTAMKKADSVRPGNNDDDIAIIGFSGRYPMAKDVDEFWENLKNGKDCVSEIPA + DRYDWREYFDPDKNKIGKTYTKWGGFIDDADKFDPLFFNISPREAEVMDPQERMFLET + VWRAIEDSGNTKTQLSKGKTGVFVGVMWGQYNLLETEINGRPTLVNTIYASIANRVSY + TLNFRGPSIALDTMCSSSLTAIHLACDSIRKGESDIAIAGGVNLSLQPNKYVFLSQQK + FTSSEGKCRAFGDGGDGYVPGEGIGAIILKPLKKAVANGDRIYAVIKGSTINHGGKTS + GFTVPNPNSQAALMSDVLKKSNINPRTISYIEAHGTGTSLGDPIEIKGLLKAFGEYTN + EKGFCSIGSVKSNIGHLESASGIAGITKVLLQMKYKMLVPSIHTETLNSKIDFKESQF + YVQRELSEWKQPVIVENGVEKVYPRRAGISSFGAGGSNAHIILEEYGNNENLTDNPKT + AQIVVLSAKTREQLKEYAQKLYGFIGKNENSSLRLCDIAYTLMAGREAMDVRISVVAK + DLTELSEKLNCYIEERPTEGLYEGNLELTRPVGGDMNALLKEGDLDAIAKAWAGGISI + NPSALSEGYKPQIVSLPTYPFAKESFKIDMTKASNKTGNGFSALHPLVDINQSTLEEE + SFKKTLSQEEFFLKDHIVGGKTMLPGAAFIEMARAAGHIAGKNPVKTFRDIVWARPIT + LSGKAHDVNINLYTDKTGILYEVSGIENGSKVVYSQGKLGYELPETASKEKIDLEEVK + KRCTYTKSMSESYSLFKQMGFDYGNSFKVTKQMWSGDKEALVKLKLPEELSKGFNEFG + LHPSLMDGALRTVIGVGLREAEKNPTLRIPFALGQIEIFKPLEEECLSYAHLSDESQG + EILKYDITILSLQGEVLVKIKDFQTRAYKLAVAGNKAELKDLIYYKASWEKMEITRDE + YDVENIKKIDSVIVFDTGHELQNEFEMLLNSTAREQKEIILVKPGTSFNRDDDKTYTI + NPKSHEDYQELFKSLTQQGKSITNIIHLWSMNSNTLDLSGKIGCNELIKKLDSTNDTG + LYSIMYIFRAVTALKLENRTRCLFTFKGGRDNIQVCQEAVSGFANSITSVNHRFELIS + VQFDEYTLENVTIPPVLAVELTSKNVSNGMEISYENGERFIKQISRVEELGAGDSNIL + KPQGVYIITGGVGGLGMIFARYLAKKYNARLALTGRSPFNKDTEEKLSSLKGLGGEAI + YCRGDIVSTEDTQRIVKEVKDAFGGIDGIIHSAGLSGEKSVMEVDRNDFEKIMLAKTH + GLINLDLTTKDEALDFIALFSSISSIVGDFGGCSYATANSFLDRYAYARSAQVSLGNR + KGITLSIDWPLWGGGGLELPEEMAALYFEYSGMKPINAETGLKAFEDALRSGCIQLIV + AGGDNRKVDRALKVGRGKGAEAASVELMGEISLQETENKPEGSQESMILEQAEEYLKG + LLSNTINLPAERINAKLPLEKYGIDSVMIMEINSLLEKDFDSLPKTLLFEYSNLHDLA + KYFVKNHSSKIMEIRKIEVEPEQHLKATNREIITSSNDAATLKPFKSRFTNSTLRSES + VSSESGVMDIAIIGLSGQYPMAENLEEFWENLKVGKDCITEIPLERWDYRDYYDPDRN + KKGKVYSKWGGFIDDADKFDPFFFNISPREAELLDPQERIFLETAWETIEDSGYTRKT + LADKRVGVFVATMFAQSQIFSAEEQLKGNPYSAWTFFSSVANRVSYFMNFNGPSLSVD + TACSSALEAIRQGCQNILSGNCDMAIAGGVNLTLHPSKYVFLCSASFLSSDGRCRSFG + EGGDGYVPGEGVGAVMLKPLHKAVADGDHIYGVIKGISINHGGKTNGYTVPSPNAQAD + LISDVLNKTGINAKTISYIEAHGTGTSLGDPIEITGLQKSFREHTEDRQYCSIGSVKS + NIGHLESAAGVAAVTKVLLQMKHKKLVPSLHSKVLNLNIDFEQSPFVVQQSYEEWKQP + IEEKSGITKKYPRRAGISGFGAGGTNVHIILEEYEPKSSGQDKKNMQIVVLSAKNEDR + LKAYANKLLTYLEKNTEQRLKEVIDENEVIERIKDDISGIASGILDIDREEIDQDEDI + DEYGFDPLAIETLCRAINAKYGNVMEPAVVSGCGSITGLAKQIGAGRTEDLGRLLGIA + PKIKSIMVEADSDSTSLENIAYTLQVGREAFEERLAVTVSSIGELKEKLAAFCDGKSN + IDRLYRGNTRSSNSDMDFLIDGKEGDKYFKSLIESKNLSKIGRLWVSGVDIDWDRLYM + GTKPGKVSLPTYPFDKESYWYPRTGKIIHTSERVTANTLHPMLECNVSTLKEQRYVTT + LTEDMPFISDHLGSDMKILSSLALLEAALAAGELSAEEKVKVIQGINWGSPIVVSGDN + TELSISLYSADPLVEFEVSTLSCGKRIIHCQGTIGFEASPAETSFNYKVFKNKCSSTD + ILNSEEFYLMLGNIGLKYGENFKVVKEWAFMGNQAATLMVMPDTKEQTNDFTLNPTLL + EGIMQTATALLKERDDVYMTLCMDAISIFKPLTKECHVQTVLREDKGGLATFDINIFD + LQGQVLVSVKNLSLKVPDNIRHAIPDIDDGMLENLLKRLEEGELDEGNFEQLLGGIIN + E" + gene 1012977..1030541 + /locus_tag="Ccel_0862" + CDS 1012977..1030541 + /locus_tag="Ccel_0862" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: gur:Gura_3095 beta-ketoacyl synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75234.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MSNRYEKLRDTLERIKKGQITSEEGFKFIKELNQTELESMYYEN + SWEESPLLSQDKKLGNLLVFDTDESSSKMFKKFLKPGCKAVTVKPGKSFGIVGKGVYE + INPNEPEDYKKLVDSLNKNNAMPNEIIHLWSKGEFPGDTEELKLQIESGVYSIFYLTK + ELMGRNIKDRVRLIYIYTSQKEALQPQYAAVSGFMKTVRLENSKFLYTSVELDEAFNK + DAVESIVSEFYDENETMVRYEGGRRLVKRVKELTLGTESDTAIKVKEKGVYIITGGSG + GLGLIFAEHLAKSAKARLVLVGRSELSVRKADKIEKMKALGAEVIYVKADVANKNDAR + ELVDKAMASFGKIDGIIHSAGIINDSFIMKKTSEDMQGVLSAKVYGTFNMNEATKGIQ + LDFFVVFSSIASVLGNAGQCDYSYGNAFMDSFAVLRERLRQKGLVSGKTLSINWPLWE + EGGMRIPDEERKQMAKHTGLNTLPTEEGLKVWKTLKLLGKAQAAVFYGNREKALRFIE + KRICGKKTDEMVTPETSKEKAGEEVSVDPVILREKTEGYLKEVFGELLKIPIDKIDAG + IGFQEYGIDSIVVNQFNAIMEASLGALSKTLLYEYQTIAELTDYLTANFKGNLVSLLG + LDEKKAVPIFKKETAKNLDIGYVQELKPLRGKSVQKGHWEANREAEENEQEIAIIGVS + GRYPDAENLNVFWENLKNGRDSVSEVPKDRWDIDKYFDPDPEKSVEGKMYSKWGGFLK + DADKFDPLFFSISPKEAELIDPQERLFLQAAWAVLEDAGYTRKQIRELTQKEKGANVG + VFAGVTGTTYQLLGPEEWSKGNYVVPNSMQWSVANRVSYAFNFRGPSMPVDTACSSAL + TAIHLACNSLKKGECELAIAGGVNIYMHPSKYVSLSQARMLSPKGKCHAFGADGDGFV + PGEGVGAILLKPLQKAIADKDYIYGVIKGSALNHGGTANGYTVPNPNAQAGVINDALK + GAKVDARTISYIEAHGTGTSLGDPIEITGLTKAFREYTNDKSFCSIGSVKSNIGHLES + GAGIVAITKVLLQMKYKKLVPSLYSKQLNPKINFEDSPFYVQQELQDWKRPEVVENGV + KKTYPRRAGISSFGAGGSNAHMLLEEYDNSSHRRNSDYVGSCAIVLSAKNRERLIEYA + GKMVEYLKKYARELNPNSDSEMTEDIRLLDLAYTLQIGREAMDERIAFTAKDLAEVVS + VLEGYSQGETGFKNFYSGNIKRNKTDNKAGAAVGGDLGDICRLWVSGTEIEKELLYKD + TVPNRIPLPSYPFAKDTYMVPEAPEDNKKFGTTAKLHPLIDSNQSTLQEQCFIKSLTK + NDFVLRDHIVSDNMILPGVAYLEMAYAAGALANGVQKVKTLRNIIWAKPIVYQAPSTD + VRVSLYPDNGNVEYEVTTLAEDGIRIVHSQGRIDYKDDSENRDEFIDIEDIKKRCSLL + ATGEQCYDKFSEAGFRYGPGFKAIGEILGNKDEALSTLVVPNELKKGFEDYVLHPTIM + DGALQTAAGLINSGEGKQYLPFALGEVEIISPLFEKCYAYVTISDNTQGAGANLRKFD + IMLTDEKGRVLIKIKDFLLRELETDLTKKAYGRIYYVNEWEKSPAVAKTVELKENVLV + LDGNDEVCEIIREHAVNQAKVIQVKQGPGYKELGENLYEINPEAREDYSSLIKSLEEK + NMLPDKIIHLWSKADFDTNTDALKSGLQRGIYSIFYITGEMLKRKLKDGMTLLYMFDS + AKGEQPVNSAVSGFAKTLEKENPKFIIKTVEMKNVESMDVLTADIALNELNDDQYPHQ + VLYKEGERFVKQLKEYALKEEKQSDSFKQQGVYIITGGAGGLGLIYADYLAKNYKAHI + VLTGRSELTSGKKEKLKEIEAYASSLIYKRADISDPKAVAGLVAEVKFKHKAINGVIH + AAGVLRDSFILNKTSEEFDGVIGPKVFGTVGLYEALKQEKLDFFAMFSSTAGVTGNAG + QGDYAFANSFMDAFSHKLNLEGGNMKTISFNWPLWKDGGMQVDKKSIKMMEKMTGIAP + LSIDAGVKAFECGLGAGVSQFMVLEGNIEKIKKTMAPKQEDDTSSCEITVLDKEEEAR + LRQKTEDFLKNILSKEIKLPPAKIDPYEPMESYGIDSVMIMGLTRELENQFGELSKTL + FFEYQSIHELAGYFIQNHQSKLVEKIGEDKKPQPAQKEKAKPVENIHAQVRSRFDAQV + GVSGKAKGINEDVAVIGISGRYPMSKNVEEFWENLKNARDCIEEIPSDRWDYTKDFDP + DKNKRGKSYTKWGGFIDDVDKFDPLFFNMSPMEAQFIDPQERIYLETVWQAIEDSGYT + KSKLTNSGVGVFVGVMYGHYQLFGVEECQKGNMIALESSYASVANRISYFFNFHGPSI + ALDTMCSSSITAIHLACESLKRGESEIAIAGGVNVTIHPNKYILLSQGKFAASDGRCK + SFGKDGDGYVAGEGSGALVLKPLSKAVADGDHIYGVIKGTAINHGGKTNSYTVPSPNA + QSWVILEALRNAGINPRTISYIEAHGTGTSLGDPIEITGLMKAFGEYTKDKEFCSIGS + AKSNIGHLEAAAGVAAVTKVLLQMKYKKLVPSIHSETLNPNINFKESCFVVQHKYEDW + KQPVIIENGVEKTYPRRAGVSSFGAGGANAHIIIEEYTGNSAEQYNLDEGVQVIILSA + RNEDRLKAYAKELVHYLKKYTALSGEEDKQKVSLSQIAYTLQTGREPMDERLALGVSS + LEEMLEKLEMFVQNKNNIDGLYRGNVKKSKDKSDLLIEGEEGEEFLRRTISKRKMEKL + AKLWTAGIDIDWSLLYKKHSVISLPSYPFARERYWVPKLDGAENGQEYGQLGMARLHP + MIDSNVSTFEEQCFMKTLTEGDFYIKDHVIGQDMMLPGVAYIEMARAAGTLASRRESV + RVIKNIVWAKPVTLTDGSKEVYISLYPKNEYIDYEVFSIPDDGRRVIHSQGRLAYGDH + ELSQPEVIDIEGIKKACTMMVKGKDCYTEFEASGFNYGESFKTLQDLYLDDNGALALI + KLPEGLENTFDRFVLHPSIIDSALQASAILIGKTLNDAVYLPYSIGEIKILGPIPAKC + YAYVKTSDTGKGGVKGFNIKITDEAGQVAVAIRDFTVKEYRGISQDAGGDTVYYTCTW + EKVQPLKQYSEDYGNIMIFDTDEGLTQALKQNSRGSIVLVKPGDAYSDNGNGVYTLNP + ADGEHYARLVGDLKAKGINPVNILHLWSKQGFETSKEGLDAQLDMSVYSVFRLTKALM + AQKIKDNINLLYVYNTREKAEQPLYSAVSGFIRTTVKESSNLRYKLVEIRNMVGSAIS + NLDTFINELKSEDSEYEILYNRGERYVKRTKEYENKGVADILPIKEKGTYLITGGMGG + LGLIFAEHLSKKYKANLVLTGRLALEGERKTKLAELEALGANILYIQADICDQDQVQS + LAVKAKSAFSKIDGVIHGAGVLRDSLIINKSQEDMDAVVAPKVFGTVLLDEALKSEKL + DFFAVFSSTTGVLGNVGQCDYAFGNGFMDNYVELRQRQNPGTKYLSINWPLWKNGGMK + VNEQAVTLMKKMAGIAPLSTGAGIKAFEKGLASDVHQIMVLQGDTVKIKAAMSAVKEK + TTEIAKEPIDISPEENSQIRQKTETYLKELLSKLIGLNVSRIDSNEAMEVYGIDSVMI + MDFTRELEEKFGELSKTLFFEYQTIAGLTGYFTSSHMSTLVKMFGQANVPQSAVKPTT + AIAEPIMKEELQSFRSNRFMNMGGAYSDNGYLYEDIAIIGVSGRYPMAQNIEELWENL + KHGKDCVVEIPSDRWDYRPYYDPDRNKMGKANSKWGGFIDNVDKFDPMFFNISPIEAQ + ISDPQERLFLQTVWHAVEDAGYTRQKLSNTGVGVFVGVMYGQYQLYGVEESMKGNDMA + LQSTFASIANRVSYYFNFRGPSIALDTMCSSSLTAIHLACDSIRKGEIEMAVAGGVNL + TLHPNKYILLSQGKFMSTEGKCRAFGEGGDGYVPGEGVGAVILKPLSKAVADRDNIYA + VIKASELNHGGKTNGYTVPNPNAQANVISNALRKGKINPATISYIEAHGTGTSLGDPI + EIAGLSKAFRQYTSENGFCSIGSIKANIGHLESASGIVGITKILLQMKYKMLVPSILS + ETLNSNINFEDSPFYVQHELEPWERPVIIENGVEKTYPRRAGISSFGAGGANAHIILE + EYAADFSKQAVSPLKKPNLIVLSAKNEERLKEYAEELYKFLQKGIVINLKEAVNKTAI + IKQLQTELLEIATGIINVPAEQIDMSESIHEYGFEPVSLTEFADSINEKYDISTDFSL + FNEYISIANIAEYLFKTYEDVFAKPDTTSLIPAQDVSVQETISLTDMAYTLQTGREAM + EERLAIVVEDLQELREKLMLYCQDKNDIDGLYKGNIKSGKAKSELIIDGDEGEEFIRK + TIHNKKLDRIARLWVSAVEIDWSLLYDKEMPNRISLPVYPFAKQSYWVPGTDDTGDLA + GRRGVVSRLHPLIDTNESTLQEQCFKKLLTGSEFYLRDHSVGGEMLLPGAVYIEMARV + AGNLANKEGSVVSIRDITWIRPIAVGTTPKEAYISLYPVKDGIEYEVSTRGEGGIRLV + HAGGMLSYGDLGEIQSERIELEEIKARCNLSMNGEECYKVFKDKGFNYGPGFKTIKKL + VANKTEALAYLELPTEAGGDLESFMLHPSLTDGALQAVAGLVGDSSIMYLPYAIGEVK + LIGALTEKCYSYVSSAPKGSSENLKFNIKLTDEDGCLLAEIKEFIVKPYKEAMHSKPE + IAAEEKTSTMVVKEVSENIEGEYENSALIKRTEEYLKNVLSKVALIPVNSIDSAEPLD + KYGIDSIMIMNLTGELQSHFGELSKTLFFEYQSISELAGYFIENHLEKLLERVGDIKK + PGTLNIKKARQEVQKNGTTQKVPETSRSRFAYSSSATMQEDIAIIGLSGRYPMAKNVE + EFWENLKAARDSITEIPKDRWDFRKYYDADKNKRGKAHSKWGGFIEDADKFDPLFFNM + SPIEAQVIDPQERIFLETVWQTIEDAGYTRQRLDNAGVGLYVGVMSGQYQMFGPEENM + RGNMIALGSSYASIANRVSYFFDFHGPSMAIDTMCSSSLTCIHLACDSLRKGEIDIAI + AGGVNLSLHPNKYLLLSQGKFMSTDGRCRAFGSGGDGYVPGEGVGAVVLKPLSKAEQD + GDQIYGVIKATALNHGGKTNGYTVPNPNYQAKVISEALKKAGIDPRTISYVEAHGTGT + SLGDPIEITGLMKAYGEYTKERQFCSIGSAKSNIGHLESAAGIAGLTKVLLQMKHKQL + VPSLHSEILNPNINFKDSPFYVQHTLSEWKQPIINENGMEKKYPRRAGLSSFGAGGSN + AHIIIEEYQIPKESGGTKDEYIMVLSSKNEERLKAYAKELSDYVKKHILTVDNENADI + LLADMAYTLAIGREPMEERLAIVVPSLHALNEKLSAYVQGKNDIDGVYTGSLCSEKSK + SEFFLDGKEGEEFLKIITMDRKLNKLAQLWTSGAGIDWSLLFDDENRAIISLPAYPFA + RERCWIPGTEEHGHSGGTYGRIAKIHPLLDKNTSTLREQRFTTVLNGKEFFLENHTVG + GKKVLPGAVYIEMARAAGTYAGEQEAVAVSGIAWAKPIVVDETPKEVNIGLYPDEDKV + DFEVYTIGDNGVRLVHSEGSISFEPSSDDSVTSIDLDAIKKRCTNSISGEDLYKGFER + SGFGYGQSFRAIKELQGNASEVLSSLELPDSEGGDDGFVLQISLIDGAFQTVAGLVGM + TGDSFLPYETGEIEIIGKLTPKCFAYVLKAESFDENPETIKFNIMIVDETGKISVRIK + DFTVKKLNKEAAIRPVKIVGRAISREDIMGLEGSAPDKVMNILKSIEERKINADEADR + LMEEIYESSK" + gene 1030525..1034847 + /locus_tag="Ccel_0863" + CDS 1030525..1034847 + /locus_tag="Ccel_0863" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014350 MlnC" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75235.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MSHPSRKEILKMLETAQISAAEAYGLLKKIEAGHALDEKPLYFG + EEWIISEADSSEVTEQGTIMVMDLGAGIGHEFKRSASNKGLHVVLAVPGQSFSEGEGG + IYEFEITSPDCFTMLFESLKKKGSVPEKIIIIYPDGQGALPDTINESLDRGIYGLFKT + IKAIMTQKTKAVKLLCVYGGNTTSQNPCYAALSGFAKTLFMENPKYTCKVLEVPDISN + VEFVFEKAITELSLKNVMEFEVKYSDKCRMVKTIKEIEKTECKSLPIKEDGVYLITGG + TGGLGLIFAQYLAEKYKARLVLTGRSALTDEKKVAMTKLENCGAKVQYIKADVTSRES + VNKLVESVKSSFGCINGVIHSAGVIRDAFIIKKTLEDMKAVISPKVYGTMWLDEATRS + ENIDFFVLFSSASSATGNMGQCDYAFGNSFMDNYAVMRSINNPNSVSLSINWPYWKEG + GMRLGEETIAMMKKISGIIPLLTDEGIRAFEYGLCCSPALSRLIVLKGEAGRIKNSLG + IKTEKQEELKQTIKENQPAPAVANTNIAAGEDEKWILKEKTEAFLKEILSKQINLSVD + RIDSVEPLERYGIDSVIIMGLNSELEGHFGKLSKTLFFEYQSISELAEYFMEKHSDKL + YLKFGGLKKTEDREQAVIIGDFTGTETQSRFQSRGRNRFAGVGQTKKKDDEDIAIIGI + SGRYPMAANLEEFWENIKAGKDCVTEIPKDRWDYNDYFDTEKGKPGKNYCKWGGFIDN + VDCFDPLFFNISPREAEYMDPQERIFLETVWHTIEDAGYTRATLGSNVGVFVGAMYAH + YQFFGVEESAKGNITTISSMLSSIANRVSYFFNFQGPSIALDTMCSSSLTSIHLACES + LRRGEIAVAVAGGVNTSLHPYKYNVLSHGTFISSDGKCRSFGEGGDGYVPGEGVGAVL + LKPLPKAVADGDNIYVVIKGSSVNHGGKTNGFMVPNPNAQANLIGATLKKTGINPRTI + SCIEAQATGTPLGDPLEIAGLSKAYGEYTSEKQFCCIGSVKGNIGHLEAASGMAGLSK + LILQIKHKMTVPSINSEKLNPNINFKDSPFYIQHELEEWKQPVITENGIAKKYPRRAG + LNAFGAGGSNAHFILEEYEAPKGSKYVSGVEQIVVLSAKSKEVLKDYARRLSEFLTKN + APQYNEGWISNIAYTLQTGREAMEFRAAFIVSDINELCIKLVSFINDTDEPGIYKNGS + EKPQMSFGNPDEAFIKAAILSKDIQTIALLWVSGIELDWKLLYKNGTPQKTPLPVYPF + LRTHYHLPEPECRVEKSSKPSLDSQKKVKTAEPEREKHFTDELIPFENQVESVLRQII + SKLLKLPEEQIGVDENLKIFGFDSLSGMKLANIIQDYFGSKIPVKSLFEFNSIKDIAG + YLIKEKIIVPESTEEKPMSSVEERDSSDRKILKFILEGLSEGSITTEQAMELDSQKIK + AAER" + gene 1034855..1041046 + /locus_tag="Ccel_0864" + CDS 1034855..1041046 + /locus_tag="Ccel_0864" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase + and ligase; condensation domain protein; + phosphopantetheine-binding; Beta-ketoacyl synthase; + KEGG: bay:RBAM_016980 BaeJ" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75236.1" + /db_xref="InterPro:IPR000073" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MRYSRKEIYSKVASKQMTVEEAMAYLENLQDSERAQKQPIREEY + PLSEGQKGLWVVNQFTPGNYAYNCPIAFKISSDVDIAALKKTFQILIDRHPALRTRIH + LVGSGPAQTVMENQEVLFEEKYLDTLADDEIEICVREEARKPFDLECGSLLKVTLFRL + PEERMVLLINFHHIIYDGMSFAIFMREFQQIYIALKSGTKYELPDVKATYKDYVYWQQ + SMLQGEAGARHRDYWLKQLPDGIPAIDLKPDKPRPSVQSLKGSSVVAGIDRELTQSLK + NLSVSTDKTLFVIMLSAFNVLLYRYTNQEDICVGTPMLGRPGIKFENVLGYFMNIVVI + KSRLNSEYKFYDLVNDVQNTVYDAFDHSDYPVSTLIEEMRKAKMANAQLFQIAFYFQN + WMDDLQKDLETGAEGSTGFMDFIPLPGIHQEGEFDLALEILENEKDLSIYFKYSTDIF + EEQTIKRMLGHYTEILRYIVKEPSSKISDITLLTQEESNVILKDWNNTFFEYPSDKCV + HELFEEQARKTPDAIAVIFEEKSITYGELSKKVTLLAAYLKLYCVEPGILVGIFMERS + IEMVISLLAVLKAGGGYVPLDPTYPADRLLYMFEHSKMPILITQSSIEDRLPECKVEL + VLIDTGWDTIVSESEKIIKDMGDEVFRTSAKPENLAYVIYTSGSTGKPKGVKVIHRGF + TNFLCSMAECPGFTDQDYILALTTICFDIAGLEIFLPLIKGGKVEMLPNSIAKDGIKL + REKMENSPVTVMQATPATWQMLIAAGWEKKVPIKVLCGGEAMSRELADKLVERASEVW + NMFGPTETTIWSSVSLVKANEKVTIGRPIANTQFYVLDELMKPVPAGVAGELYIGGDG + LAEGYLNRPDITTEKFVKSPFDNNAIIYKTGDLVCYLPDGNIEYLSRIDHQVKVRGFR + IELGEIESALKKIDEIEEAVVVMREETGHKMLVGFLIPKENVELPSKRQIGEMIKKWL + PDYMVPASFVFLKSYPMTMNRKVDRKILFTRSIEEITKGFGGSGMNALEKNKASSSKP + STVKTHKTVAKDVNQLLLQLITDDLCKAVAYVIEGNADEIDVHTPLGEYGFDSIRYTT + FSVILKQQNTLEFNPSIFVQYPTVESLAEYFFKNNYQTMRSHYAEMLEQMQKEVELQE + DENVSNEVSDQGTIRTGTGTITQEPVAIIGIYGKMPGSYDLDTFWGILEKGESVISEI + PDDRLELMGLSRKDLKSGAGWGAFIDDVERFDAQFFNMSKIHAEMTDIHQRLFLETAY + NTIEDAGYKPSGLAGTKTGVFVGVASSDYGDILKKKGIYGEPYTIEGTSANMVANRVS + NVLDLRGPSVAIDTACSSSLVAIHRAAKAVRDGECQIAIAGGVNLLLSGTALEGIAKN + GMLSQTGTCRVFDKDADGYVRGEGVGAVLLKPLSKAVEDRDHIYGIIKASAENHCGSG + NFIASPNSDARRELLCEAYERAGIGMDTIGLIEVSGSATTLGDSVEVNVLRQAFGENS + GAEQASIGLGCVKANVGHLEAASGIASLFKVLLSMKNGKMPSTPGLKEPNPYIEQSNS + PFFLLKDGAVWEPKKDVANKPIPRRAAINSFGSGGSNVHIILEQYTDERKSVQKENDL + YLVVLSAKDENRLKHYSADLLESIEKNTAKDRDGLNLGDLAYTLQKGRDTMEVRLATV + VSSMDELKEKLKAYCSGTQAKNLFTGNARTEKIVKTEADKKRSEEISLEETAATWVLG + AEVEWEHLYKSELPYSISLPVYPFAGEKFFVRSKDSGVNKKIAIAGIRKASFEDMFGG + YCKALQDKTLSAENTIDVVNEYINGEASRGNILHLFVEISNSSKMEVMVSGKGTPILL + ISGYAATAPQWFFQFKNWSSNHKLISINTPWHGMSEGIEDVSLAGIAKAYAEVLRELD + ITEPIHVIGASWGSMIAQQFVADFPEMVKTLTVVGGMCSYKVDDEEKTKEDLKRDFNN + INAPKFYDLFMYTSSIKAEATQLNEIFINEGFSTMDILHKIKVPTLVVGGAKDVLIDH + EQFQLLYCKLPDSRYYEMASAGHAPFITHHREFNKRVMTFIRDNEKR" + gene 1041504..1041893 + /locus_tag="Ccel_0865" + CDS 1041504..1041893 + /locus_tag="Ccel_0865" + /inference="similar to AA sequence:KEGG:LPC_2985" + /note="KEGG: lpc:LPC_2985 acyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="acyl carrier protein" + /protein_id="ACL75237.1" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /translation="MCESNILFQKVRSIVIEALSIDQADDVSLDSLLIQDLGAESIDF + IDISFRLEKEFGIAKVNANNIFPFAYLQKDLFNDTNQLIHTAVEEIKVNYPHIDDEVF + ENVSKKCDKFMLFSLQVILKYVEYNAK" + gene 1041890..1043122 + /locus_tag="Ccel_0866" + CDS 1041890..1043122 + /locus_tag="Ccel_0866" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: Beta-ketoacyl synthase; + KEGG: tte:TTE1470 3-oxoacyl-(acyl-carrier-protein) + synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75238.1" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MSRKRVVISGIGIISPIGDSIDDFWNAVLDGKSGIKYFSDEYRH + LNINGVKGGGYISRIDLSRFEIRKDKIRQIKDSEKTTKMLIYAGLSALEDAGIKYPLD + VEKYNLGMIVGTGMSLAERYSEIPYSERNPKWFLETYPNIHLAYFSTITSLKGFSSTI + VTACTGGSQAIGTAFRMICNGDADIMLAGGVDSRFSTPYIYGFSRLNMINTEQDLLSA + MRPFDRNRSGFVMGEGSCILVIESLEHCMERGGTAICEIVGYGNASDATSLTDANCHG + KYRAMDMALRDAGISIDQIDYINSHGTSTQSNDREESKAIKELFGKRAYDIPVNSTKS + IIGHTFAACGAIEAAVCAKSILSEKIHKTLNFTLGDIYCDLNYVKDDVIQKKIAYCIS + NNSSIGGYNTSLVFKEID" + gene 1043135..1044406 + /locus_tag="Ccel_0867" + CDS 1043135..1044406 + /locus_tag="Ccel_0867" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: Beta-ketoacyl synthase; + KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein + synthase II" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75239.1" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MKKVVITGMSLMSILANDKKGHQDIIKLDQMPENKFPISYWDNY + FDGEVGSIPFFEPKEFIKNPKSIKFMSRQTILGCTAVAQVIRDAEIDDNQLQKKQFEN + SLIWGAGVSDSIFPLLPAVIDCIRDDGCIDYKSLGEDGYRNLPPLWILKKLPNTTAGQ + ISVQNCIRGLNYTVVNGPLSGILAFSMAFEHIQSCRSNFTICGAAEERTHSDYIYYLK + EKGVISLSTNGLMPFDEQSDGGYIAEGASAFILEDEDSACERGARVYAQVLACSNRYL + PHFTDSGYEYAALKFEKCMRTALENAGITAEDIDFIQTSACGDKRLDFPEALAIRSIF + GNKVPITSCSSYSGYTLGASGVVSLSYAIMQMEQNLVLPMRKTENKFLEDELNYVVER + LQRHKNNYVLINSFSYMGDACSVVLKRGGVK" + gene 1044403..1045698 + /locus_tag="Ccel_0868" + CDS 1044403..1045698 + /locus_tag="Ccel_0868" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: Beta-ketoacyl synthase; + KEGG: bcl:ABC2546 3-oxoacyl-[acyl-carrier-protein] + synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75240.1" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MREVVVTGMGAVTPFGFGVDVLWKALLSGENAIRYLDSRIYQGD + IVKIGAPLPELDFRHSFIHEDYFEMVKNEDNNLRLFFLAVLEAIGKSGIDPRNLNDTG + RIGVFIADRYNSPIQYLDDFAPLLLKAKDDKNQINEKVFFSLLGNYNQLKHYRNYNTS + ESINHFVSRFYNIEGPQLSIGTACASSNTAIGEAVHKIINNKLDMAIVGGAYNLDLSA + MIGFSRIEALTTNPDPDTACRPFDLNRNGFVMGAGCGILVLESLESAKNRKCDILAKV + LGFGSYTDAYRSTDPDPTATAATMSIQSALKMAKVDISEIDYINAHGTSTKMNDYTET + IAIKNVFGEYAKKIPVSSTKSMIGHSIMAAAAIEAIICIKSIQDNVIHPTRNYKQMDL + NMDLDYVPNELREAKVRKALSNSFGFGGINTSVVFSSVS" + gene 1045726..1046712 + /locus_tag="Ccel_0869" + CDS 1045726..1046712 + /locus_tag="Ccel_0869" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75241.1" + /translation="MSLNSESFNDYYSHLKDYTQIVKNGNDISLSICIDTVKHQYLCD + HVFGGMCFIPATMIMELLMEAALWYTREILKKDDFFPVGLDDINIERALTVAKGEAIQ + AVINFQKVVDTNGEIAVYFIINSERKSATGEKVGTRINTTAKVILAKEYPATPSVDYS + DAFTERYNIPQDVFYREYFPSLGFLFNSCIGKIAFDREQRIFCGVYNCNSKEKEFIKN + DTSAFLSSPLGNDSCLQYAVFFSRILALKGRLPIGGRELRMFKKHPVNGEVKVFIKCI + HLDDDIMIFDFYSFDETSLIALGKEFKVKKSPYHKELSRQEFELIMNLYKEE" + gene 1046714..1047460 + /locus_tag="Ccel_0870" + CDS 1046714..1047460 + /locus_tag="Ccel_0870" + /inference="protein motif:PFAM:PF00561" + /note="PFAM: alpha/beta hydrolase fold; + KEGG: amt:Amet_0320 alpha/beta hydrolase fold" + /codon_start=1 + /transl_table=11 + /product="alpha/beta hydrolase fold protein" + /protein_id="ACL75242.1" + /db_xref="InterPro:IPR000073" + /db_xref="InterPro:IPR000639" + /db_xref="InterPro:IPR003089" + /translation="MNDLLFLNGMYKGKESWIKQIRSKKLKENYRMIFMDYPEFGTTE + VHKEYMHVVMENIYSLLQKQNIEKINLIGYSIGGVFASWFASLYPEKINSLVLINSGF + YLSTYMKVIIRQSLKLLQSEIDFSMIYPYISVWNYSEEYLEKIIELPNYINPYYDGYK + VNRNVLSGLLHIADRLENYKGCIEKIRCPVLVIGAENDSVLPFERQLKLFKNRSGFEV + KIVSGSSHSAIYENSNEVNAYIQEFLDRYN" + gene 1047481..1048050 + /locus_tag="Ccel_0871" + CDS 1047481..1048050 + /locus_tag="Ccel_0871" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75243.1" + /translation="MSNILFFYVGNSYNEKKFDLFKSQHNIYSFFDKQNCSSPILSDK + LGFTVDYSNPDELNQLISEISSIDQIFVFSKLTNYKEKLEEMQEILDKVFLILKAVTF + KLMLQKRGNVWLMHEQYLDTKCLSSELGAGLKSLIQVFAMEMSKKGIKANYIILNSNK + DKAKDKLENIIEWGESDCVFNFTAQQLII" + gene 1048065..1048802 + /locus_tag="Ccel_0872" + CDS 1048065..1048802 + /locus_tag="Ccel_0872" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: NAD-dependent epimerase/dehydratase; + short-chain dehydrogenase/reductase SDR; KR domain + protein; + KEGG: tpd:Teth39_1287 3-oxoacyl-(acyl-carrier-protein) + reductase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75244.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR013968" + /translation="MDERVALVTGGTKGIGAAICKQLALEGYFVYINYRRDTPEKDDL + INEIRATGGKAKLICFDVTNIDEIQIAINSIVHEKIDILVNNAGFLQDDLIYKIELKT + WHTVLNTNYFGPVRLFELIKEKLLKGERPSVINIGSISGIKPRAGQAAYAVSKSMIIE + WTNVMANTYTNKINFYCVSPGPVKTQMIIQTKWGKDPNATKRIPLGRFTEPEEIAKIV + HLLDKNNFILSGQNIVYDGGFINTIME" + gene 1048847..1050178 + /locus_tag="Ccel_0873" + CDS 1048847..1050178 + /locus_tag="Ccel_0873" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: sez:Sez_1209 oxygen-independent coproporphyrinogen + III oxidase 1" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75245.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MYEIDDEEFWKIYETKSYLDIFYIRNKVWRSLIPARPPIGSRNE + MMQKENHFPNNKNMLYFNIPFCASRCSFCLYYTKIYERELVDRYLDALEKEVEAISNT + KYVKSTRFECVYFGGGTPSLLNEKQIDRVANIVFKNFQVTDELEISFEANPSSLSLDK + VMALKRNNFNRISLGIQSFNDKYLKQMNCRHNSKEAKEVINMLLEKGFNVNIDLIYGF + QGQTEEELQMDLEEILNFKNLHHISIFPLRLVTQTPLYNKLEKQQELNIQAHQNKIVK + YHECIDSFFKNNSYISEEESVHYYKRGFHPHRYQSLDGRIIGFGSGAGTLLDNVESGN + KFDVNDYIEAINSKNSAAFADSVITDEQMYERYILYRLLYMNRSLPDLKGIIEKRFSE + FYGIDIGDRYEKVIGHLLAKKLIVLDGQRVIFTDKFLNILKNFRFGTPSVI" + gene 1050190..1051236 + /locus_tag="Ccel_0874" + CDS 1050190..1051236 + /locus_tag="Ccel_0874" + /inference="protein motif:PFAM:PF08541" + /note="PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] + synthase III domain protein; + KEGG: wpi:WP1025 3-oxoacyl-(acyl-carrier-protein) synthase + III" + /codon_start=1 + /transl_table=11 + /product="3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase + III domain protein" + /protein_id="ACL75246.1" + /db_xref="InterPro:IPR013747" + /translation="MDGFYSSFKDIYMSVPEISLPNEVIDNEEVIQRVKNNFKGTDEE + FIKIKRGLEKSFYFSGSNTRYSEESGEEKIGINAAETAKNLLNKMNISPNEVDMVIYG + SVTRPYLEPSVAAEVASRLGVKNAHVFDVNCACSSLLQAIYTGAVFLNSHKELNYVVC + CACEYPMSAVDYNIQSMKELLLKSSAFSLGSASAAVILARKPFKNNGFRLHSFRNRTY + TDIWDASITPLVGSIETNSLVIEDAIHEILPEEIYGHVKFLNWKIEDLKQLIFHQPGD + FFIRWVINNFPEVNEEKILKVHQYYGYTASTSVLLALDHYIQNNTLDNGDKMLLVVPG + AGLSILAAGVSWEG" + gene 1051244..1052935 + /locus_tag="Ccel_0875" + CDS 1051244..1052935 + /locus_tag="Ccel_0875" + /inference="protein motif:COG:COG1541" + /note="KEGG: rxy:Rxyl_2997 coenzyme F390 synthetase-like + protein" + /codon_start=1 + /transl_table=11 + /product="Coenzyme F390 synthetase-like protein" + /protein_id="ACL75247.1" + /translation="MIDILKVLVNNINVELFDKSKKNILFEIKDNSHTFQYWLRFKDQ + IEIYEGIPSNADIIIKGEKEVFKSIANGDITYPSFLIQNLLTIEGNGDAFSFVKKLFK + PSNAIDIWSAKKIIETQNELLKTEEMTRNEIIKMQREKLDKLIRYAIGNSDFYRNLYK + DIDLDNYTLESLPVINKKMVMQNFDKIITDKRLKLEEIYPYIYDTNSEEKFYKDEFIA + TTSSATTGIPGVFVYNKDSWLLSILSQHRSSRQRMKNRTVIPKMALVSTTSITASSHN + SVRLYPTHIMQTKTFSMIDSIEDIVSGLNEYQPHILTGYPTALYSLALEQQSGKLNIR + PWWINTFGEQLGYMRTTIEKAFGSEIFDTYQTTETMNIAWECEQHQGLHINSDLVIIE + SVDKDNKPVKDGEIGEKVLVTNLFNYTQPLIRYELYDIISLSKKECLCGSPFPVIERL + EGRVEDFLTLLSGERIIKLNPLTVAAIMNEIRGVNMWQFVQSDFKHVLINIVTVEPQY + ADLFKECFINKVLKPNNIDEGTIVEIKNVSSIKPINSSGKIQSFINYINREGVKV" + gene 1052932..1053705 + /locus_tag="Ccel_0876" + CDS 1052932..1053705 + /locus_tag="Ccel_0876" + /inference="protein motif:PFAM:PF00899" + /note="PFAM: UBA/THIF-type NAD/FAD binding protein; + KEGG: rfr:Rfer_3218 UBA/ThiF-type NAD/FAD binding protein" + /codon_start=1 + /transl_table=11 + /product="UBA/THIF-type NAD/FAD binding protein" + /protein_id="ACL75248.1" + /db_xref="InterPro:IPR000594" + /translation="MSAFTYSDLISRNYAYINEELQTKIKQTRLVFIGCGLSSGIVED + FARIGFTKFVLIDFDVVELSNMNRQHYYFNEVGLNKCEVLKGKVIEINPEAKVEAINR + KISGAKDIDWLLCNADIVINTIDFGEDYFNLVSQAQKKGVLAICPLNLGFGGMITCFN + KYSGTFYDLLGVEQPETRTDYYLRLFVRNRDKLKIAEYFYKNLIQLTNRIQQKGYQPQ + MCIGANIVSALIITTVVKYLNNDRISLAPEIIYKDFFSI" + gene 1054243..1055553 + /locus_tag="Ccel_0877" + CDS 1054243..1055553 + /locus_tag="Ccel_0877" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: csc:Csac_1170 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL75249.1" + /db_xref="InterPro:IPR011701" + /translation="MNTLQKIKTLGKHPLIQLLKNNKGNPTTLILMEPLWGIPYNLIA + PFATLYMYTLGITDVQIGLILSIAMFVQVFFSFFGGIITDKLGRKFTTMMGDFFGWSI + ACLVWAISDNFWLFLIAVLFNSFEQINQTAWFCLLIEDADPKDLLGVYTWVNIGGLVA + IFFAPISGLLINSFTVVPVVRVLYLVFALNMLIKVIITFRHCDETRQGKIRMAETKNT + SVLQMLYEYRDLIPKVLKNIEIMKVVIISVILHITNLISTNFFSLYVTQRLGIADSYL + AFFPILNAAVMLIFMIGIQHRLESVKFRIPMWIGLVLYAACSILLILTPIGSIPFVII + YVFVGAVASALVMPRKDALLQLNINPKERARINALIMSFTIAFASPFGYLAGWLSSID + RRLPFIFTFSIFIIAIIIVGRIRDPEFDEAHSEVDDPVVSGTVE" + gene complement(1055703..1056692) + /locus_tag="Ccel_0878" + CDS complement(1055703..1056692) + /locus_tag="Ccel_0878" + /inference="similar to AA sequence:KEGG:Cthe_2575" + /note="KEGG: cth:Cthe_2575 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75250.1" + /translation="MKKLFILFAILTSTIFILPSCGSNDNLTKVKLSEVTHSVFYAPQ + YVALDKGFFKDAGLEIELQNGQGADKVMTAVLSGQCDIGLAGPEASIYVYNEGKADYA + QVFAQLTKRDGSFLVGRKPEPGFEWHSLKGRNIIGGRKGGVPEMTLEYVLNKNGLVPG + TDVNVDTSIQFALMAGAFTGGKGDYVTLFEPVASSLEKEGKGYILASVGQDSGEIPYT + AYFAKKSYIEKHKAVIQKFTNAIYKGQVWVDTHSSKEIAEIIKAFFPDTDTELLTIVA + ERYKKIDAWCKEPAMKKESFELLQTVMNQAGELKQKAPYDKVVDNNYADKAVK" + gene complement(1056731..1057555) + /locus_tag="Ccel_0879" + CDS complement(1056731..1057555) + /locus_tag="Ccel_0879" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: dsy:DSY3394 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75251.1" + /db_xref="InterPro:IPR000515" + /translation="MYMFKHKEQTIVSLERLVYLKSKKRRKVSVLVTQIVILVVFFAQ + WEILARLNIVDSFITSQPSRIANTIINLYSEGQLFHHIGITCWETVVGFVAGTVLGTL + IAVVLWWSEFLSKVFEPYLVILNSLPKIALGPIFIVWFGAGTTSIIIIALAISIVVSI + LEVLNGFMATDEEQVKLVKTFGASRFQVFTKVVFPANLPVIINSLKVNVGLSWVGVIV + GEFLVSKSGLGYLIVYGGQVFKLDLVMASVIILCFAAGIMYQAVVLLQKILIKKHI" + gene complement(1057542..1058312) + /locus_tag="Ccel_0880" + CDS complement(1057542..1058312) + /locus_tag="Ccel_0880" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_2573 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75252.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSYIVEIKNIGMNYQSLNGEIPAIAGISMNISKGEFICIVGPSG + CGKSTLLSIIAGLIKPSSGSIVINSGCKGKCLLDVGYMLQKDYLFEWSTILENVMLGL + EIKKALNTENREYVYNLLDTYGLSEFKDKYPSQLSGGMRQRAALIRTLALRPEILLLD + EAFSALDYQTRLAVTEDIYYIIKKENKTAIMVTHDIAESISMADRIFVLTGRPSSIKC + EYDISLTCNDVRTPFNSREAPEFRHYFNKIWEELDVHV" + gene complement(1058505..1059806) + /locus_tag="Ccel_0881" + CDS complement(1058505..1059806) + /locus_tag="Ccel_0881" + /inference="similar to AA sequence:KEGG:Cthe_2805" + /note="KEGG: cth:Cthe_2805 carbohydrate-binding, CenC-like + protein" + /codon_start=1 + /transl_table=11 + /product="carbohydrate-binding, CenC-like protein" + /protein_id="ACL75253.1" + /translation="MKKKLKSFCTVLSLMFLFQVQPHNIALDGGIYTNEANAVTVISN + GNFESGSGNAPTGWSTDAWTTGSSFTWEQSAGRNGSKCISITSNSYNDARWVQTVQLT + PNKHYVLSAYVKGENINPDGTATTGANISVMDEWTVSDSTESTGTFGWKKIYLDFVAP + ESGSVKLGCRLGFYGSVMSGKAYFDDIEIIELQRRSGRNVYLNLESSQWSIFTGTNDT + RWIGHLDDAYDKYYELVGTKPYNGTNIGIKSAHIYPGYWAIAGNPINWNQPYVAEEIY + KINTDDDWSFGILHEIGHDFDQDGWNWDAEFWANTKMYYVVEQLGGKVFQNNTYYVGS + QLENYYRTHASGSYANTIANRTFKGDGLTYCFIRIKNVIGWEPFKMTFRYFTSSGANP + ASKVAKFDLFLDKLTEYSGYDVRSTFLTGELDTIRNYLAAN" + gene complement(1060086..1060367) + /locus_tag="Ccel_0882" + CDS complement(1060086..1060367) + /locus_tag="Ccel_0882" + /inference="similar to AA sequence:KEGG:DSY3041" + /note="KEGG: dsy:DSY3041 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75254.1" + /translation="MSVFEALMLLSFGAAWPAQIYKSYKSRKTAGKSVAFLYILIFGY + LCGITNKILYQRDIVMILYIINLIMVSTDLCLYYRNKRLEKNENITPIM" + gene complement(1060446..1061342) + /locus_tag="Ccel_0883" + CDS complement(1060446..1061342) + /locus_tag="Ccel_0883" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: tte:TTE2603 xylanase/chitin deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL75255.1" + /db_xref="InterPro:IPR002509" + /translation="MSDLFSKKLIKYILLVFTVFFILALPLVLILSATTSVFDDALES + LGKENGIKVPIVMYHGTIPKSKDLGKFVITPAELESDIKYLKNHGYTSITMTDLINYV + YNDTELPVKPVMLTFDDGYYNNYIYATPILENYNMKAVISVVGEFTEASTKIPENNVQ + YSYVTWEQIKNMNDSGIYEIQNHTYNLHKYGKKRFGAKKNKSESIEAYKNLLNSDVGL + LQQKLKESAGIEPNTFTYPFGYMCSDSVPILKEMGFKATLSCSEGVNIINRNKKDVLY + GLKRKNRPHGISTENFFKKFCP" + gene complement(1061372..1062409) + /locus_tag="Ccel_0884" + CDS complement(1061372..1062409) + /locus_tag="Ccel_0884" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: cpy:Cphy_2289 peptidase M23B" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL75256.1" + /db_xref="InterPro:IPR016047" + /translation="MARTKFFKIIVCFGLIVCILAGSTAILLRDNTGQVLSVSNEGYI + KWVEYNVPYEAMEKALSMDVKSHEKPVQLHWVEMLAYLATRYGGNFKMYKSKDLDELE + AKLNQGQTMEQLTANMKHYNYFYQAYDAILGNFVGEYDIQVKDPDNSDKTIWQKKYGL + KVFSPIARGYGFSHYDDFGTGRSFGFTRKHLGNDLMGSIGTPIMAVESGIVEAMGWNM + YGGWRIGIRSFDQKRYYYYAHLRKDRPFHGDLYEGKIVKAGDVIGYLGMTGYSTRENV + NNISTPHLHFGMQLIFDESQKESNNEIWIDLYNIVDLLQKNRSAVTKDEETRDFYRTY + DIIEPKMNYHF" + gene 1062637..1063491 + /locus_tag="Ccel_0885" + CDS 1062637..1063491 + /locus_tag="Ccel_0885" + /inference="protein motif:PFAM:PF00497" + /note="PFAM: extracellular solute-binding protein family + 3; + SMART: ionotropic glutamate receptor; + KEGG: swo:Swol_0316 extracellular solute-binding protein, + family 3" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 3" + /protein_id="ACL75257.1" + /db_xref="InterPro:IPR001320" + /db_xref="InterPro:IPR001638" + /translation="MGKGRIIKALAAAMALTFLVAGCGASGDSSKSSGTAASSNIAVD + ESWDKVKEKGELVMGLDENFPPMGFRDEDNNIVGYDLDLAKEVASRLGVKLKVQPINW + DSKDQELNTGNIDCIWNGFSINEERKENILFSDPYMKNNQVVVVMADSEYNTFGDLKG + KSVSLQAQSSASDALAKNAEFKNSLKDVIELKDNTLCLMDLKTGNTDAVVMDEVVARY + QIQMNSEKYRMLGESLAAEEYGVGFRKGDVKLMTKVNDTLKEMAKDGKITEISNKWFG + KDISIVEK" + gene 1063678..1064310 + /locus_tag="Ccel_0886" + CDS 1063678..1064310 + /locus_tag="Ccel_0886" + /inference="protein motif:TFAM:TIGR01726" + /note="TIGRFAM: polar amino acid ABC transporter, inner + membrane subunit; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: mst:Msp_0959 polar amino acid ABC transporter + permease" + /codon_start=1 + /transl_table=11 + /product="polar amino acid ABC transporter, inner membrane + subunit" + /protein_id="ACL75258.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR010065" + /translation="MKLVLLLLEGMVVSLQIFALTLIFAIPLGLVISFGRRAKHIIIS + GVTSIYISIMRGTPLILQLLVVYFAPSYVFDAKVGRFTAAVIAFILNYAAYFAEIFRG + GIESIPKGQYEAGEVLGFTKLQVFFKIILPQVIKRVLPPISNEVITLVKDTALVTVIG + VEEMFRIAQNASSRVSSVRPLFVAGAFYYVMNLIVAQVFTFAEKKLNYYR" + gene 1064339..1065100 + /locus_tag="Ccel_0887" + CDS 1064339..1065100 + /locus_tag="Ccel_0887" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: dsy:DSY3385 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75259.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MKMIQATDIYKSFDDNLVLSGISFEVNKGEVVAVIGPSGSGKST + LLRCINLLEKVDKGSITVEDDVMVSTNAQGRAVYAEKKKLREIRLKIGLVFQNFNLFP + HYNVLDNITAAPVSVAGVSKADAKKTAMELLVKMGLEDKANAYPCNLSGGQCQRAAIA + RALALKPDVLFFDEPTSALDPQLTNEVLKVIRQLAEEHMTMVVVTHEMNFAREVADRI + IFMDGGIIVEEGKPEDIFDNPKNERTRAFISGFSE" + gene 1065311..1065850 + /locus_tag="Ccel_0888" + CDS 1065311..1065850 + /locus_tag="Ccel_0888" + /inference="protein motif:PFAM:PF07883" + /note="PFAM: helix-turn-helix domain protein; Cupin 2 + conserved barrel domain protein; + KEGG: cno:NT01CX_1225 DNA-binding protein, putative" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75260.1" + /db_xref="InterPro:IPR001387" + /db_xref="InterPro:IPR013096" + /translation="MKIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSI + ATLMDILESLGTNIKDFFNESVNEKVVFKKDDVFTKEDRDLGYVIHWLVSNAQKNTME + PILMKLDPGGSSELDNPHDGEEFGYVVSGGVIVFLGAQKYKVKKGECFYFKPVTIHKI + VNAVKSQSVILWVSSPPSF" + gene 1065889..1066935 + /locus_tag="Ccel_0889" + CDS 1065889..1066935 + /locus_tag="Ccel_0889" + /inference="protein motif:TFAM:TIGR01187" + /note="KEGG: dsy:DSY1461 hypothetical protein; + TIGRFAM: spermidine/putrescine ABC transporter ATPase + subunit; + PFAM: ABC transporter related; Transport-associated OB + domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="spermidine/putrescine ABC transporter ATPase + subunit" + /protein_id="ACL75261.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005893" + /db_xref="InterPro:IPR013611" + /db_xref="InterPro:IPR017871" + /translation="MSENQPIILLKDVKKSFDDSQVLNSINLYILKNEFITFLGPSGC + GKTTTLRIIGGFEKPDSGDVFFEGKRINDLPPYQRKVNTVFQKYALFPHMNVYENIAF + GLKIKKMDKSTINKKVDEMLELVNLKGFQKRSVELLSGGQQQRVAIARALVNQPEVLL + LDEPLGALDLKLRKEMQIELKNIHKQTGITFVYVTHDQEEALTMSDTIVVMNSGSIQQ + IGTPQMIYNEPKNAFVADFIGESNIIKGRMIKDYTVEFANRVFECLDKGFSENEEIDV + VVRPEDIKLVSEEKGMISGIVRSVTFKGVHYEMLVEGQDYVWTIQSTQMVEAGSRVGI + VMNPNDIHIMKRMG" + gene 1066938..1067765 + /locus_tag="Ccel_0890" + CDS 1066938..1067765 + /locus_tag="Ccel_0890" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: aoe:Clos_2539 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75262.1" + /db_xref="InterPro:IPR000515" + /translation="MKKKWLSYPYLVWMAIFIVIPSLLILFYAFTVKDDQGFRFSLEN + FYRFCNPIFFSVLFKSLWLALLSTFVCLIVGYPVALILSSKEYSKKTTMSLLFIIPMW + MNFLLRTYAWLTLLEKNGIINSVLSFFHLPTINILYTNGAVILGMVYNFLPFMILPIY + TVLMKIDNKLVEAAQDLGGNWLTVFKRVILPLSLPGVMSGLTMVFMPAVTTFVISKLL + GGAQYTLIGNLIERQFLTVYDWNFGAAISIIMMIFILISIAIMSRFDEDKGGGAALW" + gene 1067759..1068580 + /locus_tag="Ccel_0891" + CDS 1067759..1068580 + /locus_tag="Ccel_0891" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: aoe:Clos_2538 ornithine carbamoyltransferase" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75263.1" + /db_xref="InterPro:IPR000515" + /translation="MVKRALMKTYLGLILIFMYLPIVVLIAFSFNKSKSRGNWTGFTF + KWYEELFKNSQIKDALYNTIVIALLSSVIAVVIGTLAAIGIHNMKKAKRTAVMNMTYL + PVLNPDIVTGVSLMLMFVFIGTFVNLKLGFFTMLLAHVTFNIPYVILCVLPKLKQMNT + NLYEAALDLGASSSYAFRKVIIPQIMPGIVSGFLMAITLSVDDFVISYFTTGSGVSNL + SITIYSMARTGVKPTINALSTLMFTGVLLLLVIINIRTDKEEKKKKSIKIHGMEV" + gene 1068582..1069634 + /locus_tag="Ccel_0892" + CDS 1068582..1069634 + /locus_tag="Ccel_0892" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cno:NT01CX_1229 extracellular solute-binding + protein, putative" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75264.1" + /db_xref="InterPro:IPR001188" + /db_xref="InterPro:IPR006059" + /translation="MKKIISRVLMMAATLSVSFALTGCGGASNDKITLKVFNWGDYIG + EEVIQKFEDKYNINVQYSIFTTNEDMYVKMKAGGGDYDVVIPSDYMIKKMINEGMVKK + IDLNNIPNYKYIDDKFKNLSFDPNNEYSVPYMWGTVGIIYNKTMVKEPVDSWNILWDK + KYDKQIFMLDSLRDSIGVTLKKLGYSLNTKNKDELERAKNELIKQKDIVQAYVGDEVK + DKMIMDEGAMAVVWSGDAVYMKSQNKDLEYVIPKEGSNLWFDSMVIPSNAKHQKEAED + FINFMCETEIALENTNYIGYSTPQTEAKKKVAPALLKDITAYPTDEQIKNCEVFIDLD + ASIKDYDKIWTEITSR" + gene 1069856..1070440 + /locus_tag="Ccel_0893" + CDS 1069856..1070440 + /locus_tag="Ccel_0893" + /inference="protein motif:PFAM:PF02915" + /note="PFAM: Rubrerythrin; + KEGG: ckl:CKL_2032 Rbr1" + /codon_start=1 + /transl_table=11 + /product="Rubrerythrin" + /protein_id="ACL75265.1" + /db_xref="InterPro:IPR003251" + /db_xref="InterPro:IPR004039" + /db_xref="InterPro:IPR009040" + /translation="MGKLSGTRTSENLARAFAGESQAKNRYTFYAKYAKKEGHEVIEQ + EFTQIIKNEEAHAKVFYDLLINGMGPDESNVNVDAGYPFELGDTLANLKAAAQGEHEE + NSKVYPAFADVAKEEGFPQVEAAFRMIAKIEGEHEKKFNQMAADLENQTLYKKATAVK + WICTNCGHIHEGTEAPGICPVCKYPQGWFQVVPS" + gene 1070633..1071832 + /locus_tag="Ccel_0894" + CDS 1070633..1071832 + /locus_tag="Ccel_0894" + /inference="protein motif:PFAM:PF00465" + /note="PFAM: iron-containing alcohol dehydrogenase; + KEGG: mta:Moth_1911 iron-containing alcohol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="iron-containing alcohol dehydrogenase" + /protein_id="ACL75266.1" + /db_xref="InterPro:IPR001670" + /translation="MWENKIDINQVVEIRAKTTTFFGVGAINKMADIAANLSGRGITK + VIVMTGKSSHIKTGAWDVTKKALEDNGIKYLLYSKVTPNPTVDQVDEATAEAETFGAE + AVIAIGGGSPIDAAKSVAILLAYPEKNATELYELTFVPDKAVPVIAINLTHGTGTEVD + RFAVVSIPAKEYKPAIAYDCIYPLFAIDDPSLMTKLPAEQTIYVSVDAINHVVEASTT + IVTNPLAILLAKETIRLVAKYLPIAIKEPDNLTARYYLLYASLIAGTSFDNGLLHYTH + ALEHPLSAVRPDLAHGLGLAMLLPAVVKEIYPASGEVLAEIFEPILPGLKGTADEADK + AFTGLRNWIESVGIKSHLRDEGFDDSVVDKLVNLAFETPSLDGLLALAPVKATKESVK + NIYVNSL" + gene 1072014..1072433 + /locus_tag="Ccel_0895" + CDS 1072014..1072433 + /locus_tag="Ccel_0895" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cac:CAC3321 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75267.1" + /translation="MKLEEVLTVNIKIKNAIDLKNDNGDSVVMISFTGDVKSKYFEGK + VLPGGIDTQVIGKSGDRHTLSARYMLEGKDYKGETCKIYIENNGNINNHLQGVLFRTY + PKIITDSKALDFLNHDLLLGEGFPAEGGVKIIIYRTL" + gene 1072646..1074466 + /locus_tag="Ccel_0896" + CDS 1072646..1074466 + /locus_tag="Ccel_0896" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: cth:Cthe_1232 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL75268.1" + /db_xref="InterPro:IPR000873" + /translation="MAKNGISITNEKDKRIVKGLGYYEISPVENIKELLKASIDTFRD + KTAFIYKSGTDIITKSYNSFGAEVAALGTALHSIGLKGKRIAVISENRYKWALSFFSI + VSGTGIAVPLDKHLPEVEIEKLIIRGEVDAIFYSNHFDAQMLSLAERMNSIEYFICMD + DIGENYPTNFTTIDRLLVQGESLIKNGDRSFTEASVDSEKLSVLLFTSGTTSISKGVM + LNQRNICADVSAVSSAIKVMPNDVHLSLLPLHHTFELSVGMIFMIKNGITIAYSEGIK + HIAKNLKEFNVTILVVVPAILEAMYKKMKEGIKKSGKSRQVAILAKVSKGLKSIKIDL + RRKFFKRILDQMGPGLRLAVSGAAPIDKEIIEGFDMLGLKVIQGYGLTETSPVVAANN + DFYNKAGTVGQPLFGIETAIYNPDENGMGEIITRGRNVMMGYYNDEAATKESIDEEGW + FHTGDLGYIDDEGFITITGRAKSMIVLTNGKKAFPEEYETILNNIEGIKESFVWGNEA + PDGDIQVCAKLVLNEDVLKEKYGRIPSEKELADIMQQEIKTLNRDIPQYKIIRYFIMS + YEELVKTTTLKIKRPVEYKKVKENLDNAGLTMRKANGKLF" + gene 1074607..1075968 + /locus_tag="Ccel_0897" + CDS 1074607..1075968 + /locus_tag="Ccel_0897" + /inference="protein motif:TFAM:TIGR00797" + /note="TIGRFAM: MATE efflux family protein; + PFAM: multi antimicrobial extrusion protein MatE; + KEGG: ctc:CTC00443 Na+ driven multidrug efflux pump" + /codon_start=1 + /transl_table=11 + /product="MATE efflux family protein" + /protein_id="ACL75269.1" + /db_xref="InterPro:IPR002528" + /translation="MQSLKLKNKEFYLKLFSLALPITIQNLISSSLGVVDSVMVGSLG + NQSLAAVGVANQYGLIVFLLYNAIHSGCGIYVAQFWGKNDHDNIGRVVNLDIAIAASV + SLILSAIGILLPEQIISVFNTDPVVISQGADFLRILSMSFVFASISFGFSVALRSIGK + STMPMIISASALALNTILNYILIYGRFGMPQMGVRGSATSTLIARIVEMILFLIAVSK + YFPLLKIRVSELMKVTKDLLGRVTKTMIPVILNEMCWGLGTVVYSIAYGRISTEAFDA + VQITNNVVNLFTVAAFGMASAAAVMTGHVIGAGEEKKGRQYAWGFVRLCIIGGFILGG + LLYLFSPSIVSLFKVSSDVLETSIILLAINAIILPIRFTNIVAIVGVLRGGGDASFAF + IAEGMTMWLIGVPLSFIGAFVLRLDVQWVVLMVMAEEIVKMICGVARLRSNKWIKNVV + REI" + gene 1076027..1076641 + /locus_tag="Ccel_0898" + CDS 1076027..1076641 + /locus_tag="Ccel_0898" + /inference="protein motif:PFAM:PF01926" + /note="PFAM: GTP-binding protein HSR1-related; + KEGG: cth:Cthe_0596 GTP-binding protein" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein HSR1-related" + /protein_id="ACL75270.1" + /db_xref="InterPro:IPR002917" + /translation="MIIKNASHEITAVKPIQYPVTGFPEIAFVGRSNVGKSSIINTLV + NRKSLARVGSTPGKTRQINFFDVNGEFYLVDLPGYGFANVSKEMKASWQNLIETYLYS + RKENFLKMVVMLVDIRHSPSKDDIIMYQWLKGFGLDTLIIANKVDKISRGQIHVRIND + IRKVLQLDDAEKVIPFSAENRFGLEKVLAEFDNVLSIPGEEQKD" + gene 1076656..1077909 + /locus_tag="Ccel_0899" + CDS 1076656..1077909 + /locus_tag="Ccel_0899" + /inference="protein motif:PFAM:PF04286" + /note="PFAM: protein of unknown function DUF445; + KEGG: mab:MAB_4085c hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF445" + /protein_id="ACL75271.1" + /db_xref="InterPro:IPR007383" + /translation="MEKYTYTDENEKLRKKLRLMKIIATSLLVFMTLIFIIFKRIEGR + GLLYSSIAAFAEASMVGALADWFAVVALFKHPLGLRIIPHTAIIANNKSRIARALSNF + VVSNFFTPDIIKAKLDKVSISETVAGYVEKNRDIIVKAIVVRLPSLADSFINDEKVGT + FIKKQLKNKAEDISLYPLLGKGLSPVVESGYHKPLVKGLLNATYKFISDNKDKTILVL + GGINKTFALPIIGDLVYRKILEFVIRQIEEIDTNEEAEINKLLMSVIPKLIDDMKNSQ + ELIDKGEALKGQILNSDVYNMAVNVLTEEILDYKNSYFENGTKLEEKVSLLIDTVVSG + INNNDTLRETIDNTVIGGVESIVSQYGDRVGSLIYETMEGWETKDMVDKMEVQVGADL + QYIRINGTVIGGLAGLVIHLLSQLF" + gene 1077933..1078790 + /locus_tag="Ccel_0900" + CDS 1077933..1078790 + /locus_tag="Ccel_0900" + /inference="protein motif:TFAM:TIGR01297" + /note="TIGRFAM: cation diffusion facilitator family + transporter; + PFAM: cation efflux protein; + KEGG: aoe:Clos_0392 cation diffusion facilitator family + transporter" + /codon_start=1 + /transl_table=11 + /product="cation diffusion facilitator family transporter" + /protein_id="ACL75272.1" + /db_xref="InterPro:IPR002524" + /translation="MDRFKITRLVAVFGIVANVFLLFIKLAAGFISRSQAMIADGFNS + AGDVFASVMTLVGNSIASKPEDSDHPYGHGKAEYIFSMIISISLMFVSFTIFKSSLSS + IINKASFTVSWFLIATAIITIAIKLSLFIYTSRIGKRMDNLLVIANSEDHRNDVFVTS + GTILGIIMGYLGFSWVDGAVGILISLWIFYTGIKIFISSFKVLMDTNMDPAFKENTLN + LIQSISGVDHVDSINAKPVGEGFILIIKVSVDGEMSVNESHKIAGKIKAKVKDIKGIK + DAVVHINPC" + gene complement(1078909..1079925) + /locus_tag="Ccel_0901" + CDS complement(1078909..1079925) + /locus_tag="Ccel_0901" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: aoe:Clos_2285 copper amine oxidase domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL75273.1" + /db_xref="InterPro:IPR012854" + /translation="MKNKRIIAGLLVVTILSLSSIPSLANYKENLKAVNIYEQIDTTE + NRPSFGSFTGTVKEIADFEGVEGSKFVLVENQEGQEANLIISNSTYVINNEKIDSGSV + ITGFYDVNAPMLMIYPPQYNIEVVNVTSSKVQCIKVDRFDKDLVSSDNFLKLNISKET + EIFSQDGKAFEGELANRNLVVIYGVSTRSIPAQTNPDKIVVLSEKAVEPIYNLTDEEK + AILSGNNAASMSIVVNNEAIEAPSAYTNKKGTFMVPLRAIAEYLGFNVSWEGKTQTVT + LGKGISLTIGKDYYIYMKTAPIQLGTAPEIVEGKTFVPLSFFKEVLGMNTANVSDSNI + VISD" + gene 1080114..1080659 + /locus_tag="Ccel_0902" + CDS 1080114..1080659 + /locus_tag="Ccel_0902" + /inference="protein motif:PFAM:PF02915" + /note="PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 + protein; + KEGG: drm:Dred_0588 rubrerythrin" + /codon_start=1 + /transl_table=11 + /product="Rubrerythrin" + /protein_id="ACL75274.1" + /db_xref="InterPro:IPR003251" + /db_xref="InterPro:IPR004039" + /db_xref="InterPro:IPR009040" + /translation="MKKFVCSICGYVHVGDEAPDFCPQCKAPKGKFIEQSETSEQWAD + EHRIGVAQGVDSEVLEGLRANFVGECTEVGMYLAMARQAEREGYPEIGAFYKLAAWEE + AEHAAKFAELLGEVVHADTKKNLELRAEAEAGACKGKKDLATLAKQLNLDAIHDTVHE + MCKDEARHGAGFKGLLNRYFK" + gene 1080988..1081371 + /locus_tag="Ccel_0903" + CDS 1080988..1081371 + /locus_tag="Ccel_0903" + /inference="similar to AA sequence:KEGG:CLC_2757" + /note="KEGG: cbh:CLC_2757 phage integrase family site + specific recombinase" + /codon_start=1 + /transl_table=11 + /product="phage integrase family site specific + recombinase" + /protein_id="ACL75275.1" + /translation="MRGLNRSVRKKGESWSFRLDFGKIDGKRKQIERSGFKTEKEANA + ALSEVLNEIYKTGVFTENKKVTFQQAYDEFLENEAPNTRKFTTIVRYKSLYKNHFQDI + APRYLFNITDKTIQEFINTKQRRVR" + gene 1081918..1082496 + /locus_tag="Ccel_0904" + CDS 1081918..1082496 + /locus_tag="Ccel_0904" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75276.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene 1082538..1083338 + /locus_tag="Ccel_0905" + CDS 1082538..1083338 + /locus_tag="Ccel_0905" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75277.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene 1083822..1084859 + /locus_tag="Ccel_0906" + CDS 1083822..1084859 + /locus_tag="Ccel_0906" + /inference="similar to AA sequence:KEGG:Mbar_A0786" + /note="KEGG: mba:Mbar_A0786 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75278.1" + /translation="MNMKSMIGIVLSIVMMSSLVACSNAKDSVNEVVEVTSSSTPSST + PSSTPSSTHSQRETPIVYMTTDISSKGLVEVYNALDWTPKGNVAVKLSTGEPPSSYYL + DPKLIKELVQSVKGTIVECNTAYGGSRISTAMHMQVAKDHGFTEIAKVDIQDADGSMS + LPVVGGTHLKENLVGSHFSNYNSYLVLSHFKGHEMAGFGGAIKNISIGIGSSEGKCLI + HTAGKSNTGIYGGEQDDFLEAMGDAGKAVSDSLGNGKNIVYINVMNNISIDCDCNGSP + AEPEIDDIGILASTDPVALDQACIDLVYAAKGSESLIGRIKDLNGLHTLEHAEKIGLG + CRTYKLVNIND" + gene 1084852..1085748 + /locus_tag="Ccel_0907" + CDS 1084852..1085748 + /locus_tag="Ccel_0907" + /inference="protein motif:PFAM:PF03773" + /note="PFAM: permease; + KEGG: mac:MA0366 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="permease" + /protein_id="ACL75279.1" + /db_xref="InterPro:IPR005524" + /translation="MIDILHREFIYLSYYFSVQLEQIFTYWLLGMIIGSAVSVFGKAR + IHRLFSGLQNKRLGILGIFLACCLGIASPLCMYGTIPIAASFSEKGMRDDWLAAFMMS + SILLNPQLIIYSAALGTKALIVRIVACLLCGFIAGLIINIFYREESFFNFSGFSEMKS + NDTDLNILLRFLKNFGRNVKATGLYFLLGILLSALFQRYVPADAFADLFGSNKGFGVL + MAATIGVPLYMCGGGTIPLLRQWIFDGMSMGSAAAFMITGPATKITNLGAVKIVLGTR + RFVLYLSYIIIFALLIGFLLNV" + gene complement(1085974..1087125) + /locus_tag="Ccel_0908" + CDS complement(1085974..1087125) + /locus_tag="Ccel_0908" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: pha:PSHAa1178 + L-arabinose/isopropyl-beta-D-thiogalactopyranoside export + protein (MFS)" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL75280.1" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MSQEKNFPWLILLIMSSVTFMGILSELVPSGILPQMSGGLDVSY + AQIGLLVSVYAIASAVGTIPLITWTIEMNRKRLLLILMLIFGVSNLIIALTSSYYITA + ASRLAGGIAAGVLWPMVSAYAMRLVPPHLHGRAIAVTMSGSTFGLGIGLPIMTTIGTE + FGWRTVFIVLSAVIFVIAILGKMYLPSVEGEKRTKTNSPFFIIRNKGVVVCLILTLLT + IMAHYGLYTYIAPLVSYFNFYGGIKIASTLFGIGTIISVVIAGKVVDTHLGSLIIFKL + TLALGTMLLFIVFQGMMFISHIAFLLWGVSFGALVTIFQAAVTKQVETGKDVATSLQS + STFNFGIVLGSALGGLILDNSSVFYIIFGTMALLVVPILLSISRKSIFS" + gene 1087341..1088597 + /locus_tag="Ccel_0909" + CDS 1087341..1088597 + /locus_tag="Ccel_0909" + /inference="protein motif:PFAM:PF07969" + /note="PFAM: amidohydrolase; Amidohydrolase 3; + KEGG: net:Neut_1722 N-isopropylammelide + isopropylaminohydrolase" + /codon_start=1 + /transl_table=11 + /product="Amidohydrolase 3" + /protein_id="ACL75281.1" + /db_xref="InterPro:IPR006680" + /db_xref="InterPro:IPR013108" + /translation="MKKFTNAIIYGYKDANEILVEKGVIKEIGRELGSADEVIDLGGK + LVIAPYVDPHLHLDYVYTLSELGQKGAGSGTLYEAIEIWPKFKEKLTVNSVKKLALKG + IKDEVSQGVQHIRAQTDVTDPNFTALKAMLELREELKNIVEIQIVAFPQQGMYTYKGG + RDLVEEALKMGADVVGGIPHYEPAREFGEKSVHDIVELALKYNKLIDVHCDETDDPQS + RFVELLNALVLMEDYGTKTTASHTCSFGSADDSYAYRMIDLFKKSNMNFISCPTENAY + LQGRHDSYPKRRGLTRVKEFMENEINIAFAQDSINDPWYPMGNGNMMNILDNGIHLAQ + IMSPEHIEKDLDLITSNGAQCLNIQDRYGLDVGKDANFIVVDGDSPFDVIRNRAGVLA + SIRKGEYLFKQNPVEYEVKLDLGVKY" + gene 1088637..1088873 + /locus_tag="Ccel_0910" + /pseudo + gene 1089200..1089940 + /locus_tag="Ccel_0911" + CDS 1089200..1089940 + /locus_tag="Ccel_0911" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; KR + domain protein; + KEGG: tte:TTE1472 dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75282.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /db_xref="InterPro:IPR013968" + /translation="MAKVAIVTGGSRGLGRAMVLRLGKMGYNVVMNYVSDSSGKECEK + NLEELRKMGVDGIYIQADASTYEGCETVVKAAVEKFGDKIDVLVNNAGVSNNAEFYKQ + DHADYEWLIRVNLLSVMHMTRLVLPYMVEAKKGNIINISSIGGLMGVINQADYCATKS + GIIGFTRALALEYASRNIRVNAICPGMIDTDILKGVNQDELNALAATIPLGKIGDPEC + IAGSMQYLIENDYTTGVYLTPNGGIHMP" + gene 1090385..1090639 + /locus_tag="Ccel_0912" + /pseudo + gene 1090776..1091003 + /locus_tag="Ccel_0913" + CDS 1090776..1091003 + /locus_tag="Ccel_0913" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75283.1" + /translation="MNAIGTYGDPEISFEIHGKNGEVALMTISRYDQVLKGVAYNGQY + KYHLLRIEEMEKEAQTKAKADQKEAATASGN" + gene complement(1091613..1091707) + /locus_tag="Ccel_0914" + /pseudo + gene 1091799..1092653 + /locus_tag="Ccel_0915" + CDS 1091799..1092653 + /locus_tag="Ccel_0915" + /inference="protein motif:PFAM:PF02517" + /note="PFAM: Abortive infection protein; + KEGG: msi:Msm_0803 metal-dependent membrane protease" + /codon_start=1 + /transl_table=11 + /product="Abortive infection protein" + /protein_id="ACL75284.1" + /db_xref="InterPro:IPR003675" + /translation="MKKLKEIILKYPFISSIIIVGVAIAITYIPLPSMLSQNMEIQLA + DYLSGIIEQIAVSIFLVIGLKKLGLYERAGFSLRIKSMWLVWPILLFILLNASDMLTG + EIKIDTTRPLVILAYLMVYLSTGFFEEILCRGLVYSLLINKWGRKRSGCYLAMILSSV + SFGMVHFIHYFLGDASLIATIAQAIYATFIGVFFVACVVRNHSIYPAIILHGIVDIAG + SLRQIAVGGGINKGYITMPLEWAVVYVIIALPLFLYGLFIVRKEYRNGIIKSGQVMNY + LEVVEDWV" + gene 1092650..1093345 + /locus_tag="Ccel_0916" + CDS 1092650..1093345 + /locus_tag="Ccel_0916" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: ckl:CKL_1682 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL75285.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MMQKNMLVVDDDEDIREMIGTYFTREGYKVCFASDGKEGLELAK + QNNYAIILLDVMMPQMDGYTMLANLRLFSDTPVILLTAKGEQMSKVKGFTKGCDDYLV + KPFDFAELSLRIQAILKRVNDVVIKEEPNILIVKDLKIDLEGHSVKKNGIELELTSKE + YKILRILASNRGRVYSTKMLYEIIWKEPFLENDNSVITHMRNLRDKIGDKVKDSRYIR + TIWGTGYKIEKED" + gene 1093353..1094696 + /locus_tag="Ccel_0917" + CDS 1093353..1094696 + /locus_tag="Ccel_0917" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: ckl:CKL_1681 two component sensor kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75286.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MELVFIMLLSLIIAFTVAILIRNIGFEFHKESKEKRISQRYEEC + IIELEDKLLKVDMKDVNKINAILEENYSQLVGYEFYVVDENGRVISSSTPAMLEIDKV + RIIDGARDYQISKSDANVFKITGCDSIKNGYYLYYTYLYFDENDTRMVAGALIGAVIC + FFFLIWGRISYISTIRLSVDKMTQGDLSEKVPCCYKNELRGLAEDINKMAEALENEEQ + KKNEFLTNISHDIRTPLTTILGYLNMIKNKNYDSEEALQGYIRIMERKGKFLASMLED + FFQYSKLASHDISIKYTKLDLNELLRQMKEDEEEEFLAKELKLELQLYPEVIYCMGDP + ELLARVVGNLLSNSIKYSQMNTSVLMKSSIEKVNYINYGVFSISNVPQESISEEEVSR + LFERLYKRDNARKEEGSGLGLSIANNIIKLHGGKIEGHFVEERLIFKVYVRMQKL" + gene 1094826..1094913 + /locus_tag="Ccel_0918" + /pseudo + gene complement(1095197..1096243) + /locus_tag="Ccel_0919" + CDS complement(1095197..1096243) + /locus_tag="Ccel_0919" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75287.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(1096520..1097695) + /locus_tag="Ccel_0920" + CDS complement(1096520..1097695) + /locus_tag="Ccel_0920" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: cth:Cthe_0912 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75288.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MFCKKGFKKSLCFILSGILTLSLVAATNTSVSAADASEKVFKPL + PYEYKMNSSKQGTIERLSYRWGNDTKYFNVYLPNGYSQSDTSKKYNVVYLMHGGGEDE + NLLFGGPGQNKELKVIIDNMIAKGDIKPVIVVTPSFYKGNNDVAGFPQELTTSVIPLV + ETKYNTYLKSNSAADMKASRDHRAFGGFSMGSVCTWYTFINCLDYVKYFMPLSGDCWA + LGSTAGSSKPGETAQYLADVVKKSGYKAPQDYKLFCATGDGDIAYPNMKPQIEAMKKY + TNTFIYSSDVKNGNFYFMVANGGTHAWNWINQYIYNILPDLFQDIEPIQTLGDLNSDG + SVDATDYALLKMHMLNVAPLTGDALKNADVDRNGQVDSIDFAMIKMYLLGTISSFPV" + gene 1097940..1098020 + /locus_tag="Ccel_0921" + /pseudo + gene 1098275..1100443 + /locus_tag="Ccel_0922" + CDS 1098275..1100443 + /locus_tag="Ccel_0922" + /inference="protein motif:TFAM:TIGR01056" + /note="KEGG: dsy:DSY4907 DNA topoisomerase III; + TIGRFAM: DNA topoisomerase III; + PFAM: TOPRIM domain protein; DNA topoisomerase type IA + central domain protein; + SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase + I DNA-binding; Toprim sub domain protein" + /codon_start=1 + /transl_table=11 + /product="DNA topoisomerase III" + /protein_id="ACL75289.1" + /db_xref="InterPro:IPR000380" + /db_xref="InterPro:IPR003601" + /db_xref="InterPro:IPR003602" + /db_xref="InterPro:IPR005738" + /db_xref="InterPro:IPR006154" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR013497" + /translation="MGFTLILAEKPSVARDLAKVLNCGQNANGYIMGKKYIVTWALGH + LVTLADPEAYGNKYKTWNLEDLPMLPNKMELVVIKQTAKQYGVVRGLLNRADVDELVI + ATDSGREGELVARWIIMKAGFKKPIKRLWISSQTDKAIKEGFAKLRPSKEYDNLYYSA + QSRAEADWLIGLNVTRALTCKYNAQLSAGRVQTPTLAMIVEREEEIRKFRPKDYWTIS + AQFNGFTVQWQDSRNNQTRTFNKEEADGIVAKITGQMGEVVEVKKETKKELPPLAYDL + TELQRDANKKFSYSAKQTLNIMQRLYESHKLVTYPRTDSRYITDDIVPTLNERLKSIA + VGPYAKLVQGVMRNKPSVTKRFVDNSKVTDHHAIIPTEQFVDLFSLNSEERNIYDLIV + KRFIAVLSKPFEYEQTTVKLDIAGESFYAKGKIVKSSGWKTVYDGFGKLDEDDEDDND + QSLPDIQKGHKAKVVGPKSINGKTKPPARYTEATLLSAMEHPGKFVDNKALKEALEST + SGLGTPATRADIIEKLFNTFYIERKGKEIYPTSKGTQLISLVPTDLKSPELTAKWEQQ + LTLISKGKVNSNVFVNDMKKYARKLVGAVIASSEQFKHDNVTREKCPECGKYLLEVNG + KKGKMHICPDRECGYRKSVTVISNARCPECHKKMEIRGEGENKSFYCSCGYREKLDAF + KKRKGQQVDKREVAKFMRQQEKDENINSALADALAKWKNN" + gene 1100519..1101328 + /locus_tag="Ccel_0923" + CDS 1100519..1101328 + /locus_tag="Ccel_0923" + /inference="protein motif:PFAM:PF06508" + /note="PFAM: ExsB family protein; + KEGG: cth:Cthe_1841 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ExsB family protein" + /protein_id="ACL75290.1" + /db_xref="InterPro:IPR004479" + /db_xref="InterPro:IPR005232" + /translation="MSVFDKLDFLKTNIKALGSAAVAFSGGVDSSLLLKVAYDVLGNG + VVAVTAHSSTYPEREMNEAKEFTANYGIKHRIIDSDELEVKGFSDNPVNRCYLCKNEL + YDKIQLVAKEENVKYILEGSNHDDLGDYRPGFQAVSEHGVLSPLKDALLTKDEIRFLS + KEMGLKSWDKPAFACLSSRFPYGEKITHQRLRMIDRAEQLLLDLGFKQVRVRFHGDIA + RIEVGQEQFLKFTDNEIREKVYSEFKKIGFMYTALDLKGYRTGSMNEGLTL" + gene complement(1101418..1101864) + /locus_tag="Ccel_0924" + CDS complement(1101418..1101864) + /locus_tag="Ccel_0924" + /inference="protein motif:TFAM:TIGR00738" + /note="TIGRFAM: transcriptional regulator, Rrf2 family; + PFAM: protein of unknown function UPF0074; + KEGG: cth:Cthe_1558 BadM/Rrf2 family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, BadM/Rrf2 family" + /protein_id="ACL75291.1" + /db_xref="InterPro:IPR000944" + /translation="MRISSKGRYGIAAMICVAQLGRNGDFVTVISISEKLGISKIYLE + QVFSLLKRSKLVNSVKGSQGGYHLAKSSERITAYDILQAVELSLFEKTERSVSAQAEG + IEKSISSLVWDKLDESICEVLKNTTLRDLVFEAERNPDDDSYMYYI" + gene 1101942..1102087 + /locus_tag="Ccel_0925" + /pseudo + gene 1102654..1103067 + /locus_tag="Ccel_0926" + CDS 1102654..1103067 + /locus_tag="Ccel_0926" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75292.1" + /translation="MKTIKSITFLLVLTMFFTLALAACGESDTVSYYIISDKQYTEKA + DLENAAQPEQLTAGQDVYASVYFIESPKGMEYTAKWSINGNVVKTDKQKMHTDKSGMI + VFSLEGDKVIAGTLKFEISYGGHTLASKELVIAEE" + gene 1103078..1103632 + /locus_tag="Ccel_0927" + CDS 1103078..1103632 + /locus_tag="Ccel_0927" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 + type 2; + KEGG: lsp:Bsph_1728 RNA polymerase sigma factor SigX" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL75293.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MNKAENRKEEKFISLYQAFVDDIYRYIFLRTGLDTTLAEDMTQE + IFLNVFKGMDEFKGLCSNRTWVFRIAKNRLFDFYRKQYRQKIEFADIDDPLTEGLSDP + EQDTEKLMESALESQMVCDCLNNIPGHYRITLMMKYVDGKSVKQIAELTDKSPKAIES + LLHRSKNAFIKEYRLLRKKEGFEL" + gene 1103629..1103886 + /locus_tag="Ccel_0928" + CDS 1103629..1103886 + /locus_tag="Ccel_0928" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75294.1" + /translation="MKKDKKVYTILENSALPTKQQKEKILDQILFEYRKIYVSPAEKL + LKLIIVYPWRFAFSFSTLQAVICTMIWGTGYTNMILRVFGG" + gene 1103891..1104454 + /locus_tag="Ccel_0929" + CDS 1103891..1104454 + /locus_tag="Ccel_0929" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75295.1" + /translation="MNSFFEILNHPMEAFRNKNKAATWLLVVFTIIIDTVFIPLMDWF + ADAQHPTPSIYMILRTTLWGCVSYLAICVVFWAICKYLGSKTRLKTYIQTWGLTFFPT + LLCSFAVAFSETFFTVFWNNSIWGILLSIVFIGILIWKTILYVIFLREVAGLKGNRII + GAFVVIGIMIIALALFNGYVGLKTPIL" + gene 1104725..1106338 + /locus_tag="Ccel_0930" + CDS 1104725..1106338 + /locus_tag="Ccel_0930" + /inference="protein motif:PFAM:PF00245" + /note="PFAM: Alkaline phosphatase; + KEGG: dsy:DSY4404 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Alkaline phosphatase" + /protein_id="ACL75296.1" + /db_xref="InterPro:IPR001952" + /translation="MIKKALSSKRLFTGLLCLTMAMVLALGTAFSSANESNSGMQNRA + VASSTAEAALKATATTTKTPKYIFMFIGDGMAAAQVNLAQIYKGNNKHNQISLKELSF + QDFEAVGYQTTHDATSFAPDSASTATSLSSGFKTWSGTIGLKPVGNKSGNKPENVNSS + NIPQTIAERLKAEKGMKVGIISTVTINHATPAAFYAHVPSRNDYYDIAMQMAKSNFDY + FGGGTINQPTGPKKDQKDAYEVMKQNGYTIAKTKKDILALNSKSGKVYAITPVVQDSG + AMPYAIDNKAGDLTLADFVKKGIDVLDNEKGFFMMTESGKIDWAGHANDAKANIGDVL + AFDNAIQVAINFANKHPDETLIIVTGDHETGGMTIGQATTGYDTAFELLDHQKMSYVA + FDNLINEMKAKNPKLSFNKVLSVITENFGLVNETTGDISRKGEPSYMTLELSDREMSK + LKTAFAETMAEEPTDNEETDLLYGGYNPLSVTLTHILNNKAGIGWASYSHTGVPVPVY + ATGAGAELFNGAYENTDVYNKLVKITDLK" + gene 1107142..1108413 + /locus_tag="Ccel_0931" + CDS 1107142..1108413 + /locus_tag="Ccel_0931" + /inference="protein motif:PFAM:PF00331" + /note="PFAM: glycoside hydrolase family 10; cellulosome + protein dockerin type I; + KEGG: hau:Haur_4805 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 10" + /protein_id="ACL75297.1" + /db_xref="InterPro:IPR001000" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MRKNSFKSLAVALSVLLTALMVCSSMVSAATPTGKRLKDVQSRV + LVGTEFSSGFTNMDSTFFNTATPEFNLVTAENCMKWDALEPSQNSFNWNEADKLMNWA + KTNNYKVHGHTFVWHNQAPGWIQNLSASAMESAMNNHIDKVMGRYKGQIPIWDVANEV + FEENGSYRNSFWYRTMGKSFIEKAFIRARAADPSAKLVYNDYNLEYTGPKSNAAYEML + KDFKSRGIPVDGIGFQMHLDIQYAIDYNDFAKNMQRFADLGLEIYITEMDVRVSSNTN + STELQTQASYYKNIIEKCMAQPAVKAIQFWGFTDKYSWVPGTFSGRDNALLFDKNYNP + KPAYYAVQAALATSPTPTVIYGDLDGSGSVDALDYSLMKQYLLGSITKFPSENGLVAA + DVNASGTVDALDFAVMKQYLIGLITKFPAQV" + gene 1109161..1110702 + /locus_tag="Ccel_0932" + CDS 1109161..1110702 + /locus_tag="Ccel_0932" + /inference="protein motif:PFAM:PF02786" + /note="PFAM: Carbamoyl-phosphate synthase L chain + ATP-binding; Carbamoyl-phosphate synthetase large chain + domain protein; biotin carboxylase domain protein; + KEGG: mja:MJ1229 pyruvate carboxylase subunit A" + /codon_start=1 + /transl_table=11 + /product="Carbamoyl-phosphate synthase L chain + ATP-binding" + /protein_id="ACL75298.1" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR005481" + /db_xref="InterPro:IPR005482" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR011764" + /translation="MIKKVLVANRGEIAVRIFRTLREMEISTVAVYSDDDRDSIFVRY + ADYSYPLEGNSAKDTYMNIEKIIKIAIEAKVDAIHPGYGFLSEKEEFAKAVEDAGLIF + IGPSAQVIKLLGNKFEARTIAERLSIPLIPGLNRAINNIAEAEQIASSIGYPVMIKPA + AGGGGKGMYIAKSKDELKDAFFKSQSMAESIFHNDSVFIERYYTDVHHIEVQLLADKY + GNVVHLGERECSIQRRFQKIVEEAPCLTISQELKNEIFEYAVSIAKEVHYTGAGTVEF + LYSNGEVFFLELNTRIQVEHAVTEMVTDIDIVKMQVLIAAGNELPINQNDISFKGHAI + ECRIYSEDIKNGFMPSSGAITYYQAPDGMGIRVDSGIAQNSFISHYYDSMIAKLIVKG + NTRQEAICRMSRALDEFIIEGVKTDIDYLKAIMKDTSFINLEVNTDYLKEKHEDLIIT + TEKTKPGKKIHNQQNYEYYNYMCKQNEKRINYKTETMSLDSKENLLQQFIDEISMPSE + LSIDG" + gene 1110742..1111179 + /locus_tag="Ccel_0933" + CDS 1110742..1111179 + /locus_tag="Ccel_0933" + /inference="protein motif:PFAM:PF00364" + /note="PFAM: biotin/lipoyl attachment domain-containing + protein; + KEGG: cno:NT01CX_0927 acetyl-CoA carboxylase, biotin + carboxyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="biotin/lipoyl attachment domain-containing + protein" + /protein_id="ACL75299.1" + /db_xref="InterPro:IPR000089" + /db_xref="InterPro:IPR001249" + /db_xref="InterPro:IPR001882" + /db_xref="InterPro:IPR006162" + /translation="MNIEQIKELVKIVNSSNVNIIEINEGDNRIRIEMERQKIESVSK + SELQLNTVIDSNEVNADSVSVNTSTKEIKAPLVGIFYTAPSSKDKDFVATGDKVIKGQ + VVCIIEAMKLFNEIVAEEDGEIVEICAQNGDVVEFGQPIFRYI" + gene 1111197..1112573 + /locus_tag="Ccel_0934" + CDS 1111197..1112573 + /locus_tag="Ccel_0934" + /inference="protein motif:TFAM:TIGR00514" + /note="TIGRFAM: acetyl-CoA carboxylase, biotin + carboxylase; + PFAM: ATP-dependent carboxylate-amine ligase domain + protein ATP-grasp; Carbamoyl-phosphate synthase L chain + ATP-binding; Carbamoyl-phosphate synthetase large chain + domain protein; biotin carboxylase domain protein; RimK + domain protein ATP-grasp; + KEGG: cbf:CLI_3821 biotin carboxylase" + /codon_start=1 + /transl_table=11 + /product="acetyl-CoA carboxylase, biotin carboxylase" + /protein_id="ACL75300.1" + /db_xref="InterPro:IPR003135" + /db_xref="InterPro:IPR004549" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR005481" + /db_xref="InterPro:IPR005482" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR011764" + /db_xref="InterPro:IPR013651" + /translation="MFNKILIANRGEVAVRIIRACKEMGISTVAIFSEADRHALHVTL + ADESYCIGPAQTGKSYLNMVAIITVAIACNAQAIHPGYGLLSENAKFVSLCEKCNIVF + IGPSADIISKMGDKDNARRMMQNASVPVIPGSDIIENPKDAIKIANDIGYPLLIKARA + GGGGKGIRLVNKEDEFESAYLTASSEAKSAFGDGACYIEKYLSPVKHVEMQILCDNYG + KVICLGERECSLQRKHQKLVEESPSTAIDTELRKKMMEVSVKVAKATNYTGVGTVEFL + LDKDSNFYFMEMNTRLQVEHPVTEMVTGIDIVKWQIRIAAGMPLNVEQENIQVKGHCI + ECRINAENPLMNFRPSSGNISLLHIPGGPWVRFDTAIYQDYYVPPFYDSMLGKLIVYG + RTREESIRKMMVALSELVIEGIEHNSLLHMNIISSQIFREGSYSTDPIHIENILNEMK + NGNGATIC" + gene 1112567..1113433 + /locus_tag="Ccel_0935" + CDS 1112567..1113433 + /locus_tag="Ccel_0935" + /inference="protein motif:TFAM:TIGR00515" + /note="TIGRFAM: acetyl-CoA carboxylase, carboxyl + transferase, beta subunit; + KEGG: efa:EF2876 acetyl-CoA carboxylase subunit beta" + /codon_start=1 + /transl_table=11 + /product="acetyl-CoA carboxylase, carboxyl transferase, + beta subunit" + /protein_id="ACL75301.1" + /db_xref="InterPro:IPR000438" + /db_xref="InterPro:IPR011762" + /translation="MLKKISFKKLELKPELENKNESTIIPCAPKELLLICPKCKKTLL + KSELADNLDVCRECGYHFRISARKRIGITVDNETFVEYDRELRSKNILNFPGYDEKLK + TAIKENGENEAVICGIGKIEGFECAIFAMEPFFMMGSMGCVVGEKIARLFELATDKSI + PVIGFTVSGGARMQEGIMSLMQMAKISGAVKRHSNNGNLYVAVLTDPTTGGVTASFAM + QGDIIVSEPDTLIGFAGPRVIEQTIRRSLPDGFQRAEFLMERGFLDSIVGRNELKKYL + GNILMLHNVEAR" + gene 1113433..1114215 + /locus_tag="Ccel_0936" + CDS 1113433..1114215 + /locus_tag="Ccel_0936" + /inference="protein motif:TFAM:TIGR00513" + /note="TIGRFAM: acetyl-CoA carboxylase, carboxyl + transferase, alpha subunit; + PFAM: acetyl-CoA carboxylase alpha subunit; + KEGG: ctc:CTC00135 acetyl-CoA carboxylase carboxyl + transferase subunit beta/alpha" + /codon_start=1 + /transl_table=11 + /product="acetyl-CoA carboxylase, carboxyl transferase, + alpha subunit" + /protein_id="ACL75302.1" + /db_xref="InterPro:IPR001095" + /db_xref="InterPro:IPR011763" + /translation="MSAYDKVMAARSKDRPTSKDYIKNIFTNFTEFHGDRRFGDDNAV + VAGIGLLGNRPVTVIALEKGQDTKERLSRNFGSAHPEGYRKALRQMKLAEKFNRPVVC + FIDTSGAYCGIGAEERGQGQAIAENLITMIDLKVPIISILIGEGGSGGALALAVADEV + WMLENAIYSVISPEGCASILWKDSARVKEVAECLKLTADDLYSLGVTDMVIKENGGDF + IRVYEDLSNKILHSINKYYEFSADKLVKMRFEKYQRLGMITQ" + gene complement(1114950..1116124) + /locus_tag="Ccel_0937" + /pseudo + gene 1116382..1117872 + /locus_tag="Ccel_0939" + CDS 1116382..1117872 + /locus_tag="Ccel_0939" + /inference="protein motif:PFAM:PF01593" + /note="PFAM: amine oxidase; + KEGG: cpy:Cphy_1763 FAD dependent oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="amine oxidase" + /protein_id="ACL75303.1" + /db_xref="InterPro:IPR002937" + /db_xref="InterPro:IPR003042" + /translation="MKKVLIVGGGISGLSAGVFSRLNGFDTEIFEAQAKPGGECTSWK + RKDYIFDGAIRWLIGTKKGTAAYDMFKTLGAFEDDKIVVEEIFLTVEHNGKKLYFYRD + VDKLKEHLLEVAPEDTEMIKELCKFAKKAKSFETPVDKHMPEMTIFDNIKFSMKMSSM + GPIMMKYGKVDGIDYFKKFKSTLIRNALKTLALDTFPAYAPIALLGTVVSYDGGWPLG + GSAGVSDNICNKFKELGGTIHLSSPVKRVIQENGKAVGIELDNGQVVKGDYVISSTDI + SITLNKLLEGKIKDEAYNEILNSNSGEYTFASCVFVSLGIAADLSEDVSPLVVSLNKE + LKIGNDLIGDIYVNTFKHEKSFTPEGKTAAVVTMDVYDYNYWKKLYDTDVNKYKSEKE + RIAKAIIEQIEIIYPKAKGNIEVAEVATPVTYNRIYGAYKGAWMGYGRKVSAKYRNHK + CKLEGIDNFALAGQWISSPGAVTISASTGKFAVQEICKQADIKFRS" + gene 1117904..1117996 + /locus_tag="Ccel_0940" + /pseudo + gene complement(1118193..1119074) + /locus_tag="Ccel_0941" + CDS complement(1118193..1119074) + /locus_tag="Ccel_0941" + /inference="protein motif:PFAM:PF01261" + /note="PFAM: Xylose isomerase domain protein TIM barrel; + KEGG: atc:AGR_L_260 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Xylose isomerase domain protein TIM barrel" + /protein_id="ACL75304.1" + /db_xref="InterPro:IPR012307" + /translation="MKHGIYYAYWEQEWEADYKYYIEKVAKLGFDILEIAASPLPFYS + DIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVH + LIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLI + NTAQEGVDFVKQVDHNNVKVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGECNRKVP + GRGRIPWVEIGEALADIGYNGSVVMEPFVRMGGTVGSNIKVWRDISNGADEKMLDREA + QAALDFSRYVLECHKHS" + gene complement(1119107..1120480) + /locus_tag="Ccel_0942" + CDS complement(1119107..1120480) + /locus_tag="Ccel_0942" + /inference="similar to AA sequence:KEGG:Cphy_3243" + /note="KEGG: cpy:Cphy_3243 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75305.1" + /db_xref="InterPro:IPR000103" + /translation="MKTLQKKYDVVVIGGGPGGIPAAIAASRNGAKVLLVEKNGYLGG + NLTIGLPLLGYLDKDGNPVTAGIAQELVDELKKRNSCTDHYPCPMHNSVTLYDHEIFK + VVAFEMCLNAGVEILLHTEIIDTNVENGKIKTVTLFGKGYHIEVEAAVFIDASGDGDM + GYMAGATYNMGQKDTGALQPPTLMFTLGNVDTDKTIEFIASDPEQMRLCNTIECDFDK + YNADFFRSNPYHVMVGLRKLFLELKAKGELPVDRDTLIYIKSLIPGEVHINSTRHLGI + NGSDVLDLTRSEIEGHLQIPKLVETLKKHVPGFENCYITQIYPSMGIRETRRFEGICE + LTEDRIIVGDVPEDTVALGSYIIDIHEAKGAGTIVKRIKPYGIPYGCTVSKDIGNLMF + SGRCASLDAVVMSSARVMPTCMAIGEGAGVGAALAVKHNILPAQVNVKEVRKILRNSN + VILEPAE" + gene complement(1120538..1121911) + /locus_tag="Ccel_0943" + CDS complement(1120538..1121911) + /locus_tag="Ccel_0943" + /inference="protein motif:PFAM:PF01266" + /note="PFAM: FAD dependent oxidoreductase; + KEGG: rle:RL3853 putative protein involved in invasion" + /codon_start=1 + /transl_table=11 + /product="FAD dependent oxidoreductase" + /protein_id="ACL75306.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR006076" + /db_xref="InterPro:IPR013027" + /translation="MSEIQYTKIIKNVIETDVLVIGGGTAGFGAAIAAARNGAKTLLI + ERLSIIGGMATAGLVGPFMTCYDNDAEEQLVKGIFDELCLRTEARGGAIHPSKVEGMT + SFSSYYMASHRHVTPYQSEVLAVVMEEMLLESGAQILFNVQVTDCITKDKKIDYVIVN + MKEGIAAIRAKLFIDCTGDADVAYFAGVPTWLGNKETGIMQPTSLFFEVGNIDREKYL + GELEANKSNLDNHVANCFAKYVEEAKRNGDWTLDRNELGNYEQNILGRWKINTTRIAH + IDATKTSDITKALIEGRRQVQEVIAFMKKYLPGCENVQLIQVATALGVRETRHIVGKY + ELTAEDILSRKHFDDAICTFGYAIDIHNSTGGGVTFTCVDKYYTIPYRCLIPENCDNM + LVAGRSICGSSEAAASFRVMPACVAMGQAAGTAAAIALKSGVCPENVDIVKLRNTLIE + QGAVIKD" + gene 1122427..1124046 + /locus_tag="Ccel_0944" + CDS 1122427..1124046 + /locus_tag="Ccel_0944" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: cpy:Cphy_2007 two component AraC family + transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75307.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYKAIIVDDEDLVRQGLKKHFDWSDHNIEIVADLSDGQKAFQYV + KDNHVDLVLTDVLMPYMDGITLAKNLRELYPEIKIIFISGHDDVSYLKNALKVEAVDY + ILKSIDLDELKDTVSRVVNTMNTENQSKKTMADMENLLNQSFPLLQERFFITMIRDDF + ENPDIMKERIAFLNIPLNDEMYYCVLVVQIQRIYSKFHVLTERERQILSLQIQNECTE + VGKQYSDTICFENKQGEYVMILSLLEDEYEETLLEVSENLDKRLNGYMNLPVSIGISD + RFKGLENIKASYENASNSISKRYLLDDELTISVDKYEMDESLKEYKERAKKSLQECLS + SGNTEQVSEVLRELFHIIREKFPDDEEQNLMIFLLLLPTRIVTDIKINKKSDYSNQRM + ILEKFLCCADFEEQCLLIQKLYFEVATLMSSMSKTYSHTIINQVRKTIEERFKEQISI + STLARDVYLTPTYLCVLFKQVTGTTINDYLTLTRLEKAKKLLSDPYIKLYDVCYEVGY + LSPSYFSRLFKKYTGISPSEYRNVAIASSEQ" + gene 1124086..1125888 + /locus_tag="Ccel_0945" + CDS 1124086..1125888 + /locus_tag="Ccel_0945" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase internal region; + KEGG: cbe:Cbei_4677 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75308.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR010559" + /translation="MNRIKLREKISKRIIYSDNMRLSKRAIALFAFSVVIPLTIIVYL + YSIHSANIIENELSNNMQLAVSQIKNNLDYRFEQISESALSILSTAYPYIRSGSTSVE + TQLKEYDELKSLVSAYEGKHMISKVRLYVPSGKIYANQQETFYSLPELTDQSRETYQR + GVIWLKTYGSRIYEGRGLTNIISCRMTISSKTNYDEIASILQLDIEETKLSRIFSAGI + SIDEEIYLVDSDGVIISHPDSALIGKNGLSNTELSTVLLKKTGHLSGNMSQNADLVAF + SKLSATDWYLVMRLPATAVYGSDVFSFDVMRALLIIAVVVVFVISLILIYSSIIENTI + KRINNAIMVLNNEGIDQVDSTLSKNNNKSLALLENNANQLVVTIKRLMEESYEAKLKA + RDYQLKALQAQINPHFLYNTLDSIKWMILEDHKKDSIWMINAFSKYFRLSLSKGRDVV + TLHDELELIQAYIGIMQKRFSNISTIDINIEDNLKECLIPKLSLQPLVENALNHGILH + KQASDGQLVITAKEENGKLEIIIKDNGKGMSLEQLERLLNEENSNTKGYGLGNVDERL + KLFGGDDCGLTVSSELNIGTTVTLSLPLRYMDQE" + gene 1126262..1127230 + /locus_tag="Ccel_0946" + CDS 1126262..1127230 + /locus_tag="Ccel_0946" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_3242 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75309.1" + /db_xref="InterPro:IPR000515" + /translation="MKMIASKSKAKNEIQKHSKLGAYLKEHYLMYLMLLPGLFFLIVY + KFLPLYGITIAFKDYSIFAGNNPLDAIAKSEWVGLQHFERLFASSAFIKVLFNTLIIN + LYKILFLFPIPIVCAILLNEIRNKVYRKLAQTAIYVPYFFSWVVTFGIFYSLLGTYGI + VNTGLAAFGFERISFFADTNVFRGLLVFTEGWKEVGWNTVIYLAAITGIDISLYEAAR + VDGASKIRQIWHITLPGMASTIVLMLILKVGYILDTGFEQILVFYNATVYDVADVIQT + YVYRMGLGQSDFALGTALGLFNSVVAFILIVGANSVCKRLLHRSIW" + gene 1127266..1128162 + /locus_tag="Ccel_0947" + CDS 1127266..1128162 + /locus_tag="Ccel_0947" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bsu:BSU07120 transmembrane lipoprotein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75310.1" + /db_xref="InterPro:IPR000515" + /translation="MLLKKKKTGIPLEASEKVMVVISYIVMSILALCAILPILHVLSK + SFSSASAVTSGSVLFWPVDIQFETMEYVLKETTFLHSLKNTVIVTVVGTIISMAVTIT + TAYPLSKPSFKGRKVFIMLYIISMVFFGGIIPAYMVVRTLGIIDTFAALILPFFIVHF + NMFIVKNYFEGLPESVEESAKIDGASDVRILISIVCPMSKPVLATVAMLYAVNYWNNY + FHAVMYTNSTEMQTLQLFTYNTISNTQTIVERLVAGNFSNVSIDGIVSAVVVLSLIPI + VALYPFVQRYMVQGITIGSVKG" + gene 1128233..1129810 + /locus_tag="Ccel_0948" + CDS 1128233..1129810 + /locus_tag="Ccel_0948" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cpy:Cphy_3240 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75311.1" + /db_xref="InterPro:IPR006059" + /translation="MKKIFVLFLAVLMIVSSLAACGQSSNSTPSNTSTAGTATGAKAL + DGEKPELKYLGYNVSFDPNTDGMAKIYEEKTGYKVKYNVLPAENADEKLLMEVASGAD + YDVIQVSVSQFQTLLSQGALKPLSDLLDKYGQDVLKGVNEDSWKACSGSDGKIYGIPY + KYPYPTEITTFMVARMDLMKAAGINELPKTIDEFYNTLVTLKKFYGDKYIIFTGPFRA + ASEASVNWDIPQSITSAFGIYNDWMVDENGKVYYMTEHKNFSKMIEFMQKLSKEGLID + RDWAVNNTTTVNEKLSAGKAIIAASNRVGVAVTTPIMTGKDGLGLKNEDLGYIGALAG + SDGTCKYMKTEAINQVTCILKSSKNAEHVINWVNVKQQNQLYLNIGVEGTHFTYDADG + SIKPINPIFSEERGNSYWYLNSTNEEEFAKQWPSRVRKSDAMWAAFDAVTNKANKDTP + DIFVDNTFAFMPSLENYSKYNQSLFKATSDFILQLIGGTKKIDDLKTFQSDWTNSGGE + KIKTEMQNWYDDFYGKK" + gene 1129898..1131271 + /locus_tag="Ccel_0949" + CDS 1129898..1131271 + /locus_tag="Ccel_0949" + /inference="protein motif:PFAM:PF01266" + /note="PFAM: FAD dependent oxidoreductase; + KEGG: rle:RL3853 putative protein involved in invasion" + /codon_start=1 + /transl_table=11 + /product="FAD dependent oxidoreductase" + /protein_id="ACL75312.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR003042" + /db_xref="InterPro:IPR006076" + /db_xref="InterPro:IPR013027" + /translation="MSKVNYTKELPVYRDIDILVVGAGPAGIGAAICAARNGAKTLVI + DDTGCVGGQATNGLVGPFMTVYDAKSEKQIIKGIFEEIVNRMVEMGGAIQPSEVRSRT + SRAGFYKIGHDHVGPFDHEALKLVASDMIIEAGAELLLHTQFIDVLKEDDKIVGVVIA + NKSGISVIRAKIIIDCSGDADVAARSGVKYELGNVNDGNIQPATMFFRVCNVDSERLK + AHIKEHEEEIRPFYGPFSWLIKEKQEEWGDVPRAEVCLFESPEPGEYRLNVTRILDID + GTNAEDLTKAELIGMKQVHKVFNFMKKYAVGFENAKFMGTAARIGIRETRHIEGLYKL + TADDVLNCRVPENSIAVLATNMDTHNKSDPGGTYYTLEKGPYFGVPYTCLVPKGVSNL + FVAGRSLSADAIAGSATRMIPCCIVFGQAAGTAAAIAVKEGRLPADIDVDELRATLKE + QGAFLGD" + gene 1131299..1132606 + /locus_tag="Ccel_0950" + CDS 1131299..1132606 + /locus_tag="Ccel_0950" + /inference="protein motif:PFAM:PF03486" + /note="PFAM: glucose-inhibited division protein A; HI0933 + family protein; FAD dependent oxidoreductase; + KEGG: tbd:Tbd_1475 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="HI0933 family protein" + /protein_id="ACL75313.1" + /db_xref="InterPro:IPR002218" + /db_xref="InterPro:IPR004792" + /db_xref="InterPro:IPR006076" + /translation="MSFESVSYQKSLEVAAHYDVVVIGSGPAGICAAVSAARMGAKTA + LIERYGTLGGNLTNGAVAPILGSVSRGTLRDELIVRLGVPDSDETGVTQQTHDFEKAK + RVLVDFAHEAGVKIYLQTPVVDTITDGKRLTGIVISQKTGMKVIRAKSFIDASGDGDV + AYFAGAEYEMGREGDSLLQPVTLMFRLQGVEDDALTCIGELDHVTYKGERFLDYTTRL + CNEGHLPPNAASVRSFRTSVPGERVINTTQTNGISALLSDDLEKAEVDLRAQIDAVTD + FLRKYVDGYQNCFVKSTANTLGVRETRRFIGQYMLQDLDLRTGRRFEDVVVHKASFIV + DIHNPAGSAQAEGVPEEVIPYDIPLRSLIPKSLDGLVLAGRCISGTHRAHASYRVMSI + CMAIGEAAGITAVLAAQKDISPREVDFKDVQKVLSERGVELFD" + gene 1132664..1133962 + /locus_tag="Ccel_0951" + CDS 1132664..1133962 + /locus_tag="Ccel_0951" + /inference="similar to AA sequence:KEGG:ABC3582" + /note="KEGG: bcl:ABC3582 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75314.1" + /db_xref="InterPro:IPR003042" + /translation="MFIIEREKRVPVIDSYDVIVCGGGPSGIIAAIAAARNGANTLLI + ERYGFVGGMASSALVTPISIFKKKKKLIIDGIPFELMKRISALNGADISLDSGNVPVD + DEVFKLAAQQLLLESGVTLLYHTYFSDCVMTDGKVSHIIVQNKAGQVAYECKAAIDCT + GDADLVRAAGFETTKETTLQPASLWFQLGGVDTDALKDLFVDAVDEKMPISSEIRGRL + SELNQKGEMPIFGGPWISKHFRDGIVTINLLRESTDASSPEQFTRTECSLRENLFKVI + NIMRENFPAFKNCWLLKSGTQTGVRETYRIVGMYKMTADDVLNPKQFKDTIAKGTHVI + DIHKPDSIEQDCISLKQEYNIPYGVLVPVNSKNLITAGRCVCADNSAFGSIRVMATCM + AMGQAAGTAASIYLQKNCSMDTMDTELLVKKLIEQGAIIC" + gene 1134009..1135088 + /locus_tag="Ccel_0952" + CDS 1134009..1135088 + /locus_tag="Ccel_0952" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: ssp:SSP0524 putative dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL75315.1" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MSIIPKTMKALVAYGKGDYRFETNYPTPQCGADDIIIKTEGCGV + CASDLKCQQGAAMYWGGDNQPAWVEPPFIPGHEFLGRIVEVGENVRDFHVGERVIADQ + IVPCGQCKFCKTGRYWMCQPHAIFGFQKGNNGGMAEYVRFPKACVISKVPEDIPLSAA + LLIEPYGCSKHAVDRAQIRNDDIVVISGAGTLGLGMITYARMQNPKKLIVLDMIDVRL + EKAKEFGADIVWNPSKVNVVEEIMKLTDGYGCDIYIEATGHPSSVIQGLNMIRKLGRF + VEFSVFAEPTTVDWSIIGDRKELDILGSHLSPYCYPFVIENIRNGNLKTNGLVSKTFS + IEDWETAFEYASGKYGDFKVAITFG" + gene 1135106..1136116 + /locus_tag="Ccel_0953" + CDS 1135106..1136116 + /locus_tag="Ccel_0953" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: scl:sce9297 putative zinc-binding dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL75316.1" + /db_xref="InterPro:IPR002328" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MKAFFIEKPNSGIVRDSEIPVPADDEILLEVKAAGVCGTDVHIY + KGEYFGSYPRIPGHEFSGIITDIGKKVTKFKIGQRVAADPNIFCETCDACKENRQNFC + SDMEVVGVTRHGAFAQYLTVPERCVFDVSGLTFTEASMVEPLACVVYGQEKAGIPLGA + SVLIFGAGPIGLMHSQLAAINGAASVTVVDLFEDKLALAKKLGADHTYTSAEFEKLGL + VNSFEVVIDCTGVPKVIEGEIKYVKDSGTILFFGVCPDNSQITINPYEVFKRELKICG + SFALKKTFGKAVAFAKSGKINLIDLVDKKLLLDDAPKLFEDIVAGNSGLKTIFYPNGI + EI" + gene 1136222..1137187 + /locus_tag="Ccel_0954" + CDS 1136222..1137187 + /locus_tag="Ccel_0954" + /inference="protein motif:PFAM:PF00294" + /note="PFAM: PfkB domain protein; + KEGG: tpd:Teth39_0632 ribokinase-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="PfkB domain protein" + /protein_id="ACL75317.1" + /db_xref="InterPro:IPR001805" + /db_xref="InterPro:IPR011611" + /translation="MIDVVALGELLIDFTQIRSNDDSVRRFEQNPGGAPANVLAVLSK + FGVKCAFIGKVGNDVFGEFLRKQLLDLSIDCRNLVSDPNHNTTLAFVTLDDKGDRSFS + FYRNHGADTCLSEEEINLELIKNSKVFHFGTLSMTHEPSLSATLKAVEYAKSCGKVIS + FDPNYRALLWDNVDNAISAMKSGLEYANIAKLSLEEAQMVTGKTLPEDCLRELLKYDL + GIVAITMGPQGCVYATDKYMGSFPEYPANVVDTTGAGDTFWGTLIFGFLNNGADFDGI + SEERLSEIVLMANIAAAMSTEKKGAIPSIPDFARVRAAFEEINGK" + gene 1137381..1138016 + /locus_tag="Ccel_0955" + CDS 1137381..1138016 + /locus_tag="Ccel_0955" + /inference="protein motif:PFAM:PF04647" + /note="PFAM: Accessory gene regulator B; + KEGG: cth:Cthe_2358 accessory gene regulator B" + /codon_start=1 + /transl_table=11 + /product="Accessory gene regulator B" + /protein_id="ACL75318.1" + /db_xref="InterPro:IPR006741" + /translation="MRLINKWSYSCAKGLANVLDENHQKKAEYYFGFQVAIGSIVKTA + LLVAVSMIFGVLIPALIISISFALLRKVAGGYHMDTYGKCLLVSIALFVFAALIAKHT + YRYWSIAWVIILITLTFTIGLYVLIRYAPRDTPNRLITDPQEIRKFKALSIAYICVWL + VLVTVLTILGMKMYTILLCFGVLQELFAITPIGHKFFDRIKYGLAPKQKPC" + gene 1138285..1139094 + /locus_tag="Ccel_0956" + CDS 1138285..1139094 + /locus_tag="Ccel_0956" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ENSAPMG00000003711." + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75319.1" + /translation="MVMNLYILFLVSLPESFLNLIIALLITTRKEDLKVNKRNVIKFS + TTILLMLLSTWIIRPISPNIITSVTLHTIAYSLIFMLVYKMKLIYALFGISFFLLIIT + TTEILYAPYVITYIFKGMANFQNIYHWYVLLAIPQRIFQVIVIVFLWRHEILLATRIN + RRVHRLFLASFLLLLFGEQLLYFVFLTVFEKMQLVCQITFSVSVFVIVSVLNILMFKL + IYTVINGLIVKSYNKYCEFEDDVKFALDEIRSLLANNQVDEAVKLIDYITE" + gene 1139123..1139269 + /locus_tag="Ccel_0957" + CDS 1139123..1139269 + /locus_tag="Ccel_0957" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75320.1" + /translation="MKSKIKFLLAPLSLIITQLALSGVCTACSSTFYQPKAPKHLTAN + RTHS" + gene complement(1139320..1139721) + /locus_tag="Ccel_0958" + CDS complement(1139320..1139721) + /locus_tag="Ccel_0958" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: tpd:Teth39_2244 XRE family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75321.1" + /db_xref="InterPro:IPR001387" + /translation="MHILPERIKSLRNVKRQSQKEVAKALGKSREAISKYELGEREPD + PDVIVQFSKHFNVSSDYMLGITDHIENIPSSERKPYSSELYAFEKYLKNQDFIPYLEL + AVRIKDSNIEINQFEKLLNKLIKQEKKQKHT" + gene 1140743..1140970 + /locus_tag="Ccel_0959" + /pseudo + gene complement(1141195..1141869) + /locus_tag="Ccel_0960" + CDS complement(1141195..1141869) + /locus_tag="Ccel_0960" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: swd:Swoo_2001 methyltransferase type 11" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL75322.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MPKFDLEERIPLDNIFDSHYAAITYDMSLRRTAVKPHKVAANTI + LSNCKEGFQLVEVGACTGLTSLYISANFPQIKITGFEENPFLYDVASSNLNLCCWAGA + KPDIKYKKNSLTQLPLSDDSADIVFSFGTLHLWENPVAVLKECARICKKDGLVIIEDL + NRQINQAFINLLLLYKEVEKSEFLKNLRSTYSKDETLQLLKEAGLDDWIVNTKEINLV + ISSREV" + gene 1142326..1143636 + /locus_tag="Ccel_0961" + CDS 1142326..1143636 + /locus_tag="Ccel_0961" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: mae:Maeo_0046 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75323.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MFIDDVIAKIWEPSYIEYKRIYDKAMNTDTDKLFHTLAGQKMST + IYYPNGLTMSVLATSGCPHRFREDRISGCSMCNYQSYFFNTYASMAALKKKDINLYAK + AVRLSFENARGVMSKPNLFELISASDTLSREELPPQAFEELFGKNDLFSKKPFKYIME + TRAPSVTSESMEMLKKYLGNKSRVLLELGIESSDEWIRNHWINKDITNKDIITAVELI + HQAGFKFSINILFGIPMLTEQQSIEIFKKSVEWADELGADEILCFPLSRKEGTLQGFL + YKELRDSQRLIDAGLVNGEHTGLPWLFSALEAVHQVAVERPSVIKKLNFAQQSSAQSP + VENTSAYNSSIDCYCSRNNIDVLEQFGRDKNIAKLEEALENLQNDPCYKDYVNLIKKQ + KNAGNISDTITILGEEIAKKLWPESCEEKLYGLKKELTLYGTKE" + gene 1144133..1147738 + /locus_tag="Ccel_0962" + CDS 1144133..1147738 + /locus_tag="Ccel_0962" + /inference="similar to AA sequence:KEGG:DSY0670" + /note="KEGG: dsy:DSY0670 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75324.1" + /translation="MVNELSPKSVKSCDDDLYQLHLCKSRDKVILRALKGSTPVKLSL + LASEIILPDKLRGLLKKDKEYTVVNLQWLENLKKYLCALTENSPEGMVKVVISKEIEA + LKRQNVPQSFNVMYSWSEYNKGIGRQLPAEVIYCGKGCFKFKNYYWIINGVDEEDDRW + LRKEYIHGSEIIDFITNILPKWEKQSLPYISKIKYVDESILDVVVKQVCEESIELLIN + WRVNSEELSCIPSLPGYFFADGIIMPGILPKELGIEILKKSGNYILKGDSTAVFMKEI + WPKISQYTKGDVDALLRMHKVVSEHCELVLSIRRLEKNGIGRIIGIPKFVFNNLIVKA + KDILPKLNNKNRFIKIDSNWIPVENIKKVWKLGNNDGEFIEIEFSEVAEKRISPLKGT + WNRVEYPNINLPYGEETRSVIARHIEFLREWGIPGGVVCNLELCSKVFLEAFIHFIRK + NPTARILVIGKKNELDLVYEKGPYVVNAMYEGTKRDPQLRNDMTGLIMATPRAIEEYE + GLAEVEWDIMCILDANNIVKTHHSKLYRILTKYSVGMVIGHFSSSDFLSRQVLYNTIS + DIFKVKNGKTAWKYGLYDSEKIETKNQKVPVVLENSLQEVSVNGIPASKNLPVTPKPE + KREFIRDIQELNICVTSKHTGYIQSDYYEKAYRFLERARSFEHYKADSAKYVPFSCEW + PTYDSMSIHQREWYFWWREQVRMGLYLETDLSYVLVYIYELVNLVGVSDPIDGYEKLY + TIWEIYRNKYLKLDFHLLEWIMDYIIINDCPIDFIEILKDNISRCPYFHLPDFLIPYY + TDEELSKMSTTLIARFIDYPLKKSKFYTGIHQELLDKYIPRAIAEVNFYLKDRFGKGI + FELYKPTKFQKIIRVPFQGAVYGRRGEKELTATVIPYSQHGPLREFLTSVVKHTENKI + RELKKFSGKLQGYTLERDIQRIIDKLIQKTAVSEIMTKAKPKINIDTSKVKQLIKDSD + QVCEKLISGLEEYETVSNKPEEVSDIEEYTIDGVISEDTLTDSGDIYNILMLLTQDEK + NLIKILLQNGFEAEDELIVNQMQGIFIETLIDHINEISLDIIGDMLVSSKDSSKVIEE + DYREELLSLEDYLNVINEENEADGLPDEWKEFKTRLTDYQIQTLKAIVEIEEPMKEIN + KICEENLIMPAMLIDSVNEVAVETIGDIIIDPDRLPPLIIEGTVEILSRLVKIYL" + gene 1147749..1149077 + /locus_tag="Ccel_0963" + CDS 1147749..1149077 + /locus_tag="Ccel_0963" + /inference="similar to AA sequence:KEGG:DSY0671" + /note="KEGG: dsy:DSY0671 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75325.1" + /db_xref="InterPro:IPR002198" + /translation="MEKIKIPKRVTTALLNSLGAGVVPRVGLEHVAVGRKEEINAILV + DLESIAEGGAAFRFIVGRYGSGKSFMLQIIRNYAMERGYVVADADLSPERRLVGVKGQ + GRATYRELMYHLSTKTRPDGGALAAILEKWISGIQAQVVKESGMRPNDSGFYSTVEAK + IMEVISNMEGMVHGFDFATVLTTYWKGHCIGDDAMKDAALRWLRGEFSTKQEAHSFID + VRVIIDDDSWYDYVKLMATFVSSIGYKGLVIFIDEAVNLYKITHSTTRQNNYEKILTM + FNDLMQGKVGNLGIYIGGTPQFMEDQRRGLYSYEALRSRLAESRFVKDGFRDTSGPMI + RLQTLTHEEIFVLLKRLVDIHAAHYGYSPTIGSNELTEFMQEAVSRMGAEELLTPRDI + VRDFISMLNILHQNPDTPFSQVMGSLDFKIEHNNNDENFEEDDEFAEFTL" + gene 1149074..1151299 + /locus_tag="Ccel_0964" + CDS 1149074..1151299 + /locus_tag="Ccel_0964" + /inference="protein motif:PFAM:PF00270" + /note="PFAM: helicase domain protein; DEAD/DEAH box + helicase domain protein; + SMART: DEAD-like helicases; + KEGG: dsy:DSY0672 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DEAD/DEAH box helicase domain protein" + /protein_id="ACL75326.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MTNNDAFYRLAPFIREYIYTHGWTELRDVQLEACKVIFDTDDHL + LLAAGTASGKTEAAFLPVLTQLHEKPSSTIGVLYIGPLKALINDQFLRLDDLLKEVDI + PVWHWHGDVSQSHKNRFMKDPRGILQITPESLESMIINRDNEISRIFGDLRFIIIDEV + HVFMESDRGRQVLCLLERLSRYFEKEPRRIGLSATLGDYSLAEKWLGSGTKRRVATPK + TETSQQKIRLAVEHFYISDPIDSKSKLTISSKDEVKEQNLTTDKYYEYIHSKCKAQKC + LIFANNRTEAEQVITNLRQIAKAKSLPDIYHVHHGSISASLREAAEQAMRAQDHPAVT + AATVTLELGIDIGHLERVIQLGAPFSVSSFLQRLGRSGRRGSPPEMWFACYEEASMDK + GALPAQIPWQLIQTIAIIQLYLEERWIEPIEQKKCPFSLMYHQIMSILITKGELSPAA + LAQKVLTLSPFKEVSQEDFKELLRHLIKIDHIQLTERKGLIVGLAGEQLVRSFRFYAV + FAENVEYTVKDDTSEIGSIINPPPPGERFALAGNTWVVVEIDPKNKIVYSKKVNGRVR + TYWSGGGGGIHIKLLQRMRKVLFEEKVYPYLKEKAKERLQIARDFARRTELDKKSIFY + AGNNEYYIFPWMGTNEFRTLDRWLRVQCSDVAKIRNIGGLPPYYLTIQSDVSNSEELL + QVITNMAEREISPYDLVGEEDAPQLQKYDEFIPHNLLRKAFVTDYLDIRAMKGLIGDW + K" + gene 1151326..1155846 + /locus_tag="Ccel_0965" + CDS 1151326..1155846 + /locus_tag="Ccel_0965" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: non-ribosomal peptide synthase; amino acid + adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; + KEGG: bwe:BcerKBAB4_1782 amino acid adenylation + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75327.1" + /db_xref="InterPro:IPR000169" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010060" + /db_xref="InterPro:IPR010071" + /translation="MRKGLHKVCERIYYSLTHPQKRIWYIENIYPEIPIHNIGGAVTI + NSHIDFDALEEAINIFISKHDGLRIRIVDKNGDPQQYVSEFKRTKLDYYDLSSYHEGA + KAEYYRIADTEMKKPFKLLDNPLFFFALFKLDNNVSGYFIKLHHIISDGWSIELLTRQ + IMEIYTELIEGREIKQEKEQSYIDYIKQEKVYLGSEKFIKNKNFWNNKFAELPEEFSI + KSSNDTAGERQIFYIGKKKTELLKEFCAQNKCSLYTFFTSLLLIYLSKITLQEDIIIG + TPVLNRSGKKEKSIFGMFTSTMPLRANVNQESTAAEFIRGINSELMDCFFNQKYPYDL + LVKDLELKKKGLDSLFQVSINYYNTKMESRLYDASIENMEFYSGHQSYPLQLIIKDWL + EDSNLSLSFDYKLSEYTTEQIKYMYYRLDALLDQIVSNPSKKIFNLHLVNDSEWNWLV + YGFNSVKGEYPSQRTIYELFEEQAERTPNKTAVIFDSIELTYKELNERSNSLARYLRE + LGVGRDRIVGLMSTHSHYMVIGILAIIKAGGAYLPIDSTYPAERIEFIVKDSGTSILL + TDNTIPKETNYNGHIINLKDENLYKGQVCNLEKINKTTDLVYVIYTSGSTGAPKGVMV + EHRGLVNYIWWAKKMYVRNEKEVFPLYTSLSFDLTVTSIFTPLISGNTIVVYYDDGTE + FILLRILRENKVSIIKLTPVHLSIIKDMNNDNSSVKRFIVGGEDLKVALAHSIYKSFG + GDIEIFNEYGPTETVVGCMIHKYDVKNDLGVSVPIGIPADNIQIYILDKNLNPVPVET + IGELYVSGAGVTRGYLNREELTKERFVDNPFIKGSKMYKTGDLAKHLHGGEIVYMGRS + DYQVKLRGYRIELGEIENYLFSHNSITDAIVIDRNDEKGNKYLCAYIVSTTDLDISEI + RMFLSSKLPDYMLPSHFVILQSLPLTSNGKVDRKLLPEPKLEEESKAYYCEFENDTEE + KIIKVICEVLGIDKISPTDNFYQLGGDSIKAIQIASRLKSEAINLKVKDILLNTIIGE + FVERAKKQILPHKAAQGPCEGSILPTPITQWFFRQKFNNENHYNQSVLLDLKQNISLE + VIETALGVLVKQHDSLRINYDRNTDGLYYNNKYTERNFEIKVCDLSSVSQEKVRHEIK + VLGEGLKSGMDIEKDILFKAYFYKNEEKGNKLLLTAHHLVIDAVSWRILLDDFSAILK + SISMSETIKLPPKSDSMQKWAETLKIFGEREVNTDELKYWENTIENDFVFPVDFQLGE + DILENCDTITGNLSEEDSDKLTLEANRAYNTVTNELLFIALSQVLSNLTQRNRVLIEL + EGHGRENISDIVDISRTVGWFTSIYPVSVRMDSDDLGTQIRQVKEQLREVPRKGIGFG + ILSGLSQSINEDGRKHIRFNFLGELDTTFNNDYFELSEEDSGSEVCKKNRMTCLIDIN + AMIIKKRLSVAVTYSRNSFKKETIERLLDNFLEQIRKLILHCCNQLQPDYTPSDFELI + NISQDQLDDLFD" + gene complement(1155938..1156870) + /locus_tag="Ccel_0966" + CDS complement(1155938..1156870) + /locus_tag="Ccel_0966" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: pfu:PF1011 daunorubicin resistance ATP-binding + protein DrrA" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75328.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MYVLEIKNLFKKVSDEFSLKDINLTIENGDFVSLIGKNGAGKTT + LLRILSGLIKYDKGKVFIDGIPVEKSNKVNKVIGIVQQYKGMPDTLTVQEYIKFQARL + KNADSKLLNDLIEISGLSKFSNQYLSTLSGGNLRKMHIMFSIMHKPKLVIMDEPTVGL + DPVVRKEMWDYIYGLREIGISAIISTHYLDEAEQLGNKIAIIDNGNLLTSGTKEQVKE + LYTSEDGLDILTVDDENALEILKYIIELNLNFITKSEVMGNRVRVYTDSLDFSYLPTL + VNLLSEHNFKIKTIKFLEPSIEELLMKISSFKTA" + gene complement(1156889..1157665) + /locus_tag="Ccel_0967" + CDS complement(1156889..1157665) + /locus_tag="Ccel_0967" + /inference="protein motif:PFAM:PF01061" + /note="PFAM: ABC-2 type transporter; + KEGG: swd:Swoo_2004 ABC-2 type transporter" + /codon_start=1 + /transl_table=11 + /product="ABC-2 type transporter" + /protein_id="ACL75329.1" + /db_xref="InterPro:IPR000412" + /db_xref="InterPro:IPR013525" + /db_xref="InterPro:IPR013526" + /translation="MENKVRLWFRAVLDFVIMDLLQFLRSPAGLITTLLTPITMIASF + GLGTSVPASSSISPVTSGSYFQFVAPGIMFVGIMFSSTFTMGYGILVDKRKRIAEDVI + TSSIPYSAFVSGRFFSMLIKSILQMLIIVITAILFFDLNVKYPGMLLLAITCTTFFFA + GFGVLLAAGTDEIAFSGLSNMLLVPLFYFSGVFFPIENFGGLGKVLQFLPSSIQVKLF + RYSILGDLPNNILLPIILALVFTLIMVILPSLVFKSAIKK" + gene 1158180..1160072 + /locus_tag="Ccel_0968" + CDS 1158180..1160072 + /locus_tag="Ccel_0968" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: sus:Acid_0877 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75330.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKETALVYMPWATTTMPSLALGLLKSVLEREDIPTDVYYLNVRF + TKYMDKVMYEEISEICDAFTFAVEWMFAQYLFSEEKMREGKVSYSNLILPILKSDPIL + YMYLRTRKEIIEPLINNIIPKFIEDCLNDIEWGNYKVVGFKCMIGYQVSSLLLSKKIK + ERYPDIKIVFGGPNVREVMGEEILKCFEWVDYVIDGEGEESLPALVKNIAKDILYEDI + PGIVYMKDGECIRSKQSAKMAELDELPIPDYSDYYIEFQNNDLKEFLPSINSIFEGSR + GCWWGEKCQCTFCGQCNGYLKFRSKSTDRVLNEVLDLIEKYDNKNFWATDCILSLDYF + DTLIPELIKRKLDLNVFFEVKPTLTREQISMLYAAGIRKLQAGIENINTRLLKLMHKG + VSAIQNIQFLKLCTEQGISVFWIMLYRIPGEEKQCYDEVINLIPSISHLEPPAPGRLF + PINLDRFSPYFNDPEKYGIKDIKPKAMFNLIYPDPKINLNNISYEFDFTFNKSEETVK + LYINNLNTAVTKWQKAYENKKYYCWYRVENDAVEIEDNRPIVAGQESDIHRKYTLKGL + EMQVFLLCNDICSLEDIYREVNKNREKEIGKDKLQEIIGWLKDNKLLLEETGRYTNMA + LLKISK" + gene 1160146..1161174 + /locus_tag="Ccel_0969" + CDS 1160146..1161174 + /locus_tag="Ccel_0969" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + polysaccharide biosynthesis protein CapD; Male sterility + domain; + KEGG: dol:Dole_0520 NAD-dependent epimerase/dehydratase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL75331.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR013120" + /translation="MKVLVTGGCGFLGSNVCEYYINKGAKVISYDNMTKHELLKTGFA + VDKARNYNYEYQQKLGVKTVIGDVRNLEELLDNAQGCDYIIHTAAQPAMTISWEDPAL + DFTTNALGTFNVLEAARRLKIPVACCATVHVYGNEINLSLKEGEKRYLREPEAIDETY + PTLEGVITPLHASKASGDIYVKAYIDTYGLEAASFRLTGIYGEKQFGGEDHGWVANFA + IRTVLGWPITIFGAGKQVRDILYVSDVCAAFDAFYKTRSSGIYNIGGGTQTAISLLDC + IDILEDINGKRPEVNFAPDRHGDLRYFICDISKANKELGWKPAVMPHEGIRNLMNWIK + ENKSVFQS" + gene 1161212..1161946 + /locus_tag="Ccel_0970" + CDS 1161212..1161946 + /locus_tag="Ccel_0970" + /inference="protein motif:PFAM:PF00483" + /note="PFAM: Nucleotidyl transferase; + KEGG: dol:Dole_0521 nucleotidyl transferase" + /codon_start=1 + /transl_table=11 + /product="Nucleotidyl transferase" + /protein_id="ACL75332.1" + /db_xref="InterPro:IPR005835" + /translation="MKALVLAGGRGKRLDQLSADKNKCMVKVGDYPVIEYSLNCAASI + DINEIIIVVGYRAEDIINRYGNSFKGKKVSYVIQWEQKGLVNAIECARTAIGKDDFIL + FLGDEVLLNPRHSKMIEEFEKGNAFVICGIVEVDDPSLIQKTYAVLQNENNEVFRLIE + KPRKALNNFMGTGDCIFKNDIFKYIDVTPIHYQRNEKELPDLIQCAIDDGKKVNSFII + CSGYANINLQEDIAVAENFYVKEYQT" + gene 1161983..1162912 + /locus_tag="Ccel_0971" + CDS 1161983..1162912 + /locus_tag="Ccel_0971" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + short-chain dehydrogenase/reductase SDR; 3-beta + hydroxysteroid dehydrogenase/isomerase; polysaccharide + biosynthesis protein CapD; dTDP-4-dehydrorhamnose + reductase; Male sterility domain; + KEGG: mja:MJ0211 UDP-glucose 4-epimerase (GalE)" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL75333.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR005913" + /db_xref="InterPro:IPR008089" + /db_xref="InterPro:IPR013120" + /translation="MRFLITGGAGFVGCHIAKQLLDENKGEVIIYDNLSSGKLQNIPT + GCRFIEGDIRDSKKIEEVLEGVDVVFHNAAFVSIRNSYTMLKEEMDINCYGTQNILEG + MVKQRVRKIVFASSMAAYGWPRQIPITEDCDLAPISPYGFSKARCELYCKIFAKRFGI + SYVILRYCNIYGIKQTLSPYVGVLTTFINQALSSQPITVNGDGEQIKDFVNVEDIAHA + NLLAMEYEKNDIFNIGSGIKTSVNQLADMVLSNFKDGKKIYMPLPEGEVDSICADISK + AQNLLGYKAEGDLEKLLPQIIEWWKNNCYEKIS" + gene 1163023..1164276 + /locus_tag="Ccel_0972" + CDS 1163023..1164276 + /locus_tag="Ccel_0972" + /inference="protein motif:TFAM:TIGR01426" + /note="TIGRFAM: glycosyltransferase, MGT family; + PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; + Glycosyltransferase 28 domain; + KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase, MGT family" + /protein_id="ACL75334.1" + /db_xref="InterPro:IPR002213" + /db_xref="InterPro:IPR006326" + /db_xref="InterPro:IPR007235" + /translation="MSKVIFLGYLFQGHINPTLGLVNELVNRGEEVIYYSGKEFCKKI + EATGAKFRDYGFIQDPSESNKTQKVQGNLDAFAQVVTWVLNVGKQIISNISSEIEADR + PDYIIHDSQAFWGKRIAGSLGIPAVSSIASFALTGKMLDIDPDFFIENMLRMPNASLF + AKKKSNIVRLLDLLSRRISAAYDEPDFNIYDFANNTGKLNIVYTSEYFQPYGEVFDDS + FKFVGHSIFKRTENVDFPFDKLGSLPLIYIALGTVRTNRLDFYRECFSAFGDMEIQVV + LSVGTNVDVYQLGKIPDNFIVRNYVPQLEILKYASVFITHGGTNSVNEGLYNNVPLIV + YPQGDDNHIVAGRVENLGAGIYLKNDDINAEELKNAISRVLSDENFKINSKAIGDTLK + TAGGYLRAVDEIFKFKGELDYENMV" + gene 1164260..1165804 + /locus_tag="Ccel_0973" + CDS 1164260..1165804 + /locus_tag="Ccel_0973" + /inference="protein motif:PFAM:PF00144" + /note="PFAM: beta-lactamase; + KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase" + /protein_id="ACL75335.1" + /db_xref="InterPro:IPR001466" + /translation="MKIWCKSAGLCLIITFILCMFLQSFSVVKADNTGFKLSNDKIGK + IDELIQKQMDKSKIQGLSLVIVSGDKAVYKKCYGYAEIETKKPVTEDTLFELGSTSKA + FTALGIYKLEDKGLINLDDSVSKYIPWLKLNYKGKSADLTLNHFLHHTSGVSFLTLED + IKPSTAENALEQTVRTLQEIELDTPPGKQFQYATINYDVLGLVIEKVTGKSFEDYMQD + EVLLPCGLNNTFTTRNQAVESRMAAGYKVSLMRPVKYNAPVFLGNIPAGYFITNINDV + QRWLSLHLGSIKLPSIDYKLMEKSHEIDTSVEPHDIGVLYDKGERYGAGWERAEGRNG + FFHGGANPNYSSYMFIRPDQGMGIGMLCNFGSDTIQILGKNLVDIIDGNGEPSLYMDV + AVIGDKNGTILTIILAIVDILIIISMITKIRRYRLKISKSPVKKPIGLIIASLLLIIL + GYMLYILPRVICGGFSWNFVLVCGGLGLPLGTLSIFLTGLLTYINYCIKLFYPGKRIH + TSYIQK" + gene 1165829..1172257 + /locus_tag="Ccel_0974" + CDS 1165829..1172257 + /locus_tag="Ccel_0974" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + condensation domain protein; cobalamin B12-binding domain + protein; phosphopantetheine-binding; Radical SAM domain + protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: bwe:BcerKBAB4_1784 amino acid adenylation + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL75336.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006158" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MGNSNKISRQNVEDMLPLTPIQEGMLFYYLTEQNNGLYFEQISL + RLTGDIDIQKVYEAWRFVISSNEMLRTVYRWKNLDKPMQIVQKNCEIPIREYDFSINN + DEDKEKLVEDLKQKDLKEKIDISSEPFRISLYKLSKNEYEMIISSYHIVYDGWSNGII + LKEFMEAYKAYYSGSQPVKTVKNKYKEFIKWSLKQDTNKQEEYWKEYLRDFVTKTPLP + ADNKKSGNPDMAKNFITILPDELGERIRSYARERNITLATLLYCAWGILLQKYADTRD + VVFGTTVSGRTPEIEGVDEIVGLFINTLPLRVKVNEGERVSDLLNRLDNDLKHRAEFE + HTPLTTVNSCSAVESKEGLFDSIVVIENYPLEKGLTDNGDGLEIKLSSIFEMTNYDIT + VVISTFEEIGLRFIYDDRLFKEDKIESITNHFKNILSNIVENEDITVLAINMLSEEEL + KHILFDFNNKGLEYPINKTIHQLFEEQAEKTPDRIAAVLEDKSITYRNLNERANQLGA + SLSKKGLGVGDVVGVMLERSIDMLISLLAILKTGSAYLPIDTGTPAERVLYMLRDSGA + KMVITSSTAMKDITFTSMQGFEANEDIQIVLTGARGHIKEFDALPIPDRSLIDLTKYK + GKIGMASINNCISVQTTRGCPYMCLYCHKIWSKHHVRRSAQNIYDEIEYYYKNGITNF + AVIDDCFNLDMQNSSEVFKLIIKNKIKIQIFFPNGLRGDILTPDYIDLMVEAGTRGIN + LSLETASPRLQKLLMKNLDLNKFKQVVNYIAQKHPEVILEMATMHGFPTETEEEAMMT + LNFIKDIKWLHFPYIHILKIFPNTEMEEFALANGISKEDIVKSKDRAFHELPETLPFP + KSFTRKYQASFMNDYFLSKERLKKVLPVQLMVLDEEALVQKYNAYLPAEIKNVSDIVK + FAKLDDFEIPERGVEKNQEGCTLFDIPPAVRQRKPKAMKILFLDLSQHFSSHSMLYKV + AEQPIGHIYLLTYLKQQFGEKIDGRIYKSGNDFDSYKELKELVEDFQPDLIGIRTLTY + FREFFHETVSLLRQWGIDAPVIAGGPYASSDYDTILKDENISLTIQGEGEYTLEEIVS + KMLVNNFKLPSAEELRSIKGIAFAEHQQNYQNKSREVILLDEMGDSLDSENTCNLNIG + RNSIVSSTYENSLAYVMYTSGSTGKPKGVMIGHRQVNNCIFWMQDEFKLSQDAVIVQR + TNLTFDPSVWEIFWPLYIGAKVKLITAEQAKDAGYLLDLMAKDNEITMMYCPASLVTG + MTYMLNARDNKPRLRLPWLLIGAEPIGVETVKDFYRCFEGNIVNTYGPTECTINNTYY + HIHRDDELKIVPIGRPVANNKIYILSKDLQAVPINVTGEIFIAGDSVGIGYINNPEKT + MQYFIENPFEVGKLYKTGDVGRWLENGCIEILGRVDEQVKIRGYRIEPGDIQAAMLEY + NDVKESVVIVRDSKKKKTETKVCKLCGLTDEYPGVNISDDGVCDICQNISVYKGYADK + YFKGLEQLDKLIKEKNKDKQSKYDCLLLYSGGRGAANALYHLVDMGYNVLTITYDNGY + FTKSDIENIKRITTKLGIDNIVLTHKNTDKILKESCKHASTVCRGCFHISSSLAAEYA + YKNNIKVVVGATLSRGQILDNKLYMFYRQGISDVEQLEKELLNVQKSARDMDKDIFDH + MEIDVIEEGTVYDTVKFVDFYRFCDMTNQEIIDYLSNRDEYWKTRKDYAIYSTNCPIK + QVGDRLHLIEKGYHYYGAATSWEKRIGHISLDNLKQDLNCNVSEKGCKNFLDKIQYEI + KNSNDKLDSKYICAYYTADKDIEMGKLKEHLEKFLPSYMLPSYFVQVDSIPLTSNGKL + DKDALPVPNVTISSGVDYVAPENEVEEKLAEVWQKVLGMDKIGTNDNFFEIGGNSILL + IQLQTQIERIYPGKVSITDLFAYTTVSKLAELIETCKGSNVKNIQLEQIFLPDDFFIE + AGGKEGAVFKFNIMGEILEKLKQLSKDNNIGLYEVMLSVYIYVLSEISGLKKVTIQTD + FGSGSGLYQLEADLSQITGFEDLFKLINTKKKTLHKDEAYQPDEIKAQSIPREKNSVI + PLIYSEKSLIEGIKSSELFDIAFGIDESDNDVTIACEYRRGKFRKDKIKELVNRYAQL + LDVIADSCKV" + gene 1172285..1173574 + /locus_tag="Ccel_0975" + CDS 1172285..1173574 + /locus_tag="Ccel_0975" + /inference="protein motif:PFAM:PF00698" + /note="PFAM: Acyl transferase; + KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="Acyl transferase" + /protein_id="ACL75337.1" + /db_xref="InterPro:IPR014043" + /translation="MERVALLFPGQGSQYAGMGKSLYDEFKAARLTFEEANDVLKFDI + KRLCFDGLLSDLSKPENIQLTLLTVSVATFRAYMEQVGMNPVIAAGHSLGEYSALTCS + GAVSFPDMLKIVNVRSKLSQELADSGLGGMTIIDGLDPDVVEECCSLVSRQGHIVTVS + CYNSATQTAISGHQNAVMEAEDKLIELGAQITPIIGSAPFHSAVMETAGERLKEELGK + YTFRSFNFPVISNFTALPYEKPNRLPELLQHQMSHPVQWQRIMNYLKYKGIKITIEIG + PQNVLRNLVKSSINGIEAFSFGQQEDRDRIIKDERFSKRKESIGEQGSEFISMCLAMA + VSTKNRNDNVTEYNKGVIEPYERIAGLQQRFKKDGTQPKIEQMYQAVEMLQTVLLTKK + IDLSMQKMIFNNIFDQTGTHNLFRDLICFQPNESQEG" + gene 1173577..1177395 + /locus_tag="Ccel_0976" + CDS 1173577..1177395 + /locus_tag="Ccel_0976" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: ckl:CKL_2355 hybrid nonribosomal peptide + synthetase/polyketide synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75338.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MLDFNSVKKTKSNKKRIIEIEEISGEDIAVIGMYARLPQADDIE + GFWDNLKNGRDCITKFPASRRRDTESYLHYKGSTKRNRYSTGAYLEDIDKFDNSFFNI + TPKEASLMSPNQRIFLEATWKAIEDAGYGGKKLVGSKTGVYIGFEADAPFDYTRYIEA + FDPKSVSVAVTGNLTSVIPSRISYLLDLKGPSISIDTACSSALVAVHMACKGIKNKDC + EMAIVGSIRLNFMPMEGQLNFGINASDGRAKTFDDSSDGTGSGEGVITYLLKPLSRAL + KDKDNIHAVIKGSAINQDGRSIGLSAPNVLAQEDVIVSAWKDAGIDPETVSYIEAHGT + GTKLGDPIEVDGISRAFRRYTSKKQFCSIGSVKTNIGHLDNAAGVAGMLKAVLSLKNK + QLPASLHYKVPNRRINFKDSPVYVNDKLTPWETHGFPRRCGVSSFGFSGTNCHIILEE + APSVVNKSIDRPCLEVLTLSAKTNDALKELVKRYRLYIQKNEDVDIGNMCYTQNTGRW + HFDYRIAVIARNTIELKNKLDKLVSIDFEDINEKEIYFGIQLDNIKQKGQNGLFESKI + KELSCEADKKLEEFILSEKTEEDVLYDICKRYVEGANIDWDILYKGEDRTRISLPTYP + FRRTRCWINAEEGLENDLFYVTAWESKILKKSSTIKGSVLLFRDSIGKAEKLVAILRG + MQVNVIEVDIGSKYKKINNSRYQISASAKAIQSLLNDIDIKDLRYVIHMASISESSTE + DISILKQKLQNGIYSLYHLLQGTAKLGLKDRLNIVVVSEYVNKICGEENTLKPENAAM + FGMGKSAFWEYPNISIRCIDIDRDTDISVIVPEISAEGVEFCTGYRNGNRYVEIIKQA + SIENKLLDIKEEGVYVITGGAGGLGIEFAKRLVLRNRRAKLAFINRSKLPERNDWDAI + LASGSDEKMCRLLNNIKDMEARGAEITLLSADVSEFEGMKVVISELKRRYGNINGIIH + SAGISKRDETEEDLRAVLSPKIEGAWILDRLTQEENLDFFVMCSSAITLIGGLGGGGY + TAANAYLDSFSAQRSSQGKRTLAINWAAWENTGLAEGMTINEDKELFRVLLPENALDA + FENALNSNLDRVIIGELNLSSTILNLGEYLPFRLSDNLKKNTIEKTVQEEEQLKDIKL + KGKEEQDYTKTEVLIAKIWGEVLGFEEFNVNDNFFTLGGDSIMITRVETLLEKHYPGR + ITISELFAYPTISKLSQYLSSSQISGKEADTGETELRDSIFKLFEDIRAGSRNISSAI + KYYDSLEVRR" + gene 1177392..1188611 + /locus_tag="Ccel_0977" + CDS 1177392..1188611 + /locus_tag="Ccel_0977" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; aminotransferase class-III; + phosphopantetheine-binding; Non-ribosomal peptide + synthetase; Beta-ketoacyl synthase; + KEGG: cyt:cce_3073 peptide synthetase" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75339.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR005814" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR013624" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MSEVTRLVFENVISGKIEEGVGVELLESLKINGNKKYKDVAIIG + ISAKLPNANDIDEYWSNLEKGVDCIRPFPPSRRKDVEGFILHYTSAKKGEIKYSHGGF + LDEVDKFDYKFFRLLPKEANTMDPNQRLFLQTAWEAIEDGGYGGGKLTGSKTGVYLGY + DNWPIYGQYISKTSPSQVMTSVAGNVTSVIASRISYLLDLKGPAVIMDTACSSSLVAL + HIACQALRQNECEQAIVGGVKLNLLPAEGILEIGQESKNHRIKTFDEDSDGFVWGEGV + AAILLKPLDKALRDRDNIYAVIKGSAINQDGNSVGIAAPNVLAQEEVILNAWKDANID + PETISCIEAHGTGTRIGDPIEIDAIQRAFKRYTEKKQFCAVGSVKTAIGHLDNVSGMA + ALIKMILAMKNKKIPAHLNFKSPNHNIHFHKSSVYVNSQLSNWETDGPMRCGINSFGI + SGTNCHVILEEAPSYERQEPIDKKLKVLAISAKSSEALQELVVRYEDFLNKGYDINFD + DLCYTANTGRGHYNYRLALIFYDEADLKKKLRSINVNSLKKLNQKGIHFNIHKVINES + TEPKKGELTTKELREITKEADLVLRNFIEKEEQSEDILNELCTLYVRGAEIKWEDLYK + DENLRRMRLPVYPFEKKRCWIDTTLKTDEANISVNNQKSETISVAQEQIIDKTEVHMQ + FNRKDGIIKKLKNIIKNSSGMELSEIDITANFFEMGFDSVLLIQVRQGIKDNFLIDVT + MRQFLGELSSLDSLANYIEQNLPNEVIIEPINNSDICNPQEKVTKPEPEIAQNIAPDN + EIKQIVDQQLKIMLQQLELLKGGNSPATTQSKVGVAEVVQRTENLTAEKTPNLSQNTN + REVFVPYKKLEINTRDFFSQKQSEHIKTLMDNYCKRTAQSKKLTQESRYRLANNRNVA + GFRPDIKEMVYQIIAERASGSKIWDVDGREYIDISMGFGVYLFGHNSKFITDSVEEEL + KKGTPLGPMSRLAGEVAALVCEITGMDRAAFYNSGTEAVMVALRIARAVTGKKKIVIF + AGSYHGTFDGVLARAHTASQEPKAVPIAPGIPQNMVEDVMILDYNDKQSLEIIRRHSH + ELAAVLVEPVQSRRPDIQPKEFLQQLRKLTCEMGVALIFDEIISGFRIQPGGAQAWFG + IEADLATYGKVAGGGMPIGIVAGRSEYMDAIDGGMWRYGDDSYPGYDDKRTFVAGTFC + HHPLAMSAAKASLNYIKEQGEELQNKLNERTAYLVKKLNKYFEDNELPIYMVNYGSLF + RFVLKGDIELLFYHLIKRGIYVWEGRNCFLSTAHTDQDIEYIISATIDSIEEMKADEF + LTNSPAKNGSGTSLNNISMPLAISNEFKNNIPCKEENIEKIPLTQEQTQLWFLVQSDI + DGQVAYNENSIIKLRGDLNFDIMYDAFKQVIKRHEALRTTIEVEGNNQIIHPDISLDM + PLIDFSNLNSIDRYEKIGEWLIEEGKKPFDLTKGPLFRINILKEGQQEHTLFFAIHHI + IADGWSTGILVNELGELYTSGVRRRDSKLPKPVQFKEYISWQESQKTSASWASARAFW + REQFAKAIPMTELPCDYPRPSGRTYRGARYHFSLENSLYTALKTISAKEHGTLYMTML + AGFNLLLHRLSGTEQVVVGIPSAGQSMMGSGRLIGQCVKMLPVNSCINNSITFSEYLG + NIKELLMQSFEYQNYSFSDLDDDHEAVHIPQITVMFNMDRPLDAPGFYGLEAEILPYP + ISFVQYDLGINVVEIEKQLQIDFDYNTDLFDAKTVELWAEYFKALLLEISKKPNDLIC + TFSLNNQERINNTVKYEKCSELIHIMFEKIAENNPAAIALDFGTKKVTYSELYLRATQ + IASLITKEGIGRLTAIYVNDITNMTASILASMKSGNPYILLDKNFIDYKLDDIELMIT + DSEITTGKAVEIRIGKELSNVESIHELNADIKPDDLMCLAHIQHEKGETEKLGISYKH + AAIRCSEMKDRLGLQSGERVACFISPIHNAGLEALLPALTAGCCVSIYDTTEIRNMDF + NVAIMSFVQWKHLTMESGWEHVESLRIISVSGSQMLNGHVEAWRKTALASTGVIYAYK + PERLPFTISTLDISTIELEAPIKKLPLGCIVGGYAYIMDSFMQLTPECIPGCIYVSGF + IPFEGNDRCIPDIFSNIRGDNLYNTCENARRLRNGEIELLGNKENTTKIRNYFVDLKY + IEAVLYMHPAVSQAYLISKEDGRITAYIAAKGTGISSRELTRYLKHLLPDYVTGITFI + TMEELPVNPDGCLNISALPTLNEQHREGSDTPRTPLEKEVYAIWSEVLGFSDIGINDD + FFEIGGYSLLAIRLVSRMNEVFKVNLGLKTIIDLPTIAGIANEVEKKRVLQDGKEYTG + STQPQLIPDVEHWNEPFPLTDVQQAYWVGRSDAFELGNIATHTYFEVESMELDIKRFN + EAWQMLIQRHGMLRTIILPSGEQLTLKEVPPYEIKVLDLCGKETEEAEKELLNIRERM + SHQVMQTDKWPLFEISIARIDENRIRIFFSIDALIMDTWSFQILLDEFSMLYQDNTKC + FTPLEITFRDYVMTERKLEDSPLFKQSLDYWMERLVSLAPAPDLTLARAPSSLVNPKF + IRLSEKLKPNTWDKLKARATTAGLTPSGILLAAYAEILSIWSKNPRFTINLTLFNPLF + SHPQVENIIGDFTSLTLLEVDNGSADIFSDRAVRLQRQLWEDLDHRFVSGVRVMRELG + RLKGDMTGMLMPVVFTSALINNNATTNKSPMDWMGKLVYSIGQTPQVWLDHEVFEEEG + SLVLNWDSVEGLFPDGMLGDMFDAYCLLLNLLADNEDVWGKNRSALINILLPAKQLEE + ISSDNTTEQKITGTLLHKMFEEKVLENPAALAVVSNGKRLTYGELYTLSNKIGNRLRK + EGVCCGELVAVIMEKGWEQVAAVIGILASGAAYLPISSELPKERIEYMLHNGKVKLAL + TQQRIENRITLPEGVKYISLQGVEIESSSGEPLEAVQTQNDLAYVIYTSGSTGNPKGV + MINHIGAVNTIIDINKRFGVTDFDKVFALSSLSFDLSVYDVFGMLAAGGAIVIPEASK + TKDPAYWIELMIQEKVTMWNSVPALMEMLVEYTDGRNENLPNTLRLVMMSGDWIPVSL + PDRLRKTVPGVQIISLGGATEASIWSVLYPVEKVEPSWKSIPYGKAMLNQKIYVLNSI + LEICPTWVPGQLYIGGIGLAMGYWRDEAKTKTSFIIHPRTGERLYRTGDMGRYLPDGN + IEFLGREDQQVKIQGYRIELGEIEHAIMQHPKVSTAVVSVLDRRENARLAAYVVPKSE + SEAGETMPSSQGKILTDPLDRLQYKLAQPGARQYRNESFIQLRKPEINEEYINKNFVE + RRSYRKFLKQNIEFEQLSKLLSNLMQVKIADIVWPKYRYGSAGGVYPIQTYIYIKEGS + VANIPQGAYYYRPAEHRLELITNKQIEAEDLEIDKVLFNNSAFTIFLVSNINAIEPMY + SEDSLRFSSIEAGLMSQLLEMSAPECYLGLCQAGNFDLSGVKNILGLEDGYIPLNCIF + GGCVDESSLKVEALIEEYREYEPLIKLIDEGNVQAHTADISNQGNYDITSELKEFLKE + KLPEYMVPTQIIILDALPLTANGKVDRKSLPQPTEILKEEKSEYIPPNSQLEKVLADS + IKEVLQIDRIGVHDNFFDLGANSVDIIRLHNKLTGFINKKIPIVEMFKSPNVFALAQY + IGNQDDGQLPENEIDSRENKVNEGKARLKKLLQKKEVKVDE" + gene 1188604..1193565 + /locus_tag="Ccel_0978" + CDS 1188604..1193565 + /locus_tag="Ccel_0978" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; KR + domain protein; Beta-ketoacyl synthase; Acyl transferase; + KEGG: amr:AM1_A0228 beta-ketoacyl synthase, putative" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL75340.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /db_xref="InterPro:IPR014043" + /translation="MSNPESKDSYTGLETAIVGIAGRFPGAKNIEEFWENLRDGKESI + RTFTDDELIESGIDPILLKNPNYIRSGTILEGADMFDAEFFGYNPRELEIMDPQQRVF + LECAWEAMENSGYNSKTLDGSIGVFAGTNMNTYILSILSAKGNARRMIDPVQAEIGND + KDYIATRVSYKLNLDGPSVVVQSACSSALVAVHTACRALLGGECDMALAGGVGVRVPL + KSGYVYQKGGLFSHDGHCRAFDAKASGTVFGSGVGIVVLKRLSDAINDRDNIYAVIKG + SAVNNDGSSKVGYTAPSVDGQTKVIKTAQLVSEVEARSISYIEAHGTGTNLGDPIELS + ALTNAFRTSTKDKGFCAIGSVKSNIGHLAAASGAASLIKTALALKNKKLPPSINFEKP + NPNIDFESTPFYVNNKLSEWESSEMPRRAGVSSFGVGGTNAHIILEEAPDSYHGSAPR + KHNLLVFSAKTETALQTMVKNFVLYLKKNPTLNISDAAYTLQTGREEFKYRRAVVCSD + INDALEKLDSPDPKSESNLKEDDKPAIVFMFTGQGSQYVNMAAELYTSEPIFKEQVDK + CLNILKPYLGLDLKDILYPDGNTTEATEKLKQTFITQPALFVIEYAMAKLWMEWGVKP + KAMIGHSIGEYVAACIAEVLTLEDALKLVAARGRLMQSLPAGAMLSVSMSEEEVKPFL + NEGVSVATINAPGFCVVSGNFEAIKQLEEKLSENGKHCRRLQTSHAFHSVMMEPILEQ + YEALVREIKLSEPKIPYISNVTGTWITASDATRPDYWSKHLRQPVRFSDGVQELLKSS + EYAFLEMGPGKTLCTLLGQHKEAVGRTILSSIPQPHEDINSFEFLTNTLGKEWLAGVD + INWRKIYSKEKRYRVSLPSYPFEKQRYWIDVDVSKEQEYSQEVLPDKKDISRWFYMPV + WKEVPFSNTKTEIKGECWLLMDNGQQMSKLLAKDFASNNIHVISVTAGEDFIRHGNNE + FTIKPSRKEDYNTLFEAIYEEGYSIKRVVHLWGLYEKEKELDHYSKFMDLCFYSIINV + TKAIGRYNNASPLTIDIVTSNMERVKQDEEVCAEKAVVLGPCRVIPQEFPNITCNSID + IDLNGKAETTAAEIVRELYANCSGDTIAYREGKRWRQDFEEIEIGENNIQQIPRLKEK + GVYLITGGLGGIGLVLAQYLAEETQAKLILTGRSVFPEKSEWDRWLSSHDENDEINKK + ICLLKTLEAAGAEVVVARADSADKVQMQELIASIRQRFGGINGVIHTAGVPGGGIIQM + RSADKMEAVLAPKVKGTLVLEEVLKGENLDFLVLCSSTLAILGGIGQVDYCAANSFLD + AFAHNYMLKYGTYAVSINWDAWEEVGMAVNSAAQYAPLKSKKEEDFIDITHPLFKRYK + KETPDRVVFESKFDIESCWLLKEHRVMGKSTIPGTAYLEMASATFNILTENSYVELQD + IFFLSPLMVDEKENKQVYTVFEREDDSYILRVKSFDGQKTVEHVKGKVLAAVSEEFGT + LDLKEIIGKCNTSVYIPDTSDSDVDGIVYWGPRWSKNLKKVYIGDNEALALLELPEEF + RDDLREFRLHPALLDVATGFAAQFKKEEGDFLPLAYKRIRVKEALPAEIYSYIRYRED + NDARKQTIAFDITLLDKDGRILVDIKVFELRKVGVGKGDERVE" + gene 1193549..1198093 + /locus_tag="Ccel_0979" + CDS 1193549..1198093 + /locus_tag="Ccel_0979" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; Non-ribosomal + peptide synthetase; + KEGG: pfo:Pfl01_2265 amino acid adenylation" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75341.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR013624" + /translation="MKELSEKGFGKFEDNGILSSEGIDVFKRILSGNRLSQVIVSTKD + LHTMIQQVNTYTKSVTKNNDKSNNEILNQRHKRPNLKTPYMSPNTSMESSIAEIFQSV + LGLEQVGINDNFFELGGESLLAIQVISKLQDTFKVELPLSNLFETPTVATLTAAILRF + KAEKGEYAGISSQLPVIVSDAEHRYEPFPLTELQQAYWVGRNESFSLGNVATHAYIEF + DSTELDIDRFNKSWQKIVKRHDMLRAIVQPDGMQKILEEVPDYEVRVTDMRGRPAEEV + EKFLETTREFMSHQVLPADKWPLFDISATIINNELIRIHFSIDGLLLDGWSYQILFPE + LVYVYQHSDASLEPLEISFRDYVVTELKLRESKLYKQSLEYWRKRLPMLPPAPDIPLL + KTPKELTNPRFTRLESKIEKNTWDKLKARASKAGLTPSGLLLSAYAEVIATWSKSPKF + TINVPRFNRLPLHSQVNDLIGEFASFTFLSVDMTKKESFETRARRIQEQMWKDLEHMY + VSGVKVLRELSQVHGNSSAGIMPIVFTEFPKGRGGKDTSLLNALGDIGDSVYTITQTS + QVWIDNQVYDWADGLHFNWDVVKELFPDQMVEDMFESYCNLLKYLAKDEEMWSKTTSN + LLPSRQLESRNMANSATLELPQIPLQKLFADQVKNVPEQNAVVTSKHNLSYKELYSLT + NKVGRYLRELGVQPNELVAVVMDKGWEQVVAVLGVLNSGAAYMPVDSEVPKDRLWYLF + ENSGARIVLTQSWLDKELDWPEGIRRIVIDSDEFDNIDDKPLEYVQKPEDIVYVIYTS + GSTGNPKGVMVTHAGALNSVLYTNEYFKISSGDSVLALTALHHDMSVYDVFGVLGAGG + TVVIPDAGKRKDPQHWIELIINNRITIWNSVPAMMEMLLEYIESHPGITLESLRLSFL + GGDWIPVTIPDRLKAFSSSVKTVSVGGPTETTLWNIWYVVESVDPLWKSIPYGKPISN + TKYYILNDNLEECPEWVPGVLYCAGVGVSKGYWHDEKKTQEKFIHHPITGERLYCTGD + LGRYMPDGNIEFIGRADFQFNVLGYRVEPGEIEAVLLKHSLIRTAIVSASGEKQGHKR + PIAYVVPKQSNSLTKSQLQEYLREKLPEHMLPGGYVFLEALPLNANGKVDRSALPEYT + AAKGEAAATVIKADSDIFDRVLNLTQKVVDVGEVSREANLIDYGMNSVDIIRIFNLLE + KEFGDRPGMQEFFSNPTLDYLCNFYENIPQISENIQTTETGKLAVESTENIISSFKLI + LDPDERSQFRKKRPGIRQNVQSQDSIELIKPKIDKALLDSYMKRRSYRLYNKKPISFK + KFSSFLSSIYGIEMDAKYKYLYSSAGGLYPVQIYVHIKEGGVKGVEKGIYYYNPAQHS + LQPVTVGVDITEEIHTPFLNRPIYEKAAFSVFLIAELSAIAPLYGDMSMHFVTLEAGI + LSQHLEASAPKSKIGLCQIGNIEFEQVKHLFKLGETQVFIHSLIGGMIDENTLHNQPT + FQDDYYNTSGSKGEWVEVEI" + gene 1198090..1204671 + /locus_tag="Ccel_0980" + CDS 1198090..1204671 + /locus_tag="Ccel_0980" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; + KEGG: npu:Npun_CR072 amino acid adenylation + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75342.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /translation="MSTADLLSKLNRLGIRIEINGERLKLNGPKEALTDSLIEELKNN + KEEIIKLLSCENYGDFEGKFPLSFLQQRLWFLEQLQPDSSAYNVAIPLRLKGKLNEQV + LEQSLNKILERQKIFRTVFCEIDGEPVQVIKRGLTVKLKKMDISDIPEASREHKAFEL + VNEEISHPFRLAEGPLIRGLLVRVNENECIFTAVTHHFVADGWSLKLFMEELAILYSS + LSKGVIPPLPELSMQYTDYSVWERNAMDSGLFEKQLKYWKNQLAGELPILEMPTDHTR + PLNQSHNGSRAYIVIPEGLTQSLRKISHREGTTLFMVLLAVFQILLYHYSGQDDIIVA + TAISNRGKLETERIIGPFSNNLLLRCKLEGEGSFGEFLKHVRDTVIGAFDNKDIPFER + IVEELKPDRDMSRQTLFQVMFTLQNSMKGSMGIEGLTLEPLDIDSKTSKFDLTLELDE + GEELTGWFEYSTDLFEESTVERMTEHFIKLLEGIVQNPKEKISKISLMGEDEKALVLE + DWNRTERDYPNECIHTMFEKQAKAAPDACAIMYRGEHYTYGQLDSLSSRIANYLVKQG + LHIGEPVGVSIERSPEAVACILGILKAGGAYVPMDPSYPKARIAFMLEDSGLKLVLTK + KDILKGVETNAVMLCIDECMQQISEESDDSPENKADSGSVAYIIYTSGSTGRPKGVQG + LHKGIINRCNWMWRTYPYKEEEICCQKTALSFVDSICEIFSPLLKGIRLVIIPDETLL + DVQHFVDELSVSRISRIVLVPSLLQAMLDTVPDIGKKLSELKLWVTSGETLRIELMKR + FKQSIPNGRLINIYGSSEVSADVTYYDTALASETLSRVPIGRPIDNTEIYILDSNKQP + VPIGVAGELYVAGDGLAKGYLNRPELTEERFVPNPYDTSGLMYRMGDMARYLPDGNIE + YLGRGDNQVKIRGIRVELGEIESVLLKFPSVKEAVVVSYGELKGDVRLAAYIVPDVTV + PEVDELRSFIRGYLPEYMIPVSINFVEHIPLLPNGKIDKKSLPDPELFNFKEMSYIAP + RNSLEEMVACIVSGVLNIEKVGIYDNFFDLGGHSLLATQVISRIRREFSIDISLQSFF + EKPNIVNLVELIQNSLEMSNYGKGRTIQRVSRDTALPLSFAQQRIWFLEQLEPASSTY + NIPMAVGLHGSLNTEALEQSLNEIIKRHEVMRTTFREVNEQLVQVIAPELIIKLNIES + FEHIDQAIREEKALQYIREQACVPFKLSEGYLFHLNLVKIDKEYYILLLVLHHAISDG + WSKGVLVRELTDLYQFHSSGKPSMLKELNIQYADYAVWQREWLQGEVLKKQLDYWKEK + LGGRLPVLELPYDHTRPAVQSFKGKTYDLQLSRQLSDSLRVLSRKEGCTLFMLLLSAF + QVMLYLYTGEEDIPIGSPIAGRNTSDTEDLIGFFINTLVFRGDLSGDPSYSQLIRRIK + ETSLEAYAHQDIPFDRIVEELKPSRDLSRQPLFQIMLILQNTPMDEVKLDDISINSIQ + VESGTSKFDLTLELYDDDEIWGWFEYSTDLFEESTVERMTKHFIKLLEGIVQNPKERI + SKIPLMGEDEKTLVLEAWNRTERDYPNECIHTMFEKQAKAAPDACAIMYRGEHYTYGQ + LDSLSSRIANYLVKQGLHTGEPVGVSIERSPEAVACILGILKAGGAYVPLDPSYPKER + IAFMLEDSGLKLVLTKKDILKGVETNAVMLCIDECMQQISEESDDSPENKADSGSVAY + IIYTSGSTGKPKGVQGLHKGIINRCNWMWRTYPYKEEEICCQKTALSFVDSICEIFSP + LLKGIRLVIIPDETLLDVQHFVDELSVSRISRIVLVPSLLQAMLDTVPDIGKKLSELK + LWVTSGETLRIELMKRFKQSIPNGRLINIYGSSEVSADATYYDTALASETLSRVPIGR + PIDNTEIYILDSNKQLVPIGVAGELYVAGDGLAKGYLNRPELTKERFVPNPYDTSGLM + YRMGDMARYLPDGNIEYLGRGDNQVKIRGIRVESGEIESVLLKFPSVKEAVVVSYGEA + KGDVRLAAYIVPNVTVPEVDELRSFIRGYLSEYMIPASINFVEHMPLLPNGKIDKKSL + PNPELLKGQLEFTPPCSEIEKEIAQMWNEVLGVKESGINNSFFDMGGHSLMATQLISR + IRLKFGVDLQLKSFFSSPTIKSIAKSVEDQILMDASSDQINDVLNLLEELSEEDILNM + LDY" + gene 1204712..1206337 + /locus_tag="Ccel_0981" + CDS 1204712..1206337 + /locus_tag="Ccel_0981" + /inference="protein motif:PFAM:PF00282" + /note="PFAM: Pyridoxal-dependent decarboxylase; + KEGG: spc:Sputcn32_1469 pyridoxal-dependent decarboxylase" + /codon_start=1 + /transl_table=11 + /product="Pyridoxal-dependent decarboxylase" + /protein_id="ACL75343.1" + /db_xref="InterPro:IPR002129" + /translation="MELTFNPQNFSPEETQSGETKKEILDLFSVTDSSLLKARNETDR + RVSEVINEFIGGSEVSTDVRLNDLLTNFCKSEIPDKPLNVDEYIAFFNKNIIRHSTRT + SSPRYIGHMTSALPYFIKPLAGLIVTLNQNVVKAETAKVLTPYERQVIAMLHRAIYQF + DSDFYNHHIQNRESVLGILTSGGTIANLTALWCARNSALGPCEGFNGVEKEGMDAALK + FYGYKDAVIIGSAMMHYSFEKAADLLGIGSNNSIKIPVDKNNHIDLSELRKTVEECHR + KRRLIIAIIANAGTTDCGAIDPIERVAEIAYKEGCHFHVDAAWGGPLLFSDKYRNRLK + GIELADSVTIDGHKQLYLPMGLGMIFMRNPQAAKSIEKNSNYIIRRGSIDLGRRSLEG + SRPAMSIYLHAALNIIAKGGYEFLINEGIKKAEYMAGLIKSMREFELLTEPDMNMLLY + RFIPERLRGKAADHMLDDADNEVINKYNEQLQKLQRNGGYSFVSRTSFSSELYQNKSL + VALRAVLANPLTCEANINEVINDQLNIAKRLNL" + gene 1206382..1212402 + /locus_tag="Ccel_0982" + CDS 1206382..1212402 + /locus_tag="Ccel_0982" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: non-ribosomal peptide synthase; amino acid + adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; + KEGG: ava:Ava_4099 non-ribosomal peptide synthase" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL75344.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010060" + /db_xref="InterPro:IPR010071" + /translation="MSDNRLEIIKQLSPAKRELLIKKLRKEVTEKKDQGIPRYTGDKP + APLSFSQERMWFLNELQPDNPAYNIFFAARIKGILEIPVLQKSIDEIIKHHEAMRIVI + GLSDGKPVLIETPAFSVPINFIDITDVEQELQESTIRILATEEAQKTFDLTKSPLFSF + TLLKQSEKENVLFIKMHHIISDGWSMRLFVKEMSELYEGYKNGNPVILPELPIQYRDF + SYWQRNRLKDNLMESQMLYWKQQLGNCSHILELPTDHPRPISQRFKGAIKRFSLSPQL + GETIRELCKREGVTLFMTLISAFYTLLYRYTYQEEIVVGTPIANRNYFETERLIGCFV + NTLALRTELNGEDTFKELLLRVRNVCLGAYANQDMPFDKLVEVLHPQRDLSRQPIFQV + MFILQNTQINKIVQSDFDISPIQVDSGVAKFDLTLELYDEDIINGWFEYNTDLFNEDT + IERMIGHLKNILEGVVKNVEQRIADIDILGEKERSMLLEEWNNTEYDYPEKLCLHQQF + EKQAEKNPDGIAVIFEEQQLTYKELNLRVNQLAHYLRRLGVGPDTIVGVLMDRSLESA + IALEGILKAGGAYLPFDTDCPKERLTFMLEDAQVPILVTQERHIEALKDINTIKICID + ANYNEISKESIENPVNIASMNNLAYVIYTSGSTGKPKGAKLPHLALFNRIKWAQGNYK + LNATDRVLQKTPMTFDVSVWEYFWPLAVGAGLVMARPGGHKDSAYLVDVISEKKVTTI + QFVPSMLRAFLEENEIKKANCLRRVISGGEALSVELHDRFFEKLDVELHNQYGPTEAA + IDVTYWKCYKGCKRHTIPIGHPLANTKLYILDKYFNPVPIGVPGELHICGDGLASGYL + NRPELTNEKFISNPFSDKHGGRLYKTGDLVRYANDGSIEFIGRIDHQVKIRGLRIELG + EIEAMLLQHPDVHASAVIVWEGSEDVKRLVAYIVMESGKEFNTTELRSYLKAKLPDYM + VPAVLMNIDALPLTTSGKLDKRGLPAVDFSRDMMEQPFAAPRNHVEETLAGIWADILK + LEEVGIHDRFFELGGDSILSIQVVARARQSGIYITPKQIFEHQTIEELAQVVNTEKLV + HSEEGLVTGRVPLTPVQHYFFEQKLEQAHHFNQAVILEVEAGVSSCMVENAIQQLLIH + HDALRMTVENPDSGWGEIEREPDYSRYYTVLDLSTLSVGEQKKELLKVSSEMQASLDL + AKGSIFKAVYFNMGAEQLARLVIIIHHLVVDGISWRVLLEDLQTLCKSNSLPQKTTSL + KYWAEKLASYAQSTDIEKHLSYWQSLSEVSLPALPSDFEANYDMNTEGEKQTISVFLG + SGETKALLDEVPAVYHTQINDILLTALTQAFAEWSGQNRLLVDLEGHGREDIFTDVDI + SRTVGWFTTIFPVLLDFGNSGDIGEKIVKVKETLREIPCGGLTYGLLKYLGKYKKQLS + KIPKGSILFNYLGQFDQITNEDSLFKVIQEPIGTTRGEKNLRSHLLEVNALIGGGVLQ + VDWEFSRKIFNKKTVEKLAKGFIKALEGIIQYCKTAQTRYTPSDFPMSGLTQQKLNEI + VGNNIEIENIYPLAPMQQAVLSYNLFSVSSGTNIQQLSWLIEGDLDIDLFKTAWQKVV + DKYAILRTSFIWKKLKKPLQVVFRSLRLSFEEADWSQLPSKQKEQALADYMEGNRKRG + FKVSEAPLMCCFIACLGKGVYRFVWSYWTSLFDNWSWANIIKEAFQNYKLLSEGNNLP + AISSSPFSSYIQWIMQQDEAQAADFWRNELKGFNSSMDIGIERRTQDYLNKSFDAGEV + EVGFTEEETKLLTAFIRKYSITLGSLLQGAWVLLLSQYSGQEDILYGVLTYGRPASLK + DVDSMVGLFSNNLPVRVRVEKDVNIVDWLRDIQDKQVVLRQYDYVTVQQIAKWSLVPL + SVLQRAIYDRTFIFVKAPEEDFFSQQSEDSVRLSQYQNTLQLNIPLRLYAEPSNKILI + RAKYDSATFSGEDIQSMLRSMKQLLGKMSSSPDVKLYDLIKNKHDTEL" + gene 1212422..1213750 + /locus_tag="Ccel_0983" + CDS 1212422..1213750 + /locus_tag="Ccel_0983" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: mae:Maeo_0046 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75345.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MLIDDIMGKIWEKNYTQYKKIYDDAIETDTNKLFKILSEQKMGI + INYPGVTMNLLATSGCPHRFREDRMSGCSMCNYQSNFLSSNAAMAALREKDINLYAKA + VRLSFENARGVMSKANAFELISANDTLNQKEFPTEAFEELFSKNDLFVRKPYKYIMET + RASSVTKESIEILKKYIGEKSRVLIEFGIEAGDEWVRNHWINKNITDEEIKTAIALIH + EAGFKVSVDIIIGIPGLTEQQSIDIFRQTVDWADKLLADEIICLPLNRKEGTIQGFLY + SELKDNQKLSEVGLVNGEHTGLPWLFSVLDAVFYVAKESPHAIDKLNFAQLSTSQNLI + ENTMSYNKELGCSCSQLIIEALERFRRDKNVNALGEVREIIKNDSCYGEYTDLLEKQK + GAGDIPATINLIIGEVAKKLWPESWEEKISSFEKELALYKGNNKKNIWRD" + gene 1213752..1214741 + /locus_tag="Ccel_0984" + CDS 1213752..1214741 + /locus_tag="Ccel_0984" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dde:Dde_1603 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75346.1" + /translation="MTTQEKKTNNVYREKILNSVLEKYYNPDSKYDYCVLFSGGKDST + YLANIMKQMKGGRVCTLTVDNGFEDEVFLDHVKKVADKIGVDSYIITPPKEDFELLFN + YVIKEPKLRAVDSNAICYFCGQYIMKAGIRFAEENNIPVVIHGMSPTQYNLPDKLENE + EVSEQAFIRNIELLEMYRNKNIQDVYKLAKTLYRYNNDPQIKEIMDKTFYQSKKVKMI + IPFQYLDYNVENIKSIIEKELDWVNMFGYSNSLYISSGCRMFEIFLLMEKKIPGFRVH + EHREFAQDFNKGHVTKKAYDYALDVAKTLQDQEEISPTMHSLIKRIGLEEELL" + gene 1214769..1215017 + /locus_tag="Ccel_0985" + CDS 1214769..1215017 + /locus_tag="Ccel_0985" + /inference="protein motif:PFAM:PF00550" + /note="PFAM: phosphopantetheine-binding; + KEGG: npu:Npun_R3441 putative D-alanyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="phosphopantetheine-binding" + /protein_id="ACL75347.1" + /db_xref="InterPro:IPR006163" + /translation="MQNLNIARIRELLKETMEMEGDIDTVSPDEDLTNIGMNSVSFIQ + VIVAFEEEFEIQFEEEDLDIEHFRTINSILEFLKTKTN" + gene 1215028..1215873 + /locus_tag="Ccel_0986" + CDS 1215028..1215873 + /locus_tag="Ccel_0986" + /inference="protein motif:PFAM:PF02737" + /note="PFAM: 3-hydroxyacyl-CoA dehydrogenase domain + protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; + KEGG: npu:Npun_R3442 3-hydroxyacyl-CoA dehydrogenase, + NAD-binding" + /codon_start=1 + /transl_table=11 + /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding" + /protein_id="ACL75348.1" + /db_xref="InterPro:IPR006108" + /db_xref="InterPro:IPR006176" + /translation="MKRIGVVGAGVMGIGVAQNFAQKGYPVTLVDINKDILKHAESEI + RNNIRFYSLFNKSEKLEDADTIIARINFTVELQELEASDFVVENITEKWEEKKEVYEK + LALICSELCILLVNTSCIPITRIAALTKNPDRVIGTHFMNPVPMKTVIEIIRGYHTCE + ETIEATKDLLRGIGKECIIVNDLPGFVSNRISHLYMNEAAFVVQDQVASPEAVDDIFK + KCYGHKMGPLETADLIGLDTVVNSLNALYESFQDTKFRCCPLLSKMVDAGLLGRKSGR + GFYEY" + gene 1215901..1216140 + /locus_tag="Ccel_0987" + CDS 1215901..1216140 + /locus_tag="Ccel_0987" + /inference="similar to AA sequence:KEGG:Haur_3969" + /note="KEGG: hau:Haur_3969 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75349.1" + /translation="MEEIKVKIRAFLSRFFRKHELKDNEDIFALGFVNSLFAMQLVMF + LEKEFGIRVDNKDLDLNNFRTIDTITDLIISKKGE" + gene 1216164..1217300 + /locus_tag="Ccel_0988" + CDS 1216164..1217300 + /locus_tag="Ccel_0988" + /inference="protein motif:PFAM:PF00441" + /note="PFAM: acyl-CoA dehydrogenase domain protein; + Acyl-CoA dehydrogenase type 2 domain; + KEGG: npu:Npun_R3440 acyl-CoA dehydrogenase + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="acyl-CoA dehydrogenase domain protein" + /protein_id="ACL75350.1" + /db_xref="InterPro:IPR006090" + /db_xref="InterPro:IPR006091" + /db_xref="InterPro:IPR006092" + /db_xref="InterPro:IPR013107" + /translation="MIIELTPEQLKYQEEVKTFVDTVIKPMAQQNDREEQMPAELIKK + IGENGHLGSVIAKEYGGQELDMISIGLLNEEFGRGCSSARSLLTVHGMVALAIDRWGT + QEQRNYWLPRMSKGHIIGAFGLTEPNVGSDAKSIETTAVLNGDCYVLNGKKKWITMGQ + VADVFLIFARCEDKPTAFLVNRDTSGFSTKPIKGLMGARASMVAELIMEDCHIPKENI + VGRVGTGLSHVGLNSLDYGRYTIAWGCVGLGEACLEESVRYSRKRKQFGQPLRQNQLI + QKMVTEMSVNIKAARLLCLNAGYLKDIGDPDTIMETWNAKYFAAKMVVKVASDAVQIH + GAKGCCNEYPVERYYRDSKINEIIEGTTQMHELLIATNVFRNIR" + gene 1217357..1218409 + /locus_tag="Ccel_0989" + CDS 1217357..1218409 + /locus_tag="Ccel_0989" + /inference="protein motif:TFAM:TIGR01686" + /note="TIGRFAM: HAD-superfamily phosphatase, subfamily + IIIC; FkbH like protein; + KEGG: npu:Npun_R3439 FkbH like protein" + /codon_start=1 + /transl_table=11 + /product="FkbH like protein" + /protein_id="ACL75351.1" + /db_xref="InterPro:IPR000182" + /db_xref="InterPro:IPR010033" + /db_xref="InterPro:IPR010037" + /translation="MKELDCRGTKVKCVVWDLDNTVWDGVLLEDGNVNLFNEVASIIK + TLDSRGILQSIASKNDYDLALAKLEEFGLREYFIYPQINWNSKSFSIKEIAKAINIGV + DTLAFIDDQQFELEEVKFAVPEVFCIDASNLGNLLDIPEMNPVFITEDSKNRRLMYVS + DIERNKLEDEFEGPKEEFLASLNMSFTIMHVQEGDLQRAEELTVRTHQLNTTGYTYSY + EELDSFRKSNKHKLLIASLEDKFGTYGKIGLALVECNDDEWILKMLLMSCRVMSRGVG + TIMINYVAEQAKKAGVRMLAEFIPNDRNRMMYITYKFAGFQEIQEKNGLCILEKDTNE + IPPYPDYIRVVKEDIA" + gene complement(1218539..1220878) + /locus_tag="Ccel_0990" + CDS complement(1218539..1220878) + /locus_tag="Ccel_0990" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: cpy:Cphy_2734 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75352.1" + /db_xref="InterPro:IPR000005" + /translation="MIISHLRKIFKVLSVRASKKYLLKYFITYFAVLIVPLIIGYAYY + VNAYKIVYSDAINENNAILRQASSILEQRFGEADSMANQIVTNSNVNAFQGIHDPLRY + PNSYSIIRTRNSLTNYNTSNKFVWNYFIFFNKSEMVMNNEISYTYEQFYKRYMSFKGI + PYEKWYRTITENLCEGGLSEEIGAELYNYTPSGTVGMTIVTYSKPLISYGQNDGFVML + VINKKEISELLSSINTDNGGVTYIENNDGKIITYFSGEKCDIQAVQASVNKSFTGSEN + SSEISINGKKMMVNYIKTNNDGFKYVAVQSKKVVLEKANNLKVIIYVVLLISILLGTL + ISYYMAKRSAKPLQDILNNIQISEISEDAFKNIKYTLSELGNNNRNLKRTIDEQIPIL + KTTFLTRLINGEFNSQEEIGKIARCIRLNFKNSVYCTVIFKFDTDVNNYDTLELTIVN + SFKQLLREILGRVVPDALICDLDEQQLVMLVVYPASQKGQLNPYIEDMAARLKQEMPK + NLFESLLISCGNIVDQLNDIPISFENAKLAFKINSANRHSNILWYAGTGNYTVNYYFP + TDLQTKLINNVKAGDKGAVKSILNLLFNKNFIDSNLSTSLHKLFIYELLGIIIKLWNQ + IGFDEKTYNYIISNTDNIDKYSELKQIKIITDSYYMLCEIINGQSDKQYLNTNNQIIE + YINEFYHDCNISLASIASQFNMNESYLSYIFKQQSGIKLSSYIENLRIQKAKELLRST + ALPISEIAVKTGYFSTNTFCRAFKRVTGINATTFRGSNA" + gene complement(1221002..1221832) + /locus_tag="Ccel_0991" + CDS complement(1221002..1221832) + /locus_tag="Ccel_0991" + /inference="protein motif:PFAM:PF02311" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; AraC protein arabinose-binding/dimerisation; + KEGG: csc:Csac_1725 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75353.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003313" + /translation="MERIFSVLTERDISLPIFVTGVGYEHYQDHVTRKEGFPNYHLAF + CEQGVGKLIICNREYLIEQKTAFFFYPNVPHEYYPVAEPWSLRWIIFSGSSVHTLLNA + AGIGRFEVYMLNSPEEVTFCCNKLHKILLEKKSTSMLEASGVLYNFLANINKLIEEVN + SEGDTQLIKKLNSIIGFIKNNFKKDITLEELATHAGISSSYLCRIFKKEYGISPFTYI + LRCRVNAAKEELINFPDKSIKAISLDTGFNSCSYFGSVFKEYEGYSPNRFRELYFMPQ + " + gene 1222003..1225173 + /locus_tag="Ccel_0992" + CDS 1222003..1225173 + /locus_tag="Ccel_0992" + /inference="protein motif:PFAM:PF02837" + /note="PFAM: coagulation factor 5/8 type domain protein; + glycoside hydrolase family 2 sugar binding; + KEGG: bth:BT_4151 beta-glucuronidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 2 sugar binding" + /protein_id="ACL75354.1" + /db_xref="InterPro:IPR000421" + /db_xref="InterPro:IPR006104" + /translation="MDKRSFPLDGDWYVALDEKEIGIKEKWFESTFTEKVKLPGTLDE + NGIGSLVTGTDTFRLNRIRKYVGAAWYNRLVVLPDDIVEKHVTLFLERCMWKTELWIN + GNYAGSQNSLSTPHKYKLDGMLKAGENLISIKVDNSPIYNLGVMSHGYSEEVQTVWNG + IVGRIELDIRDKVYVERANVYSDMESSKLSTRLLLVNTASKAVEGLISLSVRPQDGEN + VIIRDSYYFSIGANSSVNVELTQAYEDKLGLWDEFNQNLYRMDINLECQCEKENEMYS + DSSQILFGIRSFKAEGPVFRLNGKKIFLRGTHDAGNFPITGYPSMEVEDWKRIYAIAK + SYGINHFRFHSWCPGEAAFAAADEEGMILQAELPLFGFTAPPLGQDEPRDSFLREELL + RILEEYGNHPSFCMMCMGNELRGDYEMLSEFVEMGRKTDGRHLYSSAANNAAEPGLGI + KPNKGDQYYVAHEARINGERVNRRCENVFNNERPETISDYSETLKGIEVPTISHEVGQ + WEVYPDFEEIKKYTGVLKAKNFEEFKGSAAAKQVLNKNKDFVMASGKLAVLLYREEIE + RSLRTADYGGFQLLDMHDFPGQGTALVGWLDAFWDSKGLVEPREFRNWCNHSVLLARM + EKRVWLNSEVFSAEINFANYSQNDYSQLNIRWELTRSDGTMYSCGKFNNIFIPQGNLS + YIGVAAAELNKVETAEKLILTIVTDGICITNQWDIWVYPEKLAVEMPEDIYVAESWDD + GVSETLGNGGTVLMFTGAVRNSEAMCFTTPFWNTQMFENQRKTMGILCNPNHPALLDF + PTEYHTNWQWWELLADSKCIGINELPAGFEPIVSAIDHPVRNNRLGVIFEARVLSGKL + LICSLDLNGDLGGLPAARQLKYSILNYIQSERFEPEFYVDESIMANMLLKNTASNLKL + LTKNIKASNTKYSSKVEYILDTDTSNFWVTMGGQYPYVIDIELTESTAIKGLTYWPRQ + DGMTIGLISRYEIYISGDPVQYGKPVASGSFKNTLEKQEIILDWIDDGFNVTRSKTGK + YIRFVAVKGFNNDREAAIGSLDIITV" + gene 1225844..1232704 + /locus_tag="Ccel_0993" + CDS 1225844..1232704 + /locus_tag="Ccel_0993" + /inference="protein motif:PFAM:PF06452" + /note="PFAM: S-layer domain protein; Fibronectin type III + domain protein; Carbohydrate-binding family 9; + KEGG: cth:Cthe_2195 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate-binding family 9" + /protein_id="ACL75355.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003961" + /db_xref="InterPro:IPR010502" + /translation="MKLVGWYQYRKCLSVFLALIIAFGSFFSLAASPVAAEGETNDPV + QATFYVSPAGDDNNPGTIDEPFKTLAKAKEHVRTLPKTGGDIVVQIADGFYPLDETLV + FDKDDSGSASCTIRYEAAPGAKPVISGGEMLEKGVWTEATDLTQTGGLTAYKTTLNRD + EKLRAIYVNDKRANMTLSGTITSADRTTEGTPTVSFDGTDNPWAWQNGNNIRAAIVFS + ESVGLTPDTKNPQNIEAESMGGSTARWARPFVCFASAESAPEASGKVGGTMLRFQMPY + AAISQSLSNNTQYNPGNNQVIRNAFEFLNKRGDFYFDQAESTLYYIPLEGEDINTADV + VIPKLETVVDLRGIPVGDRLNPVEGSDEGRVTNITFDGLRFAHTDYKLYELTGTYTLS + DGSGPVTTSSRGFASVQGCIVNKVYFPSYINWHETFYRGYDIPPAAVMVNAARNIKVL + NGEIALTGFNGIHLENDVKDCEVTGNYIADTLSSGVVVGHPTHIYENDKPTTHESAVK + VGETPIGDWAGVDKEKYTSGTEAVPQDIFITNNFLYRNCYGFPGANSLTSFYTTNMQV + LHNYLYDSTYGAMSIGWGWCEYDGYGYTNHGTDKNGSPYAGTHETSLARSPDISTTSR + DNKINYNRVEEICTVVNDSGAIYSLGRQGDPGNLPDGGTWDTVDSLTSSPVTDPNSNW + HPDNWTNFTEMNYNFLDPNPNNKPTTSNNWTNGFHPDEGSTFIKMIGNVVQSKLSHSP + GRSRLYEFNNWKRKSDMIAIDGFVDGNNDQNGGPRITFKNYKSEERIWPVRGNEIVLN + SGLTDEYTHMIPRSLIADTEFELASNVIMGKGETLNRRGLLKPEDTVWLAPADTTEFV + EGSNMTKAAGDEKTIVAPSAAGEYKLYIVYADGRETATSKFTAYVDASASAVNVEDGK + NYEVSAVRPLKLTLSEDFTYTLNGEPVVNGYDISTEGSWTLVLSTPTAPATKTINFTT + TVSLANKLLPADVSVAPGGTVRFAYDLDDATKKIWISSSSGGHFDGGDDESVASGDML + GMAAPVVPGPYVIFVLAEDGEVLSQSHARVVVRDMTPVDIPREGLDLWLKADEGVTTD + DTGNVIGWKNMGGVAATLVPADVPGTGGDNLGPANGNPTLKKDVYDYVNFDAASRPLK + AKNFKDYNDKSEMTIYTLVKPTTTANNSSDQSGLVYFGLNENYNDWAANDGWSGINLG + VGTNRITLRFGNTVQWSGGGSTFTTDIAGLTSVRAQLNGTNREVYVNNISIGSDSNSA + ALKGNRSDLGVGYTMSAVTPYRFLGQVAQILIYDRVLEADEIVKVEAYFDEYKKGNGG + IANPVSQAVDKTLLTALINDVNNLDDTIYTVDSWNTFESALSDAKTAASNQEIDQEAA + DNAYFALRSAFKALTLLPSGIGTSAYGTPVLGGAELDPLWNTTVTLPIFKHLTMANGP + ANGTAKVLWDDTNLYVLVRIKDPVLNSSNSAAHEQDSVEIFVDETNSKAASYGAGMGQ + YRINYLNAKSFNPSSISTGFESFAKVVDGGYYIETKIPFKTGVPEIPKNGHVIGFDVQ + INDAGATGGRQDIVMWHDETGNSWSNGSQWGVVTLVKADSNDTAAPTWPEGSTMTAPE + IGINAVTLNWSPAQDDVGVTSYEIYNGTDMIGKVAGNINSFEAANLNAETEYTFTVQA + VDQAGNTSTDGPSVTFTTLPDDGQGDTEAPYWPEGSSIAVSEVTETGLTLTWPAALDN + TAVTGYVIYDGATQVAVLAGDVTSYAISGLKAGTEYTFTIKAKDASLNWSETGLSVTE + TTKQEEPKDTTAPVWPEGSTLSAAGVSQTGLQLNWTAAQDDTGVNSYKVYRGSTLIAT + VPGTTSSYNVSGLSSGTSYVFSVQAGDAAGNWSSNGPTVNVTTKSASSSSSTPPPVET + TVPGKVKISAPVVDTAKGISKVTVDANELSRALTQAKVATVEIPKTAGMNAYVTSLPS + SALVSGDASKAIQIVSEEAAVTLPLNMLSATDLAGADRIELSIEKSDAGELDSPKKAI + VGDKPVFDIKLIVNGEEKAWSNAEAALTVKIPYAPTSIELANTEYLTVWYLSPDGQAV + KMNDAKYVPSEKAMVFTTTHLSKYAVVYTKKDFLDMQKHSWAVEAVKALAENGIIEGT + SGTEFSPAEKITREEYVAWLVRTLGMTADFNNNFSDVKETDKYYKEIGIAKELGISVG + YKGEFSPEREISRQELVTMTINALKIADKPLEIGTAEDIKKYTDAGKIAKYATENMAT + MVRMGFITGNSKTTLNPVGVATRAEAAVILYKIYLMEW" + gene 1232920..1234731 + /locus_tag="Ccel_0994" + CDS 1232920..1234731 + /locus_tag="Ccel_0994" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: cbe:Cbei_4458 histidine kinase internal region" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL75356.1" + /db_xref="InterPro:IPR001936" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MKNNKFISFAISTFNNISIKSKIFIFYAGILLASLSIFAILTIN + ISNQAIVEKVTKNAERELSLIDKSLLNLANNSENYARILSMDNRMQNQLERIENNELD + SIDNIEVEKTLSTVISNVVQPNTNIAAASIMSSKYMFFDVGYIDNSSISRYFNRDLIN + SITKNKVPTWTRLFKVRYKFGGDEDVFAIAKTIIGMDTGHVLGTAVLYLKEKDVAAIY + LNNIVNENDKFYIVDNQKNIISTQDKSELYRKFDEELYLGKYKLEDISDTKSLIRNIG + DKKVLITVQNFDKLDWKVVSVIPLDEITYENKKMTQLILIFGVTCLICAFVASYLLSY + TISKPILKLVNIMKEIKSGNLKLRADLNVKGEIGMLGDGFNSLMDKINVLVEHIYTEQ + RLKRENEFKLLQSQIKPHFLYNTIETIISFIKLNLKDNAMLTAKYLAGFYRISLSKGN + DIITIRDEMNLIDNYLSIQKMRYVEYLDYRLEFEEEILKYQIPKLTLQPLVENSIYHG + LKQKEDRGILIIKGEFENGEIKIEVFDDGVGMSEENINRVLNRLINGQKSNDFGIYSV + NSRLKLLYGDEYGLSIESKESEFTRVTLRLPAIDTWG" + gene 1234736..1236364 + /locus_tag="Ccel_0995" + CDS 1234736..1236364 + /locus_tag="Ccel_0995" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: csc:Csac_0684 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75357.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MLKIMIIDDEFYFREALKVSIPWKEYGFEICGEAKNGKDALERV + ADLNPDIMIVDINMPIIDGLEFIQSVKEKGIESKFIILTGHSEFNYAKQAVQLGVNNY + ILKPVNEEELKSSLFEIKEVISKERNVKFEFEGLKQQVRDSLPLLKDKFLNELIQGSL + IPKENETLKKMEYLKININSDYYLVITIELDCDESTGWDNEEKQLWKFAVSNISSEIM + GEKFIFDICYDIDDRICIIVGIDGAQNIGDFLTLLESRLELIRSAICKHLDFTVTMGV + GSEKTELFDIPISYKESIIALKNKLTLGKNRIILYSLVAESGIKGTAFSGEYRNKLLM + NIRTADEEEVNKLISQIFMRVRGENIHHQILFVVCIEMVAACMEAIVEMGLHIEDIIT + GNSFNIIEEIQSKKSIDEMENWIKDIFKHTLETIKRNKISKASRLIEEVKNYISSNYQ + SSELSIDEIARNLFVNYAHLCFIFKRDTGFTINEYLTEFRIKKAKELFDSGNTLILDV + ASKVGYADASYFGKCFKKYYGLAPSKFIENIRKT" + gene 1236408..1237775 + /locus_tag="Ccel_0996" + CDS 1236408..1237775 + /locus_tag="Ccel_0996" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: gtn:GTNG_1780 sugar ABC transporter sugar-binding + protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75358.1" + /db_xref="InterPro:IPR006059" + /translation="MAKRCKIYLLIFMLSITAACSDSTGLYKNAGTSEAFTPTNKVKI + LFLSISDSDVRENIREHYIKANLEKEMPDLEVEFDLGGGGQDYANKLKVYNSSGNMPD + VWFSEQNLSTVVIDSGNALDLAPYIYKWEFDKKFTEKEFIMPDKNGRIYSVQSGNDMF + TTPRLWYHKNIFKRYGIQVPNTYDELLKVCELLKVKGLVPISISGRDGWTLNLHLLQT + MIMAEEPQVALDMLNGNTDFTNPVIQRALERIRKLVQVGAFPYNTANLDYEPAINMYT + SGRAAMLSAFSWELPRLEKLAPDTDFMPWPSVRGGTDNTKAVQYWGAPLSGYMVWAKT + KNPEAAARFAMYCATQDALYYNIESKAPTMLNTGVRIENTSALAKKDLKQLDMAEIKI + PSIWSAAFNTRTSAEISVQNRKLLTGRYSPDEYIKAINPLWIENAKEIRERSYDIHYK + FHPQP" + gene complement(1237684..1239477) + /locus_tag="Ccel_0997" + CDS complement(1237684..1239477) + /locus_tag="Ccel_0997" + /inference="protein motif:PFAM:PF07944" + /note="PFAM: protein of unknown function DUF1680; + KEGG: sus:Acid_1242 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1680" + /protein_id="ACL75359.1" + /db_xref="InterPro:IPR012878" + /translation="MFENFNLDKIKLSDKYFSVRRETAKKYVNDFDINRLMHTFRKNA + GIESLAEPLGGWESEECNLRGHFVGHFLSACSKFAFSDNDDCLKTKADNIVKIMAECA + SENGYLSAFGEEMLDILETEEDRGVWAPYYTLHKILQGLVDCYLFLNNKTALSLAVNL + AHYIRRRFERLSYWKTDGILRCTRVNPVNEFGGIGDVLYSLYEITGDRKIFDLADIFN + RDYFIGNLAADRDVLEDLHANTHLPMVISAIHRFNLTGEYKYKHAAQNFYKYLLGRTF + VNGNSSSKATSFKKGEVSEKSEHWGAHNHLENSLTGGESESCCAHNTEKIVQQLFAWT + EDERFLEHLEILKYNAVLNSTSTVTGLSQYQQPMGTGVKKNFSGLFDTFWCCTGTGIE + AMSEIQKNIWFKDKDTLLLNMFIASTVQWDEKNVKIVQNTAYPDNTVSVLTVSTSNPV + SFTLMLRKSQVKSVKINGKSFNFIADNGYIYIKRIFNNNDTIEIEIDSSLHLIQLKGS + ENKAAVMYDRILLAQLGQKPYLDAIDCDNVNQRLIKAGSPLLSFKICDNEDGCTEFIP + LFRVEDEIYSVYHSFSPLFPSRFQSTEDLLP" + gene 1239924..1241279 + /locus_tag="Ccel_0998" + CDS 1239924..1241279 + /locus_tag="Ccel_0998" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cpy:Cphy_3409 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75360.1" + /db_xref="InterPro:IPR006059" + /translation="MIKLTKLTSGVVAIAMLFSLTACGGGNEKGSDSTEASSSGAAQT + SQAASNNTEKVKIKFLSYSTDENRNNIRDKYIKVNIEKDMPNVEVEYDLGGGGQDYAN + KLKAYNASGDMPDVWFSEQNLSSVVVEAGNALDLAPFVQKTGFDKKFKMQEVVTPDKD + GKLYCVQPGADQYFTPRLWYHKDIFAKNNIQIPTTFDELVKVCETLKGKGVVPMAIVG + KDGWTPNLHMLQTMIMAEDPQVALDLVNNKTDFSNPVVKNALGRIQKLVQVGAFAPGV + TNVDYGPAVEAYTSGKAAMLAMFTWETTNLEKAAPDTDFIVWPSAKEGNDANSSIQFW + GAPLSGYLVSANTKNPEVAANFAMFCATQDALYYNTEQKAPTALDTGIKIEGISPLLQ + KSLDQFDAATLKIPSLWAATYNTKMSAEISTLNSKLLTGKYSPDDYIKEINPVWAENF + K" + gene 1241366..1242250 + /locus_tag="Ccel_0999" + CDS 1241366..1242250 + /locus_tag="Ccel_0999" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: csc:Csac_2515 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75361.1" + /db_xref="InterPro:IPR000515" + /translation="MNKTYGNKLAIFIFSFPALLLFTVFVIYPLFPEILISFQKNDGF + KSMGYVGFENYINVLKDSTFWRSNINTFTMVLISACIGLPLSLLLALIMDRQGERVKR + FFKASSVFPAILSVTVIAQMWIAIYEPQWGLVNSILRGVGLGNFALEWLSNEQTVVLA + ITAAFLWQYIGLNALLFYTGIKAIPKTYYEAAVIDGAGFFRTSVKITIPLLQDVSKYV + LVLSLLGCMSQFAHVRIMTAGGPGDVSRTVIYQLYYKAFSASDFGQGCAIAIIFVLEC + LVVTFFINKFVAREKIEF" + gene 1242260..1243099 + /locus_tag="Ccel_1000" + CDS 1242260..1243099 + /locus_tag="Ccel_1000" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: rxy:Rxyl_0623 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75362.1" + /db_xref="InterPro:IPR000515" + /translation="MDVTNKNKLYKILVNTAMVFIGLTFLFPLYWMINLSFKSRSEVY + DNPFGLPEQWVFDNYSGALEKFNFPRYLSNSLIYSVSTIVITIFLGSMLAYCLSRMNW + KFKGFALSYISMGLIVPAQVVIIPLLMMTRSMGLKGTHLGLILPYSAFALSSCVLMLY + AFFRGLPKELEEAACIDGCNIYQTYFRIILPVIKPAIATQCVLIFINIYNEFFLAFIL + AADDKIRPLTVGLLNFFVSIGVSHWGQIGAAMIITSLPMIIVYMFGNEQIENALTAGA + ILK" + gene complement(1243241..1244164) + /locus_tag="Ccel_1001" + CDS complement(1243241..1244164) + /locus_tag="Ccel_1001" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; Cupin 2 conserved barrel domain protein; + KEGG: bcl:ABC0403 AraC/XylS family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75363.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR013096" + /translation="MSIYNINNRYARPEAFYALNLTEFHMPPHTHNRCEIMYVVSGNC + VVSAKKEMITLKKNQFIFLDQNVSHCLYIKSGTPCTILNLEFLCSPNKGGIDLNEMLN + NSETYRGFIDRKEDFLVLNDNGKVGYALKDLISELEKKKSSDQFLLRILFFRMLVEFT + RNIGQDSHYLGSLHLRKAQKYINEHLYEDLNVEMIAEYTGINHSYLQTLFSKQFNCGI + IAYVNKLRMEHAAFLLNNSNMSITDMAFHLGYNSRQHFGYIFEKHYNMSPQQYRKLKG + QNIKADTGGGQWYADENGHFKNQVLLKRISN" + gene 1244410..1245879 + /locus_tag="Ccel_1002" + CDS 1244410..1245879 + /locus_tag="Ccel_1002" + /inference="protein motif:PFAM:PF02056" + /note="PFAM: glycoside hydrolase family 4; + KEGG: bcl:ABC0412 alpha-galactosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 4" + /protein_id="ACL75364.1" + /db_xref="InterPro:IPR001088" + /translation="MSFKVAFIGAGSLVFTRTLFTDIMSVPEFRDIKIAFTDINGDNL + QKVAELCQRDLEANGITTKIQATTDRREAFKDAKYIVNCVRIGGLEAFETDIDIPLKY + GVDQCVGDTLCTGGIMYGQRVIAAMLDFCKDIREVSAPGAILLNYSNPNAMATWACNK + YGGVRTIGLCHGEIHGEDQIAQVLGIPRNELDIICAGINHQTWYISVKHKGKELLDKI + LPGFEAHPKFSEEEKVRIDVLKRFGYYSTESNGHLSEYVAWYRKRPQEIMKWINLDSW + INGETGGYLRITREERNWFETDYPKILAEPPKKYDGSSRGREHCSYIIESLETGRKYR + GHFNVMNEGCITNLPYESVVEVPCYVDGNGISVPKVGDLPLGCAAVCSQSIWVQRLAV + EAAVSGNVTLLKQAALMDPLTGAVCNPPEIWQMIDEMLIAQEKWLPQYVEGIKAAKER + FAKGNLIPINEGYRGAVRQRVKTPSEVAAERESRSITAD" + gene complement(1245888..1246757) + /locus_tag="Ccel_1003" + CDS complement(1245888..1246757) + /locus_tag="Ccel_1003" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; AraC protein arabinose-binding/dimerisation; + KEGG: cbk:CLL_A1996 AraC-family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75365.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003313" + /translation="MDLTNASNFEHISFNDITFPFNCFYIKNSNTLPHWHNHFEMVFS + QKGSCMVYINGSSFLVSENQLIIIPPGSLHSIFPQGSCSYCAIVAGESLFEGLVADPH + ISEVLTPFMSIGFYPPLHLSEKDRVFKKCFLLVHELQRENDQKRNGYGARIKSQMIIL + FSVLQESLPSEFFKKNKLPDSTRLIKYSLDYLRIHYSERITVNDMSVYCHLSIQHFSR + LFKACTGKTFVEYLTLFRLEKARKILIGTDIPITQIPDLVGFCNSNYFCRLYKKYYGH + PPSKDRIKPSEGG" + gene 1246895..1249270 + /locus_tag="Ccel_1004" + CDS 1246895..1249270 + /locus_tag="Ccel_1004" + /inference="protein motif:PFAM:PF01055" + /note="PFAM: glycoside hydrolase family 31; + KEGG: bvu:BVU_0491 alpha-glycosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 31" + /protein_id="ACL75366.1" + /db_xref="InterPro:IPR000322" + /translation="MLEAIKPKQAKVTEVQRSEGALVLNTENGLLKIEPVNANIIRVV + YTLEDKFSAVRGLGIEPQKVFEGWEFKENEQTVMLDTGELQLYIRKSDSRMTYFDGKG + RRLTGEPEKNGKELVPFDSFKTVLDDTAVVEKIETPDGIKEVVLDSKKKYDRQLYHTR + LNFEWDKDEALYGMGQNEEGYLNLRGTRQYIHQANMKIAMPFLMSTNGYGILLDTYAP + VIFNDNAFGSYLYGEASAELDYYFIRGESFDQIIGGYRQLTGRASMLPLWAFGFMQSQ + ERYETQQEIIDTVKRYRELGVPLDGIVLDWQSWEEGMWGQKTFDTERFPDAKNMMEQV + HELGAHLMISIWPNMVEHCENYKEMKANNGLFQRSEIYNAFSSEARKLYWKQAKEGLF + SKGVDAWWCDSSEPFTPEWNNPVKPEPDQNLTAFHNTCRTYMDEVYTNAYPYMHAKTI + YEGQRETDGQKRVVNLTRSGYTGIQKYGTILWSGDTSAKWSTLKNQIAAGLNYCASGL + PYWTMDIGAFFVKQGHMWFWDGDYEGGCSDLGYRELYTRWYQLGAFLPVFRSHGTDCR + REIWNYGKKGEFFYDAIEKITHLRYQLMPYIYSLAGMVSQKHGTILRLLAFDFINDAK + VYDIDDQFMFGPSLMVCPVTAPMYYEADSKPIEGVAKTRKVYLPAGSDWYDFWTEKRF + KGGQSIEAEAPIDRIPIYVKAGSILPMSEQIQHTGQMKDDCFMLVVYPGEDGSFTLYQ + DERNGYGYEEGKFTTTELTWSDSEKKLTIHPHKGEYPSMPEKVTFLKRIVG" + gene 1249461..1250471 + /locus_tag="Ccel_1005" + CDS 1249461..1250471 + /locus_tag="Ccel_1005" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: regulatory protein LacI; periplasmic binding + protein/LacI transcriptional regulator; + KEGG: csc:Csac_1338 alanine racemase" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LacI family" + /protein_id="ACL75367.1" + /db_xref="InterPro:IPR000843" + /db_xref="InterPro:IPR001761" + /translation="MSVTIKDVASKSGLSIATISKYINGGNVLEENRKIIDKVIKELG + FEVNEIARGLKTSKTKTIGLLIPSLENIFFTSIVSNIESVLIKSGYSTIICDYKEDKD + LEKQKLDFLLKKMVDGIITMPMGNDSEAIKSVIKRNIPVVLIDRALRDIDCDTVLVDN + LNAAYNAIEQLIILGHKRIGIICGPDEIYTAQERLKGYERVHEDYNMSIDSSLVKKGD + YQVESGYRLLSELIKMEEPPTAILVTNYEMTLGALMAVNEGNVKIPDDISFIGFDNLQ + LSKVVKPPLSIVIQPVQQIGEVAANTILKRLKGDTSNFPSMIRLKTELIMKESVQKLE + TN" + gene 1250623..1252134 + /locus_tag="Ccel_1006" + CDS 1250623..1252134 + /locus_tag="Ccel_1006" + /inference="protein motif:PFAM:PF00370" + /note="PFAM: carbohydrate kinase FGGY; + KEGG: mta:Moth_2025 xylulokinase" + /codon_start=1 + /transl_table=11 + /product="carbohydrate kinase FGGY" + /protein_id="ACL75368.1" + /db_xref="InterPro:IPR000577" + /translation="MEKLLLGIDIGTSACKVAIFDLQGMVIAQSTKEYKVYYPAPGYV + EQNPNEWWESICAATNEVISKAKIDAKQISGIGIDGQSWSAIPVDKCGRVLHNTPIWM + DTRAADLCRETVQRVGFDKIFKLSGNSFEPSYSTPKFIWFKKNMPEIYNSTYKFLQSN + SFVAFKLTGKMTQDLSQGYGIHSFNMNEGKWDDDFCEELGFDREKLPEIFQCHEVIGE + VTAEAAASTGLAIGTPVVAGGLDASCGTLGAGVIKVGQTQEQGGQAGGMSICLETAVA + HPKLILSYHVVPNLWLLQGGTVGGGGAIKWFRQELGAFEDSVAKEAGTSPFKVMDDEA + EKIPAGSDGLIFLPYMAGERSPLWDKNAKGVFFGLGYDKTRAHMIRSVMEGCALALQH + NLKTAEEAGVAVQELVAMGGAANSRLWTQMKADVTGRVIKVPTSDTATTLGAAILAGV + GTGLYKSFEQAVNDTIVITRTHEPNMKAHEAYKRNYEIYIELYEKLKDTMQKI" + gene 1252161..1253207 + /locus_tag="Ccel_1007" + CDS 1252161..1253207 + /locus_tag="Ccel_1007" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: cbl:CLK_2861 putative L-iditol 2-dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL75369.1" + /db_xref="InterPro:IPR002328" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MKAGVLHARDDLRYEEILTPVPVKGEVLVRVKATGICGSDIPRV + LGDGAHFFPIVLGHEFSGEVAEIGEGVTSVAVGDRVAGVPLVPCLKCGDCQKGDYALC + KHYSFIGSRESGSFAEYVKMPERNVVKFNDSVSFEQGAFFEPATVALHGLLCADYRGG + EDVAILGGGTVGMFTAQWARIFGAKRVFVFDIDNDRLALAKKLGVDVTINTLDKDFKE + QVDKLTNKKGFGFVYETAGVDITMKLAFELAGNKSGVCFIGTPTKDLVFTPRLFENMN + RKEFKLTGSWMSYSAPFPGREWELTAHYFSTGALKFDDSFIFKKVPLSNIKEGFDMFK + VQGAVKGKVLIVNE" + gene 1253224..1254540 + /locus_tag="Ccel_1008" + CDS 1253224..1254540 + /locus_tag="Ccel_1008" + /inference="protein motif:PFAM:PF08013" + /note="PFAM: D-tagatose-bisphosphate aldolase class II + accessory protein AgaZ; + KEGG: sed:SeD_A3612 D-tagatose-bisphosphate aldolase, + class II, non-catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="D-tagatose-bisphosphate aldolase class II + accessory protein AgaZ" + /protein_id="ACL75370.1" + /db_xref="InterPro:IPR012062" + /translation="MASLHPLKDLVLKQKQGIPVGIYSACSANEYVIEAAMERALKTG + ETVLIEATANQVNQFGGYTGMKPEDFKEFVFKIAQKVQFSTENLILGGDHLGPLTWKN + ENSDTAMEKSCELIRQYVLAGFTKIHIDTSMHLADDNINEKLDTGIIAERGAALCKVA + EDAYAELLKRDKNALQPVYVVGSEVPIPGGSQEEEEGIQVTKVSDFEATVETFRQAFF + KLGLQKAWENVIAVVVQPGVEFGDETIHEYNREAAKELCQALKKYPTLVFEGHSTDYQ + TPTALKEMVEDGIAILKVGPALTFALREGLFALSMIEEELFKYEPEIHLSNLINVFDE + AMLQNPDNWKKHYHGSGSKIRFARRYSFSDRCRYYLPDVNVQKSVTRLLQNLKTVTIP + LSLLSEYMPIQYRKVRNGELSNDPESLLKDRVVNCIDDYLYATKVK" + gene 1254633..1255646 + /locus_tag="Ccel_1009" + CDS 1254633..1255646 + /locus_tag="Ccel_1009" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: sus:Acid_2860 aldehyde reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL75371.1" + /db_xref="InterPro:IPR001395" + /translation="MSNDIINPDLVPQRILRGGDKMPAIGMGTFGSDRFSAEDIAAAV + KGAAEVGFRLFDCAAVYGNEHLIGEVFEDIMKSGIKREELFITSKVWNDMHGKGDVML + SCAKTLKDLRLDYIDLYFVHWPFRNFHPKGAPPDYHNKDARPFSIEQYMETWYQMERL + QKAGYVKHIGASNMTIPKLKELIKYATIMPSAIEMELHPCFQQPELFKFVLDHGIQPI + GFCPIGSPTRPDRDKTSEDYIDIEDPVIVEIAKAHNVHPAVICIKWAVQRGQTPIPFS + IYRNEYASNLRCAVEDPLTEEEMKKIEGVDKNCRLIKGQVFLWEGAKDWTDLWDVNGE + ITK" + gene 1255684..1256115 + /locus_tag="Ccel_1010" + CDS 1255684..1256115 + /locus_tag="Ccel_1010" + /inference="protein motif:PFAM:PF05025" + /note="PFAM: RbsD or FucU transport; + KEGG: cpf:CPF_1050 fucose operon protein FucU" + /codon_start=1 + /transl_table=11 + /product="RbsD or FucU transport" + /protein_id="ACL75372.1" + /db_xref="InterPro:IPR007721" + /translation="MLKGIPSILTPELLKTLMEMGHSDEIVIADGNFPSGTFGKKVIR + LDGHGVPEVLDAILKFFPLDPYVEKPVALMEVVPGDTVETPIWDVYKEIINRHEPQNN + KIENIERFAFYERTKSAYAVIATSEAALYANIIIKKGVVVE" + gene complement(1256230..1257645) + /locus_tag="Ccel_1011" + CDS complement(1256230..1257645) + /locus_tag="Ccel_1011" + /inference="protein motif:PFAM:PF04616" + /note="PFAM: glycoside hydrolase family 43; + KEGG: cpy:Cphy_0531 alpha-N-arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 43" + /protein_id="ACL75373.1" + /db_xref="InterPro:IPR006710" + /translation="MKKQGFNPYLPSWEYIPDGEPYVFNNRVYVYGSHDRFNGYVYCL + NDYVCWSAPVDDLGNWRYEGVIYKKTDDPLNPDGSMCLYAPDVTVGPDGRYYLYYVLD + KLPIVSVAVCDTPAGKYEFYGYVHYSDGTRLGERADDQPQFDPGVLTEGDRTYLYTGF + CAVGDKSRKGAMATVLGPDMLTIVEEPVFIAPSQPYSKGSGYEGHEFFEAPSIRKNGD + TYYFIYSSVVFHELCYATSKHPTKGFEYKGVIVSNSDLHIDTYKPAQKPMFYGANNHG + SIVEINGKWYIFYHRHTNGTNFSRQACCEQIEILEDGTIPQVEMTSCGCNGGPLEGRG + EYAAYLACNLFCEEESLYTDWTASWMNNQFPKITQDGRDGDEEIGYIANMKASATAGF + KYFDCKGIKKVKIKVRGYCQGDFEVKTAWDGPALGKISVGFTNVWKEYSADIVIPDGV + QALYFTYTGQGSASLASFTLE" + gene complement(1257836..1258660) + /locus_tag="Ccel_1012" + CDS complement(1257836..1258660) + /locus_tag="Ccel_1012" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: cpy:Cphy_1546 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75374.1" + /db_xref="InterPro:IPR000005" + /translation="METEKDVVYRCIGSDLTNGILACGFMPKATTEKSQYNFMIDYYS + GFMLLSGSGRYYTPDKEMIPIQAGDFVQRIPGVCHSTEITPDGNWVEFFISFGRTTYN + YLCSLNLLSADAPVIHSQYDENIFQQFSRFLHQLKTAGDTELPFLSLKAQEIVLSIVN + RPAKTFPADSVRGAIEEACRLLSGDIHRAVSLEEVAAALHMSYENFRKKFREYVGVSP + LQYRIEQKMKHAKLLLLSGVSIKETAQLTGYSDAYSFTKQFTNSVGISPGRYKKMN" + gene 1258840..1261941 + /locus_tag="Ccel_1013" + CDS 1258840..1261941 + /locus_tag="Ccel_1013" + /inference="protein motif:PFAM:PF02836" + /note="PFAM: glycoside hydrolase family 42 domain 5 loop + region; glycoside hydrolase family 2 immunoglobulin domain + protein beta-sandwich; glycoside hydrolase family 2 TIM + barrel; glycoside hydrolase family 2 sugar binding; + KEGG: pin:Ping_2019 beta-D-galactosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 2 TIM barrel" + /protein_id="ACL75375.1" + /db_xref="InterPro:IPR004199" + /db_xref="InterPro:IPR006101" + /db_xref="InterPro:IPR006102" + /db_xref="InterPro:IPR006103" + /db_xref="InterPro:IPR006104" + /translation="MSREWENQYITQINRYPMHSPYGAYESVEQAMSCNRWTSKYVKS + LSGIWKFKLAQNPQQAPENFYALNYDVSDWDDIPVPSNWELHGYGKPVYTNIIYPFKR + EGVGSHYEIEVAEGQVELNAPLVPEKNLTGCYRTDFEVPDYFEGKDVFIEFGGVESCF + YLWVNGTEIGFSKDSKLDASFDITHAVHSGKNELAVKVLQYCDASYLEDQDYWHLSGI + YRDVRIYAKNKQRLLDYKVETLFKDNNFKEAELRVMLQPNNRVRGYGESYVRLSLYNA + ENELVTAFQSQPYAKCGVYLESKFTAFPSAFVKNPHLWSAEEPYLYTLVLETVDKNGC + VTDIESTKVGFRKVEIGRDGVFYLNGRRLLVRGVNLHEFCPETGRYVSMEYMRQQILS + MKQMNFNAVRTSHYPHASEWYELCDQLGIYVVDEANLETHGFGGQLSSSAEWTAAYLE + RATRMVLRDKNHPSIIIWSLGNESGAGANHAAMYGWIKEYDKTRYVQYESCNPESNIT + DIICAMYPAKDWVEQKMAEHDDLRPFIMCEYAYAKSNSNGNFKLYWDLVEKYPRFQGG + FIWDFQDKALVKQQENGTSRYVYAGAFNEEVVDPIEDMCLNGVVLPDLDWKPAAFEIR + NCQAPVTIFHDGSTYPEAGDYKIKNNYMFKDLSHLYLTWELLCDGKIVDRGVIKQYFT + APGQSDILEYALKPEKISGEAFVNITVSLNEDVPYAKKGHVIYAYQIPLQESVLKMQK + VCINHNKLTMHETAGEILILGENTEVRFDKESCIFTKAVFNGIESFWGGRDNFYRAST + GIDEGCRNPGGNYSTDWKDWGLNDLKIKDIKVDTAVSESQIFIFTNVSYNDDKLIVST + QYRIGSRGMEVDKTVINNCPGETIPRIGFSLMLPEDKQQITWYGRGPWENYADRKEAA + LIGCYSSTVPEQYTHYVKPVECGGKEDVRYIIVQDKGGHGLRVSGTVPFHFDIHDYSV + EACDNAMYEHELIKDKYVHLNIDHLHAGLGGDNGWSKNIHTEYRIGKGCYHYQILIEV + VDN" + gene 1262279..1263250 + /locus_tag="Ccel_1014" + CDS 1262279..1263250 + /locus_tag="Ccel_1014" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_0393 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75376.1" + /db_xref="InterPro:IPR000515" + /translation="MQTTRGMDAPATKKATFRKSGSFLKHFKKTWQLYTLLLLPIIFL + AVFNYYPMYGAIIAFKDYNIRDGILGSPWADNYGFANFIRFFGNYNFIECLRNTLWIS + IYSIIVSFPCAIILAISLNYILNVRYKKAVQLISYFPYFISTIILVGMINILFNTKTG + AIGSIIYSLTGTNVLASASAFPSLYVWSGIWQSVGFNAIIYMAALSGVDMQLHEAATV + DGATILQRIRHIDLPAIIPTAVILLILNVGGILNIGYEKVLAMQNPNNLGASEIISTY + AYKIALVASIPDFAYSTAIGLFQSGVGLILLLLVNKISRKLTTESLW" + gene 1263306..1264196 + /locus_tag="Ccel_1015" + CDS 1263306..1264196 + /locus_tag="Ccel_1015" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: oih:OB3208 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75377.1" + /db_xref="InterPro:IPR000515" + /translation="MKTKYCLQDRIFNKVNHTLLAIFLLAVLYPFIYLISCSFSSGDA + LMTGKVKLLPVEPTLLGYKTVFAYRPIWSGYLNSLIYMVSGTIVSVVLTIMASYPLSR + DDLKGKKFFMGYFLFTMMFNGGLVPTYMLVKQLHMIDTIWAIILPTALSAYNVIVART + FYRQNIPLELLEASRLDGCDDFRFLLKIVIPLSKPIIAVISLWVAVALWNSYFSALIY + LNSEEKYPLQLVLRGILIMGSADLSQSGVDPEIRLRNQYLGEMLKYGTIVVSSLPLMI + LYPFVQKYFVKGVMIGSVKG" + gene 1264277..1266034 + /locus_tag="Ccel_1016" + CDS 1264277..1266034 + /locus_tag="Ccel_1016" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cpy:Cphy_2193 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75378.1" + /db_xref="InterPro:IPR006059" + /translation="MKKFISKAIICATVTALLLTGCGSGTNTESTASSSAGNSSVQAQ + KSDISFPLKEKATLTAFVMTPYSGENGDYTNNYVTNYLEEKQNIKIDFKYSVTGDDGK + TKLNLLMASGEKLPDIFLSTKWSKAETMLYGKQGLIIPLNDYLKDAPNWNELNRVSPL + RLGDITMPDGNIYCYGDDNECFHCMFQSRMWIYKPWVDKLMGGKMPSTTDELYTFLKA + VKEKDPNGNGKADEIPFTGNIAAGGWATDPTTFITNAFIQNNNILSNTNPVVGAGFVV + NNGKVEYQFTKDEYKDALVYLNKLYKEGLLDSQTFTQNADQQKATVQGTPQLAAMAPG + GWWPCNTDELLKEQEGSYQDWVVLEPIKGPNGVQLSAYYPTNYFQSNYGLVSADCKNP + ELAVKFFDLLASQEMTLITQNGPQGIAWDYVTEGTSIAGGEAKWKKIPAKKLRSSQIP + DYSDEGLDFVKYVWDPDAVMTHNTNEFRLSQYCANPETSVEALLYQCGKAYSKYKPDD + ATMLPNLAYSEEDAKKIADYTVSIGKFVNQATVQFITGDLDINTWQNYVDKINSMDLK + GYLAIQQNAYDQYAKSLNK" + gene 1266173..1267732 + /locus_tag="Ccel_1017" + CDS 1266173..1267732 + /locus_tag="Ccel_1017" + /inference="protein motif:COG:COG0785" + /note="KEGG: cpy:Cphy_2189 glutaredoxin 2" + /codon_start=1 + /transl_table=11 + /product="Cytochrome c biogenesis protein-like protein" + /protein_id="ACL75379.1" + /translation="MNKKNIYILLCFLSILILFGCSVKSEPVKLYYYYFNACGACNES + EEFYNMADSVLEGIDKSEYEIITVNTFKESMPESLKLFLEANSIKTEDVSYPMLTSGN + NYITGLEDIEKNMRELLLSSINKKSFNQGQGGRESTGNSYKQEGAYKSGPSKADKNSS + YFVYFYTSSCRDCKNTENFLKTLSSGYKLNVGEKDVNSRLVIDHKNITQENNLALLQS + LFEYYDVPKDKREVPVMFYSKGYINGYDNIKKNIEKIIIKGEALNFDYDRLSRENNIK + NLTPENIPGIFLTGLINGFNPCSISMLFLLLSLVISKKSNILKIGFSYVAGKMAAYFS + FGIAAYNIITIVDSTAFRNVQYGISIFMIIVSLILALLNFRDAYWARKEMYKNVKMQL + PGSLRKYNHRIITFFAEKADSGWTVFFIFILGVIISLGEFLCTGQIYVATIVYLAQNT + SGLAGITVFSFVSYVLAASLPLIILVVLINRTKKLLLISEFVRKYLPVIKVIFGVTFL + IFGLIFVTYII" + gene 1267784..1268098 + /locus_tag="Ccel_1018" + CDS 1267784..1268098 + /locus_tag="Ccel_1018" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_2188 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75380.1" + /translation="MFKKRKNKDPKIIVSIFNSDNELLFNGELNSVPIKETVIIKKSI + EFFDDHNPCYIHRGAVTVRLLSEIEAYLKMHREEDFTVGRHNGSVVDYIDIDGIHRME + IS" + gene 1268238..1269521 + /locus_tag="Ccel_1019" + CDS 1268238..1269521 + /locus_tag="Ccel_1019" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75381.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 1269972..1272251 + /locus_tag="Ccel_1020" + CDS 1269972..1272251 + /locus_tag="Ccel_1020" + /inference="similar to AA sequence:KEGG:Cphy_0874" + /note="KEGG: cpy:Cphy_0874 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75382.1" + /translation="MKQKLWYKSPAKEWNEALPIGNGRLGAMVYGCVKNENIQLNEDS + IWYGDPIDRNNPDALANLAEIRNFLSDGRIKEAEKLAVLSLSGVPESQRPYQTLGNLK + LNFEIDESDIRDYSRELDIENACASVKFVSKGVMYTREYFASAVDQVIVVRLFADAPG + KISFTANMRRGRFLDNSGAIDGKTIGMFASCGSDKGVRFCSMVRAVSEGGKVNTIGEN + LIVEEADAVTLLISTATSFYHKEYETQCLKYLDGVEEKTYTELMSNHIEDYSQLYGRV + ELEIGNAEEHDKIQSLDTAERLERLESGKPDHQLECLYFSFGRYLLISCSRPGSLPAN + LQGIWNQDILPAWDSKYTININTEMNYWPAETCNLSECHFPLFDHIERMRAPGRRTAR + VMYGCSGFVAHHNTDIWGDTAPQDIYIPATYWPMGAAWLSLHLWEHYEFGLDKEFLKD + AYPVMKEAAQFFLDFLIEDSKGRLVTSPSVSPENTYILENGEKGCLCIGPSMDSQILY + ALFSGCIEASNILDTDISFAEKLIKVRDSLPKPQIGRYGQIQEWSEDYEEEEPGHRHI + SHLFGLHPGKQFSTRKTPELATAARKTLERRLANGGGHTGWSRAWIINMWARLKDGEK + AYENVVDLLKKSTLPNLFDNHPPFQIDGNFGGAAGIAEMLLQSHEGGIEFLPALPGAW + SEGRVKGLVARGNFEVEMEWKDGKLNRATILSRSGGNCKIFTSLKYRVTSDGKPVDTV + QDGQVMSFTTTEGKKYVIE" + gene 1272471..1273295 + /locus_tag="Ccel_1021" + CDS 1272471..1273295 + /locus_tag="Ccel_1021" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_2415 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75383.1" + /translation="MKIIELCDLLEIQNEVQEKVIEYEKCIDFKGMEQELEQMKHPER + WEDALGSLKGLLGPDEDGMKILTCQLRCVCDSYAKYEELGISKEIFIATMKFFTRFLQ + DHKDRHGSYCYIWAWWTVRQISMVQYRIGELEYEMRMENDKPLIDIHIPADADMTTGK + LRKSYVEALNFFKKYYPNYTGADMVCSSWLLVPTLRNVLSRDSRILKFQKSFKIKHIE + EDRLDFMDWIYGSREIPLEELPENTSLQRNLKPYLLNKGKIGWACGKLISNPFIEV" + gene 1273613..1275052 + /locus_tag="Ccel_1022" + CDS 1273613..1275052 + /locus_tag="Ccel_1022" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: ade:Adeh_0552 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL75384.1" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MTTQEYQGNDRLLLGMVLGVITFWLFAQTTLNIAPTMRTDLGID + VNNSNIAVSITALFSGIFIVVFGDLGDRFGRLKMTKIGIILSILGSLLIAASPRGTII + FLMTGRIIQGLSAACIMPSTLALIKAYYQGASRQRAISFWSIGSWGGSGFCSLFGGIV + ASTIGWRWIFWFSILIAIVSYLLIRETPESKKSVTDKVQGFDFSGVLTFMIGMVAINI + VIGLGARIGWSSSVILGLAVLAVAALYAFFRIERSKENRFIDFNLFSNKTYTGATISN + FLLNGAAGTIIVALTVVQLGAGLTSFQAGLLTIGYLVAILLTIRVGEKLLQRWGARKP + MVLGCIITGAGILLTSFTFVLAQQYMIIATIGFTLFGIGLGFYATPSTDAALSTIPTE + KAGSASGIYKMASSLGAALGVAISAALFTGLSDRDVHFTQGIFWGRTSNISIRYAAAI + ALLFNLGMLLVAIISIMMTVPAGKSETIE" + gene 1275099..1276265 + /locus_tag="Ccel_1023" + CDS 1275099..1276265 + /locus_tag="Ccel_1023" + /inference="protein motif:TFAM:TIGR01891" + /note="TIGRFAM: amidohydrolase; + PFAM: peptidase M20; peptidase dimerisation domain + protein; + KEGG: cdf:CD1086 putative peptidase" + /codon_start=1 + /transl_table=11 + /product="amidohydrolase" + /protein_id="ACL75385.1" + /db_xref="InterPro:IPR002933" + /db_xref="InterPro:IPR010168" + /db_xref="InterPro:IPR011650" + /translation="MLSILDKAKSIEEYIVNFRRSLHKEPELSGQEFKTQEKIMVELD + KLGIDYRKAGNSSLIAELKGGKSGKTIALRGDIDALPIQEETDIEFKSVIPGVMHACG + HDAHAAMLLGAAKILSEMKDELSGEVRFFFQEEEETFSGAKRIIEAGGMDGVDACFGM + HVLPVIETGNVNVVSGYRLSGCDTIYVKFQGISGHGSAPHLAKDTIHPACIFVTDLQG + IITKNVNPQEPVILSVGKFNGGTKANIISKYTDIDISMRYFNTNVRKIVHEAIKRHAK + AIADAYEIKVEVIIEESTLSLYNDEDLSVLAEKSATKVFGEGHILPVSKQMASEDMSY + YFEKAKGVYAILGYKNEDKGCIYPPHHEKFKLDEDCLKYGTALHVQFALDFLNN" + gene 1276298..1276909 + /locus_tag="Ccel_1024" + CDS 1276298..1276909 + /locus_tag="Ccel_1024" + /inference="protein motif:PFAM:PF03458" + /note="PFAM: protein of unknown function UPF0126; + KEGG: btl:BALH_4926 permease" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0126" + /protein_id="ACL75386.1" + /db_xref="InterPro:IPR005115" + /translation="MFLLNYFEIIGTVAFAISGAVIGIEKKLDIFGITFLAIVTSVGG + GIFRDIIIGNTPPTAFVNPTSSIISIFTALVVFFFYEKKSKFEKIIIISDALGLGVFT + AIGCRTAIIRGADNAIFVIAMGLSTGVGGGMIRDILVENVPFVLKREIYALASIIGAL + CFFFFYSYFPEIISLYLCCAIIFIIRITSVKYNINLPAFKNWK" + gene 1277219..1278553 + /locus_tag="Ccel_1025" + CDS 1277219..1278553 + /locus_tag="Ccel_1025" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cbe:Cbei_4680 extracellular solute-binding protein, + family 1" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75387.1" + /db_xref="InterPro:IPR001952" + /db_xref="InterPro:IPR006059" + /translation="MKMHKILVSTILSVAMLLSITACGSNDAGSGDKAQSTGTTSADT + NKENKGTTKLTMWHIQTQENVADIIDASMDRFAKDNPGFEMEAVPMQNDPYKTKLITA + MSANELPDVFIHWTGGPMISYIDSGAVYDITEYMNKDNYKDKFLDASIQQATYKDSIW + AVPVENVSPALMFYNKKLFADNGIEVPKTLDEFEKVSDTFVQKGIIPVSLANKTKWPG + SIVYGYVLDRIAGPNAFADANNGVTQFDTPDFLAAATKIQTWAKKGYFGKDFNGMDYD + AGQDRQLFYNGKAAMYIMGGWFLFTAKGENPEFVENVGVMQFPANPDSKGKASEYIGT + MGDNFYSVSKNSKNPEMAFKAITYMLDDQAVKERIESGKIPPLKGITLTDEISKIVSD + SASSATSMQLWLDQYLAPNDAELHKDQLQKLLAGSITPEQYNKSMTDGVKNK" + gene 1278646..1279548 + /locus_tag="Ccel_1026" + CDS 1278646..1279548 + /locus_tag="Ccel_1026" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cbe:Cbei_4679 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75388.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR001951" + /translation="MGVKRRTLENERKRSTAIVATLFLLPVAFFLIVYIFRSVIYTFK + LSTLDWNGVSQSTDYIGIGNWLTLIKDETFFTTIKNNLIMVVACLIIQMPIALVLAYL + LDWTNSKAKFLKSLYFLPLLMSSVALGFLFKQLLDSNYGLAGAVMSFFMDSPFNLLGN + EKTAIWAVIGVICWQYIPFYMVYYFAGLTSISPELYEAAVIDGAKRHQYIFRISLPML + SDTIKAATIMCLVGSLKYFDLIYVMTEGGPSGSTELMATYMYKNAFTQMKMGYGSTIA + AAMFIIITTISLLTFKMMNIKEEK" + gene 1279551..1280390 + /locus_tag="Ccel_1027" + CDS 1279551..1280390 + /locus_tag="Ccel_1027" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cbe:Cbei_4678 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75389.1" + /db_xref="InterPro:IPR000515" + /translation="MIKIKRFSFAAVVAIIFAGVWALVTTFPFLFMAFTSFKQTNELF + QGPTIFALPKSLYLDNYTEILTGNFFIYFKNSILVCAIGLILLLASSAMASYVFSRLK + FKINKVLFAIVIACMAIPIHATLIPVFLLTKDVKLYDNIIGLIGPYVAFNIPVSVFIL + TGFMKGIPVELEQAADVDGAGKVRTFLEIILPLSMPGLATLAIYNGINMWNEFVYAFV + LTSSVKSRTLPLAIWEYQGQYGVDIPMVMTILTLSALPMIIVFIFCQEKLIKGMMAGA + VKG" + gene 1280425..1281096 + /locus_tag="Ccel_1028" + CDS 1280425..1281096 + /locus_tag="Ccel_1028" + /inference="protein motif:TFAM:TIGR00126" + /note="TIGRFAM: deoxyribose-phosphate aldolase; + PFAM: deoxyribose-phosphate + aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; + KEGG: cbe:Cbei_4143 deoxyribose-phosphate aldolase" + /codon_start=1 + /transl_table=11 + /product="deoxyribose-phosphate aldolase" + /protein_id="ACL75390.1" + /db_xref="InterPro:IPR002915" + /db_xref="InterPro:IPR011343" + /translation="MVNDKKVFAKYFDHTILKADATEEQVINLCNEALEYEFASICVN + SCHTKLVSDKLKGSNVKTCVVVGFPLGAMSPRSKAFETKDAVESGAQEIDMVINVGAL + KAKNYDYVENDIKGVVEAAGKKAIVKVIIETCLLTDDEKVKACELSKKAGADFVKTST + GFSTGGATEEDVALMRKTVGESVEVKASGGIRDYETAVKMIKAGASRIGASASVGIVK + NSQKL" + gene 1281110..1282180 + /locus_tag="Ccel_1029" + CDS 1281110..1282180 + /locus_tag="Ccel_1029" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: cbl:CLK_2861 putative L-iditol 2-dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL75391.1" + /db_xref="InterPro:IPR002328" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MSNKMRAVQLFAPGDVRCELIDIPVISADNQVIIKVEACGVCGS + DIPRVMSKGAYRYPIVIGHEFSGEVVEVGTKVKNAKVGDRVTAMPLVNCKECDYCKIG + QAITCDNYDYYGSRIDGAMAEYIVVSEENIIHIPDNVSYYEAAMTDPVSVALHAVRKA + EIEAGQTAVVFGLGAIGFITIQWLKHMGCHKVIAVDIIDEKLDMAKKLGADLCINGMK + CDVVKTIMEYTNNKGADSAIELAGSTITQVQAIDSVRKLGTVVFCGIAYNDLVIPNKS + LGKILRGELKIKGSWNSSIAPLPINEWKSALMFIEEGKIKLNELITHVVCLEDCQSAF + EMMYNKKEMFTKVIFDPNKKQI" + gene 1282193..1283233 + /locus_tag="Ccel_1030" + CDS 1282193..1283233 + /locus_tag="Ccel_1030" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: pac:PPA0918 putative zinc-binding sorbitol + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL75392.1" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MLSYVYHTDKTLELKDVPKPMLNGEGALIKTIACSICGTDVRTH + RFGSTKIDEGRIIGHEVVGEIIELSESVKDFEIGEHVAVAPAIGCGICYSCKNGKTNM + CEDLKTIGFQYDGGFADYMVIPLQAFKMGNVYKLPEVKDDSVFTLSEPLACAINAQSY + LNIKQGEDVVIFGSGIIGCMHAELALYSGAKNVIIIETSFERIKQASKLLKDVIFINS + AETDIFAEVSRLTDGKGADVAIIACSVGSAQADGMKILAKCGRISLFGGLSGNSTGFI + DSNLIHYREISVFGVHASTPEQNKQAMEMIHSGKINVEKYITERYPLKDIEKAFKDIE + DGRVMKAVIVNK" + gene 1283266..1284771 + /locus_tag="Ccel_1031" + CDS 1283266..1284771 + /locus_tag="Ccel_1031" + /inference="protein motif:TFAM:TIGR01311" + /note="TIGRFAM: glycerol kinase; + PFAM: carbohydrate kinase FGGY; + KEGG: chy:CHY_1839 glycerol kinase" + /codon_start=1 + /transl_table=11 + /product="glycerol kinase" + /protein_id="ACL75393.1" + /db_xref="InterPro:IPR000577" + /db_xref="InterPro:IPR005999" + /translation="MSKKYILAIDQGTTSTKVLVVNHDSKIIDRASKDITQFYPQSGW + VEHDADEIWETVMDCCNEIFARNIVKPEEIAAIGITDQRESTILWDRDSGRPVYNAIC + WQSRQTASICERMKKQEGLEELINEKTGLRIDPYFSASKIKFILENVPGVQERVNEGK + ILMGTIDSWIMWNLSGKKSHVIDYTNASRTLLLNIHTLQWDDELIEKIGVPKQILPEL + KPSSCDALAFTAPDVFFGQQIPISGDAGDQHAATIGQACFEPGMAKNTYGTSMALFMN + IGDKPLKSNYGLTTDLGWVIDGKVQYAFEGVVFVGGAVVQWLRDGLGIIKNARECDIL + AEKVQDTGGVYIVPAFAGMCAPYWDAYARGTIIGLTRGTTKEHICRAALESMGYQTRD + VIDAMVADTGKELKSLRVDGGATKSEFLLQFQADILGIPVELPEITDMAALGAAYLAG + LGIGFWKDVSELRQHWKIKKVYYPRMSKEERDSLYEGWKKAVGRSLDWAEK" + gene 1284805..1285509 + /locus_tag="Ccel_1032" + CDS 1284805..1285509 + /locus_tag="Ccel_1032" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + KEGG: dth:DICTH_1536 oxidoreductase, short chain + dehydrogenase/reductase family" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75394.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /translation="MKKVLITGVSGGLGTCLANDFIKKNYYVYGYDKTYNEKISVLET + DYPNQFKFFNTDVSLDSAVEETAKKIKQNSDTLDILINAAAILPTNSANILEDFEISQ + SLEVFSTNSLGPLRVVKSLLPLIRKGEDKLIINISSEAGSLATHCNYVNRYDYCMSKA + ALNMQSVILQRYLKPDGIKVLAVHPGWVRTEMGGLDAPILPSESAAGIVTLAEKYIHK + TGEGIFFDYDGNTREW" + gene 1285554..1286951 + /locus_tag="Ccel_1033" + CDS 1285554..1286951 + /locus_tag="Ccel_1033" + /inference="protein motif:PFAM:PF02610" + /note="PFAM: L-arabinose isomerase; + KEGG: gfo:GFO_0699 L-arabinose isomerase" + /codon_start=1 + /transl_table=11 + /product="L-arabinose isomerase" + /protein_id="ACL75395.1" + /db_xref="InterPro:IPR003762" + /translation="MITKQKPRIGFLGLMQGLYDESQPELPKMQEAFAREVVEQLKDV + ADIDFPGPAKEREDIERYVKYFNDKEYDGIMIVNLLYSPGNRLIQAMKNNNLPILLAN + IQPLPDVTSNWDWILCTTNQGIHGIQDTSNVLMRCGIKPAIITDDWKAESFKAYFEDW + ALAANTHNRLKKTKVAIFGRMHNMGDILGDDAALCRKFGVEANHVTIGPVYYNMEGLS + DKEVDAQIEEDKKNFKIDPNLPEESHRYAARMQLAFEKFLNDNGYEGFSQFFNIYKED + GRFKQIPILAGSSLLAKGYGYSAEGDTNVLLMTVIGHMMIGDPHFTEMYSLDFGKDSA + MLSHMGEGNWKVARKDRGVTLIDRPLDIGGLGNPPTPKFNVEPGTATLVSLVAVEGEK + YQLIVSKGTILDTEDLPDVPMNHAFFRPDSGIKKAMDEWLANGGTHHEVLFLGDFRRR + FELLCKILDIKYIEV" + gene 1287008..1287955 + /locus_tag="Ccel_1034" + CDS 1287008..1287955 + /locus_tag="Ccel_1034" + /inference="protein motif:PFAM:PF04198" + /note="PFAM: putative sugar-binding domain protein; + KEGG: afl:Aflv_2782 transcriptional regulator of + deoxyribonucleoside metabolism" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, DeoR family" + /protein_id="ACL75396.1" + /db_xref="InterPro:IPR007324" + /translation="MNDKYKLMVDVSKMYYYFGMNQKEIAEELGVSRGYVCQLMEQAR + KSGIIEFKIKDVAKEEKEIEYHLRSKFNLQKAIVVPTLPNADPNQLNPEVADTACKYL + DTIIESDMVIAFSWGWTIFQVSSNMVKHTDIKNVTSIPLSGGMTNLQKKIYVSEISTN + IAEAYNGTPLFIPLPAVLQNAQIKEALYSDTNVSDVLNKSKEADIALFTVGSFGEQNV + LYRGGYIDNKSMKTLVKKDAVGDLCAHFINEYGEICDKDLDERTVTINLNDFRKIKNK + VCIVTGSQKVKALLGALRKQYVDVLITDESTVNEMLKMI" + gene 1287970..1288356 + /locus_tag="Ccel_1035" + CDS 1287970..1288356 + /locus_tag="Ccel_1035" + /inference="protein motif:PFAM:PF00903" + /note="PFAM: Glyoxalase/bleomycin resistance + protein/dioxygenase; + KEGG: stl:stu1532 glyoxalase I/lactoylglutathione lyase" + /codon_start=1 + /transl_table=11 + /product="Glyoxalase/bleomycin resistance + protein/dioxygenase" + /protein_id="ACL75397.1" + /db_xref="InterPro:IPR004360" + /translation="MKLIGIDHITINCTDINASFSFYEEILSLKRLNDVDLGDHVLHY + YQLPNTKLELIEYKEPQRTIIAGNTDTGIYRHFAVGTDDLMEIKRRCDEKGYKINLQP + TYIPQIDKKVMLIVDPNGVEIEIIQL" + gene 1288460..1289965 + /locus_tag="Ccel_1036" + CDS 1288460..1289965 + /locus_tag="Ccel_1036" + /inference="protein motif:PFAM:PF06964" + /note="PFAM: alpha-L-arabinofuranosidase domain protein; + KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="alpha-L-arabinofuranosidase domain protein" + /protein_id="ACL75398.1" + /db_xref="InterPro:IPR010720" + /translation="MNKAKIVLDKDFIISKIDEKVFGSFVEPLGRCIYGGIYEPGHPA + ADEKGFRRDVLELTKPLNVTLNRFPGGNYVSTFRWEDGIGPKEKRPRRAEVAWQSIET + NQFGINEFADWSKLNGSDVMMTVNLATRGVLEAMDCVEYCNFKEGTYWSDLRISHGYK + EPHGYRYWCLTNEIDGVWQVGQKTGTDYGRIAREASKGMKLLDENIKTVLAGSSSPSQ + DSFPSFDAAALEESYEFIDYLSIHQYIGNAKNDTPNYLAKPLITDKYLKTAIATIDYI + KAKTKSKNKVNISFDEFNTWHSIAEEARFNNKWRIAPPLLEDEYTLEDALALGGMLLA + VLKNADRVEIACISELVNCISHIRTRNGGGAWVLPPYYTFLLFSKYGRGTSLVTSISS + PKYDSTDFTDVPYLDAAATMDDNGDVTIFAINRSTEETLPLETELRGFENYRVETHIV + LTSANPKDTNTEECPNYVTPKNNGDAQIDGNKVLANLPRLSWNVIRLQKVK" + gene 1290020..1290526 + /locus_tag="Ccel_1037" + CDS 1290020..1290526 + /locus_tag="Ccel_1037" + /inference="similar to AA sequence:KEGG:CD2121" + /note="KEGG: cdf:CD2121 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75399.1" + /translation="MSDYIHLPRKDFNDNMLTRIGDDWMLVTAGNEKEGCNTLTACWG + GVGNLWHRDAAFIFIRPTRYTYEFIEKNDMFSLTFFPSGYRKELSLLGSKSGRDGDKI + SEANLSVQYLDGVPTFEQGNLCIICKKMYYLDFEPDRIPQDVIKRFYPDGDFHRFYAG + EIIKIYTK" + gene 1290958..1293480 + /locus_tag="Ccel_1038" + CDS 1290958..1293480 + /locus_tag="Ccel_1038" + /inference="protein motif:TFAM:TIGR01494" + /note="TIGRFAM: ATPase, P-type (transporting), HAD + superfamily, subfamily IC; + PFAM: cation transporting ATPase domain protein; Haloacid + dehalogenase domain protein hydrolase; E1-E2 + ATPase-associated domain protein; + KEGG: cpy:Cphy_2132 ATPase, P-type (transporting), HAD + superfamily, subfamily IC" + /codon_start=1 + /transl_table=11 + /product="ATPase, P-type (transporting), HAD superfamily, + subfamily IC" + /protein_id="ACL75400.1" + /db_xref="InterPro:IPR000695" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR004014" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006068" + /db_xref="InterPro:IPR008250" + /translation="MTNKRQVMAGLTSVEAKRLQQQYGKNEFTPQKKDSFIRKVLHII + CEPMFLLLIVAAIIYFILGEPRDGAIMLIFVIGIISIDVIQEWKTDKTLNALKDLSAP + HITVIRDDKETVIASTDLVPGDLMMIYEGVKIPADGIVVKCNDLCVEESSLTGEAEGV + WKITSGNADSSNDYWRKDYCYAGTLVIQGTGTILVDKIGAETEYGKIGMNVAAAPNEP + SPLQKQTGKLVKTCAGIAGILFALVGVFTYFNIPDHTFADRVVESILSGITLAMAMIP + EEFPVILTVFLSMGAWRLAKKQSLVRKLPAVETLGSVSVLCVDKTGTITMNQMAVQEV + WSPDGNENTLIETMGLACESDAYDPMEKAMLAYCDNHGISKEDLFSSELISEYAFTNE + LKMMGHVWHRKNGIVIAAKGSPERILSICNLSDKDREITEQKVAEMSKEGLRVIAVAM + ALPESEENIPSSITECRLNLCGLIGLSDPPRESVKSDIAVCSKAGIRVVMITGDNGIT + ASSIARKIGMEHSDNIITGDMLNEMSDNELREAVKSVSIFSRVVPEHKMRIVKAFKEN + GEIVAMTGDGVNDAPALKYADIGIAMGKRGSEVSREAADLILMDDNFTTIIETVKDGR + RIYDNIRKAVGYVFTIHIPIAFTSLLGPILGIAPAALMLLPLHVVLLELLIDPTCSIV + LERQPAETDIMERRPRNPKDKLLNTRTLLKSVIQGLVVFAASFGTYYTVLCDDPASAT + IARAMGLAIIMFSNLFLVQVNSSDYDFAVQSIIRLSKDRVMWAVNIGTLLMLAIILYT + PLSGFLKLAPLTAGQFFGSAGIAAVAVFWYEIVKLIKRFRKK" + gene 1294109..1295347 + /locus_tag="Ccel_1039" + CDS 1294109..1295347 + /locus_tag="Ccel_1039" + /inference="protein motif:PFAM:PF00282" + /note="PFAM: Pyridoxal-dependent decarboxylase; + KEGG: mst:Msp_0329 MfnA" + /codon_start=1 + /transl_table=11 + /product="Pyridoxal-dependent decarboxylase" + /protein_id="ACL75401.1" + /db_xref="InterPro:IPR002129" + /translation="MEDQRWNFPRNGLSMDQIKEYMNPGRNYDCLDNGKVFLGYPQTT + PHPIAIKTYKNYLQYNDNHVGTFSNNNTDLNISRKMEKQFIEMLGDLYGDIEADGYVT + SGGTEGNIMGIWVGKYYLGGGETDNLCLIKTYLTHQSIDKACSLNNITNIIEIPYNQN + FEMDTNLLRNEIDFQIESGKNRIIIVATVGYTMTGTSDPIDEIDKIIQDYSRNKDVSF + YLHVDAAIGGLVYPFCKKEDFAFQYPSVKSLTVDPHKMGYVPFSAGVFLCRRNLQDCV + AIPIKYAKTVMDKTLVSSRSAAAAAACWTTFNYLGIAGFEKKIKKLISIKEYLVEKVL + ADKLAVLISDPGTNMVCLYFDSLAQGLLPEWIEKKYTLDGFLLKCKDEMIICYKVYIM + PHVTKRAILQFVDDIRALAC" + gene 1295415..1296497 + /locus_tag="Ccel_1040" + CDS 1295415..1296497 + /locus_tag="Ccel_1040" + /inference="protein motif:COG:COG0826" + /note="KEGG: sso:SSO1759 protease, putative" + /codon_start=1 + /transl_table=11 + /product="Collagenase and related protease-like protein" + /protein_id="ACL75402.1" + /translation="MPEKTGLSIPCQWDKDSLIEILNYGVSKEIDIKEVYGTASFENL + PHGRAFEVTKRIDKNDALEIKKIISEKGITFAYLINAPLELDSYEFLENELDWIVNDF + KADSITISSLKLMKFVRAKYPDLKINVSTIAGVKTVEDMKQYLPINPSKFITHHDINR + NYKDLEEIIEFLREKNIDFEVMLNESCLRRCARRDEHYSTLGKGCGDSEFHLWCNSLK + VSHPYQLIMCNFIRPEDLKVYEDKGIKLFKVTGRSKPLGWLQEVVRAYLNREYNGNLI + RLLGADPKLEAERWIYISNKALDNFLENYPKNGDVGEEIRYCKNIIFDLYSKNEFAIK + NDFIKPEIKDRQLSFKIEKDIYAWNY" + gene 1296521..1297603 + /locus_tag="Ccel_1041" + CDS 1296521..1297603 + /locus_tag="Ccel_1041" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mbn:Mboo_1451 GHMP kinase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75403.1" + /translation="MEINNFDFFKVGTVFNPVKCYKTPEAKGRRISIQYPSRLNAMAI + DPSKIVENKNMKYTPGEIVFSTQIFLEIEVKLLENEEIIVCNSVSDRKTVVEHSCKIM + KKALGYTGGFEVNVQSYHNLKHCGLGSTGCLQAGVAAAINHLFGSPIDANDLIRYLAQ + NYGEEIDGDPVHLNPVQCIGGSAASGLRQGGVLVIAGENTVIAAADISESYEVIIGIP + EDFDFVDSKAQFEEEKENLDKFLECGKCHKDEIAYNILHYFLPAMERENLKTMGDVIY + DYRYKKGSIQNCAYTYPGLVELMERLSFLKTEGYVDVLSISSVGPAVFAIAKDVSRCT + EAFKENSMRIIKTKINNCTYKVQCLE" + gene 1297609..1298697 + /locus_tag="Ccel_1042" + CDS 1297609..1298697 + /locus_tag="Ccel_1042" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aminotransferase class I and II; + KEGG: cdf:CD1549 putative histidinol-phosphate + aminotransferase" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class I and II" + /protein_id="ACL75404.1" + /db_xref="InterPro:IPR004839" + /translation="MNYMNAYEDLRNVPAYYDYSLSFNRDESILEILKNIQMHEVVEM + LNRYPQQSYFEFKELLGLSHPKMTVVLGSGSEDLIWRINNFILRNKKVGVILPTFYRI + YQTLQEPCFINIPYDIDNEVLDICSLRKAIDEGKYEAVWITNPNPITGKGFYASELLN + VIEANKDTLFIVDEASVDSVMDIDRFSMLNSGYYLKNLVVIKTFSKFYGLPGMRLGYV + AISDELADCLENWGQVFPVSSFSIYMAKKILEHKKIFMDIRKKINQNRDLMTSLLNSS + STVVPYKSLTNTLVIGGRSTQYNLWQILKGKGILSFSLDEEKGMLFSNCVRITIHSGK + ESFDYLYNGIKELLCELEGNNRVYSVNM" + gene 1298723..1299601 + /locus_tag="Ccel_1043" + CDS 1298723..1299601 + /locus_tag="Ccel_1043" + /inference="protein motif:PFAM:PF08282" + /note="PFAM: Haloacid dehalogenase domain protein + hydrolase type 3; + KEGG: cth:Cthe_1482 Cof-like hydrolase" + /codon_start=1 + /transl_table=11 + /product="Haloacid dehalogenase domain protein hydrolase + type 3" + /protein_id="ACL75405.1" + /db_xref="InterPro:IPR013200" + /translation="MNKYLYISDLDGTLLSSNACMLDESIYRLNRMICDGLMFTFVTA + RDWLSSREIMSEVNLTLPVSVCNGRAVVDFQTGKMQKGYYIKSDKVMKIIQTAYQYSL + FPNISVYHQGRIQTCYVAVHQRSNRDYYLNRLKMKESMTFQVPSINEAITENVISIAF + VDSRDKIRKFCAAFDYKNQESLSIHVYNDPFDKTIEIVDILSDTASKGVAASDIANLC + GIFAKEQIVSFGNDENDIELLKASGTGVAVGDNLGLLAEYTAICLNYQEGLSVLDFLE + QHFYNKNYERKVVIQK" + gene 1299598..1300284 + /locus_tag="Ccel_1044" + CDS 1299598..1300284 + /locus_tag="Ccel_1044" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: ctc:CTC01641 putative transcriptional regulatory + protein" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL75406.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MSKNTERALNYWNNCDIIHEFANAQVPQYWKEFFLEILLPQECS + VLDLGCGGGRNTQMLVSMGFNVRACDLHQGMVDATRQRIKPFTDGQDAEMIVRQGSML + RLPYEDNYFNIVLSNGIYHNASNVEEFETAIKETGRVLKEDGQLCLNVFTEEYVEANL + QKQQKPFLYITPDNLDMVLLPIDNILEILERYSFRPEGELVQYRSKVATGERSVLRGV + FRKNKSTRSI" + gene 1300307..1301557 + /locus_tag="Ccel_1045" + CDS 1300307..1301557 + /locus_tag="Ccel_1045" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; Protein of + unknown function UPF0004; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: fnu:FN0475 MiaB protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75407.1" + /db_xref="InterPro:IPR005839" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013848" + /translation="MSKKVRLICNLNCSRRQMDMVKLESYLSANGYEVVEDEKQADQI + VYTTCGFINETAQVAFNEIERLKSLPAELIVTGCLPDTDSETFNKIHSGKVVRNTELY + KFDDVFGGDTKFQDIPDAHDMPWGKGEYFCVEVSRGCPENCSYCATKWAVGKMKSKPI + QKCIEEIEEFKKSTFSKVVINGDNVGAYGLDIKETFGTLVSALPIEDEKYKAYIDSLH + PRWLLLYYDAVLAAISKNRFGMLVSAIQAGNERVLELMRRKADMKKLKEAFIEIKQKS + PEIVLGTEVIVGFPTESESDFIESVDFILSTKLDWGNIFAFSPKKGTEAAAIKGQVEE + AEKIRRINYLVEKLKENGYFIFKEEKSQAVIFSNADICINADKSPNPYWQTCFDTVCL + DRKKQNQIRSDLREGKIKVSEVSF" + gene 1301679..1303151 + /locus_tag="Ccel_1046" + CDS 1301679..1303151 + /locus_tag="Ccel_1046" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: gme:Gmet_1705 cobalamin B12-binding/radical SAM + family protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75408.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MSENKYVCLIQPHTSYKLATIQPALFDQFDSIGLLALAGYLREQ + GYTVDILHLAKAYRNGYTKKQVEEKIKTRKPILFGIGNMWLHQSVGMLETAQMIREIY + GDIPIVVGGQHASFFARDIVQDYSNQINGVIVGEGEETLYQLVKSVEEGGTIDPTVPG + FMSKQKDGEILYTPRIVTLEMDSLPFMSHKGVWPEVRAKNGDIIPSVAAIDTVRGGCP + TNCGHCLEANNLGKHGREKRAFHSPEYLAEQLKRYLDEGKTYIVIQDSFYANGDGPIA + EFIERASKDNLRTEAMHFFIEPGYVSSDIFKVLERFPADKVAIDYGIETGSEKVAKNM + NRFFKMDSIYRDIEALGKTNTLATAWWLISLPGETEEDVRLTEEAIKNTIDLGVFTER + VSQMLLFPQSELYKNRHLYDINAYFHNYNDFKVFSTVERRENGIYPELVTHDMPYQTK + EDTLMLLRDLKKTVRVATESSRHLEKMQKLGYQLNDYDFF" + gene 1303176..1303469 + /locus_tag="Ccel_1047" + /pseudo + gene 1303465..1303698 + /locus_tag="Ccel_1048" + /pseudo + gene 1303753..1304391 + /locus_tag="Ccel_1049" + CDS 1303753..1304391 + /locus_tag="Ccel_1049" + /inference="protein motif:PFAM:PF00302" + /note="PFAM: chloramphenicol acetyltransferase; + KEGG: cbk:CLL_A2166 chloramphenicol O-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="chloramphenicol acetyltransferase" + /protein_id="ACL75409.1" + /db_xref="InterPro:IPR001707" + /translation="MKYIEMEKSPRKNIYNLFRQMDYPHLNLCANVDVTRLHNYTKQY + RLSFFKTMMFFVSKTANEIKEFRYRIQGENVVEYDTIHPSYILLTKEDAFNFCTVEFK + DDFIEFYSEAVRTAKELQGNIDLEHEPERDDLILITCTPWVSFTSIMHPAHMHPVDCI + PRIAWGKYFDEGERKKMPLGVQAHHSLMDGLHVGKYYTLLQEYLDDPEPHLK" + gene complement(1304447..1306555) + /locus_tag="Ccel_1050" + CDS complement(1304447..1306555) + /locus_tag="Ccel_1050" + /inference="similar to AA sequence:KEGG:CD0455" + /note="KEGG: cdf:CD0455 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75410.1" + /db_xref="InterPro:IPR014016" + /translation="MNGKQIQEKPLNRIEDNADDSSIFNNFPEEIEHLEEIKEKLNDA + LKNYSKSVKQYDEQYMNSKRYLADYRSEIDPKEIFQNEISMKQIERAGTLAVKMRERI + NKLIESPYFARIDFSEDESELPSVFYIGRFSFSDADQSNILIFDWRTPVSSMFYDCEL + GQAGYDAPIGRVNGNLTRKRQLKIAQGQMKYVLESSINIQDDVLQRELSHTSDEKMKT + IISTIQREQNQIIRNEQAETLIIQGVAGSGKTSIALHRIAYLLYRFKETLSAQNVVIL + SPNKVFADYISNVLPELGEEPIFEMSFADVAEIQLDGIIKFEPDKDPLETNDPAWAER + VKFKSGFDFVKMMDQYLEYAAAEYFEPTDYEFAHFKADREWILSRYNAYKNYPVKKRL + FEVSSDIYDKFQTENLMGDELPKPKAVLKKLGDMFKIKNTLALYKDFYKTIKLPEKFV + MPDKKLLEWADVYPFMYFHSAFEGLKENQLIKHVIIDEMQDYTPAQYIVINKLFKCKK + TILGDFGQSLNPNHLHSLDDLKKVYEGVNYVELNKSYRSTYEIINFAKLIQNVAKLEP + IERHGDVPELILCNDTQDELIKIKDKIEAFQQSGNVTLGIILKTNSMAASLYDTLSKD + YDIQLITPDSLQFVNGITVTSIQMSKGLEFDEVIIPSANSETYCTDYDRKLLYIACTR + AMHKLSLLYTGSLTELIENK" + gene complement(1306590..1307420) + /locus_tag="Ccel_1051" + CDS complement(1306590..1307420) + /locus_tag="Ccel_1051" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: dsy:DSY0018 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75411.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR000182" + /translation="MNSLDNVVAAIGYIENHLTEKIDLDTVASAVHYSKYHLHRIFTE + IVGMTIHDYIQRRQLTEAAKLLVFSGKNIMEIALLAGYTSQQAFTNIFKAMYKQSPLQ + FRRNEVFYPLQLEYKFDSHPDPNLKKRKLKRDLRFATELDIPRWMELVRLVIDGFPNL + VEELHIKALNQCILERSALIMTEGSFAIGIMMISYSTGSIDFLGVHPLFRKQGITKAL + LDRAISELLEHKNITITTFREGDKADTGYRKALKELGFAEAELLTEFGYPTQKMIISN + " + gene 1307928..1308725 + /locus_tag="Ccel_1052" + CDS 1307928..1308725 + /locus_tag="Ccel_1052" + /inference="protein motif:PFAM:PF08242" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: chy:CHY_1052 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 12" + /protein_id="ACL75412.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MFKCEKLTDQIIQKLYRNNSLEGENEMEYWNRLWQKSIDYYKEK + GIPEEIESLWWKYLYDEMLEHYIELLGTINNKTICELGCGSGYSSIMMATKGAKVTLV + DYAPLSSVYSKHICQYMNIDTDKINFITDDAFSKDLDIGQFDVVWNCGVIEHYKWDEA + VELIKIMAKHATKGGKVMVTLPNLLSPEFIYLTVTVGKGSEKYYSYRMLKKIMQEAGL + SNVKVQAINYWLPSNMSASFSNKLREVKFFRHFKGLCWLFTGIGEKQ" + gene 1308975..1311617 + /locus_tag="Ccel_1053" + CDS 1308975..1311617 + /locus_tag="Ccel_1053" + /inference="protein motif:TFAM:TIGR00231" + /note="TIGRFAM: small GTP-binding protein; + PFAM: elongation factor G domain protein; protein + synthesis factor GTP-binding; elongation factor G domain + IV; protein of unknown function DUF901; + KEGG: cth:Cthe_0033 small GTP-binding protein" + /codon_start=1 + /transl_table=11 + /product="small GTP-binding protein" + /protein_id="ACL75413.1" + /db_xref="InterPro:IPR000640" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR002127" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR005517" + /db_xref="InterPro:IPR010298" + /translation="MKKLIIGILAHVDAGKTTLSESILYLSGKIGKLGRVDNKDAYLD + TYELERARGITIFSKQAVFETGGINITLLDTPGHIDFSAEMERTLQVLDYAVLVISGA + DGVQGHTKTLWRLLDMYNVPAFIFVNKMDQNGTEKSKLIKDMKKQLSDGCIDFGQVET + TEFYEQLSMCDETILETYLEKGHIETKQISKAVREHKVFPCFFGSALKLEGIEQLMQG + IAKYTTIPCYPEEFGAKIFKITRDEQGNRLTHLKLTGGKLKVKDLLTNGKWEEKINQI + RIYSGKKYEAVSEIEAGSVCAVTGLSQTRPGEGLGIESTSGSPLLEPVLFYRIILCDP + RMMLPKLRQIEEEEPELNIVWDEQLQEIHAQIMGEVQIEILQSLIQSRFGVVVSFDAG + RIVYKETIANTVEGVGHFEPLRHYAEVHLLLEPGEPGSGLKFGTECSEDILSRSWQRL + ILTHLEEKVHKGVLTGSALTDVKITLVSGRAHNKHTEGGDFRQATYRAVRQGLMEAES + VLLEPYYTFQLELPEKMVGRAMTDIEKMNGTSKISQTNGETAVLVGSAPVITMRNYQQ + EVTAYTKGAGRLFCSVKGYEPCHNTQEVIDSIGYDSERDMANPTGSVFCAHGAGFSVP + WDEVKNYMHVESYLKKKENSFKEPEKRHGISQELSISLEEIDQIINRTYYVNQGKKSA + WKRRKTAEESYYEQASYVRAQKEHKEEYLLVDGYNILFAWPELKELADKNAEAARMKL + LDSLSNYQGIRQSRIIVVFDAYRVQGHREEIIDYHNIHVVYTKEAQTADQYIEKFAHD + NQKKYNITVATSDGLQQIIVRGAGCALLSARELKIEVEDANKRIKQEFKEIQRKDRNY + LIDALPEEAKQQMEEIIKEDKDDK" + gene 1311643..1312578 + /locus_tag="Ccel_1054" + CDS 1311643..1312578 + /locus_tag="Ccel_1054" + /inference="protein motif:PFAM:PF01207" + /note="PFAM: dihydrouridine synthase DuS; + KEGG: cbt:CLH_1332 dihydrouridine synthase family protein" + /codon_start=1 + /transl_table=11 + /product="dihydrouridine synthase DuS" + /protein_id="ACL75414.1" + /db_xref="InterPro:IPR001269" + /translation="MKFYFAPMEGLTGYIYRNAHNAFFNSIDKYFSPFIIANQIDGFK + TRDLKDISPENNQELVLIPQVLTNNAKDFIYTSKKIKSMGYTEINLNLGCPSGTVVSK + NRGSGFLAKKEELDVFLEEIFSQAITKISIKTRIGKDQPEEFYDLIRIFNKYPINELI + IHPRIQKDFYKNKPNMKIFRDALAESKNPVCYNGDIFTAKDYKEFCNDFPGVDTLMLG + RGLLMNPALAGYVKNGRKLEKSLLKKFHDKVYNDYKDILSGERNVLFKMKELWFYMIN + VFTDNEKYAKKIKKSQRLSDYDEAISRLFEEQEIV" + gene 1312646..1313224 + /locus_tag="Ccel_1055" + CDS 1312646..1313224 + /locus_tag="Ccel_1055" + /inference="protein motif:PFAM:PF00881" + /note="PFAM: nitroreductase; + KEGG: cbe:Cbei_0725 nitroreductase" + /codon_start=1 + /transl_table=11 + /product="nitroreductase" + /protein_id="ACL75415.1" + /db_xref="InterPro:IPR000415" + /translation="MNKIVENMLTRRSVRNFKKDQISVEDLSTILLAGSYAPSGMGMQ + SWKFTAIQNTDTMKKVNESIRQTLLTIPIVAETHPYIVSLIKNAEDENSNFLYNAPTY + IIVSNLIDNKNAMPDSALAIGNMMLAAHSLGIGSCWLNQLPGFTNMSLIREIMTVLEI + PKNHIIYGSVVMGYAAEEPAPAAPRKNVIHII" + gene complement(1313429..1314148) + /locus_tag="Ccel_1056" + CDS complement(1313429..1314148) + /locus_tag="Ccel_1056" + /inference="similar to AA sequence:KEGG:CLL_A1368" + /note="KEGG: cbk:CLL_A1368 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75416.1" + /translation="MEGNFIFVSNKIMIEKEIENGLNILNNSYKLNEINCGQFSNLQI + QNIAYNIKQYEIVGVGNLLLMESKDSPVLQMLSFVITPYYKNLPLFSSDCLFIGEKRN + FLVEYYDLVREKDSLYNAYLNKLQAIKDKYEDLPDMKLKECWYDSLKTVCIAKKTLIA + HDDIMLSIFNENLHTFIEAERETDILSKSEKKAKLQITRDYVNKLVDIGGVSTNVFKN + CMGAESTKKFFNEVFFGTEKF" + gene 1314440..1315720 + /locus_tag="Ccel_1057" + CDS 1314440..1315720 + /locus_tag="Ccel_1057" + /inference="similar to AA sequence:KEGG:CLL_A1370" + /note="KEGG: cbk:CLL_A1370 pyridine nucleotide-disulphide + oxidoreductase domain protein" + /codon_start=1 + /transl_table=11 + /product="pyridine nucleotide-disulphide oxidoreductase + domain protein" + /protein_id="ACL75417.1" + /db_xref="InterPro:IPR003042" + /db_xref="InterPro:IPR013027" + /translation="MSKIVDLIIVGAGPAGLMAAKTAAEIGLRVVIVEKNVSFDHLKR + ACSAQIILDDGYENEFVRVNDGKIIFERNNFEVKYSGNLKNITDKYYYSPHGHRIHFA + HSARKPFAVKFDKNRLLQELCKECENLGVDIRMSTLAYKGSDMGDYVKIDLKSDDKYY + TLEGKKAIIAEGVNANLTGKLGLNQNRQQFATAHVVKYILEGVSGYIPNSWNLYYGKV + YHSNAAVIVGPSLYGDDTVELTLSGSANMRPLSIFENVITNSPLKKQFANATVLDTHG + CAVKAFMSLKKPYTGNVLSIGDSAAFVEVEVQGALMCGYHAAKAINSELDGNNGFEKY + TDWWNESFEFNHNEYLKVSQGYALVPTYTDDELDYLFSLVEGKTLEGTYSQYKTPKLI + WDSILQSKDKIQNERPGIFNKILNMNQLTLAATF" + gene 1315757..1317034 + /locus_tag="Ccel_1058" + CDS 1315757..1317034 + /locus_tag="Ccel_1058" + /inference="protein motif:PFAM:PF03486" + /note="PFAM: HI0933 family protein; FAD dependent + oxidoreductase; + KEGG: cbk:CLL_A1369 pyridine nucleotide-disulphide + oxidoreductase domain protein" + /codon_start=1 + /transl_table=11 + /product="HI0933 family protein" + /protein_id="ACL75418.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR003042" + /db_xref="InterPro:IPR004792" + /db_xref="InterPro:IPR006076" + /db_xref="InterPro:IPR013027" + /translation="MKNLFDLVIVGAGPAGLMTAKTAAEMGLKVVIIEKKRDINKIRR + ACCAQFVMDNGYENESLQIQDNKVIFTRNNFSIPYTGRLKKVVNNYHYSPNGHRIHFA + HSDGRPFAFKFDKEQLLQDLWEDCERLGVELRLETLAYGGKDTGNSVKLDLKSKGKTS + TIEAKKLVIAEGANAKLTDTFGLNNGRGLFGTPFVLIYTIGNTYGFEPGSWNQYYGRA + YHPYGEIIVAPSLEENDTIELTIIGNKQLLPETFYEGITKNSPLRENFANSQIVDKQG + CSLRSYAPLKKPYLGNVITIGDSAAHVEVIVQGALMCGYHAARAIKDELQGKNGFEEY + TVWWNDAFDFNRGEFNDFISLYGSLTMMPKYTDDELDYLFSLLVGKVLNGNFSQFEVP + KKVWNSILEYKGQIETERPLLFEKIKKIDNLKL" + gene 1317276..1317842 + /locus_tag="Ccel_1059" + CDS 1317276..1317842 + /locus_tag="Ccel_1059" + /inference="protein motif:PFAM:PF00440" + /note="PFAM: regulatory protein TetR; + KEGG: cbk:CLL_A1977 transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TetR family" + /protein_id="ACL75419.1" + /db_xref="InterPro:IPR001647" + /translation="MTTRTKQAIATKNKIYKCGENLIRKNGFDAVTVEQIAKKAGVSV + GTYYYYYESKMDLLREAFNKADKYFLEQVEGKLTETGCKKRIVEFFDMYAEYTLKDGI + DVIKKFYTSENKMFIVDGRGMQNVLINIIKVGQKNNEISNDSAPEALTKMLFVVARGI + IFDWCLHDGKTDLKAEMKSIIEIMVKQL" + gene 1318042..1318929 + /locus_tag="Ccel_1060" + CDS 1318042..1318929 + /locus_tag="Ccel_1060" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: scl:sce3301 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75420.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKSNFITFLLLAAFITFCLPTTSFAAGQITGSEVLVIGDSFLA + MSHDITKRLEQNAKNDGVLASTDKFRDLSVSGTMLSGGISPNIPQQYQNGVNAGPVKY + VIMDGGGNDCIGGSVSNAVTAARNLFQQMGKSGTVKVFYLFYPDAVGGMAGMLNPNLN + TLRPQIQSIVTSSTTPKGYFLDLRPTFEGKYSSYILSDGIHPTMEGSYAAADAIWAEM + KKVGFFGSTTPTPKVGDCNNDGNIDAIDFSLLKQYLMNPGSTYNSLMDLNADNTINAL + DFAIMKKYLLGMVNTLPNN" + gene 1319161..1319370 + /locus_tag="Ccel_1061" + CDS 1319161..1319370 + /locus_tag="Ccel_1061" + /inference="similar to AA sequence:KEGG:CKL_2028" + /note="KEGG: ckl:CKL_2028 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75421.1" + /translation="MKTGCTNGFFSLSPSELTLLAAVIGLAVAQELENCQRDVFGNFL + TSVAQNILTYDSQATCLNEQKNQNI" + gene 1319394..1319581 + /locus_tag="Ccel_1062" + /pseudo + gene complement(1319877..1320281) + /locus_tag="Ccel_1063" + CDS complement(1319877..1320281) + /locus_tag="Ccel_1063" + /inference="similar to AA sequence:KEGG:Cphy_2066" + /note="KEGG: cpy:Cphy_2066 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75422.1" + /db_xref="InterPro:IPR010916" + /translation="MKSIQVKILIAIAVLVLVGIFFVSIGSVKVTITNNSVTVKGTFV + GSTTISVNEITSIEYVDSLDIGSRQVGMGTYKMAAGTYKNDKFGSFKLYSYSKVNAFV + IIHYGDKTLVFNQSDVEATQNVYDQIKDIKVE" + gene 1321126..1321818 + /locus_tag="Ccel_1064" + CDS 1321126..1321818 + /locus_tag="Ccel_1064" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: amt:Amet_1577 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75423.1" + /translation="MEKRKVLGIASFFMIIVMAILFADNKHGFVLGDFILTKMGVSVW + SDGNSGLHYTGVLAATLILVGIAGVIRFKKDVHINFGKFAVIFFIIGVIIYQPVYDSV + YGFVKSNLNGLHSIEYIRDGSEINFTSDSKIISIDGKIKLKNFSNDKKEFYIKLPIGK + NPMAQNPEFITVCNTSNEPAKFVMWPKSQVNLHIKFSIQQDEKSVLQSGNLISPDIKI + YNESEEIRQGKR" + gene 1321913..1322221 + /locus_tag="Ccel_1065" + CDS 1321913..1322221 + /locus_tag="Ccel_1065" + /inference="protein motif:PFAM:PF01022" + /note="PFAM: regulatory protein ArsR; + KEGG: dsy:DSY4600 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, ArsR family" + /protein_id="ACL75424.1" + /db_xref="InterPro:IPR001845" + /translation="MLISKHKKNAKIFKAFCDENRLMILELLQTGEKCACMLLEDLNI + GQSTLSHHMKVLCDSGVVKSRKEGKWTHYSISEEGSACARELLSKVTEVYATANNCTC + " + gene 1322299..1323312 + /locus_tag="Ccel_1066" + CDS 1322299..1323312 + /locus_tag="Ccel_1066" + /inference="protein motif:PFAM:PF03773" + /note="PFAM: permease; + KEGG: blj:BLD_1092 hypothetical permease" + /codon_start=1 + /transl_table=11 + /product="permease" + /protein_id="ACL75425.1" + /db_xref="InterPro:IPR005524" + /translation="MEIFKGIGLFFQNEVLGMKWLNALIGNMLSSMGLDVSGRVGGSV + QFFIYDVIKITILLCLLIFIITYIQSYFPPERSRRILTRFRGIGANTIAALLGTVTPF + CSCSSIPLFIGFTGAGLPLGVTFSFLISSPMVDLGSLVILMSIFGAKVAVTYVIVGLI + IAVIGGTLIEKMHMEKYVEDFILAAGSIDIESPDLSKKERVIYAKDQVVSTFKKVFPY + ILVGVGIGAVIHNWIPEKWIETVLGSNNPFGVVLATLIGIPMYADIFGTIPVAEALLY + KGARLGTVLSFMMAVTTLSLPSIIMLRKAVKPRLLGLFIAICTIGIIIVGYLFNVFDF + LLI" + gene 1323343..1323645 + /locus_tag="Ccel_1067" + CDS 1323343..1323645 + /locus_tag="Ccel_1067" + /inference="protein motif:TFAM:TIGR00412" + /note="TIGRFAM: redox-active disulfide protein 2; + KEGG: dsy:DSY4674 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="redox-active disulfide protein 2" + /protein_id="ACL75426.1" + /db_xref="InterPro:IPR005243" + /translation="MSLFKKKKEDLSETVGKGEAYVKVLGSGCAKCNQLEAAVKEALA + TLRMDTSIEHVKDFAQIASYGVMTTPALVVDGKVVSYGKVLKTEEVIKILEKVKEQ" + gene 1323647..1324060 + /locus_tag="Ccel_1068" + CDS 1323647..1324060 + /locus_tag="Ccel_1068" + /inference="protein motif:PFAM:PF01451" + /note="PFAM: Protein-tyrosine phosphatase, low molecular + weight; + KEGG: dsy:DSY4671 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein tyrosine phosphatase" + /protein_id="ACL75427.1" + /db_xref="InterPro:IPR000106" + /db_xref="InterPro:IPR017867" + /translation="MNKPKVAFICVHNSCRSQIAEALGKHLASEVFESYSAGTETKPH + INQDAVRLMKQIYGIDMEKTQRSKLLEDIPQVDVVVTMGCNVKCPFLLCKCSEDWGLE + DPTGKNDEDFIKVIQTIEEKIMALKHSLDKQNHRS" + gene 1324214..1324663 + /locus_tag="Ccel_1069" + CDS 1324214..1324663 + /locus_tag="Ccel_1069" + /inference="protein motif:PFAM:PF00173" + /note="PFAM: cytochrome b5; + KEGG: cac:CA_P0144 steroid-binding protein" + /codon_start=1 + /transl_table=11 + /product="cytochrome b5" + /protein_id="ACL75428.1" + /db_xref="InterPro:IPR001199" + /translation="MDCEDAICRRIKTMAAETDNYINLINTAPCIYTRNMLLYQLREK + INEIDFLIGFICRKENQMEISPIELPQQHDRKDFTLEELAKFNGKDGNPSYVAVNGTV + YDVTDNAAWAAASHFGLTAGKDLTAEFASCHAGQSILNKLKVVGKLI" + gene 1324663..1325562 + /locus_tag="Ccel_1070" + CDS 1324663..1325562 + /locus_tag="Ccel_1070" + /inference="protein motif:TFAM:TIGR00391" + /note="TIGRFAM: hydrogenase (NiFe) small subunit HydA; + PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; + KEGG: cbl:CLK_1224 [Ni/Fe] hydrogenase, small subunit" + /codon_start=1 + /transl_table=11 + /product="hydrogenase (NiFe) small subunit HydA" + /protein_id="ACL75429.1" + /db_xref="InterPro:IPR001821" + /db_xref="InterPro:IPR006137" + /translation="MNKTKTCPEYAARLKTARELFDRVKDKISEGTLMRRNLVWLELT + GCSGNIISLLDGANPDFKYLISQMTNFLYDNSLVAAEGEKAMEKLMGSIGDEYILAVE + GAVATKNNGMYNVIGRWQGKPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPS + DCVSVQSILNRKVIKLPGCPCHPDWFMGTLAHILLYGEPELDNRDRPVLFYSTLIHDR + CPRRSFFDKGIFAKKLGESTCMFKLGCRGPVTRIDCPIRKWNQYVNWPVEDDTPCIGC + AQFGFPDQMEPFITYNTTREVKE" + gene 1325559..1326971 + /locus_tag="Ccel_1071" + CDS 1325559..1326971 + /locus_tag="Ccel_1071" + /inference="protein motif:PFAM:PF00374" + /note="PFAM: nickel-dependent hydrogenase large subunit; + KEGG: cbb:CLD_2800 [Ni/Fe] hydrogenase, large subunit" + /codon_start=1 + /transl_table=11 + /product="nickel-dependent hydrogenase large subunit" + /protein_id="ACL75430.1" + /db_xref="InterPro:IPR001501" + /translation="MTRRIIINPVTRISGFMEIDAVIDKNTVTDVKTEGLLFRGFEKM + LAGRNPFDAVYFTQRICGICSTAHSVASTLALETAMNVIPAEQGKYLRDILHGCEFMQ + NHIRHFYQYTIPDFVRLPDKYPLYVTEHNDFRIPKGKNDEIVKHYFESLDISRSAHEM + LTVLGGKAPHNHGIFVGGITTQATTDKIIKIKSILHTIRKFIADIMIPDAYTIAQYYS + DYYKKGRGYGNLLSYGCFNKYNELGTLYVDPLVYTQGKINVFNPGEITEEIDYSWYKD + KMSEYKPTDTITEEDMSKSKAYSWVKAPRYSGIPYEVGPLARQWLSGEYRNGISTMDR + TIARVMETSKIAEIISILIENLIPGVTVQKEYTIPTSSEGAGLIDTTRGALGHWLKIK + NGIISFYQIITPSAWNLSARGNNGMRGTAEQALMNTIIRDIDSPVELGRIIRSFDPCV + SCATHVYSQGEFIKTIQVMP" + gene 1326968..1327432 + /locus_tag="Ccel_1072" + CDS 1326968..1327432 + /locus_tag="Ccel_1072" + /inference="protein motif:TFAM:TIGR00072" + /note="TIGRFAM: hydrogenase maturation protease; + PFAM: peptidase M52 hydrogen uptake protein; + KEGG: cac:CA_P0143 hydrogenase maturation protease delta + subunit, HyaD-like" + /codon_start=1 + /transl_table=11 + /product="hydrogenase maturation protease" + /protein_id="ACL75431.1" + /db_xref="InterPro:IPR000671" + /translation="MKELIVIGIGNRLMMDDGIGVRVVEELKSKNTKADILYVVGETD + VYYCLNQIEDALMVIIIDAVYLKKEPGSISIIPFDRASENYINPMSVHDCNLLGEMRG + KNIKGVLIGIEPYEINYSTSLSEVLESRYIRISEDIGDIIEDFTKNKRASQD" + gene complement(1327474..1328001) + /locus_tag="Ccel_1073" + CDS complement(1327474..1328001) + /locus_tag="Ccel_1073" + /inference="protein motif:PFAM:PF07883" + /note="PFAM: Cupin 2 conserved barrel domain protein; + KEGG: cth:Cthe_2503 cupin 2, barrel" + /codon_start=1 + /transl_table=11 + /product="Cupin 2 conserved barrel domain protein" + /protein_id="ACL75432.1" + /db_xref="InterPro:IPR013096" + /translation="MYQCPYLNNPDFWSQFPSQYLPYTEQTKPCSPIMLKDYGPNPFV + VDIEKATKQNNNFRLALWTGNHLQVTLMSINPGEEIGLEIHPDLDQFIRIEEGQGLVK + MGDSKNYLDFQANVREDFAFIIPAGKWHNLINTGNKPIKLYSIYAPPQHPFNTVQKTK + ADAQAAKENRNYLYY" + gene 1328304..1329032 + /locus_tag="Ccel_1074" + CDS 1328304..1329032 + /locus_tag="Ccel_1074" + /inference="protein motif:PFAM:PF07702" + /note="PFAM: regulatory protein GntR HTH; UbiC + transcription regulator-associated domain protein; + KEGG: cbt:CLH_3253 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL75433.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011663" + /translation="MSGMVPKYYLVKQKIVEIIDNEEIGPGGLIPSERELMGIFGLSR + ITVKKAIDDLVNEGYLYRIQGKGTFVKKDTLDQDLISITSCTQDIIKLGMTPSKRLLK + SEVIEADKVMLRKLQLSQGDKVYKVKRVYYANNEPVNLTTVHLPCKLFPLIDTYDFGV + DSIYKVLETKYGTKITKAIRTIEAVLAVDEVARELEIKEGDPVLLFKAVTHGMVNGRE + IPIETFKSFYRSDKFKFYINQVHE" + gene 1329221..1330435 + /locus_tag="Ccel_1075" + CDS 1329221..1330435 + /locus_tag="Ccel_1075" + /inference="protein motif:PFAM:PF02608" + /note="PFAM: basic membrane lipoprotein; + KEGG: cbt:CLH_3251 putative basic membrane lipoprotein" + /codon_start=1 + /transl_table=11 + /product="basic membrane lipoprotein" + /protein_id="ACL75434.1" + /db_xref="InterPro:IPR003760" + /translation="MKKNTKNLSFLLVVIMLVSIIFTGCSTSKTGNSSASSSNSDTDN + TGLGIALITSAAGPNDKGYNQSAIAGLEKAKKDLGIKYKVVETTDVPGSLSQLAGAGY + KLIFSLEYNFDALIKGVGGSKPIAEQYPDTTFVIFNDNPNVNDDGSVKHKNVVSVLFD + VHEASFMAGALATLVNENASKLFNSSEYSFTSGDAGRKVGFLGGSKSNGITVFGYGFA + EGINYVAKELGVNYTFYSDYNAGFSDSASGATKANTYYSDGANIVYAVAGAVGDGVDA + KAKEVKKLSIEVDANKDSNQPGYILTSVLKNTEVPVYEIAKNYKENAMDKVNGKVLSY + NLATGATGITDLSVIESKITADGKAKWDEIKGQLKTISDKIASGEIKVTNAQAGDKFD + KTKLANLKMPND" + gene 1330469..1332016 + /locus_tag="Ccel_1076" + CDS 1330469..1332016 + /locus_tag="Ccel_1076" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbt:CLH_3250 ribose import ATP-binding protein RbsA" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75435.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MYAIEAVNLTKKYGDFVANDNINLSIGKGEITAIVGENGAGKTT + LMNMFFGLQRPTSGELLVNGKKVSFGSSLDAINCGLGMVHQHFKLVPSLTVFENILLG + VEISRKINFSQKLKLGTPIIDKKCEKKYVQKIIEDYKFELNADDVVENISIGAKQRVE + ILKMLYRNVDILIFDEPTAVLTPQEVDELLLSFKELKKQGKTIILITHKLREVMEVSD + KVIVIKRGKVVGSKATKDTNSAEIAKMMVGREVILNVSKEDKDVRENKVAYSVSKLST + QDNFGKKVIEDISFEIKEGEILGVAGVEGNGQSELVRVLSGLMESTEGSVHLYGKDIT + NKWPSSLRAAGIGIVPEDRYAQGLCKDMTILENIIAGYHRNKKVCKNGIMLKNEIEDT + GNKLIEKYDIRIAEKNGNVSQLSGGNAQKIIVAREFDSDPKVLIVSQPTRGVDIGSIE + FIHNKILDLRSENKAILLVSSELSEIMNLSDRIIVMYKGRIVGEVEGKKADSTKIGLL + MAGLSLE" + gene 1332028..1333110 + /locus_tag="Ccel_1077" + CDS 1332028..1333110 + /locus_tag="Ccel_1077" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: cbt:CLH_3249 sugar ABC transporter, permease + protein" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75436.1" + /db_xref="InterPro:IPR001851" + /translation="MKKNNTLLKNISNVLFPVISALILGGILIAAIGENPFLTYSVMI + KKSLFSLDGLLKTLHFASPLILTGLAIAITFKANIFNMGVEGQAVLGAFFAGVVGFTV + KGLPPVLHITLCVLTGIVVGMLFALVPALLKAYFNVNEMVVTLMLNYVVVEIVKFLSQ + GVFKDPSSGYVSTYPIAESAMFKKIFDSNLTAFFFIALIVFAIMYVVFNKSKLGYEIK + AIGKNPEFSEATGMNVSKKIIIIMLISGAVSGLAGAGFLMSEKYRFTLDFSGSPGLGW + DGMLIALLGSHNPIGILVAAVFYAALKTGSDYIGVFTNVPKDIVGVIQGILILLLSVK + FFNEKFHLFEKFKFLWKKSSSTDLNK" + gene 1333123..1334040 + /locus_tag="Ccel_1078" + CDS 1333123..1334040 + /locus_tag="Ccel_1078" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: cbt:CLH_3248 inner-membrane translocator" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75437.1" + /db_xref="InterPro:IPR001851" + /translation="MSLLNNILYDMVYHSAPLILAVLGGLFAHRANVLNIGLEGMMLM + GAFSSTLFVLVTGSLWLGVLLSVLCTLILGMIFSFFGITMKSNFIITGFGINIFVAAL + SSFVLKYMEMANINVSSIINTAGLKINIPVIKDIPVLNSLLSGHTAITYLSIILIAVV + SVIVYNTKFGVYVRVVGENEEAAKSVGINSAAIKYIAVLIGATLCALAGANLAVERMA + LFTNNMTAGRGFIAIAAIYCGQAKPIKSALYAILFGLAKSLAINLALFAGPISGLFEI + VPYLMIVIVLFAVSTIEKRRTNIRGFKLE" + gene 1334033..1334602 + /locus_tag="Ccel_1079" + CDS 1334033..1334602 + /locus_tag="Ccel_1079" + /inference="protein motif:PFAM:PF00857" + /note="PFAM: isochorismatase hydrolase; + KEGG: cbt:CLH_3247 isochorismatase family protein" + /codon_start=1 + /transl_table=11 + /product="isochorismatase hydrolase" + /protein_id="ACL75438.1" + /db_xref="InterPro:IPR000868" + /translation="MNNTALIIVDMVKDFTDPEGLVFYPQNLEILPRIKQVLDECRKH + NMLVIFLRHSNRKDKFDKNLVNMRPNCIEGTGGDEIDPMLTVDPVKDYVIKKRRYSGF + VGTDLDMVLRENKIQNVILVGTKTNCCIRATVTDAYYLDYTPIVVSDCVATNDETVNQ + VHLTDIKKYLGKVITSQELFDLLDKGEMV" + gene 1334602..1335555 + /locus_tag="Ccel_1080" + CDS 1334602..1335555 + /locus_tag="Ccel_1080" + /inference="protein motif:PFAM:PF00294" + /note="PFAM: PfkB domain protein; + KEGG: cbt:CLH_3246 kinase, PfkB family" + /codon_start=1 + /transl_table=11 + /product="PfkB domain protein" + /protein_id="ACL75439.1" + /db_xref="InterPro:IPR002139" + /db_xref="InterPro:IPR002173" + /db_xref="InterPro:IPR011611" + /translation="MKYDVVINGYISLDRIIKTTTPLRYGYTSLVENSDNAKIQYGGC + STNIAYLMAKLNMKSLPMIRVGADDYRETGFYDYLKNAGVCMDAVEIVPDETTSNCYL + IADSENNHVTIFYPGAMDKKYAKGMNPEFFAQSKLGVMTVGSYEDNLEFYRQCMAKKV + PLVFGMKCDFDAFPEKFFKEVLSSSSIIFCNEGEQGEIQRVFGLNDIRELFDNTAAQI + IVTTLGKKGSVYYQKTENGILSHRIAAAEFGSVVDTTGSGDAFMAGFLYGYLKGRSIK + DCCSLGSVLSSFIIEKVGCTTNAPSEQEFLERFEKFIEEEV" + gene 1335563..1336321 + /locus_tag="Ccel_1081" + CDS 1335563..1336321 + /locus_tag="Ccel_1081" + /inference="protein motif:PFAM:PF01048" + /note="PFAM: purine or other phosphorylase family 1; + KEGG: cbt:CLH_3244 uridine phosphorylase" + /codon_start=1 + /transl_table=11 + /product="purine or other phosphorylase family 1" + /protein_id="ACL75440.1" + /db_xref="InterPro:IPR000845" + /translation="METLYAKTQEKDIAKYVLFSGDPWRVETVAGQLEDVKHIAFARE + FNTYTGYYKGVRITVTSTGIGAPSAAIAMEEMYQCGMEVAVRMGTTMGLKDDLLGKLI + IPTGSMREEATSKTYVPVSYPAVADFDLINCMNKSTLQNNRQYVNGLSCTLDGFYSQM + RDSRLSEKMQRDMSETFTALKKYNISAVDMESSCMLVLANLMGIKACIVTMTTVLENL + KDFLKGDARTQSEVDLCKIAMDGLVIYHEEVASK" + gene 1336318..1337106 + /locus_tag="Ccel_1082" + CDS 1336318..1337106 + /locus_tag="Ccel_1082" + /inference="protein motif:PFAM:PF03437" + /note="PFAM: photosystem I assembly BtpA; + KEGG: cbt:CLH_3243 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="photosystem I assembly BtpA" + /protein_id="ACL75441.1" + /db_xref="InterPro:IPR001865" + /db_xref="InterPro:IPR005137" + /translation="MKGLEFKDKPIVMGMVHCLALPGTPDFCGDMKKITDQAVKEAIT + LEKSGMDAIIIENMGDNVFGVNMDIEQSCALAAISAIVAQNVNIPIGIDAAMNDYKTA + LSIAKAIGADFVRIPVFVDTVEFFGGIIQPCAREAMKFRKNIEAENVKIFADIQVKHT + HMVLPHVSIEDSAKAAEACGADAIIVTGTHIGVETPIDIIKRVKKVISIPVIAGSGVK + TNNIKEQLGIADGAIVGSSLKEGGNIKNPISLELCTELIKALNI" + gene 1337137..1338282 + /locus_tag="Ccel_1083" + CDS 1337137..1338282 + /locus_tag="Ccel_1083" + /inference="protein motif:PFAM:PF00465" + /note="PFAM: iron-containing alcohol dehydrogenase; + KEGG: cbt:CLH_3242 NADPH-dependent butanol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="iron-containing alcohol dehydrogenase" + /protein_id="ACL75442.1" + /db_xref="InterPro:IPR001670" + /translation="MMRPMKLAGSQLMFGAGSLAHLKTLTGKRAVIVTGGSSMKKSGI + LQKTIDYLKEAGIESNVFEGVEPDPLFSTVYRGAEVMKQFQPDIIIGLGGGSAMDAAK + AMWVYYEHPGLTTLNDIVPPNVIPKLRNKAILVCIPSTSGTASEVSRSVVITDDETHI + KYGVGNMEMMPDIAICDPEVTVTMPAKITAETGMDALTHALEALASNRANYISNIFAK + NAAKDIIVNLPKAYSQGNDIGSREIMINASMAAGMAFTNVSLGIVHSMAHTLGSFFGI + SHGLADAVILPYVMEFNSHNADAKKLYDELAKELGAADLVNVVCELNKSIGIPSHFAE + LIPDEKKYMDELDAMAEMALKDGCTKTNPVIPSIEQLKELFIKVYKA" + gene 1338447..1339169 + /locus_tag="Ccel_1084" + CDS 1338447..1339169 + /locus_tag="Ccel_1084" + /inference="protein motif:TFAM:TIGR00262" + /note="TIGRFAM: tryptophan synthase, alpha subunit; + PFAM: tryptophan synthase alpha chain; + KEGG: cbt:CLH_3241 tryptophan synthase, alpha subunit" + /codon_start=1 + /transl_table=11 + /product="tryptophan synthase, alpha subunit" + /protein_id="ACL75443.1" + /db_xref="InterPro:IPR002028" + /translation="MKLICYLSNGYPTIESSIEIAKDYIDAGCDIIEVDFPSSDPYLE + GEYIANRMRDALTVCNDYDKYMDGIIEIKNSHPNTKFILLSYENTILEIGVDRFVKFC + VDNDIMDLIYVGKDNREVKSKLIDNGIKISCYVQFHMDENEIRAAVESNGFVYMQAKP + TTNNINPKFPTLKHCIDHLKGLGIKREIYCGVGIYAPEDIKMAKEAGADGVFVGSTVL + KLQTDIPKMKETIALLKKTCNE" + gene complement(1339510..1340139) + /locus_tag="Ccel_1085" + CDS complement(1339510..1340139) + /locus_tag="Ccel_1085" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: chy:CHY_0611 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75444.1" + /translation="MVHGNNRKKVVIIAVTAVILIFGIVGYTFSKSESAAKFFGIKQS + QTLTKAGKDIVATINGENITKKGFNTYKAMINSENKLSDKEILDRIVESHVVYTQAVK + EGFRVSDHQVEAAIKSAREEISMDSKQYKAFKEYISGLKMSEDEYWESVKPTYKKALI + RGAYKNALKQKFKKVKLEDPNEVNSKFSEFYDREIKDLISQAKIQSFLK" + gene 1340435..1340560 + /locus_tag="Ccel_1086" + CDS 1340435..1340560 + /locus_tag="Ccel_1086" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75445.1" + /translation="MLTRNSRNSIVEGVAHGIIADYNIVDYLMDNVYNILEVKIT" + gene 1340592..1341767 + /locus_tag="Ccel_1087" + CDS 1340592..1341767 + /locus_tag="Ccel_1087" + /inference="protein motif:PFAM:PF01861" + /note="PFAM: protein of unknown function DUF43; + KEGG: cbl:CLK_2780 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF43" + /protein_id="ACL75446.1" + /db_xref="InterPro:IPR002723" + /translation="MQDVQDIVFKVYENVHLEEGIVVLKNFLVNAYMYRGTSVKEMSR + MLNLPVPVVSAIKNEFKKNGIVDLSNGIGLTKNGEIYVKDVLGYKNADTDVLKDILEN + TGIDLSRFEKEIEELGAIYQNRPEVDVEVDQSKCTAETGMKRAVLMLKSGCLIGKKIA + CIGDDDLTSIAIVLLLKHIAVSDNLSGMADITVFDIDKRILSYIKKVSEEYKIDIECI + QHDLCNPIDNQYKNKFDCITTDPPYTLNGLNLFLSRGISVLKKESNLSVFLSFAHKTP + QIRFLMQQLFVNEGLILSNIYPKFNVYEGAQILGGVSDLMILTTTAQYTKELISGIFS + DEIYTGKFKQTIRTYECKQCSEKYLVGMNQKITTIEQLKSQGCLKCPANKFNLIRKG" + gene 1341771..1342226 + /locus_tag="Ccel_1088" + CDS 1341771..1342226 + /locus_tag="Ccel_1088" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: rpb:RPB_2043 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL75447.1" + /db_xref="InterPro:IPR000182" + /translation="MENINIRPIKETDIPVIAEFEKEICIISFGDTAVTDLDVHQKKL + LKSHKKNPEGMFVLTVHEKVAGWLWMDEKINFLTNEKYINFRSFYIEKNFQGSELSVK + LMEFAMEFCKSVQANMVVGKVYIDNISMRALYKKFGFKPTHLTMEYKFD" + gene 1342255..1343289 + /locus_tag="Ccel_1089" + CDS 1342255..1343289 + /locus_tag="Ccel_1089" + /inference="protein motif:TFAM:TIGR01686" + /note="TIGRFAM: HAD-superfamily phosphatase, subfamily + IIIC; FkbH like protein; + KEGG: npu:Npun_R3439 FkbH like protein" + /codon_start=1 + /transl_table=11 + /product="FkbH like protein" + /protein_id="ACL75448.1" + /db_xref="InterPro:IPR000182" + /db_xref="InterPro:IPR010033" + /db_xref="InterPro:IPR010037" + /translation="MIKCIVWDLDDTVWDGTLKYNYDVKVKDDILSTIKMADQLGIIQ + TIASRNDYSAAMDKIRELNIDKYFLNPEISDSSKADSIKRISVHFNISPDSIAFVDDN + DFELYEVKRFLPEVMVYNIKDIHFLEAQIKSLADTFPSLSNHRELMEKREKRIQAEKA + FIGTREEFLKECGMTLIIRTFKENDLNRVFELVHRTNQMNNLQTRLDLDSLKKYGMDK + NKAILVCELSDIFGEHGIVGASLFSLNGRKAVLDLFCISCRVEGRGIGTAFLNGAMVS + LKKYKSDIRCFECNYEKKENNKSAYLLLKLLGFETRVKTGKKFLLQIASEEVKEMVIE + WLKIVYGENK" + gene 1343286..1343537 + /locus_tag="Ccel_1090" + CDS 1343286..1343537 + /locus_tag="Ccel_1090" + /inference="similar to AA sequence:KEGG:Nmul_A0275" + /note="KEGG: nmu:Nmul_A0275 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75449.1" + /translation="MKEQIYNQVCEILEEVIEKKKNIIDENTVLLGQGGIMDSLTITR + FINKVESKFQVDIIEEDLELKCLETVGSLTEFLYDGGNK" + gene 1343601..1344614 + /locus_tag="Ccel_1091" + CDS 1343601..1344614 + /locus_tag="Ccel_1091" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta + hydroxysteroid dehydrogenase/isomerase; polysaccharide + biosynthesis protein CapD; dTDP-4-dehydrorhamnose + reductase; Male sterility domain; + KEGG: cac:CAC2332 dTDP-D-glucose 4,6-dehydratase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL75450.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR005913" + /db_xref="InterPro:IPR013120" + /translation="MKTYLITGGAGFIGSNFIRYMLKNYNDIFIINVDKLTYAGNLDN + LTGAPINDTNYKFCCCDICDKDKIEEIFKLHKIDYVVNFAAESHVDRSMTNTKEFIET + NITGTVNLMNAAKKAWEIREDEYINGVKFLQISTDEVYGSCTECCSEESPLNPHNPYS + CSKAAADFYVKFYWDAYKFPVSITRSSNNYGPYQYPEKLIPLMIHNTIENLMLPVYGD + GMQMRDWIYVEDNCRAIDLVLHKGEQGEIYNIATEKKYHNRFVVDKILTYIKGEVRED + MILHVRDRKASDLCYSISTKKIREKLGWSPSVNFDNGLDKTIQWYLDNKDWMDRSLMT + NIL" + gene 1344870..1345289 + /locus_tag="Ccel_1092" + CDS 1344870..1345289 + /locus_tag="Ccel_1092" + /inference="protein motif:TFAM:TIGR03330" + /note="TIGRFAM: S-adenosylmethionine decarboxylase + proenzyme; + PFAM: S-adenosylmethionine decarboxylase related; + KEGG: mja:MJ0315 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="S-adenosylmethionine decarboxylase proenzyme" + /protein_id="ACL75451.1" + /db_xref="InterPro:IPR003826" + /db_xref="InterPro:IPR017716" + /translation="MRPKSNCLVEAKEEQYKFIGTHILGDLYGISNEKLENIDFLEKV + VTDGIMKANASCHGIQVKKFNTGGITLIALLAESHVSVHTYPEYNSTFIDAFTCGEHC + NPQLIIDTIVEGLKPQKVIINQVRRGKNKRIRYIKSD" + gene 1345370..1346005 + /locus_tag="Ccel_1093" + CDS 1345370..1346005 + /locus_tag="Ccel_1093" + /inference="similar to AA sequence:KEGG:Cthe_1933" + /note="KEGG: cth:Cthe_1933 Zn-dependent hydrolase of the + beta-lactamase fold" + /codon_start=1 + /transl_table=11 + /product="Zn-dependent hydrolase of the beta-lactamase + fold protein" + /protein_id="ACL75452.1" + /translation="MKIKWFGHSCFLLTSDNGIRILTDPFNEQVGYPLPETRADIVTT + SHDHYDHDNVEIIKGSYKHIKGIGDFTYDNITIRGVSTFHDEMGGAKRGKNTVFIYSI + DDITICHLGDLGHALSQEQIKEIGKVDVLLVPIGGVYTIDGNTAIEVIKLLKPRISIP + MHYKTEHLSFELDGLDSFLSKISGKRANCNEIVLNKDSLSEYSEILALDYL" + gene 1346038..1346598 + /locus_tag="Ccel_1094" + CDS 1346038..1346598 + /locus_tag="Ccel_1094" + /inference="protein motif:PFAM:PF03352" + /note="PFAM: methyladenine glycosylase; + KEGG: lin:lin1680 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="methyladenine glycosylase" + /protein_id="ACL75453.1" + /db_xref="InterPro:IPR005019" + /translation="MSACIWPGNNPIMQQYHDNEWCRPNYDDSHIFEMLTLEGAQSGL + SWSIVLSKREEYKRAFNNFDIMYCSKLRDEELENIKSEYNVIKNSLKLWSVRSNALAV + LKIQAEFGSFSEYLWRYVDFRPQINNWDSEEHIPAQTPLSEQISKDLKKRNFKFVGPI + IVYSFMQSIGMVDDHIRSCPYHSLNR" + gene 1346819..1347844 + /locus_tag="Ccel_1095" + CDS 1346819..1347844 + /locus_tag="Ccel_1095" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bcs:BCAN_A0517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75454.1" + /translation="MTQKIIIRKGTKSELINYGALDLGELGFCTDTKEVYVGDGTLNF + LVGAALKGTLANRPEPSTSGRFYFVISGDDRGTLYYDDGSTWYKINNNSVGELKGTLD + DIKDGINYKKVRAEDITEGHVNRVSDGKNTKTAAEIKEHIDNPEIHRKINDSGLAATD + LWSAQKIKTEIFSAIKGLDWQDSVKSLNVKTVPANPQTHDRYIISADAEGLFSGKEGQ + IADWNGFSWDFYVPSTGWAAYVEDQNKNYTYNLSNQWVVTGGANQTIEAGKGLQGGGS + LDTITIDVGAGNGVEVNDDSVSVKPYRGINVDKNGVSVNIDNDSIIFDDENGYTLTIG + KIDGGSF" + gene 1347858..1348061 + /locus_tag="Ccel_1096" + CDS 1347858..1348061 + /locus_tag="Ccel_1096" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75455.1" + /translation="MENNKTLICIRRGTKSELKEIVLQEGELGFTTDTHELYIGSDCG + NLLLSKGKRKRKNSDKEKKSEGC" + gene 1348153..1352826 + /locus_tag="Ccel_1097" + CDS 1348153..1352826 + /locus_tag="Ccel_1097" + /inference="protein motif:PFAM:PF01344" + /note="PFAM: PKD domain containing protein; NHL repeat + containing protein; Fibronectin type III domain protein; + Kelch repeat-containing protein; Two component regulator + propeller; Kelch repeat protein; + KEGG: csc:Csac_0278 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Kelch repeat-containing protein" + /protein_id="ACL75456.1" + /db_xref="InterPro:IPR000601" + /db_xref="InterPro:IPR001258" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR003961" + /db_xref="InterPro:IPR006652" + /db_xref="InterPro:IPR011110" + /db_xref="InterPro:IPR011498" + /translation="MRRVISAFIAVVFILVSLFSGITNVMAQQNIDDAINSAGNWLMS + SQNTDGSWGETTETKSRITSKVVETLNKSGLIPQNSQNGMGWLTSNPPQNNTDLARYL + SVAGLDTANRIAEIISSQAEFGGWGTVNGGATDNLTTCLIASVLMKRDGYTKEVTKAA + YNLLSNQNPDGSWGMVKGTNTGSTELTGLVRSFLTEYQSRTRINMSVELQKAAEWLIA + HRYADKSWGSIEATYLAFLGLCKDKPELVSNIPDYFMSKQTSNGSWNNNPYDTALAVD + LLYRVNLQSAAGINDIKLYSNGVTTESFSPKDQVEIVPEYTGRSIQVYATVISPDGLR + INLSPNAIGGFSWDCSISTEGIYQAEVVLKDNQGEIKAIKTKQFNIKPILEIRGCEIE + ITPGACVINKPVKPQLDFYINCNAANISKPVKATVSVLDPNGYEIYTQEASSILKTGE + NTISLGSFLPAVTNPSEYKVKAVLYYDGKELYTRNDSFQVLDTVNSTYTTNADFDLGT + LKGVNHTEVPDQLQLNKYAEIFPYIWIANAGEGTVSKIDTRTGMEVARYRTGSTTGTS + PSRTAVDKDGNCWVGNRGNGTVIKIAMTGGIDKNKNGKIETSTDLNGNGKIDTNEILP + WGQDEAILVSKSVGNSSESLPRAVAIDKNNRIWVGLYNEKRFVVLNPDDGNFTGISVA + TVSPPYGAVIDKDGVLWSSGNGTPLRIDSLDTNTNTFLKSYDVGRGPYGIVVDKNGIV + WAACPTKDSNDRSALIRLNPSTGTYTYHYGNGNVGRGVAVDRDGNIWMACSGNNWVDK + FDSTGKYLLSVNIGASGGSVPIGVGVDSEGYVWVTCNSSNNTFKINTSGKIIGSYAVG + AGPYTYSDMTGYNLQNVTAHDGAWVVTHDGGNEQNTWSNVSWDQVMPENTAIAVSVKA + ANTIEELVGKTFIAISNGIPISNVSGRFLMIEAKLSTANSASPIIKELRIEGKKGVLT + ANAGEDMNIKASPGAIDADVTLDGSKSSDPDGNKLTYKWSWNNGTETAEGIHPTIKLP + VGTTEVSLVVNNGLRNSEPDTIRVTVTEFSVPDDKPQKPENFKAEVTGGTEIYVSWSP + SLNSTFYELEVDGSIINTKNITSYLHNGLIPGSTHKYRVRAVNSKGFSDWTDTISAST + VDYAAEIDRILKEVEAKLPDLKYSEIIQKTQDLLDSAKKLMPKVNAGQLKDSLQARID + KAQDAIIVAGIDVKLTVLENILPNISSLEPIKKALDEVQLDVNNLPARLDKQRNQFQL + RIDEILKHFSNQWYSEPSMESSKSKAAVINVNGKIYAIGGIKSDGVLLDTIEEYNPET + KTWITKTSMPGGPRQGMAVAAKDGNIYVIGGKVGSKYLGLVEMYNTMTDKWTKMADMP + TIRQGAVAANVNGKIYVIGGSNSTKYFRNVEEYDPVNNRWSTVSKTPMPTARDTAGVA + VVNGEIYVVGGFNSTNKFLNCVESYNPAEDKWETKTSLNVARRALGVCQLNNIIYAIG + GRNNEGDLGVVEVLDPITGTWKEKTEMSMKRSYLSIVPINSSIYALGGTYNEKPVNTV + EQFIP" + gene 1353277..1355241 + /locus_tag="Ccel_1098" + CDS 1353277..1355241 + /locus_tag="Ccel_1098" + /inference="protein motif:TFAM:TIGR00398" + /note="TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA + synthetase, beta subunit; + PFAM: t-RNA-binding domain protein; tRNA synthetase class + I (M); + KEGG: cpy:Cphy_0025 methionyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="methionyl-tRNA synthetase" + /protein_id="ACL75457.1" + /db_xref="InterPro:IPR002304" + /db_xref="InterPro:IPR002547" + /db_xref="InterPro:IPR004495" + /db_xref="InterPro:IPR014758" + /db_xref="InterPro:IPR015413" + /translation="MSKKPYYLTTAIAYTSSKPHIGNTFEIVLADSFARFKRMQGYDV + RFQTGTDEHGQKIELKAKEAGISPKEYVDGFAKEIQRICDLMNTSYDKFIRTTDDYHE + KQVQKIFKKLYEQGDIYKGYYEGMYCTPCEAFFTSSQLVDGKCPDCGRECHPAKEEAY + FLKLSKYADRLIQHINEHPEFIQPESRKNEMMNNFLLAGLQDLCVSRTSFKWGIPVDF + DDKHVVYVWIDALSNYITGLGFDADGNSDEMFNKFWPADLHLIGKDILRFHTIYWPIM + LMALEVPLPKQVFGHPWLLMGNGKMSKSKGNVIYADELVDIFGVDAVRYYILHDMPFD + NDGVISWELITERINSDLANVLGNLVNRVIAMTNKYFSGVVNNSNVREDIDNELIELT + LKTPETVVEKMDKLRVADALSEIFTLFKRCNKYIDETMPWILAKDEAKKARLETVLYN + LVEGIVTGASLLEAFMPETAQKIVAQLNTTVRPLKDMKVFGQYKSGTKVTENPEILFL + RMDIKDILEKAGQKEEPETTPEPAAEEKNENVINIEPKEEITYDDFMKMQFQVGEIVE + CAEVPKSKKLLCSQVKIGGQTRQIVSGIKKHYTPEQMVGKKVMVLVNLKPIKLAGVLS + EGMLLCAEEENGELALMVPEKTMPSGAEIR" + gene 1355760..1357187 + /locus_tag="Ccel_1099" + CDS 1355760..1357187 + /locus_tag="Ccel_1099" + /inference="protein motif:PFAM:PF00150" + /note="PFAM: glycoside hydrolase family 5; cellulosome + protein dockerin type I; + KEGG: cpy:Cphy_2058 cellulase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 5" + /protein_id="ACL75458.1" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR001680" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKTTAFLLCFLMIFTALLPMQNANAYDASLIPNLQIPQKNIPN + NDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNT + VRIPVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSS + QYMASSKKYITSVWAQIAARFANYDEHLIFEGMNEPRLVGHANEWWPELTNSDVVDSI + NCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPNDISGNNNKIIV + SVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECG + AVDKNNLKTRVEYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEI + IDGMVKYAFEAKTDPDPVIVYGDYNNDGNVDALDFAGLKKYIMAADHAYVKNLDVNLD + NEVNAFDLAILKKYLLGMVSKLPSN" + gene 1357396..1357866 + /locus_tag="Ccel_1100" + CDS 1357396..1357866 + /locus_tag="Ccel_1100" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpr:CPR_0657 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75459.1" + /translation="MIESGKEFIMENVLSLRKKMTQKELDNQLEKIGEFLQNNGATQA + GPIVTVTFGIETKEREPLLDMEILVPMDKELELSGDYVFKPLFRITNAVYARHKGNPA + DLQRTYNEMILFIQENNLQQITVGYNVLINEPMPGLTLDDMIIDVYIGINPNIL" + gene complement(1358085..1359950) + /locus_tag="Ccel_1101" + CDS complement(1358085..1359950) + /locus_tag="Ccel_1101" + /inference="protein motif:PFAM:PF08757" + /note="PFAM: cellulosome protein dockerin type I; Spore + coat protein CotH; + KEGG: scl:sce0771 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Spore coat protein CotH" + /protein_id="ACL75460.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR014867" + /translation="MKKSRLLLLLSAIALVTCLFSMSFVGAATVYGDLNSDSSVDSID + YSIMKGYLFGSVTISNPAAADVNGDGNIDAIDLALMKQYILHIITKFPADNNTTPGDN + TPAAQLTGDIVFSAPSGTFSNQVSVSLNSKIAGAQIRYTVDGSVPTASSPAYTSPLSF + TRTTQLRAQSFVNGTPSGKMGTAIYVSSAIDTKHDLPVLILDAYGGGKPAREYKDVAI + MLMEPKNNEVSLLQTPTVATRAGFHVRGQSSANFEKTPYRLELWDNQNEDAKYSLLGM + PGDGDWALLSPFPDKSLIRNALAYELGTTMGLKAPRYRFVEVYLNLDNQPLSSADYQG + VYLLTETLEIDKDRVNIKKLKDDDLTEPNITGGYLMQFNMMATDGPLVKGSGWNDLEI + KDPDDLLPQQLTWISNYIQKVHNSIRSTNPSDPTTGYPAYIDVDSFINYIIENELARE + GDSYMRSTYIYKDRGAKLAAGPVWDYDLGYNCVTGMMGMQTNYVEGWQFQPMFGMSST + CDWYYKLMQDSAFQSKISARWQELRNGPLSDTQIKALVQKLTTPLANGAKRNFQKWNN + LGTATVGGFSTQTTQTWEEQVTILQNFLLQRAAWLDKSGWKPTTNTNPGWPGWGG" + gene 1360523..1361305 + /locus_tag="Ccel_1102" + CDS 1360523..1361305 + /locus_tag="Ccel_1102" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: bfs:BF1698 putative ferredoxin" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL75461.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MIFWFSGTGNSFYTAKSIAQQNDLKLISISAAVNSGADIYEYAL + EDGEIIGFVFPVYAWAPPKMVLDFISKLKLKNYSSNYTFCVPTCGRNVGNTVKVMEKC + LNKININLSAGFSIIMPNNYIVIGNVDSKDKESQKLAQAEKTLKNISQIISERKTGMF + NVIKGPFPRLFTVVNPLFNKYAVKTESFYATDKCNGCGICEKVCTSKSIKVDKRPKWG + KECTQCLACINFCPTKATQFGKGTEKKGRYTNPNVRISELSE" + gene 1361466..1361822 + /locus_tag="Ccel_1103" + CDS 1361466..1361822 + /locus_tag="Ccel_1103" + /inference="protein motif:PFAM:PF03551" + /note="PFAM: transcriptional regulator PadR family + protein; + KEGG: ckl:CKL_2542 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, PadR-like family" + /protein_id="ACL75462.1" + /db_xref="InterPro:IPR005149" + /translation="MESTDDILSSLVVELRRGTLVLSVLSQLFNPEYGYSLVQKLEQK + NNPIDAGTLYPLLRRLEKQQLLVSNWDTSEARPRKFYVISEEGKKVFQCLKEEWRTMS + GNLENLLEEERDYGDD" + gene 1361809..1362780 + /locus_tag="Ccel_1104" + CDS 1361809..1362780 + /locus_tag="Ccel_1104" + /inference="similar to AA sequence:KEGG:BcerKBAB4_2612" + /note="KEGG: bwe:BcerKBAB4_2612 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75463.1" + /translation="MEMIDRYIYAVTQHLPENIREDVSKELRSNIQDMLPEDASNDQI + REVLEELGNPIKLAVEYNPKSRYLIGPSIYNQYITILKLVTGIAALTMGCIAIFTWLF + NPVDVQKTASVIANIISAFFEGALQGAFWVTLVFVIMERSGVHEGNSPFTKKKWTLKD + LPDIPDYGKKKISRVSTTAEIFFTVIVTVVLIFRPGVIGVSLNGSQFVPILNADRLNT + YIIGIVLFGVVSLGILVWKTIYPYWIIPLAAANAGFNIATAVFMLFMVRDRHMVNGEF + LNLLESLTKLTLPQVTLIWQRGLWVFAAVIIMIAICDSIAGVFKCKR" + gene 1363354..1363956 + /locus_tag="Ccel_1105" + CDS 1363354..1363956 + /locus_tag="Ccel_1105" + /inference="protein motif:PFAM:PF07484" + /note="PFAM: Tail Collar domain protein; + KEGG: bra:BRADO4738 phage-like protein" + /codon_start=1 + /transl_table=11 + /product="Tail Collar domain protein" + /protein_id="ACL75464.1" + /db_xref="InterPro:IPR011083" + /translation="MASTERMPIGSVISFAGEIKSEMVNRLYRMGWLICDGSKLKIAE + YPDLFQAIGKAHGGDNTYFYLPDTQSKFIRGVNGDSVGESGRLMDPDVAKRTFAKPGG + NTGNNVGSYQDFATGLPKVSLTTDFIGSHTHSLPHLPDGSHNAYAGSIGRDGGKEAGD + NTRTGESGSHSHEIIGGGDPETRPRNMNLHFIIKFSKDSK" + gene 1363980..1365086 + /locus_tag="Ccel_1106" + CDS 1363980..1365086 + /locus_tag="Ccel_1106" + /inference="protein motif:PFAM:PF07484" + /note="PFAM: Tail Collar domain protein; + KEGG: bra:BRADO4738 phage-like protein" + /codon_start=1 + /transl_table=11 + /product="Tail Collar domain protein" + /protein_id="ACL75465.1" + /db_xref="InterPro:IPR011083" + /translation="MPLKFPVGMVIPFAGPLKEDQLKSSGWVPCDGRVLDKTQYSELF + DVIGTKYGGDGIPNFNIPDLRGRFVRATDHGRGYDPDAQRRKASKSGGAAGDNTGSVQ + EYATAKPKNNFITNDKGNHNHLVDHLPTDYWNAACAITSNEGANFPGRTATSGEAGQH + SHTIVSGGDSESRPVNLYMYWIIKFTSSDYDESILLPAGSIVSFAGDSVKKSNELIAN + GWLPCIGSSYEANKYPDLYENISNIYGGDQNKFNVPDLRGLFIRGVNSNTSETPGVHG + ATRVGQTEDYSTALPKTLNFTLSTDGAHTHSAPKLPQDKYIENYCAGHEVANFPSNQY + TGNNGNHAHTIAGGDAETRPVNIYLDYIIKSSNV" + gene 1365331..1366320 + /locus_tag="Ccel_1107" + CDS 1365331..1366320 + /locus_tag="Ccel_1107" + /inference="protein motif:PFAM:PF00724" + /note="PFAM: NADH:flavin oxidoreductase/NADH oxidase; + KEGG: ckl:CKL_0344 NADH oxidase" + /codon_start=1 + /transl_table=11 + /product="NADH:flavin oxidoreductase/NADH oxidase" + /protein_id="ACL75466.1" + /db_xref="InterPro:IPR001155" + /translation="MELLHKPLSIGALKLSNRLVMPPMATAKSEDDGKVSQDIIDYYD + EKSKGGHIGLVIIEHSYISKEGKASSNQLSIADDSVIENLKNLSDVIHRNGSKAIMQI + NHAGSATSAEITGSSPVGPSTVPHPRNPNVIPRELSKDEIKDIISSFANAAERVKKAG + FDGVEIHSAHGYLLSQFFSPISNKRSDEYGGNVLSRIKIHLQIINAVKKAVGEDFTVF + LRLGASDYMEGGITIEDSLIATGEFEKAGVSALDISGGFCGYIKPDAKEQGYFWPLTK + AIKEHVSIPVILTGGITDAESAEQLLAGGKADLIGVGRSILKDSGWAAHAMGI" + gene 1366360..1366554 + /locus_tag="Ccel_1108" + CDS 1366360..1366554 + /locus_tag="Ccel_1108" + /inference="protein motif:PFAM:PF08984" + /note="PFAM: Domain of unknown function DUF1858; + KEGG: dsy:DSY4252 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Domain of unknown function DUF1858" + /protein_id="ACL75467.1" + /db_xref="InterPro:IPR015077" + /translation="MITKDWTITDIVEKYPKTTEILMNHGMHCFGCMAARFENIEQGA + MAHGINVDELMKELNDAIKE" + gene complement(1366659..1367714) + /locus_tag="Ccel_1109" + CDS complement(1366659..1367714) + /locus_tag="Ccel_1109" + /inference="protein motif:PFAM:PF07854" + /note="PFAM: protein of unknown function DUF1646; + KEGG: tte:TTE0261 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1646" + /protein_id="ACL75468.1" + /db_xref="InterPro:IPR012443" + /translation="MIIGLLIVLALILILPFAFRPIEHNLEYFLLVMGIAATIVSGTL + STGLLLHIFENYLLYFITGAVLVAGLIFRISVGKIKKFVGFATERVPISIFVFLLILV + LGLVSSLITAIIAALILVEIVHALPFKHSQKVKLTVISCFAIGLGSALTPIGEPLSTI + VVSSLKADFTYLFRIIGIYVIPGVFVMAILGAVVARMMHKANQNENVGENSWKDENEG + VLGLESMKSVFVRAIKIFLFIIALELLGSGFKPLINTYVIHLPSMVLYWINVSSAVLD + NATLAAAEVSPAMSLKQIQAILMGLLLSGGMLIPGNIPNIISAGKLGIKSREWAKIGL + PLGLVLLTIYFVILFFV" + gene 1368094..1368461 + /locus_tag="Ccel_1110" + /pseudo + gene 1368575..1369855 + /locus_tag="Ccel_1111" + CDS 1368575..1369855 + /locus_tag="Ccel_1111" + /inference="protein motif:PFAM:PF00704" + /note="PFAM: glycoside hydrolase family 18; + Peptidoglycan-binding LysM; + SMART: chitinase II; + KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 18" + /protein_id="ACL75469.1" + /db_xref="InterPro:IPR001223" + /db_xref="InterPro:IPR002482" + /db_xref="InterPro:IPR011583" + /translation="MRIHVVKSGESIYSIAQQYRVSPQKIISDNELNNPDQLVVGQTL + VILEGTRRHVVAPGESVYSIARSYRISVNELLAANPQISDPSRIQPGMVITIPPVTYN + YGPMEVNGYAFPNIDMEVLRKTLPNLTYLSIFSYQVSPDGNLQSIPDEPLIQAARAAR + VAPLMVITNIKEGGGFDSDIAHSILTNETAQTNLLNNVTRILRQKNYFGLDIDFEYIY + PYDRESYNNFLRRVVRTLRPLGYTITTALAPKTSATQKGKLYEAHDYPVHGALVDHVI + LMTYEWGFTYSAPMAVSPITGVRSVLDYAVTAIPRRKIFMGISNYGYDWTLPYTPGTA + ARTVTNTGAVDLARRRGAEIQYDVISQAPFFYYYADDRKQHVVWFEDARSIFARLTLA + HEYRLGGVSYWTINSYFPQNWLVLSSIFNIRKVL" + gene 1370121..1372130 + /locus_tag="Ccel_1112" + CDS 1370121..1372130 + /locus_tag="Ccel_1112" + /inference="protein motif:PFAM:PF00070" + /note="PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; + KEGG: tte:TTE2486 NADH dehydrogenase, FAD-containing + subunit" + /codon_start=1 + /transl_table=11 + /product="FAD-dependent pyridine nucleotide-disulphide + oxidoreductase" + /protein_id="ACL75470.1" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR001865" + /db_xref="InterPro:IPR013027" + /translation="MKSKILIIGAGYAGILTAKKLAKKFKKNYDVNITIIDKNPFHTM + LTELHEVAANRVDEDSIKISLSKVFAGRKVNVVLDTVESIDFENNTVAGNSGTYDYEY + LVLAAGSKPTYFGVPGAEEFSHKLWSFEDAVNLREHIHNCFRKAATETNLEEKKRLLT + FHVVGAGFTGVEMVGELAEYVPILCEKYEIDRKYVSVYNVDVLTRTVPNLPEKLSNKV + ENRLKKMGVVMMLNNGVVGVGADFIETKNGDKVTRHTAGTVIWAAGIESSDITNKAAN + TLQSAARGRIKLDKYLRSIDNDHVYVVGDNMLYIPEGEERPVPQMVENCEQSAAVAAK + NICSAITGKGEMTVYKPSFHGMMVCIGGRYGVARVGLPKFMFNLPSFLAMFAKHFINI + IYFIQVLGWNKIFSYIKHEFFTIRNCRSFVGGHFSNRTPSFLLVALRVWLGAVWLFEG + IMKIVGGWFNKPQLKGFFGGANGWYDSILKGATDGTSSAPAKAGAAVAEAVSSATTAG + GGEAVAEGINQIGTTIINFDFLNLFRVIFVSGKQIAESTLSDFAFRLDIPLMNTFVNK + VILANDSIQMFMQISIVIAEILIGLALIGGLFTTPASAVSLILQFMFVCTTGLYLGTF + WMIFAGIAVLIGAGRTFGLDYYVMPFLKRQWKKIPIVRKWYIYND" + gene 1372178..1373083 + /locus_tag="Ccel_1113" + CDS 1372178..1373083 + /locus_tag="Ccel_1113" + /inference="protein motif:PFAM:PF01040" + /note="PFAM: UbiA prenyltransferase; + KEGG: lwe:lwe2585 1,4-dihydroxy-2-naphthoate + octaprenyltransferase" + /codon_start=1 + /transl_table=11 + /product="UbiA prenyltransferase" + /protein_id="ACL75471.1" + /db_xref="InterPro:IPR000537" + /translation="MVIGTFLNYVEIKTKITSTFAFLITIAYLFYIGNPVNWKLTLIF + FLAMFIFDLTTTAINNYIDTKTNHQSLGFKRETALAIIFVMLGISTALGLYLAYLSDF + VVLLIGAVCFMCGILYTFGPIPISRQPLGEIFSGLFYGLLIPFILLYINLPKGTLINL + SVNFTAINLNVNIIPTLTIILLSIPPVCTTANIMLANNICDLERDIMVKRFTLPFYLG + RKAVYLFAGLYYLVYFDIILMVVLGKLPVVCLLSLITVYPVQKNINLFFKEQDKATTF + IVSIKNYVLIMGSISLLIFIGGLFF" + gene 1373103..1373495 + /locus_tag="Ccel_1114" + CDS 1373103..1373495 + /locus_tag="Ccel_1114" + /inference="protein motif:PFAM:PF07009" + /note="PFAM: protein of unknown function DUF1312; + KEGG: cdf:CD2482 putative lipoprotein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1312" + /protein_id="ACL75472.1" + /db_xref="InterPro:IPR010739" + /translation="MNFAKKSDILIILIILLSGGALWTVYNSFFSSKPAKAEIYYKSE + LVQTVVLEKGKDKTFSIPQREHVIFRLAPDGRIRFEDSDCPDKVCIKTGWLDKVGQTS + ACLPNEVFLKIVPQNNNRSENDIDMIVK" + gene 1373534..1374034 + /locus_tag="Ccel_1115" + CDS 1373534..1374034 + /locus_tag="Ccel_1115" + /inference="protein motif:PFAM:PF07456" + /note="PFAM: Heptaprenyl diphosphate synthase component I; + KEGG: cno:NT01CX_0720 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Heptaprenyl diphosphate synthase component I" + /protein_id="ACL75473.1" + /db_xref="InterPro:IPR010898" + /translation="MTKIKQLVLTALLFAVALVLSVVENSFPPISAGIPGIKLGLSNI + AVMFALFFLYKRQALTIAVLKALFVLSTRGPVAGLLSLGGGALSIAVMSLMLLIFKER + ISYLILSILGSVSHNAGQFIIISILYTNMYLWVYLPVLLVAGVIAGIATSALLRFILP + ALNKLV" + gene 1374073..1375137 + /locus_tag="Ccel_1116" + CDS 1374073..1375137 + /locus_tag="Ccel_1116" + /inference="similar to AA sequence:KEGG:Clos_0885" + /note="KEGG: aoe:Clos_0885 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75474.1" + /translation="MKKIISLVMSSVLAVSLLAGCGSSSETSNSTNSAAPSSAAASSE + ANGDAVKTGLAVMSSIAKSKDAENEDGLAQVDSTIVAVTVDKDGKIVKCAIDAAQTKI + NFSAAGKIITDLNTEFKSKQQLKIEYGMNKASKIGKEWNEQADAFANYVVGKTVDEVK + GIAVNAEGVPSDKELSATVSIHIADFTAAIEKAVNNAKDLGAKAGDKLGLGVTTNISK + SADAGEKDGVAQAYSNYSATTFDADGKVTSCIIDASQSDVNFSKTGKITSDLKAPLRT + KIELGADYGLVKASKIKKEWFEQTEALAKYAVGKTIDEIKGIAVNEEGVPSQAELTSS + VTIHIGDYQTVIEKAVATAK" + gene 1375285..1376337 + /locus_tag="Ccel_1117" + CDS 1375285..1376337 + /locus_tag="Ccel_1117" + /inference="protein motif:PFAM:PF02424" + /note="PFAM: ApbE family lipoprotein; + KEGG: aoe:Clos_0889 ApbE family lipoprotein" + /codon_start=1 + /transl_table=11 + /product="ApbE family lipoprotein" + /protein_id="ACL75475.1" + /db_xref="InterPro:IPR003374" + /translation="MNMLKKLTTILLVLAFPINLSACGENQKTRYEAEFLTLFDTETK + IVAYAESKEEFTRYSQLIYDSLKEYHELYDIYHDYPGKNNIKTINDNAGIKPVKVDKK + IIDLLLFAKDWYEKTDSKMNIAFGSVLKIWHDYRTTGEDDVENAKIPPMDELKEAAQH + TNINKVKIDEKNSTVYLEDPKMSLDVGAVGKGYATEQASHTAFENGFKSGLISVGGNI + RSIGNKGVDGQLWNLGIQNPDTESENSTLKLIYVADKSVVSSGDYERYYTVNGKRYHH + IIDPNTLLPSEHFSAVTIVTKDSGIADVLSTAIFNMPYEQGLALIDSLSDTEALWVMK + DGEIKYSKSFDKYLNK" + gene 1376430..1377650 + /locus_tag="Ccel_1118" + CDS 1376430..1377650 + /locus_tag="Ccel_1118" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: ckl:CKL_2256 transporter protein" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL75476.1" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MSDNWKKNIILFLTGQTISLLGSSLVQYAIIWYVTINTQSGIMM + TISIICGFVPTFFLSPFAGVWADRYNRKVLIMVSDSLIALATLIMAILFMAGYDSMWL + LFVVLAIRALGTAVQTPTVGALIPQIVPQENLTRVNGINGSIQSLVMLASPVLSGALM + SITSIKSIFFIDVFTAVIGIMVLLLFVHVPLHVKALDKQSFSYFKDFYEGLIYTRNHK + YLKTFFLYVGAFLVLVSPAAFLTPLQVTRTFGNDVWRLTAIEIVFSVGMSLGGIFMAS + WGGFKNKAYTMAISILITGICTFTLGIVPGFWIYLVFMSIIGFSMPVFNIPSTVLLQE + KVDEEYMGRVFGVLTMITSSMMPAGMLLFGPLADYIRIEWMLIVTGLLIIIIGIALYL + NKILIEAGKPEIEI" + gene 1377950..1379869 + /locus_tag="Ccel_1119" + CDS 1377950..1379869 + /locus_tag="Ccel_1119" + /inference="protein motif:TFAM:TIGR01273" + /note="TIGRFAM: arginine decarboxylase; + PFAM: Orn/DAP/Arg decarboxylase 2; + KEGG: dvl:Dvul_2517 arginine decarboxylase" + /codon_start=1 + /transl_table=11 + /product="arginine decarboxylase" + /protein_id="ACL75477.1" + /db_xref="InterPro:IPR000183" + /db_xref="InterPro:IPR002985" + /translation="MNKAELLGRWTKEKSEELYGIKNWGAGYFSISDNGEVLVNPYKD + NGSAAVSLMDIISGVRERGLDMPVLLRFENLLDSQISFLNNSFNEAMHKLNYKGAYRG + VYPIKVNQQQQVVEEVTRFGQRYHHGLEVGSKAELVAALSVMKDKEACLICNGYKDEE + FVDLGLYSVKMGFKCFFVIEIPGELDIVLERSRALGVKPNIGIRIKLSAKAGGHWTES + GGDRSIFGLNMSQVISMVDRLKAEGMLDSLKLLHYHLGSQIPNIRDIRSAVLEAARVY + AELVKEGAPMGYLDLGGGLAVDYDGSNTNYTNSRNYTVEEYCSDIVEAVMTTLDSSDV + PHPVIVTESGRTTVAYYSVLIFNVLDIEKFEEHDIPDKLDENTSEQIRNLFDVNKSIT + LKNIQECYNDALYYRDEIRDMFKHGRISLRERAFSEKIFWNTINQIAKEKQKLKNAPP + DLEDIESAIADIYYCNFSVFQSIPDSWAIDQLFPIMPLHRLLELPKRNAVIADITCDC + DGKIDHFIDLHDVRTTLPLHEFKNDQDYYLGVFLVGAYQETLGDLHNLFGDTNVVSVR + INGDGTYDFVKEIHGDSVSDVLSYVEFDPKSMLISFREKAEQAIHEGLISASERPEIM + RAYDNGLRGYTYYER" + gene 1380078..1380794 + /locus_tag="Ccel_1120" + CDS 1380078..1380794 + /locus_tag="Ccel_1120" + /inference="protein motif:PFAM:PF08867" + /note="PFAM: FRG domain protein; + KEGG: hne:HNE_3339 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="FRG domain protein" + /protein_id="ACL75478.1" + /db_xref="InterPro:IPR014966" + /translation="MNSIHATKITTIEEYLMLPSIARSSINVEYETIYLSKFKSKAIP + YLGQLPSYPFSEGLHGYWDWLFLMQHYGVPTRLMDWSEDALVALLFAIDVNARPAELE + KDPAVWCLNPVSLNEAFNFHDFYPPGYIPNVEEKEVYEMFGPVQRGFNNKKPAAVYGP + LNSTRIVAQKGVFTIFPYTVNMIEFDKLPDSEAYLEKLVISKDARKSMTEQLRRYGIN + YAQLFPEIGYVAAEINEEGY" + gene complement(1381046..1381411) + /locus_tag="Ccel_1121" + CDS complement(1381046..1381411) + /locus_tag="Ccel_1121" + /inference="similar to AA sequence:KEGG:CAC1520" + /note="KEGG: cac:CAC1520 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75479.1" + /translation="MRKFLVITIPIVTLVLFILVMESDIFLKRPLGNHDSIPKSINTI + INDIQKDDWDKAAKDTGNLSEVWKKIVKRVQFSSERDEINAFSINLARLRGSILAKDK + AGAFTELYEAYEHWEDLGK" + gene complement(1381426..1382154) + /locus_tag="Ccel_1122" + CDS complement(1381426..1382154) + /locus_tag="Ccel_1122" + /inference="protein motif:PFAM:PF04239" + /note="PFAM: protein of unknown function DUF421; + KEGG: cbe:Cbei_2942 protein of unknown function DUF421" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF421" + /protein_id="ACL75480.1" + /db_xref="InterPro:IPR007353" + /translation="MNEGLVVFVRSLLSFFSLLIFTRILGKEQISQLTFFDYILGITI + GSIAASLSTDLSSRSWPHWIGLITWAALGLLLEYITLKWRYVAKYLENEPTIVIMNGK + IMEKTLKKMRFRVSDITELLRNKDIFDLTEVDFAIIEPNGQLSVLKKPEYQNLTPKDM + YIQKKASGISSELIYDGILIEENLRQLDKDKNWLLNELKKQGITDISDVFIATLNPSG + SLYIDLYNDHMTKITDIGDYKGPY" + gene 1382250..1382621 + /locus_tag="Ccel_1123" + CDS 1382250..1382621 + /locus_tag="Ccel_1123" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cdf:CD1788 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75481.1" + /translation="MLIGADIRRKLTFVWLVLFLLMWIVFTVCFKTETMRSQLEAVEQ + AVTNKEWARAEKETEKFTATYNARKYFIAINNSTEINITFNHTVEQLYIAVKNKQDSA + MEYTGLLKASLGYAVRPFAEP" + gene 1382653..1383324 + /locus_tag="Ccel_1124" + CDS 1382653..1383324 + /locus_tag="Ccel_1124" + /inference="protein motif:PFAM:PF04239" + /note="PFAM: protein of unknown function DUF421; + KEGG: bsu:BSU13060 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF421" + /protein_id="ACL75482.1" + /db_xref="InterPro:IPR007353" + /translation="MQTVLIYSVRVVLVYFFTYLSTRILTKKAIAQMTAYEIAGLMVI + GNVAAEPLVDKVMVKSVYGTGLLILLMLITSRIAVADRFTKIMEHSASVVVNNGQIDF + HEIKRLRISLNVLLGMIRQQGFDRVSDIEAAVLEPNGTLSVFAKSHDKPVTKRDMNIN + VPGKPISMPLIMNGRIVHENLEYVGRSEIWLVEELQKQGIKDYVHEVFLAELDSSWNV + IVYRK" + gene 1383418..1384383 + /locus_tag="Ccel_1125" + CDS 1383418..1384383 + /locus_tag="Ccel_1125" + /inference="protein motif:PFAM:PF01408" + /note="PFAM: Semialdehyde dehydrogenase NAD - binding; + oxidoreductase domain protein; Oxidoreductase domain; + homoserine dehydrogenase NAD-binding; + KEGG: cac:CAC1480 dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="oxidoreductase domain protein" + /protein_id="ACL75483.1" + /db_xref="InterPro:IPR000534" + /db_xref="InterPro:IPR000683" + /db_xref="InterPro:IPR004104" + /db_xref="InterPro:IPR005106" + /translation="MSVRYGIIGLGGIAQVFAGALKAVQNAELTAVASSSRERAESFS + RKFNTAKIYDSYTELILDKDVDVVYVALTHNFHYDIVKKCIENGKAVLCEKPLTTNRK + NAEELIALSRKKKVLLMEAMWTRCLPSFQKAKKWVDEGRIGDVRLIDAKFCFNAPYDP + KHRLFNPELAGGSLYDTGVYVIEFTTGILGEKPEKVSGFATIADTGVDDFAVINMTFK + RGTLAMLSCGTRANVNKDARIYGTNGNIVVYEFFSSRKCELYDNDNNLVESFEDNCRD + GFIHQIRHFSNLFESGKLESDIIPLEDTAACAEVFDELLKQWRIV" + gene 1384490..1385368 + /locus_tag="Ccel_1126" + CDS 1384490..1385368 + /locus_tag="Ccel_1126" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: nmr:Nmar_0998 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL75484.1" + /db_xref="InterPro:IPR012854" + /translation="MKIKKILVGSMAFAVFVTSSVMPGILANSSDIPTAYVTAKKGNS + GNDDKNLKKASQKELKEQRKKERDAQKAAIRASYSSDELANLKIAGEKIKKNNKNVAV + LPVENIIVKGVKVKFDTPPVIKSGRTLIPVKALSEAFGAEVKWISAERKVVITKDSTE + IVLQLDNNKIYVNGVESTIDVPACSINGRTVVPIKFIVEKMGLLVKWDSDSQVVEIEN + PTPTTPAEPTTPAEPTTPAEPTTPAEPTTPAEPTTPAEPTTPAEPTTPAEPTTPAEPT + TPAEPTTPAEPTTPGQ" + gene 1385426..1385620 + /locus_tag="Ccel_1127" + CDS 1385426..1385620 + /locus_tag="Ccel_1127" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75485.1" + /translation="MDTKQLYKDMETLRERLNLELEACLENGGMTLEVLDLSQKLDDL + IVAYMRLDKPQTNIESNEVA" + gene 1385865..1387064 + /locus_tag="Ccel_1128" + CDS 1385865..1387064 + /locus_tag="Ccel_1128" + /inference="protein motif:PFAM:PF03435" + /note="PFAM: Saccharopine dehydrogenase; + KEGG: cbe:Cbei_4409 saccharopine dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Saccharopine dehydrogenase" + /protein_id="ACL75486.1" + /db_xref="InterPro:IPR005097" + /translation="MGKALIIGAGGVANVVIHKCCQNPDVFEEICIASRTLDKCEAIK + NKLTGSKTVIQTAQVDADNTDMLINLINKFRPDIVINVALPYQDLTIMDACLATGVHY + LDTANYEPPEIPKFEYKWQWAYRDKFEKAGITALLGSGFDPGVTSVFCAYAQKHYFDE + IHYIDIVDANAGDHGYPFATNFNPEINIREITAKGSYWEKGNWVETEPLELKRVYNLP + EIGPKDIYLLHHEEIESLALNIKGVKRIRFWMTFSEKYLTHLRVLENVGMTSIEPIDF + EGKKIIPLQFLKAVLPDPASLGPRTKGKTNIGCIIQGVKDGKPRTYYVYNVCVHEECY + AEVGSQAISYTTGVPAMIGAMMILKGIWKGPGVFNIEEFDPDPFMEELNRCGLPWKES + FAPGLID" + gene 1387179..1388327 + /locus_tag="Ccel_1129" + CDS 1387179..1388327 + /locus_tag="Ccel_1129" + /inference="protein motif:TFAM:TIGR01047" + /note="TIGRFAM: carboxynorspermidine decarboxylase; + PFAM: Orn/DAP/Arg decarboxylase 2; + KEGG: dsy:DSY3820 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="carboxynorspermidine decarboxylase" + /protein_id="ACL75487.1" + /db_xref="InterPro:IPR000183" + /db_xref="InterPro:IPR005730" + /translation="MIKNLDIDIKSLPTPCYIVDERLLIKNLEILDSVQKRTGCKILL + AQKGFSMHSVYPLVGKYLAGVTSSSLFEAKLGYEKMGKEVHIYAPAYIEEEFDEIMKY + SDHIVFNSFHQWNKYKDKVRTSTKKISFGIRINPEYSELEHPIYDPCYKFSRLGVTLP + NFKPEGLDGIEGLHFHTMCEQNSDTLERTIKVVDEKFGRYIKDMKWLNFGGGHHITRP + DYDMEALVRSINYFQDKYGVSVYLEPGEAVALNTGYLVAKVLDIVENEMNIAILDTSA + ACHMPDVIEMPYRPNIIGAGKPDENPHTYRLGGHTCLAGDIIGDYSFVQNLKPGDRLV + FCDMAHYTMVKNNTFNGVNLPAIALYNEKEGIRIIKQFGYEDFENRLS" + gene 1388593..1389645 + /locus_tag="Ccel_1130" + CDS 1388593..1389645 + /locus_tag="Ccel_1130" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: pth:PTH_1215 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75488.1" + /translation="MRILRKSIIFLIIFLLSTEIIFVYAFPARYVYNQRINYDVFKDN + VYSIELSVKSIKQTISREKIKNYYIFIGDSVGYGTPCPPEKTISSYLNIISKKEHKDI + RFFNLALPSTMFGDFYTVLLLLEKYDVSIDNVILNFSYWEINAKTPTYWFKHYLKELD + SNSYNKMVELGAIKEDSLWKSTKAEIYHFANKNIGIIGNSGFITNKIKSITNSLLKES + KPALSVWSSKTDLKKAMSKPENRWYFSDKKFNLTENSVQIYFINKIIELQKDKNIIFI + LNATNNKLLEDETSKQGYQDNINAIEKLFNDKNANFLNYNNKVDYKLFSDHVHLLPDG + YSFIAQDLWNKIDKEI" + gene 1389648..1392931 + /locus_tag="Ccel_1131" + /pseudo + gene 1390659..1391942 + /locus_tag="Ccel_1132" + CDS 1390659..1391942 + /locus_tag="Ccel_1132" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75489.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 1393138..1394493 + /locus_tag="Ccel_1133" + CDS 1393138..1394493 + /locus_tag="Ccel_1133" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cbe:Cbei_4680 extracellular solute-binding protein, + family 1" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75490.1" + /db_xref="InterPro:IPR006059" + /translation="MKKVIGKTLSAALALAMTVSIAACGSGNQSESSSSSAAGSSSSA + VATNTAASGDPVKFTLWHVQTTDPMPTNIQSDIDRFTKDNPKYSVDVQVMQNDAYKTK + LKIALSSNTAPDIFFSWSGGPMNEYVDADKIVDLTPYMNKDDYKGRFMDASINQATYK + DKIWGVPVENTAVAMFFYNKDLFAKYNLQVPKTIIELEAVSDTLKKNGIIPFSLANKT + QWTGSMYYMYLVDRIGGADAFNNAAGRTGSFEDDAFTQAGNIIQDWVKKDYFNKGFNG + LDEDSGQSRTLLYTEKAAMTLMGSWFLSTAAGENKDFMKKVGSFPFPAYEGGKGDANS + VVGTVGDNFYHIAKTCKDPEGAFKAIQYMIDETAVQKRIEAGRVPPVKGVKVSDPLLQ + NVLDAVEKAPSVQLWYDQYLSPELSDLHKSTSQAIFGLSKTPDQVNKEMEAKAKELAG + K" + gene 1394659..1395561 + /locus_tag="Ccel_1134" + CDS 1394659..1395561 + /locus_tag="Ccel_1134" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cbe:Cbei_4679 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75491.1" + /db_xref="InterPro:IPR000515" + /translation="MQTTQSLAEYRKRSTFTATTIFLLPVFFFILIFIVYPIIDSFWL + SLHEWNGISSGKAFLGLENWKTLMGDKVFFKAFVNNMIIVVLSIAIQLPIAMAIAFML + DTGGKKLNFLKMIYFLPMLMSSVAVGFLFKYTYDPQFGLISAVDTILGGQGMVDVLGD + PNRAIFGVIAVICWQFIPFYMVYFLAALSSLPVEIYEASVIDGASYGQYFWRVALPSM + KGTIKSAAVLSLVGSLKYFDLIYVMTQGGPDGATELMATYMYKNAFTIGKMGYGATVA + SGMFIIITVISLVTLKVINGKQEA" + gene 1395567..1396397 + /locus_tag="Ccel_1135" + CDS 1395567..1396397 + /locus_tag="Ccel_1135" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cbe:Cbei_4678 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75492.1" + /db_xref="InterPro:IPR000515" + /translation="MKKKFKVGKIFVALLALIWLVIAGAPFYFMVASAFKEQFEIFTA + GVFSIPKGLYMQNFKEVLEGDFYVYLFNSLFVVGVSLALILVTSLCASYPFSRFKFKL + NKPLFGLIVAAMAVPIHVTLIPVFQLTQKLNLYDTIFALIGPYTAFNLPISVFILTGF + MAQIPKELEESAEIDGCGKYRTFFNIIAPLSKPGLATLAIYNSVNMWNEFSFALVLTQ + SQKSRTLPLSIWEFQGQYNANIPMIMAVLTLCALPMIVAFAIGQDKLIKGMMAGAVKG + " + gene 1396496..1397791 + /locus_tag="Ccel_1136" + CDS 1396496..1397791 + /locus_tag="Ccel_1136" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: csc:Csac_0692 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75493.1" + /db_xref="InterPro:IPR006059" + /translation="MKKIFKALIILMVVVISGCFYDGDNVLVKSNPPKKQLTLYTIQG + DSSVNQVIADSVYRFEKDNKSFKVINELIPNDLYKNRLSVCVATNQMPDVFPTWSGGI + LKQYISIGGVVNLDKYMKNDNYSSRFNDKALNMVTDENGIWGVPVENMSIALVFYNKD + IFNALKLSEPKTFDELKNIIVKLKQRNYIPFALANRTAWTGSMFYMYFVDRVGGPSVF + DNAANRKNNGSFDDDVFVQAGKMVHELVNMGAFPKGFNWMDEDAGDSRNLLYNNSAGM + LLAGSWFVSNVMYEKPDFAEKIGVFPFPSISGGKGDPRNTIGTLGDNFYSVASSCGYP + DKAFELIKYLIDDTAEKKRIDAGKIPPVKDPDVENPLIKEILGYINQSPNVQFWYDQY + LPPKLSEAHLMLSRSIFGGEDPKKAAEEMEKITKQYYNQ" + gene 1397788..1399581 + /locus_tag="Ccel_1137" + CDS 1397788..1399581 + /locus_tag="Ccel_1137" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: cbe:Cbei_4677 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL75494.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MTGEDMKNWLLQSVKKTIRNLTFRSKITYFLVITICITVLIVVA + CSYNITSRSIKEQAKNMTMQQLEQNTLNLEDYLKNIESTPDNIVNDKSLQEYLSNPDK + DNLEFTAKVDDVYKLMSNILGSKRNILYVYVYKLLNGKELYLGPTKAGNKSDFSTGLQ + YISKNDITGSPMRTSFRKDPVINKEYTLSIYQPIFDVYRIRRPIGILGISVSEDVVAR + FYSHINTNLPLETFIMDGNGIIISHIDKSRIYSDAGLKNMVHKQDGAKEINGKLVVCK + YVKDWDWYVIGTLPIDYLLRDNNVMLLAILIIVVITLIVGIFISYGFSKHLFKPFDEL + IYRMSMVSTGDMETRISFPTYGPDFQQVSQGFNIMVEHIDELMKKIYEEQRQLKEIEF + KALQSQINPHFLYNTLESIHWQALLYGHHDISTMVKALAGFYRISLSKGEDIIPLKNE + SEHVENYMTIQEIRYKDKMESYIDIPEEFYDVKIPKMILQPLVENAIYHGLRGRKAKG + FIKITAERDGDDIIVKTIDNGTGMTVDQICKLNQTLEDNDPSVGYGVRNVHRRIKLFL + GSPYGLYYESNEYGGVTVNVRLRSEIHKNGG" + gene 1399587..1401146 + /locus_tag="Ccel_1138" + CDS 1399587..1401146 + /locus_tag="Ccel_1138" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: cbe:Cbei_4676 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75495.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYKVLIVDDESIIRNGLYNMIPWSDLGVSGVLTASCAKEALKIA + QNTELDIMLTDICMPEMDGLEMTKIMLEIIPDLKVIVLTGYDDFKYAQKSCSLGVKDF + ILKPVDEGSLIKCIKLQIDHIQSELQTEVENNIMSRKRMLENQREFEKSLMKLTEKSL + DQPDVIEVPQCIKFADDCEYQVAVLTPEISENSIWNQHRNLLIMSIKSFFIDLVDAQN + SGWTFQNSDGDIVVIFYVDKKSENAEEQISKLQEIIDVEFDVEMRMGIGPVVQNMSRI + KNSYEIARKKFGVKKPPHDTDNNKHVDDYLNKKDKLLILKEKILASFHDTEAAKEYLK + KYINEVKTSGVSKSVAEQKFYDLASAFYWEYLKTTGNSADGRLETLISTLQTNDLENC + CVFTEMFIVKLMYTNKKQMHEIIEAATVFINKRLTEDLTVFTLAEQFHVARNYFSRLF + KKEMGEGCNEYITRKRIEKAKHLLTVSRLKTYEVAEQVGYNDTNYFSLAFKKNTGMSP + TEFRDRQNNPE" + gene 1401215..1403389 + /locus_tag="Ccel_1139" + CDS 1401215..1403389 + /locus_tag="Ccel_1139" + /inference="protein motif:PFAM:PF00933" + /note="PFAM: glycoside hydrolase family 3 domain protein; + KEGG: cbe:Cbei_3765 glycoside hydrolase, family 3 domain + protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 3 domain protein" + /protein_id="ACL75496.1" + /db_xref="InterPro:IPR001764" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002772" + /translation="MAVNTRIFHCDEFFRLSREEKKEFQSIIQKELEENPIKHLDTEW + GRFENLSPMSEEEIDRLAEEVLSEMTLEQKVYQMSCDNDARYAPLNPPRYNFIPYYAG + EDLDLNIPAVKFTDGPTGIVMSYHATAFPVSIARGSTWDTELEERVGNVIGIEGRSGG + ANFFAGVCINLLRHPAWGRAQETYGEDTVLLGKMGAALTKGVQKHMMACVKHYAANSM + ENARFKVDVEMDERTLREIYLPHFKECVDAGAAAIMSAYNRVRGEWCGHHDYLLNQIL + NGEWGFKGFVMSDFIWGIRDTVDAANGGQCMEMYATQFFGKRLVDAVRDGKVDEIKID + AAVKRILREKIRFSFVGDKAQYSEEKMGCKEHAELAREVSEKSTILLKNEGLLPLEKD + KIKKITVVGRLAVEPNTGDLKGSSAVFPPYVITPLQGILNEAGSGIEIKYADGRIPHQ + AQELSKDADVVVIIAGLTSLDEGEFITNGGDVGGDRKYLGLHPEDEDLIEAVSKANKN + VIVVLQGGSTIIVEPWKNLAKAILIQWYPGMEGGTALANILFGKANPSAKLPITVPAT + PQQLPYFDMNATSIAYDYYHGYFLADKEKYPVSYPFGFGLSYTNYSYSNPKVTKNGDT + ITVSVDISNTGKIAGDEVVQLYIGYKGSKVERHVKDLKGFTKIHLEPGEKKTAIIEID + KEDLAYYCPESKQWVVEDIGYVALIGASSACKDLLKADFDLK" + gene 1403479..1403982 + /locus_tag="Ccel_1140" + CDS 1403479..1403982 + /locus_tag="Ccel_1140" + /inference="protein motif:TFAM:TIGR00589" + /note="TIGRFAM: methylated-DNA/protein-cysteine + methyltransferase; + PFAM: Methylated-DNA-[protein]-cysteine + S-methyltransferase DNA binding; + KEGG: aoe:Clos_0936 methylated-DNA--protein-cysteine + methyltransferase" + /codon_start=1 + /transl_table=11 + /product="methylated-DNA/protein-cysteine + methyltransferase" + /protein_id="ACL75497.1" + /db_xref="InterPro:IPR001497" + /db_xref="InterPro:IPR014048" + /translation="MKNINFFQTQIGRIGITEEDNRITNVFFETDYCMETVLDGKKSL + QQSAFNINETSLLMEAGMQLNEYLEGKRIAFDLPLAPKGTDFMKSVWNCLLRIPYGKT + RSYKEIAEAAGNPRACRAVGMANNRNPIPIFIPCHRVVGANGSLTGYRGGLEIKKKLL + EIEKSKN" + gene 1404059..1404298 + /locus_tag="Ccel_1141" + CDS 1404059..1404298 + /locus_tag="Ccel_1141" + /inference="similar to AA sequence:KEGG:Clos_0866" + /note="KEGG: aoe:Clos_0866 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75498.1" + /translation="MGRFEGAQKVGIRDKDTRELLAVYPYKIEGTDDEIEANVRNWYY + KQSCIAEEFLRKSYVDELTEHELKSHKDDDTKKVY" + gene 1404445..1405533 + /locus_tag="Ccel_1142" + CDS 1404445..1405533 + /locus_tag="Ccel_1142" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cbl:CLK_0309 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75499.1" + /db_xref="InterPro:IPR007197" + /translation="MDRSSLSEYMSRTVENIVSHTIRSTLKNPKETAFLIKYLFTTKI + AAARRLKSEKAGLHIPPFLIASITKSCNLRCSGCYARELHSCSDEVRDSQMTCQRWNE + IFREAESLGISFILLAGGEPLMRRDVVVKAADSKNIIFPIFTNGLLMNNFYIDLFNKN + RNLIPVLSIEGYQEETDQRRGQGTYKALLEVMGKLDDSGIIYGTSVTVTTQNIEEVSG + KKFIDILSNLGCKIIFYVEYVPAEEGTDYLAPTEKERESLAERLTGLQSDYKDILFLS + FPGDEKATGGCLAAGRGFFHINADGGAEPCPFSPQSDTNLREVCLKDALKSPLFARLD + SEGLLLGEHRGGCMLFEKKAEVDALMGL" + gene complement(1405599..1405889) + /locus_tag="Ccel_1143" + CDS complement(1405599..1405889) + /locus_tag="Ccel_1143" + /inference="protein motif:PFAM:PF01022" + /note="PFAM: regulatory protein ArsR; + KEGG: pth:PTH_1733 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, ArsR family" + /protein_id="ACL75500.1" + /db_xref="InterPro:IPR001845" + /translation="MIDLKVYEKKADKIKALAHPQRLCIVKGLIDGGCNVSKIQECLG + LPQSTVSQHLAKLKSAGIIDGERKGLEICYNVIDEEIINIVKILLKDEIAKG" + gene complement(1405958..1408411) + /locus_tag="Ccel_1144" + CDS complement(1405958..1408411) + /locus_tag="Ccel_1144" + /inference="protein motif:PFAM:PF00070" + /note="PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; SirA family protein; Rhodanese domain + protein; pyridine nucleotide-disulphide oxidoreductase + dimerisation region; + KEGG: afl:Aflv_0303 multidomain redox protein + (NAD(FAD)-dependent oxidoreductase; rhodanese domain; + SirA-like redox domain; peroxiredoxin domain)" + /codon_start=1 + /transl_table=11 + /product="FAD-dependent pyridine nucleotide-disulphide + oxidoreductase" + /protein_id="ACL75501.1" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR001455" + /db_xref="InterPro:IPR001763" + /db_xref="InterPro:IPR004099" + /db_xref="InterPro:IPR013027" + /translation="MSIKVVIVGGVAGGASAAARLRRLDENAEIILFEKGQHISFANC + GLPYYIGEVITEKENLFVTTPEKMKQRFAIDVRVNSEVLRVDPVSKIVEIKDHEKNRI + YTESYDKLVLSPGAEPIRPQLPGINSSRIFTLRNIPDTYSIKDYVDKMNPQRAVVVGA + GFIGLEMAENLHLRGINVSVVELADHVIGPMDFDMAAIVHNHLRTKNVELILKDAVSA + FDETETHINVTLSSGKVIKADMVIMGIGVRPDVRLAADAGLTIGSSGGIRVNEYLQTS + DPDIYAVGDAIQVKDYISQNPALIPLAGPANKQGRIAADNICGGKEKYEGTQGTSIVK + VFDLTVAVTGNGERLLQRNNIQYEKSFTHSASHASYYPGGIPMSIKLLFEKSNGKLLG + AQIVGYDGVDKRIDILSTAIRAGMTVYDLEKLELAYAPPFSSAKDPVNIAGFTASNIL + QNNCKIFHWNEVDNINKGIGVLLDVREQVEFQLGTINGAVNIPLDGLRGRLHELPKDK + TIFVFCQVGLRGYLASRILTQNGFEARNLSGGLKTYGMAVEKQTNEGIFDTHLPELHT + LEETPSPITELDACGLQCPGPIMKVFDTMKSINENDIIQVKATDPAFQEDIKTWCNST + GNQLLDVKFENKTFIAKIKKGIKEDSPRDMKDRNANKNNKSMIVFSNDLDKAIASFII + ANGAASMGRKVTMFFTFWGLNILRKPKNTTSIKKDFISRMFGVMMPKGSRKLSLSKMN + MAGIGPKMIRNLMNKKNIYSLEELLTQAQKNGVEFVACNMSMDIMGIKKEELIDGVTI + GGVASFLGSAEESDMSLFI" + gene 1408565..1408702 + /locus_tag="Ccel_1145" + CDS 1408565..1408702 + /locus_tag="Ccel_1145" + /inference="similar to AA sequence:KEGG:CKL_2423" + /note="KEGG: ckl:CKL_2423 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75502.1" + /translation="MSSNRKNKKSNKQKEDGAFHSKNIKHDPQAESARAKFGKETPAS + E" + gene 1408927..1410042 + /locus_tag="Ccel_1146" + CDS 1408927..1410042 + /locus_tag="Ccel_1146" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: cth:Cthe_0744 copper amine oxidase-like protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL75503.1" + /db_xref="InterPro:IPR012854" + /translation="MKKIIAVLLCAILTFNSGIIMAAQTSSVTEDKTAKVVIDGIPLK + LENVAVIKDKKLMLSTEIFTGLGVAKSSQVWDKSKTKLTLTKGKTKLIMQLNSSTATL + NGTKKTVSVKPFLYKSKAYFPADFVASSFGRYINKDSQTNTYFLKDKSSFSKNKVLLD + NALKSMNSVSKLKVKENADLSLKGSGLDIKLTSPISTSMDIKSKKALSTINYKMNVNG + EVAENNILIAMTDNAKYSQVDKGEWTQQEMSKQEFAAGFTFNSILKYDNTVLSALTAI + NGKNKNEVILKGNVVIGSIISDFLTSQELVKNQIASKYVELTINKSTNCISKIILKES + GTTTIEGTKYNFSTNYQMNFSDINGKFDVVLPSDLNS" + gene complement(1410226..1411071) + /locus_tag="Ccel_1147" + CDS complement(1410226..1411071) + /locus_tag="Ccel_1147" + /inference="protein motif:PFAM:PF02673" + /note="PFAM: Bacitracin resistance protein BacA; + KEGG: cbl:CLK_3605 putative undecaprenol kinase" + /codon_start=1 + /transl_table=11 + /product="Bacitracin resistance protein BacA" + /protein_id="ACL75504.1" + /db_xref="InterPro:IPR003824" + /translation="MDTLLFVLKSIVLGIVEGVTEFLPISSTGHLIIFENIMGFKSAS + PNYVKMYTYVIQLGAIMAVVLLYWKKIKETVINFFPGKVGYEKSGFKFWFMIFIACIP + GAAVKLLLDAPVEKYLMTPVSVAIVLILGGLWMIYAEKKFRNNNLGKQKLSVTPKQAL + IIGAFQCLAIIPGMSRSASTIIGGWVAGLSTVVAAEFSFFLAIPVMFGYSLLEIIRIG + GLTSLPAAELISLVVGFIVAFIVAVAVISQFISYLKRKPLKSFAIYRMIFAVIVLIAG + FMGFF" + gene 1411372..1412082 + /locus_tag="Ccel_1148" + CDS 1411372..1412082 + /locus_tag="Ccel_1148" + /inference="protein motif:TFAM:TIGR00091" + /note="TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; + PFAM: putative methyltransferase; + KEGG: cbt:CLH_0861 tRNA (guanine-N(7)-)-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="tRNA (guanine-N(7)-)-methyltransferase" + /protein_id="ACL75505.1" + /db_xref="InterPro:IPR003358" + /db_xref="InterPro:IPR004395" + /translation="MRLRRKPWARPELAACDFYVDDPPSYKGRWREFFDNSNPIHLEL + GCGKGGFISELAADNQNINYIAVDIKSEVLALAKRKIEKEYKERGIQEIKNIRLMSHN + IELIDNMLDTVDFIEKIYINFCNPWPKTPYKKKRLTHGKQLIKYKQFLASGAEIWFKT + DDDGLFEDSVKYFEENGFIIKYKTWNLHESGFGENVPTEHEIMFSEEGIPIKFLIAEY + KQKIHQAVCIGINIKEEN" + gene 1412085..1412810 + /locus_tag="Ccel_1149" + CDS 1412085..1412810 + /locus_tag="Ccel_1149" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; Tellurite resistance methyltransferase, TehB, + core; + KEGG: cth:Cthe_1959 methyltransferase type 11" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL75506.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /db_xref="InterPro:IPR015985" + /translation="MSFYEKISKYYDYIFPTGNEQIDFLREIAGNPPKSVLDIACGTG + GYSLELDRQGYNVTAVDLDMEMVRQLEIKAKENNQSVRFMQGNMLELQNKITDSFDLV + FCIGNSIVHLENLEQIRKFLKTAKQLTGKDGNLVLQIINFDRIILRDIKSLPTIENKR + AGLTFERNYRYDQSCNRIYFNTVLSVDGEVYENEIPLYPLREDDLVEAVSEAGFKRVK + LFADFKGNEFDKYNSYMLVLWAR" + gene 1412854..1413546 + /locus_tag="Ccel_1150" + CDS 1412854..1413546 + /locus_tag="Ccel_1150" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: cth:Cthe_0049 XRE family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="plasmid maintenance system antidote protein, XRE + family" + /protein_id="ACL75507.1" + /db_xref="InterPro:IPR001387" + /translation="MSRIGQEINKLRLKKGMTPKQLARALGVSEKFVLDIESGKKIVS + DDMIGRVSKALDFELGPIGLFASDDKLTPGNGNDANVRSVKKVAPIVSNEPVQQVWDD + AFGNILKTVPVYDYKMDRIIDKKLLPIEKNRVEGYAKEKVFYLDIEDTDMSGFRIFKG + DRAFGILENQIDKDGIYLIEYNGERAVRQVKKLHGNKLLLVYNRGTLITETVGTKEIK + VIARLIKLEITL" + gene 1413688..1414374 + /locus_tag="Ccel_1151" + CDS 1413688..1414374 + /locus_tag="Ccel_1151" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbl:CLK_0187 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75508.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MKEVLRIENLTKKYGKGQNEVTAVDNINFSVEKGEFVAIIGPSG + SGKSTLLHLIGGVDKPTSGKVYIDGKDIYGLREKDLSILRRRKVGFVFQAYNLIPVLT + AEENILMPLLLDGRKEDRQYIDELLKILDLKDRRKHLPSELSGGQQQRVSIGRALANK + PSIILADEPTGNLDTKNSREVLELLKFSAKKYNQTLILISHDMNIASMADRVISIVDG + KISSDEVVRQ" + gene 1414371..1416872 + /locus_tag="Ccel_1152" + CDS 1414371..1416872 + /locus_tag="Ccel_1152" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: cbh:CLC_0840 putative ABC transporter, permease + protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL75509.1" + /db_xref="InterPro:IPR003838" + /translation="MKNYSTLTSRYLKKHKGRTILTLIGIIIAIAMFTAIGSIYYSGV + DSEIKNAKANGDYQVYFYDLGKENVNALYSNAEFKNGGVIKLEGKYKFENDKLTESLR + TLDIKSYDAAAFKDIFKVKLLEGRLPRNSSEIVIDKKLSAVLKDKKISNALKGTLADK + NSSSGKDYTIVGVYDSNYITNTALSYLDIKTSSDSKDYFFYANMKSEKNIVDNAQKIA + KANNVKLETNTLLLYLMGEGPDKTRNDSMDQIFAIIAGFVVICTVVVIYNSFNISVME + RIKHFGILRSIGATKAQIRRLVFKEAAIMSAISIPIGIIAGFAGIFITFRLFMNGFLG + AFEIGFYPKVIIVAAILGIFTVFISAFFPARTASKVSPIDAIRGTVVVKGDKAKRRGG + RWARLLFSFEGQVAYKNIKRNRKRFYVTCISLMISIVMFVFFSNFIDIFVQSNKIANQ + AIRVEATFADTSDVNLAGNLPKQVKELDGIKEIYEMTNKYITYTLDKKMLSDKFVNSL + NYNTKLEEYGQNYFINSVRLLGYDENCLKLFNKENKTNIEYDSFKNNNEVIIVNKARG + SQDKTTIFDSFTKYKVGDEIKMPVLNSSYLKNPDTEQLKRLIDNGKTITFKVAGVVDY + EAVLQNIPYNSFGMIMSHDSFERLTGTSEISIIALNFDSPEYAEKNYEKLNMLADENK + AQYIDINKQKKQFDDLMNQMMILVYGFISLIILISTVNIINTITINLLVKKREYATFK + AIGMTKGQFQKLVLLEGALFGLIACIIGLPIAFLLTYFGIINNNPLGDIGYRAAWWPY + LYGGLGVIVITLLAALFPLRKLNDMNIVESLRVEE" + gene 1417027..1417701 + /locus_tag="Ccel_1153" + CDS 1417027..1417701 + /locus_tag="Ccel_1153" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cbf:CLI_0872 DNA-binding response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL75510.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MNILLVEDDAPLAMGIEYALKKQDFSVSIAKNIKEAYRIFNEEV + QLILLDVTLPDGNGYDFCKQVRQTSTVPIIFMTALDDEPNVVFGLDIGGDDYISKPVR + TSELISRINAIMRRQKQTDGLDTGRITSGSVVVEPLKCKVCVNSQEVFLTAVEYKLLL + VLLENKGKVMSRNTIIEKLWDIDSNFVDYNTLNVYMKRLREKIETGDEKHIETVRGLG + YMWKES" + gene 1417727..1418971 + /locus_tag="Ccel_1154" + CDS 1417727..1418971 + /locus_tag="Ccel_1154" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cbl:CLK_0191 sensor histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75511.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MKLLKNKEIQLTIGIITVLIIALGAVSYYTVRNFVNYVNKTQIQ + QNTVAIGAIVKQYPHLESDIVKNYTKGFKEDYEYGKSILKKYSYDENLGVEKNYILEN + SFKKAYTRIKITIVGFWVVLVLFCVLSFNRIFSKIRKISVSAEAIVEGNYDSIKGDTQ + EGDIGYLIYQINCMSERLSENVHALENEKIFLKRIMADISHQLKTPLASLIMFNDIMK + NDSSLSEEERAGFVLESKNQLDRMEWLIKNILKMAKLEAGVVEFSMEEADISETVQRS + LSPLKTIAAEKNVDIRLNGSSGVIVNHDINWTTEAFSNIIKNCIEHSSKGGDINISWD + ENNVFVQIIIEDEGQGIPKDELSRIFDRFYKGSYSCNPTNIGIGLYITKTIVEGQNGS + IYVSSTHGKGTRFTVRLMKNPL" + gene 1419001..1419903 + /locus_tag="Ccel_1155" + CDS 1419001..1419903 + /locus_tag="Ccel_1155" + /inference="protein motif:PFAM:PF00294" + /note="PFAM: PfkB domain protein; + KEGG: ote:Oter_2311 ribokinase-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="PfkB domain protein" + /protein_id="ACL75512.1" + /db_xref="InterPro:IPR002173" + /db_xref="InterPro:IPR011611" + /translation="MGKNDIYLYGMTLVSKMNLLEGEYPEADTYSEIKESYVLPGGET + GSCAIVLSALGLTVKIDGNFQGRKTQGILEEYLVGRFGIDMSGVYFDSTFDGVRDMVL + IGTNSRTCFGAFCSYFSNETKRWNKPDIKDIENCSVVGLDPFFMEQSEAVADYCQGLG + KKYVTIDCKYDTVIHKYSEVNVISNEFIRNNYPERDVNELFRDYTKNTEGLVIFTFGS + KEIMFGRRNQPIQRMKPYRVKVQSTLGAGDSFKAGAIYAVLKNMSDEQIVQFAAATAA + TVCSRFPLALYPPDIETINQLINK" + gene 1419980..1420891 + /locus_tag="Ccel_1156" + CDS 1419980..1420891 + /locus_tag="Ccel_1156" + /inference="protein motif:PFAM:PF01297" + /note="PFAM: periplasmic solute binding protein; + KEGG: cpy:Cphy_3491 periplasmic solute binding protein" + /codon_start=1 + /transl_table=11 + /product="periplasmic solute binding protein" + /protein_id="ACL75513.1" + /db_xref="InterPro:IPR006127" + /translation="MKLNTLLRTLLITLAFSFILAGCSAGTENTTENNETTIVTSFYP + MYIFTQNIVKDIPGIKLENMTEPQQGCLHDYQMVPADLKTLEKADIFVINGAGMEAFL + DKVIKQRPSLKIVEASKNIELIKDPNGEKNAHVWVGVSGAIQEVKNIAEGLAESDAKN + ADAYRKNASEYVKQLGALKEKMNKELKEFKKKDVITFHEAFPYFAKEFGLNIVSVVER + EPGTEPSAGELAGLINKIKSTNVKILFAEPQYSAKAAESIAKQTDAKVYMLDPVVTGE + KNAPADRYIKTMEENLKVLVKAFKENQ" + gene 1420922..1421623 + /locus_tag="Ccel_1157" + CDS 1420922..1421623 + /locus_tag="Ccel_1157" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: ckl:CKL_0966 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL75514.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MVEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKL + RADEFQLVILDIMLPKVGGYEVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYL + AKPFGIGELTARVKAQLRRYLNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLT + AKEFEILKLFLQNPRKVFTKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPS + YIQTIWGIGYKLVEE" + gene 1421625..1422557 + /locus_tag="Ccel_1158" + CDS 1421625..1422557 + /locus_tag="Ccel_1158" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase A domain protein; + KEGG: ctc:CTC01804 sensory transduction protein kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75515.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008358" + /translation="MSVLIGIVTLSVILNIVLSLKIIAIKKGMNYITGVLSDISNFRS + NRRIHIGLKYKTLKDISSELNILLDKFQSTLDEKQTLEIAHKQLIANISHDIRTPLTS + LLGFVEVLQKGDGISNTEQKEYLDIIQTKAQNLYKMIQDFFELSKLESEDTPIRLVKT + DLTDLAEEVIAAFYQDFVMNGITPEIQLPQHPVYVWGDRISLQRILNNLISNALKYGK + DGRVTGISVREEVEKVWLDVWDRGNGIPGQDLPLVFNRLYTSEISRNSSMRGTGLGLA + ITKQLVEKQNGEIEVSSNPGEKTVFSFSLIKYRI" + gene 1422690..1423451 + /locus_tag="Ccel_1159" + CDS 1422690..1423451 + /locus_tag="Ccel_1159" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ckl:CKL_0962 transporter protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75516.1" + /translation="MYETLSTEFLKLRRSKLLIYALIAGILPSIVKFLQFILGNTDKV + DGWQWFLASRQEIMVFGVLITVILSSSFIFNMEYQYGTASYIYTSRVPKIQIFLAKLL + TIFAVVVLIFAVTLASELLFGVIAIKTAIPGALLLKLIKVTVWYMLSYGFLSTIVILI + SVLTKRFVLTSVIVFGYMMLVFPFHLKNNIYISPFMTPTAVAARIFGSNNYILVSYFK + DVSVNTTAAAVFIIALTAISLALGLIVYHKSDALL" + gene 1423472..1424203 + /locus_tag="Ccel_1160" + CDS 1423472..1424203 + /locus_tag="Ccel_1160" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hmo:HM1_1647 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75517.1" + /translation="MFLNLIYTELIKYKRTPVFWMIAIGGVLTAGTAMLLVTSEKAVA + TWDGFTVAGMNGINLVALFIVAVMTGYVISGEYQQSTIGILFTYPVSKIKLFMSKQAV + MLIFCISLYISFLVSAFLFGIVFIGIPEWKLILKLLRLIFIMAGLNFVLVPLTSLICL + LVKSAGTSIFTGMGYFISYMCFINMKNSLFILTCTPNKLVDNYFVTESIGRGDVKGIL + AVSAAVFVTSALISAVYYSRHDVYK" + gene 1424223..1425146 + /locus_tag="Ccel_1161" + CDS 1424223..1425146 + /locus_tag="Ccel_1161" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbb:CLD_2289 antibiotic ABC transporter, ATP-binding + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75518.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MDYILKTQNLCKLYKNKKAVNGVNINVSKGDIYGFLGQNGAGKT + TTIRMILGLIKPTEGEVFLFGERIFPGQNAHYGRIGSVIETAGFYPNLTAVENLEIHR + RLMGVTNKSYLEEALEITGLTDVRNKRVKGFSLGMKQRLGISRALLHKPEFLILDEPT + NGLDPVGIKEIRKLIQDLSMKRKITVLVSSHILSEIQQIASKIGIIHEGALLEEIDFE + SLKKKSRSYIEIKTSDDKKASFLLEKRKITDYKVIEQGVIRVYEKLNESSIFNRILSE + NGVEVSEIRVMNDTLEDYFLQLTGGSFRIQS" + gene 1425233..1425811 + /locus_tag="Ccel_1162" + CDS 1425233..1425811 + /locus_tag="Ccel_1162" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75519.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene 1425853..1426653 + /locus_tag="Ccel_1163" + CDS 1425853..1426653 + /locus_tag="Ccel_1163" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75520.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(1426753..1430283) + /locus_tag="Ccel_1164" + CDS complement(1426753..1430283) + /locus_tag="Ccel_1164" + /inference="protein motif:PFAM:PF01855" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; pyruvate ferredoxin/flavodoxin oxidoreductase; + pyruvate flavodoxin/ferredoxin oxidoreductase domain + protein; 4Fe-4S ferredoxin, iron-sulphur binding, + conserved site; + KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein" + /protein_id="ACL75521.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR002869" + /db_xref="InterPro:IPR002880" + /db_xref="InterPro:IPR011895" + /db_xref="InterPro:IPR017900" + /translation="MSKIKMTVDGNTAAAYVSYAFTDVAAIYPITPSSNMAELVDEWS + AKGKKNIFGQKVRVVEMQSEAGAAGTLHGSLQAGALTTTFTASQGLLLMIPNMYKVAG + ELLPAVFHVSARAIATHALSIFGDHQDVMATRQTGVVMLASGSVQEIMDLAPVAHLAS + IKGRLPFLHFFDGFRTSHEIQKVEALDYEDLASLVDYEAVKEFRDRALSPNHPVTRGT + AQNPDVYFQGREALNPFYNDIVGIVEDYMNKVGALTGRKHGLFDYYGAPDAENIIVAM + GSITDVVEETIDYMNSQGKKYGLVKVHLFRPFSVKHLLNVIPKTVKKIAVLDRTKEPG + SVGEPLYLDVKAAFYSVPDAPVIVGGRFGLASKDTTPSDIKAVYDNLEQQNPKDQFTI + GIDDDVTHTSLTVNEKINAEPKSTIRCKFWGLGSDGTVGANKQAIKIIGDHTEKFAQG + YFAYDSKKSGGVTMSHLRFGDERIKSAYLINEADYIACHNQSYVNQYDLLKGIKKGGI + FVLNCLWDEKELEDHLPAEIKRQIAQNNIQFYTVDATKIAESIGLGNRINMIMQAAFF + KLANIIPMEDAVKYLKDAVVKSYGQKGENIVKVNHEAIDKGINAIVKVNVPDSWKDAQ + DTSHSDIEEPEFISKIMRPMNAMKGEDLPVSTFKGIEDGTLPNGTSAYEKRGIAVNVP + EWIPETCIQCNICSLVCPHAVIRPTLATEEELKDAPESFVTKKAVGKGLEEYQFRIQI + SPMDCTGCGNCADVCPAKPKALVMKKLSTQTEREIPNFDFVTRNIGYKGGNFGNKTIK + DSQFRKPLMEFSGACAGCGETPYIKLITQLYGDRMMIANATGCSSIWAASYPTSSYTV + NHEGKGPAWANSLFEDNAEFGYGMYLGVKQIRERLRDVANELLELDIEESMRPLLSKW + LESVEDGAASKGASEDLINALQSYSNKDQKQMQLVNELLEKQDYLVKRSIWVVGGDGW + AYDIGFGGVDHVLSTGDDINMLVFDTEIYSNTGGQASKATPTSAIAKFASSGKKQAKK + DLAAQMMTYGNVYVAQVGIGADRNQMLKAIAEAEAYKGPSIIIAYSPCISHGIKDGMG + RSIANSAAAVSAGYWHLFRYNPDLKKEGKNPFILDSKEPKESFREFLMSQVRYSSLSK + LFPEEAEDLFSRAEEHAKEKYERLKRMAEL" + gene complement(1430304..1430495) + /locus_tag="Ccel_1165" + CDS complement(1430304..1430495) + /locus_tag="Ccel_1165" + /inference="similar to AA sequence:KEGG:Cphy_0602" + /note="KEGG: cpy:Cphy_0602 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75522.1" + /translation="MNKKDAQLEGRDNRRQTAYRPTDNEGTAAWTNEATKQKHTNVVI + PKTEGVSEAKKWVDNGSKL" + gene complement(1430707..1431489) + /locus_tag="Ccel_1166" + CDS complement(1430707..1431489) + /locus_tag="Ccel_1166" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dsy:DSY1962 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75523.1" + /translation="MDKIKKLRLRPIVNFKVVTILPEKENAICGTCNQAKVGNKEFPT + LEKAIYSIDSPDKTTITLLTDVNLGKSTLSLGINTNIVLDLAGHKLTSTNCDGTIYLE + GALTVIDSNEKETGVIENLYPKGMGIYFNRSGVLKLEGGTIKGYSALYNWSNTPAPFV + IMNGGTLKGSCYGISYLDAANIIINNGTVQGGVMAFNNWGKSTHSFYIGESSYIKKGA + LLHSGVAKKYDATDNIVVVKKQYEIVNSFFTQNTISSSFSLA" + gene 1431818..1432555 + /locus_tag="Ccel_1167" + CDS 1431818..1432555 + /locus_tag="Ccel_1167" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; LytTr + DNA-binding region; + KEGG: cdf:CD3255 two-component response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, LytTR + family" + /protein_id="ACL75524.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR007492" + /translation="MKIAICDDLRFDRTLLCEYILQYAKNSLINIEVVEFDSGEEMLS + SFSEEKYKIVFLDIYMKGIDGVEVAEKIRETDEDCKIIFTTSSEDHKGEGFEVAATHY + LIKPITYERVEQALNRCKQILAFDAQYIELPFGKEFVKINLRDILYVEAVRNGVVITT + ELKEFKIHMSMAKICNIITDKRFLRSHRGFIVNMQHIISTKDNEFVLKNGSIVPIRQS + GRKEIKIAYMHYVIENHKKIQSSDVII" + gene 1432737..1433369 + /locus_tag="Ccel_1168" + CDS 1432737..1433369 + /locus_tag="Ccel_1168" + /inference="protein motif:PFAM:PF02915" + /note="PFAM: Rubrerythrin; + KEGG: cpy:Cphy_2815 rubrerythrin" + /codon_start=1 + /transl_table=11 + /product="Rubrerythrin" + /protein_id="ACL75525.1" + /db_xref="InterPro:IPR003251" + /translation="MQYYENWPYVSSNMIGPGPTNKNMGSGMPTPGIMQPDMNMDLQP + GYTPHLMQQETMQPGMGLDMMQQEHIDVDMAEALELIRQQIKGEMQDRLFYQYLLDNV + PTLLDKEIIEEVRDNEKKHAKIFRQLYFELTGKTIQPDENVSFEKPKTYCEGLRGALM + GETSAIKKHRRILAAMKSRKHINMMVEIITDELRHGSLYNLLIHNNNCKY" + gene 1433534..1434187 + /locus_tag="Ccel_1169" + CDS 1433534..1434187 + /locus_tag="Ccel_1169" + /inference="protein motif:PFAM:PF09335" + /note="PFAM: SNARE associated Golgi protein; + KEGG: sat:SYN_00515 DedA family protein" + /codon_start=1 + /transl_table=11 + /product="SNARE associated Golgi protein" + /protein_id="ACL75526.1" + /db_xref="InterPro:IPR015414" + /translation="MNIIVKFFDFVMNLDENLTLLANTFGVWTYVILFAIVFCETGLV + ITPFLPGDSMIFVIGALSASGELNLTVITIVLIAAAILGDTCNYHIGKFFGPKVFKKD + NVRFLKKEHLIKTHNFYEKHGGKTIILARFIPIIRTFAPFVAGMGSMNYIKFISYNII + GGILWVALFLTAGYFFGNVPVVQENFTLVILAIIFISILPGFVAYLKNKKAGPAGEE" + gene 1434333..1434833 + /locus_tag="Ccel_1170" + CDS 1434333..1434833 + /locus_tag="Ccel_1170" + /inference="similar to AA sequence:KEGG:Cthe_0055" + /note="KEGG: cth:Cthe_0055 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75527.1" + /translation="MKKIKILFTIAFIISILSSSVFAVESNIGSKSQDGENGQHKEEI + KDKEKCQKCRKDPLKYLEDKKQSIEKDLKEGRISKEEADEKIKEIDQRIQKIKEFNSL + PLSEKKAKIYSRFQKHIDKKVSDGIITNEEGQKLLTEFKKELDQWDGKDFPKFNMDKM + DHKKHG" + gene complement(1434911..1435831) + /locus_tag="Ccel_1171" + CDS complement(1434911..1435831) + /locus_tag="Ccel_1171" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: protein of unknown function DUF6 + transmembrane; + KEGG: amt:Amet_1076 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL75528.1" + /db_xref="InterPro:IPR000620" + /translation="MNIITKSNAQIFLIINAILWGSSYIWSKMLLGFLPQFSILLICA + VLGLCSTIILFRKKLQGFNKKIVVTCVLISLISVVSNTFCMLALKKTSGSNTAFIVQL + SIVITPIIMAVLERKVPSRKTILPAMAAMVGIYLITFAGKGMSVNPGDIFALCNAIFF + SLFIALQNKFSNVFTAVQFTFVQHSTNIVCFLALALIFETGKIVFSNAVNPLFILLIC + LNATVTIFTSLFQSSAIKFVRPENAAIMYALEPVVTTVLGILLLGESFSGILTVLGCV + IILFTIIISACKKGRFYSRESLKLRITTKA" + gene 1436011..1436895 + /locus_tag="Ccel_1172" + CDS 1436011..1436895 + /locus_tag="Ccel_1172" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: cbl:CLK_3774 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75529.1" + /db_xref="InterPro:IPR000005" + /translation="MQNELGIKRGYLEDDFKFFHLKDRNNIQFEHHYHDFNKIIIFIN + GNVIYNIEGKNYRLKLWDVLFVPANQVHKPIIAPDNEYERIVIWINNKFLEEHGTPKN + DLLTCFNMAREKRHLVRLGPNSLNNIKSILGNLEKELKNVTFGSGILANALFVQFMVY + INRLYLKPDKQVEDIEVEFDEQIQKVIHFINENLSDDLSIAALSERFYINKYYLMHKF + KANTGYSIHSYVNNKRLQKSADLIKSGKSPSYAAGECGFNDYSSFLRSFSKMYGMSPR + KYYKSTLEHPVNSFQVEG" + gene complement(1436903..1437673) + /locus_tag="Ccel_1173" + CDS complement(1436903..1437673) + /locus_tag="Ccel_1173" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + KEGG: tpd:Teth39_2175 3-ketoacyl-(acyl-carrier-protein) + reductase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75530.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /translation="MSLFTNKTIIVTGAGQGIGRAVSRRFAKEGANVVIADIDEEAGL + ENEKHIRNEGHEAIFIKTDVSDPASVEAMVNYTNKKYGRIDVLVNNAVLEGFGNIFET + TVEQWDKAIAVNLSGVYYCAKFCAAVMRTQSRGSIINMASTRAFMSEPDTEPYSASKG + GIIALTHSLAISLGKYGIRVNSVSPGWIDVSSWKKSAVACQDNLSIEDHTQHPAGRVG + VPDDIAEVCLFLASDKAGFITGENITVDGGMTKKMIYV" + gene 1437797..1439734 + /locus_tag="Ccel_1174" + CDS 1437797..1439734 + /locus_tag="Ccel_1174" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; 5'-Nucleotidase + domain protein; + KEGG: pmy:Pmen_1038 metallophosphoesterase" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL75531.1" + /db_xref="InterPro:IPR004843" + /db_xref="InterPro:IPR006179" + /db_xref="InterPro:IPR008334" + /translation="MRYRSPALFIVASIIILLYMFSKIYAYQEPIEVKIIFTHDMHDH + LLPNKGEYNGSTVWTGGYSRLKTSIDKEKMENKNTILVDAGDYSMGDLFQSLFSTDAP + ELRVMGQMGYDVTTFGNHEFEFKDIGLTRHLNSAKNSGDKLPQIVSSNIVFPVGDKTT + RSSYELQQTMKAYGVKEYTILNRGGIRIGVFGLMGEDADNCITTTEVSFDNIIESAKR + VVKKLKQEKVDLIVCLSHSGTWNKASKSEDEILARKVPDIDVIVSGHTHTLLEKPIIH + GNTIIGSCGEYGNNMGVIKLVKNPSKRWSLKDYHLKHIDQSIEGDNGISQTVSKFMDM + VQEKYLNYFGLQFDEVLCRSPFGFIASEQIGKKLQEDTLGNLISDGYIYSVKQAEGKG + YEPVSVAIVSVGTMRGSFVEGDITVQDAFISSSLGIGSDGISGYPLITVYLTGKELKN + LCELDASISPMANYAQLYMSGISYTFNPNRMKLNRVIEANLQKPDGTPEKINDKRLYR + VVSELYNAQMLSTVGAKSFGLLSVIPKTRDGKPIKNFDSHIIYSNWGGHTTELKEWLA + TARYLQSFTRIDGVPQIPYYYNTLQGRKNIDNTDSLSAILSNPNSIAVKIYTVVLTMV + VVMTAAVVIIIRYMQKKFNKK" + gene 1439832..1440173 + /locus_tag="Ccel_1175" + CDS 1439832..1440173 + /locus_tag="Ccel_1175" + /inference="protein motif:PFAM:PF03551" + /note="PFAM: transcriptional regulator PadR family + protein; + KEGG: lmo:lmo1213 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, PadR-like family" + /protein_id="ACL75532.1" + /db_xref="InterPro:IPR005149" + /translation="MNQKLVKSYLPMSETGFYILLSLNEPRHGYGIILYVKEITGGRI + NLGAGTIYGTLNKFEKDSLIEPSGEEDRRKLYRITEKGKWLLKQEISRIDEMYVNGHK + VLGGFNHDQDI" + gene 1440157..1440678 + /locus_tag="Ccel_1176" + CDS 1440157..1440678 + /locus_tag="Ccel_1176" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cdf:CD1088 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75533.1" + /translation="MIKIFKWWWAWEYERIENWLEEMEASGLHLVKTRIKGLYFYFER + CKPTKARYCVDYQSKLTSEYITLIRDDGWELYQIGMGWYILRKQYEDERPELYTDFES + LIARNKALLTILLVATVLEVVSFGNMIWDIYNDSTKSMLPVVCIMGSLILAFFSFIIT + NVIMQITKFRRKQ" + gene 1440701..1441597 + /locus_tag="Ccel_1177" + CDS 1440701..1441597 + /locus_tag="Ccel_1177" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpy:Cphy_1057 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75534.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSLQIRNVSKKFGEKLAVNDITFEVGEPGVFGLLGTNGAGKTTT + IRMILNIVKKDSGSILWNNKPVEREVTNFGYLPEERGLYPKVKVAEQLMYFARLRGIS + SAKAKKDISNWLERMEASQYANMAAEKLSKGNQQKIQFIASILHDPDLIFMDEPFSGL + DPVNTELFKGVIHELINKNKYIIMSSHQMSTVEEFCRDIVILKNGNTVLNGNLKKIKH + SYGRNNLLINSEGDIIELAAQEGITKVNRTAAGYEFKISNEEQAYRLLEKVLNKKLML + DKFEIREPSLHEIFIEKAGEAK" + gene 1441594..1442874 + /locus_tag="Ccel_1178" + CDS 1441594..1442874 + /locus_tag="Ccel_1178" + /inference="protein motif:COG:COG1668" + /note="KEGG: bcy:Bcer98_3209 sodium export permease + protein" + /codon_start=1 + /transl_table=11 + /product="ABC-type Na+ efflux pump permease component-like + protein" + /protein_id="ACL75535.1" + /translation="MKEFLEVFKYTFKENVRKKSFIISTVLILVIVVAAMVIPAAISK + SRTGGNLNPKEQTQTEASNIKTVYFIDKTGIFEQETNGLQHQMSGFKLEKVPADKEEG + LKDQIKDKGESYMIVVSLKDNIPSVEYFTKQYGSGPNPEMISKAFKNVYVTTVLKGEN + VSEDVITKTLADLNINVNELGNSKVGGFVSSIFIVIILFFAIYFYGYGVSMSVASEKT + SRVMELLITSVKPSRIIIGKTAGMGVLGLIQLALIIGVGAVTYKAVFPTDFTIDGMKL + DLSGFTPFTFSMVIIYFILGYTLYALMYAVVGATVSKAEDVNSAMMPMSFIAIIAFYF + SYGTFAVPDSTAAKIASIIPFTSPFSVPSRLVSTSIPLWEIGVSLGVLLIAITFVGMI + SVKLYSYAVLHYGDRLKIGKLLQVSKDNKTVVDK" + gene 1443133..1444182 + /locus_tag="Ccel_1179" + CDS 1443133..1444182 + /locus_tag="Ccel_1179" + /inference="protein motif:TFAM:TIGR00218" + /note="TIGRFAM: mannose-6-phosphate isomerase, class I; + PFAM: mannose-6-phosphate isomerase type I; + KEGG: cno:NT01CX_1588 mannose-6-phosphate isomerase, class + I" + /codon_start=1 + /transl_table=11 + /product="mannose-6-phosphate isomerase, class I" + /protein_id="ACL75536.1" + /db_xref="InterPro:IPR001250" + /translation="MYYPIKFRPVYKDYIWGGRYFEKLGRELPKGVVAESWEVSCHKN + GLSVIANGEYAGRTLIEFIKSDTVGVLGTNFPYECSEIPLLVKLIDAHDKLSVQVHPD + DCHAAVFENGFGKNEMWYIMDAKPGAKLVAGLKEDVTREKFIRAVSENRIEDCLLQVE + VMPGDVISIPAGLVHAIGEGIVIAEIQQTSDITYRVFDYNRVDGNGNKRPLHLEKALD + VINFNAGRRKIKYEGVKVKINDTCSKTVFLANRYFACERYDLNGGFKEKCDGSKFHIY + IFMEGNGIIQTGDVKVSIKAGETVFLPAAVGEYTVSGQLKALKTYIPDLISDIVDPMR + NAGCSNSEIYKVLSC" + gene 1444211..1444921 + /locus_tag="Ccel_1180" + CDS 1444211..1444921 + /locus_tag="Ccel_1180" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cno:NT01CX_1191 ABC transporter, ATP-binding + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75537.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MIAINNLTKSYSKFKAVDGVSLTAKPGEITILLGPNGAGKSTTI + KSIAGLLKFEGEITIWGCPNKTLDAKKVFGYIPETPALYDLLTPMEHAEFIAKAYKLE + SGWEDKARAIFERLEIYDKKDKYIRELSKGMTQKLSIALALLIEPKAVLFDEPLVGLD + PKAINEVLKILVELRSQEKSILVSTHIIDTINDVWDRAYIMNKGKIVSEITKNDFKGR + DLKTIFFELTGEEEECRQ" + gene 1444909..1446465 + /locus_tag="Ccel_1181" + CDS 1444909..1446465 + /locus_tag="Ccel_1181" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbl:CLK_2533 ABC transporter, permease + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75538.1" + /translation="MQAIMYLIKRAYINKIKRAFKSIPSAILTVLGVVGFLFVFISSF + KMKKAPFQSASSETIIAAVVLLIGVLLYNSFLSRDTGILTMADANFLFTGPFEKRQVL + LYLLVSVAPASLMIGFFMCFYLPFLMGPALSFPKYIITLVIISLFLGVVFLSYYYIYI + VDSEHTGFRKKSKTVFWAFIGVLAVIFAVMLFNNNFELRITVQKYFGSSWYNWVPLFG + WTKWAISSLLGGNMLTGFIPPVCLLLASNALLGILLYNVKADFYEKTLEDSVSLQKIM + DDIKTSGKADSLAFSKVKKRAVSVKFRTGASAIYSKQMLESRKMGVLSNYRELLIGLF + YVGFGLIFGLNFNFVFTMVSFGALSMSLNDSWHRDFKKPYVFLIPENSFNKVIYSVLP + GLVKTIINGSISITVAAIAYKLSPSAWSSYILVFLSFALLFVFAEVFTYRIIGSSSNA + MVVTMLRMLFVIATCVPAFIILIIISVLSNGVPNLTQIAICMLAVNMVFSVLLAYLSK + GIFEQSELME" + gene 1446649..1447644 + /locus_tag="Ccel_1182" + CDS 1446649..1447644 + /locus_tag="Ccel_1182" + /inference="protein motif:PFAM:PF01891" + /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiM + protein; + KEGG: cth:Cthe_1803 cobalamin (vitamin B12) biosynthesis + CbiM protein" + /codon_start=1 + /transl_table=11 + /product="cobalamin (vitamin B12) biosynthesis CbiM + protein" + /protein_id="ACL75539.1" + /db_xref="InterPro:IPR002751" + /translation="MHMGDFLLSPAVGGTVMTAAVGTAAVSIKKVRDMDEKKISLMGV + MSAFVFAAQMINFTIPGTGSSGHLAGALMLSILLGPYAGFLSIAAILLIQAMFFADGG + LLAYGCNVINIGFFACFIAYPLIYRTVTKKGLTRTRLMTGSILASVAALQMGAFSVVI + ETLLSGKTELPFAQFALAMQGIHLAIGAVEGVVTAVVVSFVWKVRPDIINAEPSDIKK + KGYRSIIAGFLVAAALLAGGVSLFASANPDGLEWSIGKVAGEKEIKGETQVHKSLEKA + QQDIALLPDYSFKEQENANESAGTVVSGLVGSGITIGLVVLAGYLIKLMKRKKAN" + gene 1447668..1448465 + /locus_tag="Ccel_1183" + CDS 1447668..1448465 + /locus_tag="Ccel_1183" + /inference="protein motif:TFAM:TIGR02454" + /note="TIGRFAM: cobalt ABC transporter, inner membrane + subunit CbiQ; + PFAM: cobalt transport protein; + KEGG: cth:Cthe_1802 cobalt ABC transporter, inner membrane + subunit CbiQ" + /codon_start=1 + /transl_table=11 + /product="cobalt ABC transporter, inner membrane subunit + CbiQ" + /protein_id="ACL75540.1" + /db_xref="InterPro:IPR003339" + /db_xref="InterPro:IPR012809" + /translation="MTDITGALYEIKHLDELSKRHNIVNNIHPLVKLIVTLAYIGILA + SFDRYQVAALIPFIMYPAVVLMICEIPVGKIIKRVLALEPFIIVAGILNPVLDRNIVH + VGNITLSSGWLTLIALIIKSTLMVSAGFLLIATTGIDDIAGAMRMVRIPSIFVLMFLL + TYRYIFVLIDEAERLYKGYSLRAPGQRGVKIKVWGSMLGQLLIRSFNRAQVIYQSMVL + KGYNGRYDVSGHKGFKYTDGLYLLIWGVFLLTARLINIPMFIAGIFY" + gene 1448485..1449249 + /locus_tag="Ccel_1184" + CDS 1448485..1449249 + /locus_tag="Ccel_1184" + /inference="protein motif:TFAM:TIGR01166" + /note="KEGG: cth:Cthe_1801 ABC transporter related + protein; + TIGRFAM: cobalt ABC transporter, ATPase subunit; + PFAM: SMC domain protein; ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="cobalt ABC transporter, ATPase subunit" + /protein_id="ACL75541.1" + /db_xref="InterPro:IPR003395" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005876" + /db_xref="InterPro:IPR017871" + /translation="MSHHKIELEEVSFSYPDGHQALDDITFLLGHGESVGVVGANGAG + KSTLLSILSGILFPQKGNVRIGDIPVTKKTLAEVRRSIGLVFQEPDDQLFMTSVYDDV + AFGPRNYQLDEKEVEERVNHALEEVGIPHLKDRPPYKLSGGEKKLAAIAAVISMEPDI + LIMDEPTASLDPKARRKIMNILKGFRHTKIITSHDLDMIMDMCERTIVLKNGKIAADG + PTTDILGDSGLMERCGLELPLAMQNCPVCGKTKPFE" + gene 1449495..1449926 + /locus_tag="Ccel_1185" + CDS 1449495..1449926 + /locus_tag="Ccel_1185" + /inference="similar to AA sequence:KEGG:Cthe_1015" + /note="KEGG: cth:Cthe_1015 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75542.1" + /translation="MRIAVIDGQGGGIGKLIIEKLRSAFGNEIDLLALGTNALAASLM + LKAGANEGASGENAILFNAPKVDIIIGTIGIVCANSMLGELTPVMAAAIAQSAAIKIL + IPLNRCNIIVTGTKDEPLPHHLDDAIALVGNVIRSDKSVRG" + gene 1449913..1450107 + /locus_tag="Ccel_1186" + CDS 1449913..1450107 + /locus_tag="Ccel_1186" + /inference="similar to AA sequence:KEGG:Daud_0289" + /note="KEGG: dau:Daud_0289 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75543.1" + /translation="MCEANVYLVDKNGRETLVLDSVDKVIPGKNEIILENIYNERKAV + RARIKEMELVEHRIVLESID" + gene 1450195..1451076 + /locus_tag="Ccel_1187" + CDS 1450195..1451076 + /locus_tag="Ccel_1187" + /inference="protein motif:PFAM:PF07719" + /note="PFAM: TPR repeat-containing protein; Sel1 domain + protein repeat-containing protein; Tetratricopeptide TPR_2 + repeat protein; + SMART: Tetratricopeptide domain protein; + KEGG: aoe:Clos_1403 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="Tetratricopeptide TPR_2 repeat protein" + /protein_id="ACL75544.1" + /db_xref="InterPro:IPR001440" + /db_xref="InterPro:IPR006597" + /db_xref="InterPro:IPR013026" + /db_xref="InterPro:IPR013105" + /translation="MINKAPRLSLYFYNKALNICLKNGLEVDFIDLVLNIAVTLDTLG + KQEDAVKTYNKVLEMDSNEARAYYGLAIIYDERKEFDKAIEMYKKAIEINPDYSKAYF + FLANSCDESGRKDEAAEYYEKAAELEPYHFWAYNNLAAVYEEIGKYDKALIAIRKGLE + LEPNHFKALFNAGVIMNRLGYTQKSIAYYDTSIEKNPRYAYSYLNLSLIYMEENDIEK + AIEVISKGVRFNPEASFLYYNRACFYVHTGNLNHALDDLITATDLSSELEEYMKTDNE + IDPLREMELYKKRFAYI" + gene 1451501..1452652 + /locus_tag="Ccel_1188" + CDS 1451501..1452652 + /locus_tag="Ccel_1188" + /inference="protein motif:PFAM:PF00266" + /note="PFAM: aminotransferase class V; + KEGG: csc:Csac_1303 aminotransferase, class V" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class V" + /protein_id="ACL75545.1" + /db_xref="InterPro:IPR000192" + /translation="MEKEKLLMTPGPTMVPPRVLEVMRRQIIHHRTKEFETIYDELEE + DLKFVFQTKNMVLMFSSSGTGAMESAIVNLFSQGDKVLAISIGAFGDRFADIASTYGL + NVQKLAVNWSEAVNVSEVKKILDADVNNEIKAILVTHNETSTGVTNDIEALGKLTKDT + ERLLVVDAISSLGGLDLQMDNWGIDLVVTGSQKALMAPPGLAYAALSDKAWEAVGKSK + LPKFYWDYKKYRKGLLKESENPPYTPAISLLIAQAEALKMMKEEGLENVYARHKKLAL + ATQAGVKALGLELFPDEKVSSYIITAVKAPEDIDIAKVIKTMNLKYDIMITGGQKHLK + GKIFRIGHCGYTDGLDLIKTFAALEYSLSEAGYKVEMGASVGAVQKALL" + gene 1452694..1454301 + /locus_tag="Ccel_1189" + CDS 1452694..1454301 + /locus_tag="Ccel_1189" + /inference="protein motif:TFAM:TIGR01327" + /note="TIGRFAM: D-3-phosphoglycerate dehydrogenase; + PFAM: amino acid-binding ACT domain protein; D-isomer + specific 2-hydroxyacid dehydrogenase catalytic region; + D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; + KEGG: csc:Csac_1304 D-3-phosphoglycerate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="D-3-phosphoglycerate dehydrogenase" + /protein_id="ACL75546.1" + /db_xref="InterPro:IPR002912" + /db_xref="InterPro:IPR006139" + /db_xref="InterPro:IPR006140" + /db_xref="InterPro:IPR006236" + /translation="MKIIVTERIAEDGINYLKENGHEVDTRYGISHEELLETIEDYDA + IIVRSVTKVNEELLQRASKLKVAGRAGNGIDNIEVPACTKRGIIVVNTPESNIMAAAE + LAVGHAYAIFRNIPQAHWAGKAQNDFRRSRFNGNELDEKTAGIIGLGRIGSIVATKLK + GSNMKVIAYDPYITDEKFKKLGVERCDTLEELLKQSDLISLHTPKTSETYGMIGEEQL + KLCKKDVRIVNAARGGLVNEEALYNAIKEGHVAAAALDVLDPEPNYDKKPEDQDYQNK + LFELDNVIITPHLGASTAEANYNVGTAVSKLVSDALKGEMVAAVNMPPMKNKDLNEMK + PYLDLAEILGKIYYQAEKETVNKIEIVYSGELAEQETKILSLSVLKGFLDIVIKEKVN + YVNAEFIAKNMGISIVESKTSQLEKYTNLITVKFFTKSKVLSVSGTVFAIQEIRVVDF + FGYKLDFEPTPYVLAIQNVDVPGIIGQIGTILGASDINIAAMQWSRNHKGEKAVAFVS + VDCEVPANVLELLKKINGVLKVTLLKF" + gene complement(1454359..1454805) + /locus_tag="Ccel_1190" + CDS complement(1454359..1454805) + /locus_tag="Ccel_1190" + /inference="protein motif:PFAM:PF01047" + /note="PFAM: regulatory protein MarR; + KEGG: cbl:CLK_1389 MarR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MarR family" + /protein_id="ACL75547.1" + /db_xref="InterPro:IPR000835" + /translation="MLAKEDMNSISNDLFLLVLHLSGRIFNPSTMFKGLPIPPSHTKV + LFRLAKLGPCPVSHLANDLIISRPNMTPIIDKLIAEGYADRYDAPNDRRIIMVRLTEK + AHTLLHSIEQKAKSLFVEKLSALDEKDLLNLKNIIPELNNIVLKIK" + gene 1455106..1457373 + /locus_tag="Ccel_1191" + CDS 1455106..1457373 + /locus_tag="Ccel_1191" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: bwe:BcerKBAB4_2432 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75548.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MGKLMKHLKPHIISIIGIVLFLFIQAYCDLSLPDYMSHIVNVGI + QQGGIENAVPDIIRKTEMDKITFLMNDDDKKNVLDNYVLIEKGKASQEDMDKYLKKYP + EIKNNDVYKLNTSDNAVIDKINTAVGKPMIFVGAIEGSIKMPDTSSEKNSNTTGDSQM + KKLFANVPKGTDPFTVIAKLPKEQLEEIMKTVNEKFEGMPDSIITQSATTYVKAEYNT + LGRDTGSLQSNYILIAGLKMLFISLISMVATVIVGLIAARVSAGVGRSMRKNVFENVV + GFSNAEFDKFSTSSLITRSTNDIQQVQIFLVMLLRIVFYAPILGIGGVLKVLKTDTSM + TWVIGVGVLAIMILVAILFAVAMPKFKSMQKLVDRLNLVTRESLTGMLVIRAFGTQKT + EEQKFEQANTNFTRNNLFVGRVMSAMFPAMMLLMNGVMILIVWVGAHQIDMGNMQVGN + MMAFIQYAMLIIMAFLMISMVSIILPRASVSITRIGEVIDTKGSIKDPAASGNFVKEM + KGNVEFKNVSFRYPGAEDDVISNVSFTAKPGQTTAFIGSTGSGKSTLINLIPRFYDVT + EGQILIGGVDIRDVSQHDLRQKIGYVPQKGILFSGTIESNLKYGYESASEEDIRTAAE + IAQAADFINEKEEGFKTDISQGGTNVSGGQKQRLSIARALVKKPEIFIFDDSFSALDF + KTDAALRRALKEKIKGATILVVAQRISTVMTADQILVLDEGQVVGIGTHRELMETCDV + YKQIALSQLSKEELA" + gene 1457370..1459247 + /locus_tag="Ccel_1192" + CDS 1457370..1459247 + /locus_tag="Ccel_1192" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: bwe:BcerKBAB4_2433 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75549.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MSDRTINREKSGKRDHMGGGPMGGGPMGMKTEKAKDFKGTIKKL + LAYMKPYKLSMIIVLIFAIGSAGFSIVGPKIMGKAVTKIYLGLVEKVSGTGKGINFEY + IGKTLLFLIGLYVISAIFSFIQGYVMSGVAQKVSYRMRKELSQKINRMPLKFFDKVTH + GEVLSRVTNDIDTVSQTLNQSLSQIFSSFTILIGVLIMMLSISWLMTLASVLIIPFSV + IFISLIVKKSQKYFKSQQEYLGHVNGHVEEIFSGHNIMKAFNGEKKAIEQFDSMNNTL + YKSAWKSQFLSGMMFPIMGFIGNIGYVLVTILGGWLTIKNKIEVGDIVSFIQYVRTFQ + QPIGQAAQIANVLQSTAAAAERVFAFLEEEEETKDVSNPVDTENVKGGVEFRNVQFGY + NPENIIINDFSAKVKPGQRVAIVGPTGAGKTTMVKLLMRFYDLNSGDIFIDGININDF + KRNDLRDLFGMVLQDTWLFNGSIMENIRYGRLDATDEEVKEAAKAAHAHHFIKTLPEG + YNMILNEEASNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQRAMENLM + KDRTSFIIAHRLSTIRDADLIMVMKDGDIVEQGNHEELLTANGFYASLYNSQFEISEV + S" + gene complement(1459325..1460629) + /locus_tag="Ccel_1193" + CDS complement(1459325..1460629) + /locus_tag="Ccel_1193" + /inference="protein motif:PFAM:PF06245" + /note="PFAM: conserved hypothetical protein; + KEGG: cth:Cthe_3196 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75550.1" + /db_xref="InterPro:IPR008323" + /translation="MDNYKKTLSELGLFVPKIMLPDSKYQLEKWAVVACDQYTSERSY + WEKVAELTKGNPSTYNIIFPEVYLEDGDNDTRINTINNNMENYIQSGIINELDECFIL + VDRKTSHTQSRKGLMVALDLEHYDYTKGSSTLIRATEGTVIERLPPRIKIRQNAPIEL + PHIMVLIDDPDKKVIEPLAQKADTLEKLYDFELMMNGGHIKGYHVSDKKDISAVADAL + RQLSDLESYRNKYGLENQNDVLLFAVGDGNHSLASAKGHWENVKLCLSYEEQQNHPAR + YALVELVNVHDEGLVFEPIHRVLFNVDSKNLLKEFALYYKANSKNKASKEHTFKYITS + DGSGEIQIDNPVSNLEVGTLQAFLDYYIKEHPQVKIDYIHGEDVVTKLGAQPGNMGIY + LPSMNKTELFKTVILDGALPRKTFSMGEAEEKRFYLECRKIK" + gene 1460846..1461382 + /locus_tag="Ccel_1194" + CDS 1460846..1461382 + /locus_tag="Ccel_1194" + /inference="protein motif:PFAM:PF05239" + /note="PFAM: PRC-barrel domain protein; + KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="PRC-barrel domain protein" + /protein_id="ACL75551.1" + /db_xref="InterPro:IPR007903" + /translation="MYSHVLGLPVISASNGLKIGNLKDVVFSKENKGVIAFVMEKGGN + PVKGNVVMLHDVLSLGNDALIVSNSNCLLNYRKFKKSIEISEKIKLLGLKIYTRQGED + IGVVQDILFDYRTGKVEGVKVSDGLVQDILGGRNILPFIGKVEISNSNILIESGAVEE + MVSTGGGLRSRLGNNTLL" + gene 1461400..1461579 + /locus_tag="Ccel_1195" + CDS 1461400..1461579 + /locus_tag="Ccel_1195" + /inference="similar to AA sequence:KEGG:Cthe_3198" + /note="KEGG: cth:Cthe_3198 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75552.1" + /translation="MLRNFTKGLVIGGLIGASISVLTNPEVVDPRMRRRMMKSGRKIL + HRSNNMLGEMIQMFR" + gene 1461665..1462714 + /locus_tag="Ccel_1196" + CDS 1461665..1462714 + /locus_tag="Ccel_1196" + /inference="protein motif:PFAM:PF01594" + /note="PFAM: protein of unknown function UPF0118; + KEGG: cth:Cthe_3199 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0118" + /protein_id="ACL75553.1" + /db_xref="InterPro:IPR002549" + /translation="MINTRKIIFYIILVLLLIGTAVFVYYYIDKLIKILLPFFIAALI + AYIIYPLVIRFERKGIKRSVSIILVYFFIALTLIFFGVYIMPEVLNNGKELFKTLPSI + TSSYREYFNNCISRIKASKWPPEVKNLIFNEINYGSGFLQVYAARIIKKTLSVLASSL + VIMLNIILSMIIAYYFLKDAETLKNSALMLVPKKMRNDIINTGRELNAIATHFIQGQL + MTALIVGTMETMGLYLVRVKYPFALGLLGGVANIIPYFGPFLGAIPAIAVALLQSPYK + AALAALVFIVVQQIDNAFISPKIIEGKLGLHPVTTIIAVLIGGEFFGIIGMLIGVPVT + AMLKVILKKVVDLIV" + gene 1462781..1463017 + /locus_tag="Ccel_1197" + CDS 1462781..1463017 + /locus_tag="Ccel_1197" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75554.1" + /translation="MKLARKTKLTIIVVIAGILILYGILDRIFSFNLNPKKVNDVGMV + LMIVAFVLLFSDNKRKNYSSTDETNSDKDKENHT" + gene 1463360..1463599 + /locus_tag="Ccel_1198" + CDS 1463360..1463599 + /locus_tag="Ccel_1198" + /inference="similar to AA sequence:KEGG:Cthe_0323" + /note="KEGG: cth:Cthe_0323 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75555.1" + /translation="MKPIEILSLVIMAIGFISVYMAKTIVRKFDLAKKQNCEHESEMT + EQEVEEYKFNKAVFNIKIIGFIVSTLGIALLIIFR" + gene 1463632..1466283 + /locus_tag="Ccel_1199" + CDS 1463632..1466283 + /locus_tag="Ccel_1199" + /inference="protein motif:TFAM:TIGR00422" + /note="TIGRFAM: valyl-tRNA synthetase; + KEGG: cth:Cthe_0324 valyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="valyl-tRNA synthetase" + /protein_id="ACL75556.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR002300" + /db_xref="InterPro:IPR002303" + /db_xref="InterPro:IPR013155" + /db_xref="InterPro:IPR015413" + /translation="MDEQQNIAKQYDPGQVEDRLYKKWMDEGYFHAVPDKNKKPFTIV + IPPPNITGQLHMGHALDNTLQDILIRTKRMQGYSALWLPGTDHASIATEAKIVDAMAK + EGISKDMLGREKFLEKAWEWKKVYGGRIVEQLKKLGSSCDWERERFTMDEGLSRAVQE + VFLKLYDKGLIYKGERITNWCPKCNTSISDIEVEYEEQAGNFWHIKYPVKDSDEFVII + ATTRPETLLGDTAVAVNPEDERYTHLVGKTLILPLVNKEIPVIADSYVDKEFGTGCVK + ITPAHDPNDYEVGLRHNLPQIRIMDDNAIMNDNAGQYKGMDRYEARKKMVEDLEKLGL + LVKIEPHSHNVGTCQRCRTVVEPLISKQWYVRMKPLAEPAIDVVRNGTIKFVPERFSK + IYFNWMENIQDWCISRQLWWGHRIPAYYCQECGHMMVQGTAPDTCSKCGSNRIEQDPD + TLDTWFSSALWPFSTLGWPEKTEDLEYFYPTDVLVTGYDIIFFWVARMIFSGVEHMKQ + EPFKYVFIHGIVRDSQGRKMSKSLGNGIDPLEVIAQYGTDALRFALTIGNSPGNDLRF + SPEKVESARNFANKVWNASRFVLMNFDENLDFSKVDKKKFSIADKWIMSRINTVTKEV + SENIEKFELGLGLQKVYDFIWEEFCDWYIEMVKPKLYDRESEGRLEAQYVLNFVLRNA + MKLLHPYMPFVTEEIYTHLINDGRSIMISQWPEYSEELNFAEDEAKMTIIMDAIRSIR + NTRAEMNVPPSRKAKIIFVAAGEEEKATLAEGTSFFQRLASASDVTVQLNKDGILSDA + VGGVVHGAEIFIPLDELIDIEKEIERLEKEKKNLEGELKRVKGKLSNEGFVAKAPQKV + IDEEKAKQAKYQDMYDKVAERLESLKK" + gene 1466485..1468413 + /locus_tag="Ccel_1200" + CDS 1466485..1468413 + /locus_tag="Ccel_1200" + /inference="protein motif:TFAM:TIGR00552" + /note="TIGRFAM: NAD+ synthetase; + PFAM: Nitrilase/cyanide hydratase and apolipoprotein + N-acyltransferase; NAD synthase; + KEGG: cth:Cthe_0325 NAD synthetase" + /codon_start=1 + /transl_table=11 + /product="NAD+ synthetase" + /protein_id="ACL75557.1" + /db_xref="InterPro:IPR003010" + /db_xref="InterPro:IPR003694" + /translation="MDYGFVRVAAAVPELKVANCDFNAGEIIKAVRTADSQGAQFVVF + PELSVTSYTCGDLFLQTTLQKGALSSLEVIISETSSLECVIILGMPLTLDSRLYNCAV + IIKNGSILGVVPKCYIPNYSEFYEARWFSSGMDRPPETIDMLGKTVPFGIDILFEAVN + MDGLCFGMEICEDLWVPIPPSSNQALNGATLLFNLSASNDIVGKHEYREELIKLQSAK + CSAAYVYVSSGPNESTTDLVFGGHSLICEYGSVLAQSERFSFDKKMIMSDIDIQRLVN + ERFKNSAFKHKTNNTVFRKIPFYVKEQKDDKLLRLIDPHPFVPSDPNARNKRCEEIFN + IQTSGLGKRLRHTGLNKCVIGISGGLDSTLALLVIVKTYDKLGLDRKNIHAVTMPGFG + TSSNTLGNSLELMRLMNVTSHRIDIKEACLKHFEDIGHDPLNYDVTYENVQARERTQI + LMDMANKIGGLVIGTGDLSELALGWATYNGDHMSMYAVNSGVPKTLVKYLVQWCADYL + FDNDTRNVLLSVLDTPISPELLPTDKEGCIQQKTEDIVGPYELHDFYLYHMVRYGAEP + DKVYKLAERAFEGKYDKATIKKWLETFLKRFFSQQFKRSCLPDGPKVGSISLSPRGDW + RMPSDADVGIWLKRLSEL" + gene 1468619..1469548 + /locus_tag="Ccel_1201" + CDS 1468619..1469548 + /locus_tag="Ccel_1201" + /inference="protein motif:PFAM:PF02457" + /note="PFAM: protein of unknown function DUF147; + KEGG: cth:Cthe_1166 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF147" + /protein_id="ACL75558.1" + /db_xref="InterPro:IPR003390" + /db_xref="InterPro:IPR014046" + /translation="MRFYIFCESIVFYKGVNCLLDAVAVYLKNILDFLSVYVPFTQPL + EILRSLVDVSIVSYLTYKLIQLVKETRAWQLVKGIVVILIVAMLSDWLKLRTLAYILN + RTIELAGFALVVVFQPELRRGLEQIGRSNFKGFFSFDEKDTTIHTTFTIEEIVKACTE + LSKTKTGALIVVERETKLGEIINTGTRLDSSVSAELIINIFTPNTPLHDGALILRNNK + LKSAACFLPLTDNPNLSKELGTRHRAALGITEVSDCIALVVSEETGKISYALNGGLTR + NLTSDILRKALNKNLLEKKSVNKKLAIWKGKSK" + gene 1469545..1470789 + /locus_tag="Ccel_1202" + CDS 1469545..1470789 + /locus_tag="Ccel_1202" + /inference="protein motif:PFAM:PF07949" + /note="PFAM: YbbR family protein; + KEGG: cth:Cthe_1165 YbbR-like protein" + /codon_start=1 + /transl_table=11 + /product="YbbR family protein" + /protein_id="ACL75559.1" + /db_xref="InterPro:IPR012505" + /translation="MKEFLKKDLTLKIFSILFAIFLWFAINPVQTEHYTVPLNVINEE + SLKSQGLVLNSKNFNKYVVVIVRDKGDVLNDIKDSDFEVTLDLSKVKSVNDKVIALEP + PVYLGRERINPKNIELKQKTITLDLARIEENPFIVQVETFGKLPAGYEIISKTAQPNT + VSIQDIDTVLDSVGSVKAFVDVTGLDRNLEIRKECKVYDKKGVEMPGLGKKLSVDIKI + EVGKRVPVIPITQGAPAESFLEGEYSVKPNSILITGDPDIMEGVNDVKTVPINLENAN + KTLNTQVLLQIPDGLKLVSSTREVNVTVQIIPLDVKTYEFEPRDITLEDTRNDNTLAY + EIIGPVTVTLKGKKEDMANVTVNSLLAKVNVDGLKDGEHRIPLQVTLPPNITQSGEAK + VLVKITKVPAEENQNMQQDTNK" + gene 1470829..1472409 + /locus_tag="Ccel_1203" + CDS 1470829..1472409 + /locus_tag="Ccel_1203" + /inference="protein motif:PFAM:PF01266" + /note="PFAM: FAD dependent oxidoreductase; + KEGG: cth:Cthe_1164 FAD dependent oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="FAD dependent oxidoreductase" + /protein_id="ACL75560.1" + /db_xref="InterPro:IPR000759" + /db_xref="InterPro:IPR006076" + /translation="MKILISNLVTTLDGGQEELEHQVLQKLRINSNSVKYIKVVKQST + DARKKLRFVYSVTCELIDGVRIPADKDIRVIEELPEEKLLPGNKPMGGRPLVIGVGPS + GLFCALVLAQNGYKPVVIERGGNINERIEKVDNYWKFGNLDTETNVQFGEGGAGTFSD + GKLTTRINDARCEKVLSEFHRFGAPDEILYKAKPHIGTDILKNVVVQMRMEIERLGGT + VLFNTKMVDIKSHNGEISRVYTNTNSFIDTNAVVLAIGHSARDTFEMLYRKGITFVQK + PFSIGVRIEHPQEVINTAQYGDAAGHPAIGPADYQLFCKFLQRTAYSFCMCPGGIVVA + SASEKDTIVTNGMSEFKRDRDNANSALVVSVGPGDFGSQHPLAGIEFQRKWERLAFNT + GGSRNGAPVQRLEDFLEGRVGGLGSVKPSYTGETRCADINNCLPDYVTDSMKQSISYF + DRRLKGFGMKDALLTGVETRTSSPVRIPRNDKLECIDLQGLYPAGEGAGYAGGIVSAA + VDGIRIAEQIIKTYSTPK" + gene 1472493..1473842 + /locus_tag="Ccel_1204" + CDS 1472493..1473842 + /locus_tag="Ccel_1204" + /inference="protein motif:TFAM:TIGR01455" + /note="TIGRFAM: phosphoglucosamine mutase; + PFAM: phosphoglucomutase/phosphomannomutase; + phosphoglucomutase/phosphomannomutase alpha/beta/alpha + domain I; phosphoglucomutase/phosphomannomutase + alpha/beta/alpha domain II; + phosphoglucomutase/phosphomannomutase alpha/beta/alpha + domain III; + KEGG: cth:Cthe_1163 phosphoglucosamine mutase" + /codon_start=1 + /transl_table=11 + /product="phosphoglucosamine mutase" + /protein_id="ACL75561.1" + /db_xref="InterPro:IPR005841" + /db_xref="InterPro:IPR005843" + /db_xref="InterPro:IPR005844" + /db_xref="InterPro:IPR005845" + /db_xref="InterPro:IPR005846" + /db_xref="InterPro:IPR006352" + /db_xref="InterPro:IPR016066" + /translation="MGRLFGTDGVRGVANLELTPKLAYQLGQAGAYVLTGETKHTPKI + LVGMDTRISGDMLEAALISGICSVGAQVVSLGVIPTPAIAYLTRQYDADAGVVISASH + NPFEYNGIKFFNSNGYKLPDAIEDKIEEIIQNGGEDLPKPVGQNIGFKCYQENALEDY + VNFVKGTITGDFEGIKVAIDCANGASFQAAPMALFDLKADVSVINNEPDGTNINSGCG + STHMRQLQAYVKEIKADIGFAFDGDADRVLAVDENGNIVDGDQIMAIIGLYLKDKGIL + SQNTIVATVMSNMGLDIMAKNKGLTIEKTKVGDRYVLEEMLNKGYMLGGEQSGHIIFL + DHNTTGDGLLTAVQLLKVLKDSGKKLSELAGVMEILPQVLINAKVTNEKKYKYLDDEV + IKKMCKELEDEFKGEGRVLIRPSGTEPLVRVMIEGKDKDIITRRAKELVRVIEGRLS" + gene 1474520..1476346 + /locus_tag="Ccel_1205" + CDS 1474520..1476346 + /locus_tag="Ccel_1205" + /inference="protein motif:TFAM:TIGR01135" + /note="TIGRFAM: glucosamine/fructose-6-phosphate + aminotransferase, isomerizing; + PFAM: glutamine amidotransferase class-II; sugar isomerase + (SIS); + KEGG: cth:Cthe_1162 D-fructose-6-phosphate + amidotransferase" + /codon_start=1 + /transl_table=11 + /product="glucosamine/fructose-6-phosphate + aminotransferase, isomerizing" + /protein_id="ACL75562.1" + /db_xref="InterPro:IPR000583" + /db_xref="InterPro:IPR001347" + /db_xref="InterPro:IPR005855" + /translation="MCGIVGYIGNRKAVPVLINGLSKLEYRGYDSAGVSVNEGGLLKV + IKCKGRLACLEEKLETEKLSGCMGIGHTRWATHGEPNDVNSHPHISQSGEIAVVHNGI + IENYMQIKEFLKDQGYVFKSETDTEVIAHLVEYYYEGDLVDAVMKVIDEIEGSYALGV + LCKDDENMFVCARKDSPLIIGLGEGENFIASDIPAILEYTRDIYILEDKEVAILTRDS + VQVFNSLGAAVDKEIFKVNWDVKAAEKDGYEHFMMKEMYEEPKVIRDTINPRIKDGEL + VLDNVTITEEDISKLEKIYIVACGTAYHAGVIGKYIIEKLCRIPVEVDVASEFRYRDP + LVSDKNMTIIISQSGETLDTLFALRESKKRGARILSIVNVVGSSIARDSDDVLYTWAG + PEIAVASTKAYNTQLTALYMVALELGLKKGTITKEEADAILGQLKQIPNDIEKILENK + EDIQKFAHQHYNAKSIFFIGRGLDYALSLEGSLKLKEISYIHSEAYAGGELKHGTIAL + IEKGTLVVCPMTQDNLFDKMVSNIREVKARGAVVLAITQEKHAEELKKTADTVITIPD + VDSLVAPISAVTPLQLFAYYMALEKGCDVDKPRNLAKSVTVE" + gene 1477087..1477326 + /locus_tag="Ccel_1206" + CDS 1477087..1477326 + /locus_tag="Ccel_1206" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75563.1" + /translation="MSESMTYKLLLFIDFKQEKFYVGNDLTNDFEFHLNPDEHKMIPI + KLFPLEKGLHDVFFVIVVAPNIKSLNKDFRRSTRV" + gene 1478349..1480970 + /locus_tag="Ccel_1207" + CDS 1478349..1480970 + /locus_tag="Ccel_1207" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; Kelch + repeat-containing protein; + KEGG: cth:Cthe_1398 cellulosome enzyme, dockerin type I" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL75564.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR006652" + /translation="MKIRNIKKIIILCLLIAFTCTSLLVPPVSANGPVSAPYNWNNVK + IGGGGGYVCGIVYNPTEKGLVYARTDMGGAYIRNKQTLEWEPITDWVSPDEWNLLGCE + SIATDPVDTNRVYIAAGTYTNSWTQMNGYILRSEDYGKTWERTELPFKFGGNMPGRSV + GERLMIDPNSNNILYFAARSGNGLWKSTDYGKTWAKVSSFTNVGNYVEDPKFEYSSDN + LGLCFVTFDSYKGTKGTPTKDIYVGVADKKNPLYVSHDAGETWNPVEGQPTESTFTQH + NSKALKIGIPQHAVVSSKGILYVTYCDRGGPYQCDDGAVYKYDTNTGVWTDITPPSGK + NWDGSPKYENYYGFSGLSVDAQNPDTLIISSLQSWWPDNFIFRSRDAGETWDAIWEHG + ESYPSRNLKYTMDISKAPWLTFGNKINAASGGLIKGDEIMNYPAPKLGWMMSALAINP + FDSDEMMYGTGATIYGSKNLTDWDSGKLVNIEVMGMGVEETAVLSLICPPISGVELIS + GVGDICGFIHKDLKVGPDMMMLTPRFTSTTGLDYAELNPKTIVRVGNTDKEQYEMIKK + SVAISKDGGATWAEVQPNISYTFPASTEDDIIQGGTVAVSADGSTFVWSTGTSQGVVC + FLNGGWKAVSTLPAGANVCSDRVNPKVFYAYAENTFYSSNDGGQTFTAVKTDLESSTS + KIKAVPNKEGHVWIPGSTTGLSYTTDGGKTINKVNDITRSDVVGFGKAKDGEDYLAIY + MCGEKDGLYAVYRSDDMAKSWVRVNDDQHQYGSINYSITGDLRVYGRVFVATNGRGIV + YGEPNSDSPTPTIGDINEDGLVDALDFAALKRYLLSSTTLTDKQLIAADVNRDGSVNA + IDLAVFKSYLLGIITSF" + gene 1481094..1481672 + /locus_tag="Ccel_1208" + CDS 1481094..1481672 + /locus_tag="Ccel_1208" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75565.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene 1481714..1482514 + /locus_tag="Ccel_1209" + CDS 1481714..1482514 + /locus_tag="Ccel_1209" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75566.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene 1482794..1484335 + /locus_tag="Ccel_1210" + CDS 1482794..1484335 + /locus_tag="Ccel_1210" + /inference="similar to AA sequence:KEGG:MA1194" + /note="KEGG: mac:MA1194 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75567.1" + /translation="MTSEFESCDKTKKILKSYKRMIYPEGMLSKCNSDIFSKFYRNIS + RNRMNYYKNHSCKLKKTTNTNEYYSEDKQAREDILPASEREIHNYLSRCRMATFQIQA + IMKLNGRLDFDRLKRAVRLSVDAEPVLASRFVEDENPYWKRLDNIDGITFCSLEETNN + ADETVMQFLQSPFDTDNGPQVKVKIIRLKHYDILGVKLNYVCCDGTAAKEYIQLLSHI + YSCIDQSNGNFIPESKIGSRKDQDGLFKELGIKYPELSWNPLRDPPKTKWIFPWAQRR + EDSILFEVCRIPKGNLNTIYQYGESRGATVNDLILTAFYRTMFKISKPKQGVPMDITS + TIDLRRYLPDNKSQAIRNLSGGIITRIARIMNETFDGTLSRVLSATTKIKESHSDVNR + NMGEENNEKSSLTYFRDYFEHMSQTLETSTKSPSYTGNECFPGFCNLGNISKSLIGFG + QNVVTDAYVIPPVIYAPGLLLLVSFYDDILTMSLGYCKASIDQRDMKAFLNSFKDELI + KGCKV" + gene 1484505..1484966 + /locus_tag="Ccel_1211" + CDS 1484505..1484966 + /locus_tag="Ccel_1211" + /inference="protein motif:PFAM:PF03061" + /note="PFAM: thioesterase superfamily protein; + KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase" + /codon_start=1 + /transl_table=11 + /product="thioesterase superfamily protein" + /protein_id="ACL75568.1" + /db_xref="InterPro:IPR006683" + /translation="MITRTSFPVSYSEIDKMGIVHHSYYPKWFEIGRRDYMNKAGIPD + SSIYSQGFYLPLCELECKFKSPAKYGDEIIVITVITFLSCVKVRFEYKVLNNRREEPI + AVGNTVHAWTDKDIKPLNIEKAAPQIYTSFKGLVETGGINQYKGTIFIHKK" + gene 1485005..1485811 + /locus_tag="Ccel_1212" + CDS 1485005..1485811 + /locus_tag="Ccel_1212" + /inference="protein motif:PFAM:PF01636" + /note="PFAM: aminoglycoside phosphotransferase; + KEGG: cac:CAC2572 aminoglycoside phosphotransferase" + /codon_start=1 + /transl_table=11 + /product="aminoglycoside phosphotransferase" + /protein_id="ACL75569.1" + /db_xref="InterPro:IPR002575" + /translation="MKKGKLLGSGVTAEVYEWGEDKVLKLYFNKYSNDDWVDHEAKVG + YLVHESGIMSPAVFDKVEINGRKGIVFERIFGNSIIERLIIEPWELYNYVQQLAVLQY + NIHKFSSNGLPTQKERFTSKIRASSSILRGRLKRILDYMESLPDGESICHGDLYFNNV + ILSGNKLVPIDWNSAYTGNPLGDVARTCLIIRPPNLSGVPDPMNMLTYYPRLLAHQVY + VNEYIKLAKVKYEDIDAWMLPVAASRLKDNIPGEKKWLMKLIDKRLAQLR" + gene 1485894..1487342 + /locus_tag="Ccel_1213" + CDS 1485894..1487342 + /locus_tag="Ccel_1213" + /inference="protein motif:PFAM:PF00668" + /note="PFAM: condensation domain protein; Alcohol + acetyltransferase; + KEGG: mac:MA1194 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="condensation domain protein" + /protein_id="ACL75570.1" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR010828" + /translation="MKGIYKYNKNSYNKMIRSVTRYYNDYAKLLEKKFTDPQYLYNQE + DRTGTFPANGHDIYNYVARYNMANLQIQAIMKLNGRLDFDKLKQAVRLSIIEEPVLGC + RFIEDRKPYWKPLDNIDMINFCTLEEAEDMEQAIHNFIRGSIDLDKDPMVNVSLIRSS + RTDVLAIKMNHACCDGIGTQEYIKLLADKYSNLDLKNDTFISEPRIAGRKDQDRMFAE + LGITNQDSIFIPGSDISVPTWPFPWEQSGSNTTLMSVSRLPAEHLESISKYAKSKGAT + VNDYILTAYYRAMLRMGRPIYGMPMEIPVTVDLRRYLPDHKTLAIRNFSGSVNTRLIM + LINEPFDRTLKRVSNMMKKIKRGYPGLQSAIGLERLEKISFKDTLAYYQADTRKTQCT + CPLYFGDKCVPTLSNLGILSKTLIKFGNNTVIDAFILPPVVRAPGLLLMTSTYNSVLT + LAVGYYKSTVSKENIIKLLSIIKNELIQGYKS" + gene complement(1487385..1488146) + /locus_tag="Ccel_1214" + CDS complement(1487385..1488146) + /locus_tag="Ccel_1214" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; KR + domain protein; + KEGG: swd:Swoo_1668 short-chain dehydrogenase/reductase + SDR" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75571.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR013968" + /translation="MINPIDLSGKNILVTGASSGIGKGIAIYLSKVGANIIMAARNEE + KLKETYNELEPGNHSYYLIDLNNLDEIEGMIDNICSDGRKLNGIVHSAGISSTIPIQY + IKLDNLKSIMSINFYSFIELVKHFSKRKYNDNGGSIVAISSISSKVGARGLAAYCASK + GALDSSIRPIALELAAKNIRINSIAPGMIKSQIYDGLIELVNNNNFETDLKKRQIMGL + GKPEDVASAAAFLLSDASKFITGTSIIVDGGYLAH" + gene complement(1488143..1489198) + /locus_tag="Ccel_1215" + CDS complement(1488143..1489198) + /locus_tag="Ccel_1215" + /inference="protein motif:PFAM:PF08541" + /note="PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] + synthase III domain protein; + 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; + KEGG: mex:Mext_2805 beta-ketoacyl-acyl-carrier-protein + synthase I" + /codon_start=1 + /transl_table=11 + /product="3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase + III domain protein" + /protein_id="ACL75572.1" + /db_xref="InterPro:IPR013747" + /db_xref="InterPro:IPR013751" + /translation="MANGILKNVEIKGIACAVPERIVDNKEFFGVFGEESVQKFINMT + GVKTRHVAFDEQCASDLCYIAAKNLMERLNWEASTIDALIFISQTPDYAVPATACVLQ + YRLGLSEECIAFDINLGCSAYVYGLWQAATMISTQNINRVLLLVGDTSNFGINPNDSA + TAMIFGDGGTATALEKTEGKDITYFLKTKGSGYKYIMVPAGHARNRNKTIMDKSECEL + SMNGADVFNFTITDVQKSLADFMADYSIGKNDVDMYVFHQANLFIIKHLVKKLGIPTE + KVPISIDRFGNTSGESIPLTLVDALGSEQSDDTIKLLLCGFGVGLSYGAIYLEMKKSA + CMPMIYTDYYFDGVDKK" + gene complement(1489210..1489428) + /locus_tag="Ccel_1216" + CDS complement(1489210..1489428) + /locus_tag="Ccel_1216" + /inference="similar to AA sequence:KEGG:Sden_3111" + /note="KEGG: sdn:Sden_3111 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75573.1" + /translation="MTYKEKLNLLEELLLLEKDTLDEATELDSISEWDSMAVISTIAM + FDSVYSMDIKSEEIKKFKTVKDIIDKME" + gene complement(1489527..1490996) + /locus_tag="Ccel_1217" + CDS complement(1489527..1490996) + /locus_tag="Ccel_1217" + /inference="protein motif:PFAM:PF07247" + /note="PFAM: Alcohol acetyltransferase; + KEGG: mac:MA1194 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Alcohol acetyltransferase" + /protein_id="ACL75574.1" + /db_xref="InterPro:IPR010828" + /translation="MKFKLKPCNNKINMSKLPPTTGSYFRKLKKSLAKYSGINKLNFS + NTVNSSEIIPANAYDICNYVAKYKTANFQIQAIMKLDGRLDFDKLVKAVRLSVDAEPV + MGCGFIKKCSPYWKRFDDIDNINFCSIVETDNTEEAVQHFLESPLHMDNAPMFMVKLI + RSGTHDTLGVKINHVCSDGAGAKEYIQLLSDIYSRIDDGDMEYTPNPSVRNREDHKNL + LCALGKESLDTSWNLHEQVALPTWRFHWKNKRMGDTRFVVCKLPYGHIDILKNYAKSR + NATINDLILTAIFRAMFKISKPPYGVPMDIPITIDLRKYLPDHKAQAIRNLSGGVVIK + IGRKPHEPFEGTLSRIVSLTKYFKNKHPSVASTRMADYIEKMSFRQICSYFKALSHVN + ELESLSPFSFVDVCSPVLSNMGLISKSLIRFGKNVVTDAYIIPPVVRAPGILLVASTY + NGIITLAVGYYKPSVRKSTMEGLLNKIKDELVEGCRQQP" + gene 1491372..1492682 + /locus_tag="Ccel_1218" + CDS 1491372..1492682 + /locus_tag="Ccel_1218" + /inference="similar to AA sequence:KEGG:Cthe_0615" + /note="KEGG: cth:Cthe_0615 phenylacetate-CoA ligase" + /codon_start=1 + /transl_table=11 + /product="phenylacetate-CoA ligase" + /protein_id="ACL75575.1" + /translation="MQYWNSTYECMSRDKMTEVQTKRLIDTVKKVYHNVPFYRSKMQK + AGIEPGDIKSLEDLKKLPFTKKQDLRDTYPYGMFAVPMNEIVRIHASSGTTGKQTVVG + YTRGDLDIWAEVVARSLYCAGANKESIVQVAYGYGLFTGGLGVHYGVEKIGASVIPAS + GGNTKRQLQIMKDFGTTILACTPSYALYLAEEMEEMGIDRSELRLKAGIFGAEPWSGN + MRKKIETNLGIMAMDIYGLSEIMGPGVSIDCPCMCGLHVQEDHFIPEIINPETEEILP + PGTYGELVFTTITKEGLPLVRYRTHDISSLNYEKCQCGRTLVRMSKVTGRSDDMLIIR + GVNVFPSQIEHVLLEVGETAPYYLLIVDRVDNLDILEICVEMSQNMFSDEVKKVEDLE + KKIKKEVESTLGINANVRLVEPKTIERSEGKANRVIDKRKIQYS" + gene 1492827..1493010 + /locus_tag="Ccel_1219" + /pseudo + gene complement(1493189..1494235) + /locus_tag="Ccel_1220" + CDS complement(1493189..1494235) + /locus_tag="Ccel_1220" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75576.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(1494391..1495899) + /locus_tag="Ccel_1221" + CDS complement(1494391..1495899) + /locus_tag="Ccel_1221" + /inference="protein motif:PFAM:PF06964" + /note="PFAM: alpha-L-arabinofuranosidase domain protein; + KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="alpha-L-arabinofuranosidase domain protein" + /protein_id="ACL75577.1" + /db_xref="InterPro:IPR010720" + /translation="MDNAKMILNKDYVVAPVDKRIYGSFIEHLGRAVYGGIYEPGHPS + ADKFGFRQDVSEMIRELQVPIVRYPGGNFVSGYNWEDGVGPVDKRPRRTELAWATVET + NEIGTNEFVTWAKEVGTEVMMAVNLGTRGVDAARNLIEYCNLTQGTYWSDLRKSHGYS + QPHNIKTWCLGNEMDGPWQIGTKTAEEYGRLACETAKVMKMVDPTIELVACGSSGSGM + PTFAQWEATVLEHTYEHVDYISLHTYYGNQDNDTANYLAKTMDMDAFIKSVVATCDYV + KAKKRSKKKINLSFDEWNVWFHSNEADKKIDRWSIAPPQLEDIYNFEDALLVGGMLIT + LLKNADRVKMACLAQLVNVIAPIMTENGGSAWKQTIYYPYLHTSVFGRGTVLNTIMKA + PKFDTKDFTDVSAIDATAVINDNNDEITVFAVNRHMENNISLDVELNGFGQFEVIEHI + VLEHNDVKATNTKENPNNVVPNNNGNATLEDGSIKASLKNLSWNVIRLKKVK" + gene 1496109..1497011 + /locus_tag="Ccel_1222" + CDS 1496109..1497011 + /locus_tag="Ccel_1222" + /inference="protein motif:PFAM:PF01022" + /note="PFAM: regulatory protein ArsR; Helix-turn-helix + type 11 domain protein; + KEGG: bha:BH1869 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, ArsR family" + /protein_id="ACL75578.1" + /db_xref="InterPro:IPR001845" + /db_xref="InterPro:IPR013196" + /translation="MKTDISEKWLPVYEALSSRVRIKIINILAQNSLNIKQIAEELGL + SSAIVTMHVKKLEAAGIVHSERKSIKGAVQKICFLDVDSLEIQFPSRKAKVRSYHEFS + MPIGHYSDFSVTPTCGIATPEKVIGQFDDPRYFLDPDRVNAGILWFTEGFVEYRIPNF + LLSVQQPEELEISMELGSEAPGINSNWPSDISFFLNERIIGQWTSPGDYGNSRGKYTP + RWWSLQVGQYGLYKAIRIAQDGSYIDGIKVSDTTLSSLDIRQKYWSFRIAVLPESQNV + GGVTIFGKGFGNYSRDIMFKLYYK" + gene 1497206..1498234 + /locus_tag="Ccel_1223" + CDS 1497206..1498234 + /locus_tag="Ccel_1223" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: periplasmic binding protein/LacI + transcriptional regulator; + KEGG: cbe:Cbei_4462 periplasmic binding protein/LacI + transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="periplasmic binding protein/LacI transcriptional + regulator" + /protein_id="ACL75579.1" + /db_xref="InterPro:IPR001761" + /translation="MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDS + GSNKLITIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDF + ISQDVDVIAIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKE + GVNAAEWLVNYMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQ + TGEFTQAKGQEVMESFLKQYNDIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFD + AVKAAFKSMIAGDMNVSVECNPLHGPRVAELAKKLMNDEKVEKIQYVDEKVYPAEIAE + KELPNRQY" + gene 1498348..1499880 + /locus_tag="Ccel_1224" + CDS 1498348..1499880 + /locus_tag="Ccel_1224" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_4461 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75580.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MENGNREVLKMKNICKTFPGVTALSNVDFTLRSGEIHALMGENG + AGKSTLIKVLTGVEEFESGQIIIDGLNYPVINKSPQEAQVNGISTVYQEINLCPNLSV + AENIFIGRELKKAGRIDWKAINKRAKEILLNFNMDIDVTKSLDNYSVAMQQMVAIARA + IDISSKVLILDEPTSSLDENEVEKLFEVMRKLKSQGTGIVFVTHFLEQVYAVCDRITV + LRNGSLVGEYEVEKLPRVQLVAKMMGKEFDDLALIKKAAKEQEIKETKETIICAKELG + HTGTIKPFNLEIRKGEVIGLAGLLGSGRSELARVIYGADKADCGELEVNGQERSFKSP + IDSMKAGMAFCPENRKEEGIIADLSVRENMILALQAKRGMFKLISKKEQEELTDKFIN + MLQIKTADRETPIKQLSGGNQQKVILGRWLMTEPDFLILDEPTRGIDVGTKTEIQKLV + VDFAGKGMTVMFISSEIEEMLRTVNRMAVLRDGKKVGELDENELSQELVMKVIAGGDA + NV" + gene 1499873..1500925 + /locus_tag="Ccel_1225" + CDS 1499873..1500925 + /locus_tag="Ccel_1225" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: cbe:Cbei_4460 monosaccharide-transporting ATPase" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75581.1" + /db_xref="InterPro:IPR001851" + /translation="MYSQIIKKIAKYRLFWPLVCLFVVLGVNLIRTPDFFNISINSKG + VLYGYLIDIINRSSELIILAAGMTVCVASSAGTDISVGSVMAVAGAVTCFLLGTGDAY + NIPYVLAVLAGILAATACGAWNGFLVAKLKIQPMVATLILFTAGRGIAQLITGGNILY + IKVKNFKYLGSVLPGVPLPTPVFVAAAVVILTSILLRKSALGMYIQSVGINSKASKLI + GLNSTLIIFITYAFCGLCAGIAGSIATSRIYSIDANNVGLNMEMDAILAVALGGNSLA + GGKFSLAGSVIGAITIQALSTSLYSMGVSADQLPVYKAIVVIIIVSLQSQQTKKFFKN + FSQKIKIDKAGEKVAQ" + gene 1500922..1501947 + /locus_tag="Ccel_1226" + CDS 1500922..1501947 + /locus_tag="Ccel_1226" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: scl:sce3305 inner membrane ABC transporter permease + protein YjfF" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75582.1" + /db_xref="InterPro:IPR001851" + /translation="MIKSIRGKFSGNNFLLFITIILFFVLYISGMVIFADKGFGKPQV + FLNLFISNAGLIIAAVGMTIVLITAGIDISIGSVIAMTCMLLAWMMEKKSMDAWASIV + IVLVVGVVFGLVQGFLVSYLNIQPFIVTLAGLFFARGMTAIISDEMITITNKAFLGIA + NAKIYIPFISTVTKKGKVIHPYIYPSVILAIVVLIIAFIVMKYTKFGRSIYAVGGNEQ + SALLMGLNVRRIKLKVYALNGFLAALAGFAFALNSCGGFVEQARGFEMDAIASAVIGG + TLLTGGVGNVVGSLFGVMIKGTIESIITFQGTLSSWWTKIAIAALLCIFIILQSIFAA + LKRKRQF" + gene 1502003..1503469 + /locus_tag="Ccel_1227" + CDS 1502003..1503469 + /locus_tag="Ccel_1227" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: hau:Haur_2122 histidine kinase internal region" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75583.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR010559" + /translation="MKIKKYLGVSLKSKMRALMFIAIIPLLVFVFYLIFQVGTYSDYY + NAIYKSISVANDFSQKFKYDYDYSMYQIVIGSSNFQKEGISKKLEDANNKIKYLRNSA + LMAENKSTTKYMKDYIDSLKRSTEIIKKNMEADGPKYDKNLMILDNDIRTTTTMITDA + LQKYVYIETFEMNKVHNKIEVERKRNVTFTCIIFAVLLVVTLILAEIISHSITKPIKN + LCISTKLVGNGDFTTRVPDSESDEIAMLTTSFNTMIEKIGSLVEDVKLEQINLRKTEL + KLMQAQINPHFLYNTLDTIIWLAEGNKTKDVVSMVSALSRFFRIALSKGYDYISIKEE + EMLIRSYLQIQQYRYQDILEYEINIPEHMEQCSILKLTLQPVVENALYHGIKNKRGMG + KIVVEGYCEEDTIWFKVKDNGIGMNQQKVEQIKKLFNRPKEKDAPEQNGFGLFNVNER + IKLNFGAEYGLDVKSEYGIGSEFTICIPKITETRYYNI" + gene 1503491..1505089 + /locus_tag="Ccel_1228" + CDS 1503491..1505089 + /locus_tag="Ccel_1228" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: cbe:Cbei_4431 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75584.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYKIFLVDDEVVVRHGIRDCINWEQTDFVFSGEAPDGEFALPLI + LEIKPDILITDIKMPFMDGLELSQIIRKNMPWVKIIILSGHDEFGFAREAMRIGVTEY + LLKPVTADDLLKSLEKVKALIIDEKKERENAEKIKKQLADNAPLFKDKFLSELLLGLV + PPVEVIDNCEKLNINIISKFYIVEIIELERTKKDVPDGEYTEVLQAETLIDNIVVKNS + EIIKFRRILGEIILIIKGDNAKSMEETAYSLAQSLKYEVERKTSCILGINIGGVRERI + QGIMQSYKEAEEIKNYRYLYGKRKILGINDIKSDMGSKKDFIKIYMNSPYDFLKCGLK + SDVRYFVNDYIDNLNDIEMKSPIYIHYLFMDVVINAVRFIDELGGEIEKLIPWVANLE + SFVAGIDSIEKFGELTELTLNKILEFRDTRVEKKYDSIINKAKEYIQSNFSNSAISLN + SVSSYVNVSPSHFSTIFSQEAGENFIEYLTKVRVKKAMELLKTTSLKSSEIAYSVGYN + DPHYFCYIFKKAIGVTPKEYRSEA" + gene 1505662..1507269 + /locus_tag="Ccel_1229" + CDS 1505662..1507269 + /locus_tag="Ccel_1229" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 43; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_1271 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75585.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /db_xref="InterPro:IPR006710" + /translation="MFKKIKKFSVFMVALLFLSVYSFNLVFADYPIFYQRYTADPSGL + EANGRLYLYSSHDVYDPNKPGYIMNDITCISTDDLKNWTDHGEVFKASGWASLSWAPV + VVAKNNKYYMYFGNGAGGIGVSVSDSPTGPFKDALGKALINGSTPGVNPPSGFWCFDP + GAFVDDNGQAYLYFGGNGEGNTRVIKLNSDMISLNGSASGITAPIFFEDSWIHKYNGK + YYYSYSTNFSKGAATIDYMMSDNPITGFQYKGTVLANPPLNEGNNNHHTIFPFKGDWY + IAYHNRALAIANGAASGDARTYQRSVCIDKLNYNADGTMQKVTITTDGLKQLKYVNPY + VTNEAETMAQGSGINTEECTEGGRDVAFIENGDWIKVRGVDFGTAGAASFDARVASST + SGGNIEIRLDSLTGKLVGTCVVENTSGWQNWTTKTCSVSGTTGVHDLYLKFTGDSGYL + FNLNSWRFNTSGAKTVYGDLDGSGDINAIDFSLMKQYLLGSITKFPIEDGIIAADLDA + SGTIDAIDYVLLKEYLLGKRTQFPAEL" + gene 1507375..1509000 + /locus_tag="Ccel_1230" + CDS 1507375..1509000 + /locus_tag="Ccel_1230" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: glycoside hydrolase family 10; cellulosome + protein dockerin type I; Carbohydrate binding family 6; + SMART: cellulose binding type IV; + KEGG: cac:CA_P0116 xylanase" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75586.1" + /db_xref="InterPro:IPR001000" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MLSKRKTRKFRIFSTLFVALLCATIITSSFPLTADAAMATGKAK + FVGNIWYDGNAPSKYADYWNQITPENATKWGPCEPQQGVYNFSQAKAMYNYCKTNKIP + FKFHTLIWGSQYPNWLNNLSGTARKTAIENWYKAAAQNFPDAEYIDVVNEAMPGHAPF + PFKNDIGGDNGLYGTGWDWIVWSFEMARKYFPNSKLLINDYNVLNEWSCLDQYIPVVK + ILKARNLIDGVGCQSHGLEKTSAANLKSRLDRLAATGVPIYISELDLDIADDNTQKNK + MQELFPVMYEHSAVKGITIWGYLQGRTWIPNSHLLRSDGSERPAMTWLKQYMAKVPGE + DVPVETRSAFSKLEAESYNDQSGIQNVTCYEGTEAVGYTENGDYTVYKNIDFSNGATS + FQARVSSATTGGNIEIRLDSATGTLIGTCPVAGTGDWQKFLDAKCTVSGVSGKHDLYL + KFTGGSGYLINLNWFMFSNTPVSTDKIGDLNSDGQIDALDFQVLKKCILGTGTIENTK + LADLDANGTIDALDFVLMKQYLLGQITKFPADK" + gene 1509068..1510642 + /locus_tag="Ccel_1231" + CDS 1509068..1510642 + /locus_tag="Ccel_1231" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 43; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75587.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /db_xref="InterPro:IPR006710" + /translation="MKKVSKIAALLLVLTLFIPTVGYADNPIVQTLYTADPAPMIYND + TCYVYTGHDEDTLVNDFFTMNDWRCYSSTDMVNWTDNGSPLSYSSFSWAKGDAWAGQC + IQRNGKFYYYVPLTPKTGGTAIGVAVSDSPTGPFKDPLGKPLVSTGSGDIDPTVYIDD + DGQAYLYWGNPNLYYVKLNQDMVSYSGSIVKVPLTTASFGTRSKTDRPTTYEEGPWFY + KRNSLYYMVFAGGPISEHIGYSTSTGPTGPWTYRGKIMPTQGSSFTNHPGVADFKGNS + YFFYHNGALQGGGGFHRSVCVEQFKYNADGTFPTINMTTTGSTQIGNLNPFIKTEAET + ICWESGIETEKCSEGGMNVAFIENGDYIKVKGVDFGTGAAAFTARVASATDGGNLELR + LDSPTGKLVGTCAVTSTGGWQTWVDKTCTVSGAEGIHDLYLKFTGGSGYLFNFNWWKF + IKAGNTSVIGDLNGDKSVDAADYAMMKKYLLGLIEDFPAENDIEAGDLNKDSVIDALD + FAVFKKYLLGTIPSLP" + gene 1510665..1512137 + /locus_tag="Ccel_1232" + CDS 1510665..1512137 + /locus_tag="Ccel_1232" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: putative esterase; cellulosome protein + dockerin type I; Carbohydrate binding family 6; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75588.1" + /db_xref="InterPro:IPR000801" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MIKNILTKKTIWGMVAFVFALTLVFTVPDSKVQAAALPTTPPTG + YDRVQSNIPHGQVSYINYQSKATNSQRRARIYLPPNYSADKKYSVMYLLHGIGGNEDE + WYNNGAPNVILDNLIAAGKIQPFIVVLPNGNATGTGVSDGWTNFTKDLIESLIPYIES + NYSVYTDRNHRTVCGLSMGGGQSFNIGLPNLNLFPYVGAFSPAPNTLPNSQLFPNDGA + SAKQLLKFLFISYGTTDSLISFGTGVHNYCDSQSIPNTYFLIQGAGHDWNVWKQSLWN + YSQMICEKGFTDYGPVAPVSAFTQIEAESFTSQSGVQTETCTEGGLNVGYIENGDYVV + YNNVDFGSGATSFQARVASAGNGGNIEIRLDSITGPLVGTCAVKGTGDWQTWTDAKCT + VSGVTGKHDLYLKFTGGSDYLMNFNWFKFGNATQTLTGDLNGDASEDATDYALLKKYL + LGQINDFPVEDDINAGDMNKDGVIDALDFAVFKKILLGTI" + gene 1512213..1514453 + /locus_tag="Ccel_1233" + CDS 1512213..1514453 + /locus_tag="Ccel_1233" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 43; + SMART: cellulose binding type IV; + KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75589.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /db_xref="InterPro:IPR006710" + /translation="MQFKKVFSILLLVCLLVTQTTIVGAWQSDNDNGTYTNPILNADY + PDIYAIRVGSDYYMVSSTFVSFPSIPILHSKDLINWEIIGYVSSDLNGTGKSYNLTNT + FDDYGHGCWAPSIAYRNGTYYVGIYQAQGKFIMCTATNPAGPYTKTVYNQGFHDPALF + IDDDGTGYIVSEANDVKVTKLSADYKSVVNSQVTTRIEGATGNYLVEGTHVMKKNGYY + YIFRNSTPPESYTYCLRSKSIYGPYEMRILLNGPSISGGSQIHQGGPIDTTTGEWWFY + VFQDGQGLGRRDILIPMQWQNDWPILGDPSTVKNVSIAGKTYPMGTVPVTYKKPDVGA + TYPILTIPNSDEFSSTTMGVQWQWNHYPDNTKWSLSERPGYLRLHAKNANNLWRATNT + LTQRVEGPDCQGTIELDTTNMLDGDNAGLCLLNIPYGTIGVSKSGGVKRIVANINAKK + DTAGTITNGPTLTGNTVYLRAKADLISNKATFFYSTDNVNFTQLGGTLSMPFDLGFFQ + GDKFGIFNYTTASSGGYADINWFRYYTSAGPNTPIPDITLSAFEKIEAESYNSQSGIQ + NVTCDEGTEAVGYTENGDYVVYKNVDFGSGANGFNARVSSATVGGTIEIRLDSANGTL + IGSCPVAGTGGWQAFTDANCTVSGVSGKHDLYLKFTGESGYLFNINWFKFSNTSVISD + KLGDVNSDGQIDAIDLQLIKKYILGLGEIENIKTADLDGNGDVNAIDFSLMKQYLLGL + ITEFPG" + gene 1514537..1516147 + /locus_tag="Ccel_1234" + CDS 1514537..1516147 + /locus_tag="Ccel_1234" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 62; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75590.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR005193" + /db_xref="InterPro:IPR006584" + /translation="MNIFKKGFSIFLGLFMIISSFGSMVNAAANPNPSWNVDERVIFH + NQCSPYDYYAAKDPTIVYYNGKYLVYYTGANKSGGWQMCFTSASTISGLKTAPRTYMS + KIGESYFCAPELFYYEPQKLWYLVYQDGTHGAAYATTTTPDDPNSWSGPKSFGISGNM + GWDYYIICDDQYAYMYNTPSDGSGKLYMRKTTLANFPNKGWSTPTVACSNVFEGAAVY + KSLADGQYYMLIEAMIDGRSYELFTSSSAGGPWTLVNNKWATRSNLTKYNADKWTTNV + SHGELIRAGYNQKLEINDINKVDFLIQGTTNMNAEYQQIIWDLGLIRNYTGSPDTPVT + PRTAFEKIEAESWNDQSGIQNVTCDEGTEAVGYTENGDYSVYKSIDFGSGATSFQARV + SSATSGGKIEIRLDSATGTLVGTCTVSGTGSWQTFADVNCTVSGVSGKHDLYLKYIGD + SGYLINLNWFKFSNTPVVSDKLGDVNSDGQIDAIDLQLLKKYLLGSGTIENTKLGDLN + ASGDVDAIDFSLLKQYLLGQITKFPAQA" + gene 1516222..1517751 + /locus_tag="Ccel_1235" + CDS 1516222..1517751 + /locus_tag="Ccel_1235" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 43; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75591.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /db_xref="InterPro:IPR006710" + /translation="MKKVCKILVLLLIFTTLFSFVCYADNPIVQTYYTADPASMIYND + TCYLYVTHDEDTTVNNFYTMNEWRCYSTTDMVNWKDCGSVLSYKTFSWAKGDAWAAQC + IPRNGKFYLYVTLTNQYGARTVGVAVSDSPTGPFKDALGKPLIANNGAQDIDPTVFID + NDGQAYLYWGNGNAYYVKLNQDMISYSGSIVQVNPKPSGYIEGPWLYKRNNVYYLVYA + GMGSNGENIQYATSNSPTGPWTSKGAIMNSKNSFTIHPAITDFKGKSYFFYHTGDLPG + GGSYKRSVCVEEFKYNSDGTIPTIPITKTGPAQVQYLDPFVKNEAETICWESGVETEI + CSEGGMNVGFIENGDYIKVKGVDFGSGASSFVARVASETSGGNIELRLDSPTGKLVGT + CSVSETGGWQTWSDKSCTVSGAEGVHDLYLKFTGGSGYLFNFNWWKFEKSGTPTIVGD + LNGDDCVDAADYALMKKYILGLINDFPVDNDIEAGDLNKDGTIDALDCAVFKKLLLGI + I" + gene 1517840..1520707 + /locus_tag="Ccel_1236" + CDS 1517840..1520707 + /locus_tag="Ccel_1236" + /inference="protein motif:PFAM:PF07944" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate-binding CenC domain protein; protein of + unknown function DUF1680; + SMART: beta and gamma crystallin; + KEGG: sus:Acid_1242 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1680" + /protein_id="ACL75592.1" + /db_xref="InterPro:IPR001064" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR003305" + /db_xref="InterPro:IPR012878" + /translation="MLKTMSILLPCLLIFSLIFSVQIPLSASAANVELLKQFDMEQVK + ITDTYYVNALNKEVAYLQAIDPNRLLVGFKKTAGLSTTYSYYGGWENNTLIQGHTMGH + YMSALAQAYKNTKSDPTVNADLKSRIDLIISELQACQNKNGNGYLFATPATQFDVVEG + KASGSSWVPWYTMHKIMSGLLDIYKFGGNQTALTIATNLGNWIYKRVNAWDSATQSRV + LGVEYGGMNDCLYELYKLTGNGNHLTAAHKFDENSLFNTIAAGTNVLPGKHANTTIPK + FIGALNRYSTLGTSESSYLKAAQQFWAIVLKDHTYVTGGNSEDERFRDAGKLDAYRDN + VNNETCNVNNMLKLTKELFKATGDVKYADYYENALINEIMASQNPETGMATYFKAMGT + GYFKVFSSQFNHFWCCTGTGMENFTKLNDSLYYNNGSDLYVNMYLSSTLNWSEKGLSL + TQQANLPLSDKVTFTINSASSSEVKIKFRSPAWIAAGQNITVKVNGTPINVDKANGYL + DVSRVWQTGDTVELTLPTEVRVSRLTDSPNTVAFTYGPVVLSAGLGTESMTTQSHGVQ + VLKATKNVTIKETININTAASPSIDNWLANIKNNLVQTPGKLEFTLKNTDEDNHLVFT + PHYQRYKDRYGIYFKLGTYEGKQPTDNLLDNPDIESGNTTGWTVNGAGTIASSTVQKH + SGSYSLLHTGRTGAWNGPIQNITTKVQNGNTYTCSGWVILDNTASAPITMTIRKTDDN + GTSYVNIATATGSNSSWVQLSGNYTLNVTGALTDLSIYFEGPDSGTNFYVDDALVKVY + GKTTFYQNTSFGGTAVSLNPGSYTTAQLTAAGISDNWASSIKIPEGYTVEIYDDDNFT + GTKWSFSADNSNFIEAGCNDKMSSVKIFPTLSQVKYGDINRDGTVDTIDFALLKQFLL + GAQVTIDSVAADLDGDESVTAMDFAVFKKYLLGQITELPAF" + gene 1520816..1522630 + /locus_tag="Ccel_1237" + CDS 1520816..1522630 + /locus_tag="Ccel_1237" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: glycoside hydrolase clan GH-D; cellulosome + protein dockerin type I; Carbohydrate binding family 6; + SMART: cellulose binding type IV; + KEGG: cak:Caul_2129 alpha-galactosidase" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75593.1" + /db_xref="InterPro:IPR000111" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR002241" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MKKVRTVSTIIFLGLMITVIMVLNTGAWDNGLAKTPPMGWNSWN + IFHGDINETKIKQIADTMVSSGMKEAGYVYLNLDDNWMANPARDSNGNLRADPTRFPS + GIRALADYVHAKGLKLGIYGCRGTMTCMNIPQSGSKGYEDKDAKTFASWGIDYLKYDN + CNIPNGSDMKTDYQKMQTALANCGRPIVFSICAWGYQSWMPATGNLWRTTGDIADKWD + NGNEWFKGIINAIDGNAQYTSSAAPGAWNDPDMLEIGNGGCTTEEYRTQMSMWSMMAS + PLIAGNDIRTMSQTTKDILLNKEVIAIDQDPAGVQGKRVKSANGLEIWVKPLGTNGTT + KAVALLNRNSATSNITVNWSDIGVSGSVTVRDLWAKSDKGSFTGSYTASVPSHGTVLI + KISTEPPAPVDATKQIEAESYSNQSGIQTETCSEGGEDVGFIENGDYTVYSNVDFGDG + VGGFQARVASATSGGNIEIRLDSPAGTLIGTCPVAGTGDWQTYTDVKCTVSGATGKHD + VYLVFKGDSGYLFNLNWFTFTPGSVNTGTLGDLNSDGQVDAIDLQLLKKYILGLGAIE + NTKLADLDANGDINAIDFSLLKQFLLGIRTSFPGQGAA" + gene 1522660..1526028 + /locus_tag="Ccel_1238" + CDS 1522660..1526028 + /locus_tag="Ccel_1238" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2197 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75594.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MKRKILSVLLLVTMTTALFSATPMNTASAASTDFVLDGNNIKAG + NINGLTFKGFGVLSGNSSSALLMDYKSEHPEKYTELLQILFGGKNPIMTHVKIEMGND + RNNSTGPDPSTMRWENETANVKRHPGFQLAADAKKVNPNLKVSILRWNAPGWANSNDK + IYTWYKNTILAAYRQYGYMIDYVNPGVNEQTPNLTWTKQYAQRIKTDSTGFNNAEERA + LYNNIKVVISDEVSVGSFGDDMVSDSTLRDAVSVAAYHYNTDDNSLGSFKQLAESFDK + EVWNSEAQATFSNSSFRPNNNMKDPTVAGTGIGGTNGPLEMGNTVIKGFVNSRRTHFI + YQPVIGSFYEGGQYSFKELVSARDPWSGWIHYDAGLVILRHFSWFSKAGWENESNTAG + VWRAVPQASFTGATGTNPVNGRNGTPSYMTLASPDKHDFSTIFINDSEYSKTYTFKTI + NMAYSGNPSLEVWETRAADKGASFNSNYMKYTGTVSTNSSGVYTVNVKPYSIVTVTTL + SNSGKAEFNTPLPVEGDRPVLDTDKTGSMQDTRDNILYADNFDYSSKTAPVIAEGGQI + TGTQSYIDSRGGSKSAIPRYASDRNGAFEVYLPDGSSNYILRQQVNQSSMGLGGTWNN + GNPITGIGDNRWMNYKASVDVSFEHNSTEGGNNYAAIGARQQGGENSHYLNGTPYILK + FWFDGGWSLLVNGSSVANGNVASGSGGVKISGFNTAYNAWHNISIMVADNKVTAYLDN + TILYTYTDTTQRLSGRIDLASGYYNTCFDNLKVETIDGYAPYYSEMLDNLEMYDLSSV + SATKLVYGGSWAHENGKSMYNYQRSLSTSQGIGATIQYSFTGTGLDILGANNGSAKLE + VTVDGRVVNSSVGTMVSGNLHQNFTLHGLEYGKHTVCLKVLSGTMVVDAVGVVANIAG + ASEIPVEQSAYSRIEAESYSNQSGIQTETCSEGGEDVGFVENGDYTVYNNVDFGDGVG + GFQARVASATSGGNIEIRLDSSTGTLIGTCPVAGTGDWQTYTDAKCTVSGVTGKHDVY + LVFKGDSGYLFNLNWFTFSEKTVIGNLGDINSDGQVDAIDLQVLKKYLLQLGEIGDTK + LADLDANGEINAIDFSLLKQFLLGTIISFPGEAL" + gene 1526092..1529139 + /locus_tag="Ccel_1239" + CDS 1526092..1529139 + /locus_tag="Ccel_1239" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; glycoside hydrolase family + 2 immunoglobulin domain protein beta-sandwich; glycoside + hydrolase family 2 TIM barrel; glycoside hydrolase family + 2 sugar binding; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2197 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75595.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006101" + /db_xref="InterPro:IPR006102" + /db_xref="InterPro:IPR006103" + /db_xref="InterPro:IPR006104" + /db_xref="InterPro:IPR006584" + /translation="MLRKKILCIFLVTVLMLTILPIPQQTVMADTGVLKELKGTDIYN + GLRGLNFNEGWKFNKGDVSNGQSTGYNDSGWSGVTLPHDWSIYNTFNKSSAAGAGGGY + LDGGIGWYRKTFTVPSDYTGKKVFIEFDGAYMNSQVWINGTLLGTRPYGYSSFEYDLT + PYLNIGGSNVIAVRLNNNQPTSRWYSGSGIYRNVWLTVLDPVHVTYCGMFVTTPTVSS + SSATANVSTKVLNQGSTAKSVSLKTTITDAEGNVVATNTSSVASIAGSGSNTFSQNLT + VSNPHLWSPASPYLYAVQTQVIVDGNVTDTYSSTLGIRYFSFSSTSGFSLNGVNMKIN + GVCLHHDLGSLGAAVNYRAIERELQIMKDMGCNAIRTSHNPPDPQMLEICDRLGLMVM + DEAFDCWETGKNSNDYHLYFNNWAQTDLQAMVTRDRNHPSIIMYSIGNEIPSPSVATA + TKLKNWVKDVDNTRPVTLGTFAVSMGDATPQAVASVLDLVGYNYFPYMYDGGHNNHPE + WKMFGSETSSAVRSRGVYKTPTNKNILTDSDNQCSSYDNSVVSWGNSAESSYNEINKR + NYMAGEFIWTGFDYIGEPTPYEWPAKSSYFGIVDTCGFPKDIYYFYQSKWSTKPMVHI + LPHWNWSTGTNVEVWAYSNCDTVELFLNGKSLGSKSVGTAGHLSWSVPWSSGTLRAKG + TKGGTVVYDEVVTAGTPSKVLLKPDRTSVKADGKDLIYIETDIADGNNVTVPTADNTV + NFSISGPGVIVGVDNGNPISTEAYKGSSRKAFNGKCLVIVQPTKVNGTIVVTASSNGL + SSGSVSIASTGGAEAPIVSAYKKIEAENYDNQSGIQTEACSEGGQDVGFIENGDYTVY + NNVDFGSGAESFTARAASATSGGNIEIRLDSPNGTLIGTCPVAGTGDWQTYADVNCSV + SEVSGKHDLYLKFTGDSGYLFNINWFTFTARNSAKLGDLNSDDQIDAMDFQLMKKYLL + GLGEIKDTKLADLDASGTIDVLDLMLLKQYLLGTITSFPGQGT" + gene 1529200..1531542 + /locus_tag="Ccel_1240" + CDS 1529200..1531542 + /locus_tag="Ccel_1240" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; protein of unknown function + DUF303 acetylesterase putative; glycoside hydrolase family + 62; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75596.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR005181" + /db_xref="InterPro:IPR005193" + /db_xref="InterPro:IPR006584" + /translation="MKHLYKKGFSIIFCLFLILASVSAVNAAANPNPSWNVDERVIFH + NQCSPYDYYAAKDPTIVYYNGKYLVYYTGANKSGGWQMCFTSASTISGLKTAPRTYMS + KIGESYFCAPELFYYEPQKLWYLVYQDGTHGAAYATTTTPDDPNSWSGPKSFGISGNM + GWDYYIICDDQYAYMYNTPSDGSGKLYMRKTTLANFPNKGWSTPTVACSNVFEGAAVY + KSLADGQYYMLIEAMIDGRSYELFTSSSAGGPWTLVNNKWATRSNLTKYNADKWTTNV + SHGELIRAGYNQKLEINDINKVDFLIQGTTNMNAEYQQIIWDLGLIRNYEGSPDTPVT + PRTAFEKIEAESWNDQSGIQNVTCDEGTEAVGYTENGDYSVYKSIDFGSGATSFQARV + SSATSGGKIEIRLDSATGTLVGTCTVSGTGSWQTFADVNCTVSGVSGKHDLYLKYIGD + SGYLINLNWFKFGTGSTDPVDPTLKLGDVNSDGQVDAIDLQLVKKYLLGSGTIENTKA + ADVDANGEVNAIDFSLIKQYLLGIIIEFPGEGTTEPTTPKFHCFLLLGQSNMAGYAAA + QASDKVEDPRVLVLGYDNNAALGRVTDKWDVACPPLHASWLDAVGPGDWFGKTMIQKV + PSGDTIGLIPCAISGEKIETFMKSGGTKYNWIINRAKLAQEKGGVIDGIIFHQGESNS + GDPSWPGKVKTLVEDLRKDLNLGNVPFIAGELLYSGPCAGHNTLVNQLPSLITNSYVV + SADGLVVDPADTQYRLHFGHDPSVTLGKRYAEKMIQALKW" + gene 1531759..1535253 + /locus_tag="Ccel_1241" + CDS 1531759..1535253 + /locus_tag="Ccel_1241" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: coagulation factor 5/8 type domain protein; + cellulosome protein dockerin type I; Carbohydrate binding + family 6; + SMART: cellulose binding type IV; + KEGG: fjo:Fjoh_4083 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75597.1" + /db_xref="InterPro:IPR000421" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MNINKKIIRKIGATVLAGVLIVSGNLPFNGYKSLAASQDTVEAG + GIATQDNDLKLFYNSMAGNNFSGNPYDLNESFYKALPLGNGRIGAMVYGNYPDERIDL + NEATFWSSGPGNNNRAGAANFLKTAQDQLFAGQYKTGSATIANNMIGGGEAKYQSIGD + LKLSFGHSSVSNYSRQLDMNTGVVSSDYTYNGKKYHRESFVSYPDQVMVTKITCSSPG + SISLTAGYESSLTGQYTVSTSGNDTLVMNGHGDSDNGISYAVWFSTRSKIINSNGSVS + ANNNQISVSNADSVVILTSIRTNFVNYKTCNGDEKGKATTDIANASAKSYDTLYNNHV + TDYQNLFKRVDVDLGGSGSENGKPMGQRISEFGTTNDPKLAKVLFQYGRYLMISASRD + SQPMNLQGIWNKFRNPAWGCKMTTNINYEMNYWPAFTTNLAECFEPFVKKAKELQAPG + NETARVHYNISNGWVLHHNTDLWNRTAPIDGDWGFWPTGAGWVSNMLFDAYSFNQDTV + YLNEIYPVIKGAADFLQTLMQSKSINGQNYQVICPSTSPELTPPGTSGGQGAYNSYGV + TMDNGISRELFKDVIQASKILNIDSSFRSTLASKVSQIKPNTVGSWGQLQEWAYDWDS + QSEKNRHISFAYDLFPGLEINKRNTPAIASAVSKSLNTRGDVGTGWSEAWKLNCWARL + EDGAHSYNLVKLLITPVSKDGRLYDNLWDAHPPFQIDGNFGFTSGIAEMLLQSHNNEI + QLLPALPSQWSTGHANGLCARGNFTVTKMNWANGVLTDATIKSNSGNVCNVRYGNKTI + SFPTKKGYTYQLNGSLQLVEPGTTLTNVALNKTATASGTNLGEEAGKAIDGSTTSKWC + HDNGMRGEWLQVDLGAKYDISRWVVKHAGVAETIRFNTRDFTLQKSDDGTNWADVDEV + YGNQQNITDRNVPTFNARYVRLYINTATQDNSGGARISELELWGKPSVDIPKSAFSQI + EAEEFNSQYGVQAETCSEGGQDVAFIENEDFAAYSNVDFGEGAKSFQARVSSATSGGN + IEIRLDSIDGPLVGTCPVTGTGDWQNWSDVTCNVSGASGKHDLYLKFTGDSGYLFNLN + WFKFSNAPIVTGKPGDINNDGQIDAIDLLLLKKYLLGLETIENTKLADLDANGEINAI + DFSLLKQYLLGNISVFPG" + gene 1535348..1537237 + /locus_tag="Ccel_1242" + CDS 1535348..1537237 + /locus_tag="Ccel_1242" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; + SMART: cellulose binding type IV; + KEGG: cth:Cthe_3012 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL75598.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /translation="MITSFKKMFSVFVVCLIVFSLVFTVPVTEVSAASDVTVNLSAEK + QEMRGFGGMVHTGWQSDLTAAQRETAFGNGNGQLGFTILRIHVDENSNNWSRGIATAK + SAIAHGGIVFASPWNPPTSMQEKFTRNGTANQTRLKYDQYAAYAQHLNNFVKYMKDNG + APLYAISVQNEPDYAHTWTWWTPQEMLNFMKNNAGSITGAKVIAPESFQYLKNISDPI + LNDSTALANMDILGAHFYGTSVSNMPYPLFQQKGAGKELWMTEVYVPNSDADSADRFP + EALDVAYNMHNGIVEGNFQAYVWWYIRRSYGPMKEDGTMSKRGAMMAQYSKFVRPGYV + RVDATKNPNTNVYISAYKGDGKAVIVAINKGTSAVSQKFNLQGASSVAKVSSWVTDGS + RNVAAATSYTGTSFTAQLPAQSVTTFVADLGTITPVEKDAFSKLEGESYDDQSGTQNG + SCNEGGECLGYIENGDYAVYKNVNFGEGAQSFQARVSSATTGGNIEIRLDSPNGTLVG + TCPVAGTGDWQNWADVTSNVSGVSGKHDLYLTFTGDSGYLFNINWFKFDKAPIVTGKT + GDINNDGQIDALDLLLLKKYILGLDTIENAKLADLDANGELNAIDFALLKQYLLGLIT + VLPTV" + gene 1537355..1538245 + /locus_tag="Ccel_1243" + CDS 1537355..1538245 + /locus_tag="Ccel_1243" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75599.1" + /translation="MKKYVIPAVLAIVVLIVILTASCSDRRKSFELLSGDVIPTSAKL + FRVSGESYKISDVKSKYKVIFYLNSNNEESIKRLDCISKTISLLSCKDISYLLVWEDR + IPVEDIQKAGIDESYNYSLKQKVSLSESKPTAFLMNENNKIIMVTGYSYISLINELIN + LNGKTDLSKKAGKMIVNNVSKSGDFSGNHDGKILLMFMSSGCKICRVSEDIVSKNIDA + MGKKINTITVRPDFDTRHPYDKNFEIDPQQIYFNVFSHEQGIQASNRKYPMFLIINSD + YSVEKLFTDASEVVNYILGL" + gene 1538259..1538789 + /locus_tag="Ccel_1244" + CDS 1538259..1538789 + /locus_tag="Ccel_1244" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mhu:Mhun_0855 cytochrome c biogenesis + protein, transmembrane region" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75600.1" + /translation="MRKFPLYLLVLFLVVQWCSLRVWAESDNKVTSVYFYSPTCASCR + SMSDFLDKFSASHKNLDLRKYDISDLRYKSLLDKYSEAYNVSPEDKGIVPVVFIRDKY + FTDEEFIRANFEKVLNTPGAETLEINNDLAQTPEKDIRRFKGLEIVLLVLVVLLLIKL + NWKRQGTNCRREYSDK" + gene 1538857..1540515 + /locus_tag="Ccel_1245" + CDS 1538857..1540515 + /locus_tag="Ccel_1245" + /inference="protein motif:TFAM:TIGR02474" + /note="TIGRFAM: pectate lyase; + PFAM: cellulosome protein dockerin type I; Pectic acid + lyase; + KEGG: sus:Acid_1098 pectate lyase" + /codon_start=1 + /transl_table=11 + /product="pectate lyase" + /protein_id="ACL75601.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR012669" + /translation="MITKTRSQIPKVLLITMLVSVFSLILLFPKHAFASTPDWKSVLK + NSDSWFGSSEGIALADSIVKYQLADGGWRKDMTTSTSGSWGKSTIDNDTTTSQIKVLA + KTYNQTKNTKYLTSCQKGIDLLLNGQYSNGGWPQVFNDAGTYHAHITYNDNAMIHVMN + LLTDVSKKSGDYTFIDSTRASKAGGAVQKGIQCILNTQIIVNGIKTAWCQQHDELTLK + PTSGRAYELPSICTSESVGIVNYLKGISNPSTEITNAINSAVNWFAQVKILGIKVVDT + GDDRIVVSDSQAPPIWARFYEMGTNRAMFVDRDGSIHYQMSEISQERRDGYDWYGDWP + KNLVKDTVIPTPIPDGQYIKSLIVSDTDNAADWSIQTNLQVGDTIYGDRTFKVVQIPQ + SLAGAEWIRTACDSKLYTSDEASFTAKSDITVYAALDTRVTSIPAWFGSWTKTDETLS + TDNAVTYNIYKKDFTTGSSVVLGTNGASSSVVNYTVMVKPKSIILKGDVNGDGAVDAL + DFALVKRYLLNGVTDGMNLQAADMNNDNSVNAIDLALIRGDILY" + gene 1540543..1542225 + /locus_tag="Ccel_1246" + CDS 1540543..1542225 + /locus_tag="Ccel_1246" + /inference="protein motif:PFAM:PF01095" + /note="PFAM: Pectinesterase; cellulosome protein dockerin + type I; + KEGG: cth:Cthe_2949 pectinesterase" + /codon_start=1 + /transl_table=11 + /product="Pectinesterase" + /protein_id="ACL75602.1" + /db_xref="InterPro:IPR000070" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKRERFFQLALIFVFVFQTIVGSFLMSKVGAVSYDLIVAKDGSG + NYTTVQAAINSAPSNSQTRTKIYIKNGTYKEKINISSSKINISLIGQSKAGTILTYND + AASTKTSSGGTLGTTGSASVTIAGNGFQAENITFENSYDEKAYGNSQAVAVLAKADKM + IFKGCSFKGNQDTLYANGDARRQYYYNCYIEGDVDFIFGSANAVFDSCEIFSLNRSGG + CITAPSTKANQKGYLIYKCKLTSSSSPKTIYLGRPWIPSSDTVQTTPKVLYRECELGS + HITDTGWTVMSGNDPANFEMWEYNNTGTGANTYRKQLPSVKAADYTIEKFLSGSDGWN + PNIDSNTPVPIPDGQYIKSLVINDTVNAVNWSVQSNLQVGDIIYGDRTYKFTQVPQKL + LGSEWIKTACNSKIYTSDLASFTAKSDVTVYIGLDTRVTSIPGWLSSWTDTGESLVSD + NSSVAYNIYKKDFMAYSLVTLGTNGASSSTVNYAVIVKSNTYDFLLGDANGDGEVNSL + DYATLKSYLLGKISLSQEAMKTVDFNNDNTIDAIDLALFRINLLGGPIYNML" + gene 1542461..1544296 + /locus_tag="Ccel_1247" + CDS 1542461..1544296 + /locus_tag="Ccel_1247" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75603.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MEKKPKDVSNLASIKNNFFALKIAWSLTKSNVIHVLLLNILGYF + EWVFFSTIFMRYIINALEKKMSFESIMVFILISGGAFALIGLYRSYVNNVTFTLNSTK + IYEGLYLKLYKKARNVELSCFEDAEFYNKYTMAIDDAADKIAIVVNNVWGILVGIIAT + GVVFFSMYDIDKVAVLFVIFPIIGNFVFGGFMNKLELKRYKEGIPNERVFQYVNRVMY + LAEYAKEMRLSKVYQLIKEKYNEALKRIVSIAGKYAPKLIVMEVLKVVFTFSIIFEGV + LLYGAYRAMVVKSISLSEMAVLSSTMVSATWILIGLFNNIVEAMKNGLFVNNLRTFIE + YKEVIPEDWDGDMPEPIISSIEFRNVSFSYKDGKYALKNLNFCITENSVAAVVGHNGA + GKSTIIKLLFRLYDPTCGEILINGRNIKEYNLRAYRQLFAAAFQDYKILALSVKDNVL + MGHKVENEDEAVIEALKKAGVYEKVETLPKGINTILTKEFDEDGAVLSGGQYQKIVVA + RAFVQNTPIKVFDEPSSALDPIAEYELYKSIMKESKNKTMIFISHRLSSVRNADRVFM + FERGELIEQGTHEELMELNGSYADMYTKQAMNYLAVDKIEEGVAL" + gene 1544293..1546107 + /locus_tag="Ccel_1248" + CDS 1544293..1546107 + /locus_tag="Ccel_1248" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cau:Caur_2439 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75604.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSDKDMKQPFKQVWNNNMFILKICFSASPLYVLAFIFDILRNQI + LIFLEHTYGIGYVLESVEFGRPFHKVAVFIITLFILISLGMIYGAFVNQLISKKGLPK + MKQKLKFMLYEKAQELDLECYDNPEYYNEFVLAVSEADKQVDRLMEFLNKIFTGLTVL + ITTGTYFLVKDWFSIIFVLISFILSFMLMQVFNKINFKIRLKKNPEERKRAYVNRVFY + LNDYAKELRLNPDVSDKLFDKFKEANKAIYNIDKASAKKKFLISFVRDYISNDFISDV + LYITYLVYKATVLNAISYSSVVILFNSFSRLKQSLRTITEIYPYASETSLYIDKIRNF + LNYEPKIVSRKKLAVPETPKTFELNNISFAYKEGEKRVINNINITIKPYEKIALVGYN + GAGKTTLIKLLMRLYDLQEGMISLNDINIKDYDVVQYHDYVGTVFQDYMLYAATVKEN + VIMDNADGVAEKPVMTALEQSGFAQRLQSFKHGLDTPLTAEFEEDGVNLSGGEAQKIA + ISRAFYKDSSLIILDEPSSALDPIAEYQLNQSMLEAAANKTVVFISHRLSTTRLADKI + FMLENGRIIEEGSHEELLQLNGKYAEMWRVQAGQYIEV" + gene 1546692..1548752 + /locus_tag="Ccel_1249" + CDS 1546692..1548752 + /locus_tag="Ccel_1249" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_2761 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75605.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKVSVLVVLAVLLVSIIPSAVSAEENNFNYVDAFAKSILFYEA + NWCGPDAGNNRIKWRGPCHCDDGKDVGLDLTGGFHDCGDHVKFGLPQCASASTLAWAY + YEFEDVFIDKGQDGYMLNILKHFCDYFMKCFPNKTTFYYQVGDGDVDHQYWGPPELQT + YDRPAYYVATPSNPGSDVAGDAAAALALMYLNYKDIDSTYAEKCLTYAKDLYDFGMTY + RGNSKGQSYYLPRTYLDELMWGSIWLYVATNDNKYMDNVEKLMVEKGITGGNSFNDNW + TQCWDYVLTGVFTKLATLSTNPLYKSIADDHIDYWQNRLKTTPAGLKYLDSWGVCKYP + AAESMVQLVYYKYFGNEKCLDFAKGQIDYILGDNPNNMSYVVGFGDNYPKYPHHRAAS + GVLEGPPADEKKELPERHILYGALVGGADMNDEYHDNVNEYVYSETGLDYNAGLVGAM + AGMSKYFGKDQLPEPTPGIEGEPTQYYSEAKLYKSNTEGVTVDLNLYNIVTAPPQYEK + DLSCKFFVDLSEFAAEGINPSKFTTKVYYSPADAQISGIQPYDKEKNIYYVEITFPNS + QLYARTYVQFCIYNYESKLWDSKNDLSTAGLTDEYAKIENIPIYKNGVKVYGNDPAGS + TTILYGDLNNDKEINAIDFALLKKYLLNGDAEGIILNNADINKDGAVNALDFANLKLY + LLGK" + gene 1548963..1550687 + /locus_tag="Ccel_1250" + CDS 1548963..1550687 + /locus_tag="Ccel_1250" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: histidine kinase HAMP region domain protein; + histidine kinase internal region; + KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase, LytS" + /protein_id="ACL75606.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MVKLKMRNSIFSRLVITFMIIIIPLYSLGIYIYGSSLRTVKSEI + SKSTVAQASFYLESLEKEIERIKILQYDCLNDEQLNKLAIRWEIMSEYEISQTLLQLK + QRLVAIKSSSIYVNDVNVHILPISKTVSSNSGVDDIHINEYNGIYVPAGLKGAQIINY + NGQLYLSTFKKYSGATKPLFTINIELNQNALKQALEQFNTYAGSGSILITPTNIIANK + SQEDNSQLIQSILLSMKERDRDGTVFTKIGNKQYYVVHSNSSYLNMLLLRYFPQEFIL + KPLENFKTWAWVFSIAAILIIIIYSFSTYKFMHQPLNELVKSFRKIENGDLKVFISHD + SNNEFGYLYKCFNDMVKNLNMLIDQVYNQKILMQKAELKHLQSQINPHFLYNSFFMIN + TMARIGDENLVPFTKHLGEYFRFVTRNSMDNLSLEEEINHAKVYTEIQLMRFSKRIQI + HFGECPNMYKDLKVPRLILQPIIENAFEHGLEKKKNGGLLLVNFEGNERELRIVVEDN + GFDITDSELEKLQNSLEDNGLEIETTGTLNIHRRIRLVFGEESGLIISRSVIGGLKAV + LKIVLQKE" + gene 1550692..1552392 + /locus_tag="Ccel_1251" + CDS 1550692..1552392 + /locus_tag="Ccel_1251" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75607.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYRLLIVDDEEIIVNGLYEIFRSLKNLDLDVYRAYSGEEAVEWL + SRTRMDIVLTDIRMPEMDGLQLLDVIYRRWPQCKVIFLTGYNEFEYVYKAIQHQGVSY + ILKTEDNDKVISVVENAIEEIKKEIKTEDLIHNAKEQIELALGLFQKDYFIHLLHEEN + SSDVNKAQFEQLAIPMYPDHPVILLLGHIDSIPGNLSYWDKIQYINSIKVIITKNLNT + NIRSICILDDRYRFIFFIQPNELMTTGFSKTEENAFYDKAISFVKGTLEVIQTACMES + LNASISFSLSGEPCNWEDVSKKYFSLNQLLNYKIGTGTEMLLIDNELKNNILASGTEV + PELDTNDEPLEILLRRKNMDLIQQYMESGQKEKYFEVLEELLTPIKSVKSKNSNLAIE + AYSMVSLSILSYINRWKITEKLAFHIGLNSLMRIDKHETWSDAVKYLINISDIIFQLQ + TDEQKKRADNAVDFVQSFINEHLSEDLSLVRLAEQVYLNPSYLSRLYKQVTNTNLSDF + IDNARIERAKELLKKEKVKINEVAKAVGYETAASFTRFFKKLMGCSPQEYHDTMLSGK + " + gene 1552551..1554266 + /locus_tag="Ccel_1252" + CDS 1552551..1554266 + /locus_tag="Ccel_1252" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: gtn:GTNG_1773 peripheral protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL75608.1" + /db_xref="InterPro:IPR006059" + /translation="MRFNYLKKAVSLAVVLSLTASIVVACGSQNNTSDSTASSSQSTT + SSVANKDPFGKYSPEIDISFVRGIDDDLAANILPKTPGETLEDNRWTKLYKDELGINV + KYAWTVKGNETSDAYTQKINVTLASGELPDVVLVNPSQLKQLVDSDMIEDMTQYYNDY + ASEDFKKLMTEEGTGNIDSAMFDGKMMAIPEPVSTNETAHYLWIRNDWLKKLNLQAPK + TMDDVLKISEAFTTQDPDGNGKNDTFGLPITKDIYSGCMGTEGFFAGYHAYPNMWIED + DSGKIVWGSTLPETKVALQKLADMYKSGQLDKEFGVKDGGKVAETIAAGKVGINYGQQ + WNPMYPLISNFNNDKNADWTAYPIVSNDDKKVMVPLKFNQTRIFAVKKGYEHPEALVK + LFNAHVEKNWGKTADFNKYYMPVENGGVGVWKFSPVCPAPVFKNLEAFVAIDEARNNN + DFSKLTGEPKIIQGNIEAYAKGDTSQWGWEKIYGKEGAFRNMVEYKKNDQLLKEKFVG + APTTTMAEKKTTLEKMEKEVFIKIIMGAAPISEFDKFVSDWNKLGGADMTKEVNEWYD + SVKSK" + gene 1554372..1555274 + /locus_tag="Ccel_1253" + CDS 1554372..1555274 + /locus_tag="Ccel_1253" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bcl:ABC0727 polysaccharide ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75609.1" + /db_xref="InterPro:IPR000515" + /translation="MKNLNIKKQLPLHLMILPGFITLLIFSYLPMAGIVIAFQKFIPA + KGLFGDQKWIGFKNFEYVLNMPNFDNIMWNTISIAMAKIILGLIIPIIFAILINEVTN + NALKRGIQTLIYLPHFLSWVVLGGILIDILSPSGGILNSFIKSLGFEPIFFLGDNKWF + PSTMVLTETWKEFGYGTIIYLAAITGIDPSLYEAARIDGANRWKQTLHITLPGMRMVI + VLLMVLSLGNILNAGFDQIFNLYSPPVYESGDIIDTFVYRIGLLEAQYGVATAVGLFK + SVVSFTLISVSYFFAYKFADYRIF" + gene 1555289..1556173 + /locus_tag="Ccel_1254" + CDS 1555289..1556173 + /locus_tag="Ccel_1254" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bha:BH1066 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL75610.1" + /db_xref="InterPro:IPR000515" + /translation="MKHRKLKKVSVFTIVNNSFLIFAALLCIIPLVHILAVSFSSSSA + AAAGKVVFWPVEFTLNSYNYVAKRVAFWHSMLVSVERIALGGFINLVLTILCAYPLSK + EKTEFRFRTFYAWAFFITMLFNGGLIPWYIVIKQMGLLDSIWALVLPGAVPVFSVILL + LNFFREIPKELSEAAYIDGAGHWTTLWRIMVPVSTPALATITLFSLVGHWNSWFDGLI + LMNKAENYPLQSYIQTIVVQRSYSMLSRQEISELATISDRTLRASQIFLGTLPIVMVY + PFLQKYFVKGIVLGGVKG" + gene 1556319..1557797 + /locus_tag="Ccel_1255" + CDS 1556319..1557797 + /locus_tag="Ccel_1255" + /inference="protein motif:PFAM:PF06964" + /note="PFAM: alpha-L-arabinofuranosidase domain protein; + KEGG: bcl:ABC3371 alpha-L-arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="alpha-L-arabinofuranosidase domain protein" + /protein_id="ACL75611.1" + /db_xref="InterPro:IPR010720" + /translation="MVKMILNADIKKGKINKNIYGHFSEHLGRCIYEGLWVGEDSEIP + NINGFRTDVVEALKKMKIPVLRWPGGCFADEYHWVDGIGPKENRPCMVNTHWGGVVEN + NHFGTHEFLELCEMLGAEPYICGNVGSGTVHEMQQWVEYMTFDGKSPMADLRRANGKE + EPWRVKYFGVGNENWGCGGNMTAEFYADQYKRYATYVRNFGDNKIYKIAGGASVDDYH + WTEVLMREAGKQMDGLSVHYYTRISKDWSEQGSATEFDENHWFSVMQNALFTEELVVR + HSNIMDKYDPEKKVGMIVDEWGTWFAVEPGTNPGFLYQQNTMRDALVAGIHLNIFNNH + CDRVQMANIAQMVNVLQAVILTEGKKMLLTPTYHVFDMYKVHQGAELLSLDFESPEYA + YNGEKVPQLSASSSVDSEGKIHVTICNLNPSADVNIDIDLRGVKSKSSTGKIITSNAM + NAKNTFEETTNVTIKNFEDINLENNHISGKIPSKSVVLLEIV" + gene 1557906..1558160 + /locus_tag="Ccel_1256" + CDS 1557906..1558160 + /locus_tag="Ccel_1256" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bcl:ABC3370 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75612.1" + /translation="MKDNCLKCHRNIHITHNDIEMEVKRVVKSGVPLARNEQYEKRLE + VCNSCKHLADGITCMICGCIVKARAMNALRICPHPSGNKW" + gene 1558208..1559710 + /locus_tag="Ccel_1257" + CDS 1558208..1559710 + /locus_tag="Ccel_1257" + /inference="protein motif:PFAM:PF04616" + /note="PFAM: glycoside hydrolase family 43; + KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 43" + /protein_id="ACL75613.1" + /db_xref="InterPro:IPR006710" + /translation="MKIQNPIIWADMPDPDIIRVGDIYYMVSTTMFVMPGAPILKSKD + LYHWELVSYVFNTIEDNDIYQLKNGKTAYGKGQWATSLRFFNGLYYACFVCHDMQKTY + IYYTDDIEKSGWERYVINNVFHDMSFLFDNNRSYLIYGNGDIKIVELKDDLSGIKDGG + VNQLLFSTPSENIMLRCEGCRAYKINGYYYLLFIEWPNDGNSRRRVVCYRSKDLLGEY + DRKILLDDDMEYQNQGIAQGAIIDTPEGEWYSILFQDHGAVGRIPYLLPVSWEDDWPN + LGVNEKVPESFEIPFEAYDTKPLIVSDSFNHNENKLDLRWQWNHNPEEDCWSFTEHPG + YLRLRTQSLATDILTARNTLTQRTSGPQCAFSVELKTEGMKAGDYAGLVALQGNYGAI + GIRADENNLKRIIVSKKGSDGRQIEEEYRLFADSRILIKIEFDFRNSSDIAKFYYSQD + GIGWIKLGSDLHMTYTLDLFIGYRIGIFYYSQKAAGGFADFRNFSYESRQ" + gene 1559728..1560858 + /locus_tag="Ccel_1258" + CDS 1559728..1560858 + /locus_tag="Ccel_1258" + /inference="protein motif:PFAM:PF01270" + /note="PFAM: glycoside hydrolase family 8; + KEGG: bha:BH2105 xylanase Y" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 8" + /protein_id="ACL75614.1" + /db_xref="InterPro:IPR002037" + /translation="MSKGAYFTKQYPNLFAELGISDEQINKKVNDTFNTMFFDPEEKI + YFEIGKDMGYMMDTGNNDARTEGMSYGMMMTLQMDRKDIFDRLWLFSKTYMYQNEGKY + QGYFAWSVSTDGKKNAEGPAPDGEEYFAMALFFAGKRWGDGKPPFDYSIQARDILKHC + IHQSEIVEGGEPMWDSTNHYIKFVPETPFSDPSYHLPHFYELFALLANEEDKDFWKKA + AEASRNYLHISCDRDTGMASEYAEFDGTPKKLFRDFQFYSDSYRVAMNIGLDAAWFSK + DESLGDIVDKLQSFFSENTVLGEYKAYTVKGEPFDAPAMHPVAIIATNAAGSLAAKGK + YRDQWVKDFWELPLRKGVHRYYDNCLYFFSLLMLAGKYKIYI" + gene 1560925..1562430 + /locus_tag="Ccel_1259" + CDS 1560925..1562430 + /locus_tag="Ccel_1259" + /inference="protein motif:PFAM:PF01229" + /note="PFAM: glycoside hydrolase family 39; + KEGG: csc:Csac_2409 xylan 1,4-beta-xylosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 39" + /protein_id="ACL75615.1" + /db_xref="InterPro:IPR000514" + /translation="MNKIKISDKVTGSFRDNWNFCVGTERMGIALQKEYQDTLEFVQK + AINFKYIRGHGLFHDDTAIYREYEIDGEMKPFYNFTYIDRIFDSFLEKGLKPFVELGF + MPSQLASGGQTVFYWKGNVTPPKDYDKWKNLIQALIKHFISRYGIEEVLQWPFEVWNE + PNLKVFWKDADESEYFKLYKVSATAIKEINKDLQVGGPAICGGADYWIKDFLEFCKRE + NVPVDFVSRHLYSAHMPKLQTHEFCYQDLKEPEEMLKELQTVRQMIDNSPFPHLPFHI + TEYNTSYNPLNPVHDTCLNAAYLARIISEAGDIVDSFSYWTFSDVFEEADVPRAQFHG + GFGLVALNNIPKPTFHMFSFFEQMGKDILYRDENMLATRKADGTVTITAWNPVMEKGD + HFNMDFSLELNLPKGEYFINRTIVNETHGNPWRTWIQMGRPRFPGKKQVEILRNAARP + MVISERVSCTDEILLLEFTQSKNEVSFIEIIPVADETNTYYKLDDSLIPGY" + gene 1562478..1563275 + /locus_tag="Ccel_1260" + CDS 1562478..1563275 + /locus_tag="Ccel_1260" + /inference="protein motif:PFAM:PF00756" + /note="PFAM: putative esterase; + phospholipase/Carboxylesterase; + KEGG: csc:Csac_2407 putative esterase" + /codon_start=1 + /transl_table=11 + /product="putative esterase" + /protein_id="ACL75616.1" + /db_xref="InterPro:IPR000801" + /db_xref="InterPro:IPR003140" + /translation="MAIFQANFFAKTMKRSICFNALIPNDKYQAPDQEIKDEPKGPMK + SIYLLHGYSGNHTDWLTWTKIQELSLKYNIAVFMPSGENFFYVDDEEVGAYYGELIGN + ELVDYTRSTFHLSDKREDTFIGGLSMGGYGAIRNGLKYSERFGRIIALSSALITNQIA + GITPDFKGPVADYPYYRRVFGDLDRLLGGDKDPEALIRSLKEKNADIPKIYMACGTED + FLINENRELHEFLVSEKVEHTYIEDSGVHDWKFWNEYIDKGLAWATE" + gene 1563328..1565526 + /locus_tag="Ccel_1261" + CDS 1563328..1565526 + /locus_tag="Ccel_1261" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ote:Oter_3211 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75617.1" + /translation="MKLICGDYTLIFKDGGLEVQKTGRTIYFNKRPMFVTIKTAMAIN + EFYNKAYSEVNIFGNSIIAKGILTAPSGSEFSFSDVYEAGDSGFKVSRNVKVLKAGDD + LGFSTKISFTMAESNDTHDYNCFAPGVWYRQNQFAPDFAFGKDLDCEYFWQMETRYAL + PLFAMQNIASGETAAISRWASDVTMRSLDIMQSENNLDAKFTIGSIGMSRPQNKTMNY + MYYGFEVRKEIETRTDGLSIDYVYPGCDGQMPGVNHYGGLDYNGRVKTFQRINHPVEP + GFEQNYSVAVNFGNYDSYQLMMRDIWRVTYDRLRDKLFDVDNELFFHNCMNILDRYTR + QYGDSYGLPFACQLPHMDINCVSFQFGFVGQQPGIGYQLLRYGDKENIPETFEKGVNI + IDFWVRTAMTESGLPNMCYNPGISTFEPYPHYIRMLADGIEAILDAYIYMKKKGDERP + KWREFCQKTADWLISNQNEDGSFYRAYNTDGSVRMKSKSNTPSVIRFLVQFYLVTGDE + RYKNAAIKAGDWSYENAYLNMEYRGGTCDNTDIQDKEAGIYAMFGFLALYDLTEEKKW + LEGAVGAADYTETWTYAWKFPVRAPMEKHPFNRYSISGQSIITIGGAADVYMAACSYT + YYRLYVITGDEHYLDFAEFIHKNTRQSSDIDGSIGYIMPGLGHESGDFTRQTLQSQYH + WLPWCTFVEVDPSSRLYDTFGGYEIADAQKLSSEERIRKNRIYANYVDSL" + gene 1565553..1567460 + /locus_tag="Ccel_1262" + CDS 1565553..1567460 + /locus_tag="Ccel_1262" + /inference="protein motif:PFAM:PF03629" + /note="PFAM: protein of unknown function DUF303 + acetylesterase putative; glycoside hydrolase family 2 + sugar binding; + KEGG: csc:Csac_0206 protein of unknown function DUF303, + acetylesterase putative" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF303 + acetylesterase putative" + /protein_id="ACL75618.1" + /db_xref="InterPro:IPR005181" + /db_xref="InterPro:IPR006104" + /translation="MGIILNSNRPKIRLPRIISDGMVLQRNTDVKIWGWASPGEAVTV + RFIGKAYHAFADDSGEWFVRLEQAKAGGPYDMYIETEESLEKITIKNILMGDVWLCSG + QSNMEMKMDSVKDTYPDEIVHSCNDYIRHFLVPVKYDFEKPQTDLEAGIWEAANPESI + LDFTATGYFFALKLFEKYNIPIGLINASLGGSPAEAWLSENALREFPEHYESAKQLSN + RDYLDKVLREDQESAEAWYTALNQNDEGLKSNDIPFHDTEYDAPFWQNIKVPSYWEDE + GVGNFNGVVWFRKEIDIPSTLADKPARLVLGNIVDEDTAYINGIEVGTTPNQYITRKY + SIQEGLLKEGKNTIVLRVVNTAGKGGFYKDKPYQLEIGDNIIELSGEWQYMIGAKSSP + MPAPAFVQWRPLGLYNGMIAPVTSYSIKGFIWYQGESNTKNPGEYENLLKALIADWRQ + KWNMGNLPFLYVQLPNFMEASEIPMESSWAELREAQRRTLSVPCTGMAVAIDLGEWND + IHPVNKKDVGFRLALAAMKTAYRDKTIVAYGPMYQSGKIDGNRIILSFTDTGSGLTVK + NGDRPEAFAIAGADRTFVRADAEIIGDSVAVWSEKVSHPVYVKYAWADNPADANLYNL + EGLPASPFTTE" + gene 1567636..1568325 + /locus_tag="Ccel_1263" + CDS 1567636..1568325 + /locus_tag="Ccel_1263" + /inference="protein motif:PFAM:PF07729" + /note="PFAM: regulatory protein GntR HTH; GntR domain + protein; + KEGG: cac:CAC3603 FadR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="GntR domain protein" + /protein_id="ACL75619.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011711" + /translation="MPIKKVTRQSVSEQVFEQLKEQILSNEWKKGEKIPSENELAALL + GVSRVTVRNALQKLISLGLIETRFGEGSFITDALPGISMNSLIPIAYLKENSLQEILE + YRRVLEGNVAELATKKASAEDVAKLEEAYLAMEKVKDDLEQFSKADLNFHLLLANITK + NSLIIQTFYIFSDVLNRAFSQIVTKRGNSAGIYYHKLLFEAVKGSNSLDAKRIMDEHM + EDLYNTFQTNI" + gene 1568392..1570119 + /locus_tag="Ccel_1264" + CDS 1568392..1570119 + /locus_tag="Ccel_1264" + /inference="protein motif:PFAM:PF00920" + /note="PFAM: dihydroxy-acid and 6-phosphogluconate + dehydratase; + KEGG: amt:Amet_0502 dihydroxy-acid dehydratase" + /codon_start=1 + /transl_table=11 + /product="dihydroxy-acid and 6-phosphogluconate + dehydratase" + /protein_id="ACL75620.1" + /db_xref="InterPro:IPR000581" + /translation="MANVKQKSSSERLLWAQFDALQLGSGWDEEDIIKPQILIEDAFG + DSHPGSTHLNQLTEQARIGVFEAGGCPARFHTTDICDGCAQGHKGMNYVLASREAICD + MVEVHGSMVSWDGLILSSSCDKSIPAHLKAAARLNIPAIFIPGGSMRPGPNMTTSLLA + GDISLRQKRKGEISRREIRDYKLTGCPSVGACTFLGTASTMQCMAEALGMALPGSALV + PATMRDILSYAREAGRKIIELAEKGITPDKIMTKEAFVNAVIVHSAIGGSTNATLHLP + DIARELNITLTPEMFDEINHRIPHIGNIFPSGEHLTESFWFAGGIPIMQLMLKEYLNL + DVMTVTGKTLGENLKALEKDSFFNRNIGYLSNYGLKREDVITPLNEIKEKGSIAVLKG + NIAPDGSIVKYSACTESMRKHKGIARVYNSEEDAYSAVVNNEINPGEIIVIRYEGPRG + SGMPEMLMTTEAIVCDKRLNGTVSLVTDGRFSGATRGAAIGHVSPEAAAGGPLSLVET + GDIIEYDIENRSLNVVGINQKEVPLEEVQRIFAQREKNKKVVLPPVRKGLLKRYTESA + LSAMEGAGY" + gene 1570141..1571034 + /locus_tag="Ccel_1265" + CDS 1570141..1571034 + /locus_tag="Ccel_1265" + /inference="protein motif:PFAM:PF00701" + /note="PFAM: dihydrodipicolinate synthetase; + KEGG: cdf:CD3000 putative dihydrodipicolinate synthase" + /codon_start=1 + /transl_table=11 + /product="dihydrodipicolinate synthetase" + /protein_id="ACL75621.1" + /db_xref="InterPro:IPR002173" + /db_xref="InterPro:IPR002220" + /translation="MKCEYITPAVTIFDENRKLDIESLHNLYDHLIKGGVDGILILGS + IGEFFAIPIESKKELIRLAVKKISRRTKLLVGTASMDINETIELSKYACEQGVDGIVV + ISPYYFGLSQQSVEEYYDKVADECPGDLYLYSFPDRTGYDISPNVTLNLLRKHKNIVG + YKDTIPGMDHTRELIKLIKPEFPDFKIYSGFDDNFAHNVMSGGDGCIGGLSNLVPEAC + SAWVKAFKDNDLKMISDIQRKIDCLMDIYQVGKPFVPYIKRALMLKGISVKDYCSFPL + PMANEQEILKLKAIMEKSGLI" + gene 1571541..1572287 + /locus_tag="Ccel_1266" + CDS 1571541..1572287 + /locus_tag="Ccel_1266" + /inference="protein motif:TFAM:TIGR00123" + /note="TIGRFAM: cobalamin biosynthesis protein CbiM; + PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; + KEGG: ckl:CKL_3429 cobalt transport protein CbiM" + /codon_start=1 + /transl_table=11 + /product="cobalamin biosynthesis protein CbiM" + /protein_id="ACL75622.1" + /db_xref="InterPro:IPR002751" + /translation="MKRVSVKNYLVCLLIAVCAIFVFPANASAMHIMEGYLAPGWCIS + WGVMCMPFLVIGFFSIKKKIEVSSKNLTLLAMCGAFAFVLSALKMPSVTGSCSHPTGV + GLGAVLFGPTAMSVIGAIILLFQAILLAHGGITTLGANVFSMAIVGPLVSFGVFKLSK + RWGAKAGLAVFLAVFFGDLMTYVITSVELAMAYPDATGSFMVSLGKFISIFGFTQVPL + AVCEGLLTVVIYNVLAKYSAKELKALSAIY" + gene 1572303..1572596 + /locus_tag="Ccel_1267" + CDS 1572303..1572596 + /locus_tag="Ccel_1267" + /inference="protein motif:TFAM:TIGR01165" + /note="TIGRFAM: cobalt transport protein; + PFAM: Cobalt transport protein CbiN; + KEGG: cno:NT01CX_1330 cobalt transport protein CbiN" + /codon_start=1 + /transl_table=11 + /product="cobalt transport protein" + /protein_id="ACL75623.1" + /db_xref="InterPro:IPR003705" + /translation="MKLWKKNLILLVIVVVILAAPPIFIKNAEFAGADGLAEEQITKI + APDYKPWFESLFEPKSGEIESLLFALQAAIGAGVVGFILGRMTSVKGKSGSET" + gene 1572593..1573372 + /locus_tag="Ccel_1268" + CDS 1572593..1573372 + /locus_tag="Ccel_1268" + /inference="protein motif:TFAM:TIGR02454" + /note="TIGRFAM: cobalt ABC transporter, inner membrane + subunit CbiQ; + PFAM: cobalt transport protein; + KEGG: cpr:CPR_0184 cobalt ABC transporter, permease + protein CbiQ" + /codon_start=1 + /transl_table=11 + /product="cobalt ABC transporter, inner membrane subunit + CbiQ" + /protein_id="ACL75624.1" + /db_xref="InterPro:IPR003339" + /db_xref="InterPro:IPR012809" + /translation="MILIDKYAYASKLARISPKVKLIYTMFPLILCISLNSFSVSIVT + IFVMAVTTVGVGKIKFSAYLKLLFIPFGFLMVGTITILINRFDLNHIYLLGIKIDNYA + YGIDRVTLTNSLKLVLNALGGVSCMYCLSLSTPMSDLFQVLRQTKLPAVIVTLMELVY + RYIFVLMDEIGRMNIAKNSRLGNCNFKTSLKSTSELIGMLFIRAYNRSDRVYAALESR + GYNGQFVTLDEEYINGKRMHMLSILLCLLLLSAGLAERFLL" + gene 1573385..1574230 + /locus_tag="Ccel_1269" + CDS 1573385..1574230 + /locus_tag="Ccel_1269" + /inference="protein motif:TFAM:TIGR01166" + /note="KEGG: cpf:CPF_0188 cobalt transporter ATP-binding + subunit; + TIGRFAM: cobalt ABC transporter, ATPase subunit; + PFAM: ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="cobalt ABC transporter, ATPase subunit" + /protein_id="ACL75625.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005876" + /db_xref="InterPro:IPR017871" + /translation="MYIIETKKLSYSYDGEHQALENVSISIKKGKTTAVLGGNGAGKS + TLFLNLNGVLTPDSGTVFFDGSEVEYNKKGIIEMRKRVGIVFQDPNDQLFSSSVKKDI + SFGAINLGLGVEEVRERVEKAIVQTGIGEYVDKPTHALSFGQKKRVAIAGILAMEPDV + IILDEPTAGLDSKGASDILNLLTKIKEETGVSVILATHEMDIVPLYCDDVFVMDHGKV + VMGGNVREVLSKPELLREHSLRLPRMAHLMEILNQRDKLKVDKTAATISEARASILSL + INGAG" + gene 1574235..1575389 + /locus_tag="Ccel_1270" + CDS 1574235..1575389 + /locus_tag="Ccel_1270" + /inference="protein motif:TFAM:TIGR00312" + /note="TIGRFAM: cobalamin biosynthesis protein CbiD; + PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; + KEGG: cpy:Cphy_1374 cobalamin biosynthesis protein CbiD" + /codon_start=1 + /transl_table=11 + /product="cobalamin biosynthesis protein CbiD" + /protein_id="ACL75626.1" + /db_xref="InterPro:IPR002748" + /translation="MEEFIVKNGKRLKCGYTTGSCAAAAVKAGAVMLLGRTTIDEVIV + NTPKGIRLNLQIGDIYKQKECISCSVKKDAGDDPDVTDGIKIFAKVEKLEKEILIEGG + SGIGRVTKSGLQCAVGEAAINPVPRQMIQEVLKEVSETYGYKGGFSVVISAEDGEEIA + KKTFNPRLGITGGISILGTSGIVEPMSEKALIETIHREINVKITQNNEYFLVTPGNFG + RDFALKRFGLDIDKGVKCSNYIGETIDYAVYNNIKNILLIGHAGKLCKIAGGIMNTHS + RTADGRCEIFAAHAALCGASKECINNIMQSMTTDEINVILREEGLEDAVNISILEKIK + FHLNYRANYKARIEVVMFTDLNRELQDRVYYHTSGAVDMIKELCKESDKG" + gene 1575394..1576074 + /locus_tag="Ccel_1271" + CDS 1575394..1576074 + /locus_tag="Ccel_1271" + /inference="protein motif:TFAM:TIGR01467" + /note="TIGRFAM: precorrin-2 C20-methyltransferase; + PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) + methyltransferase; + KEGG: cpy:Cphy_1375 precorrin-2 C20-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="precorrin-2 C20-methyltransferase" + /protein_id="ACL75627.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR006364" + /translation="MRGILYGVGVGPGDCKMLTLQAVEVLKMADVIAVPDTKGEKTAM + KVVEEYIKDKEVVYCPMPMTRDSDLLEKSHGISCNLIEEQLLKGKNVAFITLGDPTIY + STYMNIQRIMDEKGYITRTIPGVTSFCASAGALNISLCDRGEALHIIPASYGETEELL + DLKGTKVLMKSGKSLADIKVALKRKGLYQYSRMVECCGMENQRVYKSLDEVSDDSSYF + SIIIVKDK" + gene 1576077..1576832 + /locus_tag="Ccel_1272" + CDS 1576077..1576832 + /locus_tag="Ccel_1272" + /inference="protein motif:TFAM:TIGR01465" + /note="TIGRFAM: precorrin-4 C11-methyltransferase; + PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) + methyltransferase; + KEGG: cpy:Cphy_1376 precorrin-4 C11-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="precorrin-4 C11-methyltransferase" + /protein_id="ACL75628.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR003043" + /db_xref="InterPro:IPR006362" + /translation="MVTFIGAGPGAVDLITVRGKTLLETADIVIYAGSLVNPGLLDYT + KKTCEIFNSAEMTLEQVIAVMERGEREKKSTVRLHTGDPSIYGAIREQMDMLTERGIE + YTVVPGVSSFCGAAAALKAEYTLPDVSQTLILTRMEGRTPVPEREEISKLASHKSSMA + LFLSSSLLEELGRRLIAGGYQENTPAAIVYKATWPDEKIVRTCVGELHTAAKENSINK + TALILVGDFLGSEYSRSKLYDPTFSHEFREAVK" + gene 1576835..1577857 + /locus_tag="Ccel_1273" + CDS 1576835..1577857 + /locus_tag="Ccel_1273" + /inference="protein motif:PFAM:PF01890" + /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiG + protein; + KEGG: cpy:Cphy_1377 cobalamin (vitamin B12) biosynthesis + CbiG protein" + /codon_start=1 + /transl_table=11 + /product="cobalamin (vitamin B12) biosynthesis CbiG + protein" + /protein_id="ACL75629.1" + /db_xref="InterPro:IPR002750" + /translation="MRITLAAFTKQGGRLCLNLKQKLNTQGYNAEGYCKYHLDGVEVL + KDDLEEFTKNAFGASDAIVFIGAAGIAVRAIAPFVTSKDCDPAVLVIDERGKYVIPIL + SGHIGGANELASIIAKVLNAQAVITTATDINGRFAADSWAVNAGCHIMNINMIKKVSA + AILNGEKVGLHSDFPIEGSLPDNVIISDSEKVGICISDSSKPIFSETLQLMPKQYVLG + IGCRRNTKYSELLNFVNFILDINGISPYAIEAIASIDLKSNENAICSLSTDWKIPFYT + YSANELAELPGDFSKSGFVKEITGVDNVCERAAVKANSGRLVVPKCSWDGITAALSKR + DWRCRF" + gene 1577854..1578864 + /locus_tag="Ccel_1274" + CDS 1577854..1578864 + /locus_tag="Ccel_1274" + /inference="protein motif:PFAM:PF05201" + /note="PFAM: Shikimate/quinate 5-dehydrogenase; + Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; + KEGG: cth:Cthe_2525 glutamyl-tRNA reductase" + /codon_start=1 + /transl_table=11 + /product="Tetrapyrrole biosynthesis, glutamyl-tRNA + reductase-like protein" + /protein_id="ACL75630.1" + /db_xref="InterPro:IPR006151" + /db_xref="InterPro:IPR015895" + /translation="MTIISASLDYKSAAIDVREKFSYTSTKIREILKNIKAVDGVSGA + VLLCTCNRTEVYISGENIENLNPAMFLCRMSGFIDHKLLMPLFSIRCDSESIFHLMEV + ACGLQSMVLFEEQIITQVKHAAAIAREEKTIDSTLETLFRLSITAAKKAKTEVKVKAV + PTSAAESAVSELSKKYCFTHKKVLVIGNGEIGRLCCKKLLELGADLTITLRKYKHGEI + IVPVGCNTISYDEREGFLSCADVVISATTSPHFTITRDMVEKHQRKPEFFIDLALPRD + IEPEISKIEGVESYNLDRFCTDFSVLNHKEVRKIREVIYGFILQFEKWENYRKEAGLI + KE" + gene 1578877..1579611 + /locus_tag="Ccel_1275" + CDS 1578877..1579611 + /locus_tag="Ccel_1275" + /inference="protein motif:TFAM:TIGR01466" + /note="TIGRFAM: precorrin-3B C17-methyltransferase; + PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) + methyltransferase; + KEGG: cpy:Cphy_1378 precorrin-3B C17-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="precorrin-3B C17-methyltransferase" + /protein_id="ACL75631.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR006363" + /translation="MKLYVVGIGPGEDCQLTGKAIRAIEESQLVIGYDVYIDLIKHLL + PDKETLTTPMKKEVDRCKLAVEAAMAGKKVAVISSGDAGIYGMAGLIYEVLAEYKATD + IQIEVIPGITAASSAAAVLGAPLTHDFAVISLSDLLTPWEVIGKRLRLAAEAGFAICI + YNPSSKKRSDYLKKACEIILTVADRDTPCGYVRNIGREGQTSKILTLEELVQEQVDMF + STVIIGNKNTRVINDRLVTSRGYKGI" + gene 1579636..1580859 + /locus_tag="Ccel_1276" + CDS 1579636..1580859 + /locus_tag="Ccel_1276" + /inference="protein motif:TFAM:TIGR00715" + /note="TIGRFAM: precorrin-6x reductase; siroheme synthase; + PFAM: Precorrin-6x reductase CbiJ/CobK; + KEGG: aoe:Clos_1326 precorrin-6X reductase" + /codon_start=1 + /transl_table=11 + /product="precorrin-6x reductase" + /protein_id="ACL75632.1" + /db_xref="InterPro:IPR003723" + /db_xref="InterPro:IPR006367" + /translation="MHMKVLVFSGTTEGREISQFLADKGVSVTACVATEYGNMVMPSD + SRIEVRTGRLTEEQIIKMVSDYSFVIDATHPYAELVTKNIKSACNSTGVEYIRLLRPS + ISAGKVIEVNDTKEAVKYLNKVEGNILLTTGSKELEAFTGVSDYDTRIFARVLPSAEV + VDKCNKLGFKGKTLICMQGPFSYEMNIATLKQINARYLVTKDTGSAGGFQEKISAAEA + LGVTVVLISRKVESGGLTISHLKTVIMDRLGLCKEPQHGRFPLFIELTGKKVLVAGGG + EIAARRVKTLLKFGGDIYLVSPHLIPELQEMFSRKLFNYREGYYESRDIQNKFLAVAA + TDDRETNHKIYMDAKEKGIHMSIADCREECSFYFPAIFEFDGIVGGLVSKNGDSHSLV + KAVAKKIRKIGQATH" + gene 1580898..1581779 + /locus_tag="Ccel_1277" + CDS 1580898..1581779 + /locus_tag="Ccel_1277" + /inference="protein motif:TFAM:TIGR00212" + /note="TIGRFAM: porphobilinogen deaminase; + PFAM: Porphobilinogen deaminase; + KEGG: aoe:Clos_1327 porphobilinogen deaminase" + /codon_start=1 + /transl_table=11 + /product="porphobilinogen deaminase" + /protein_id="ACL75633.1" + /db_xref="InterPro:IPR000860" + /translation="MKKIRIGSRDSKLAIIQSEMVMAAIREFDPDIELELITMKTTGD + KILDKTLDKIGGKGLFVKELDYALYNNEVDITVHSYKDMPLEDNPKLPVVALSKREDP + RDAFVLPQGEIAENNEPIGSSSQRRQLQLKALFPNRKTAPIRGNVQTRLKKLDSGEFS + AIVLAAAGIKRLGLESRISRYFSVDEILPAASQGIIAVQGRAGENFDFLKLFHSEESL + CISQAERTFVREMNGGCSTPIAAYATIVESEIILKGLYHNEATGESKKECVSGSRQNP + VELGYELVKKMESCRRI" + gene 1581797..1583311 + /locus_tag="Ccel_1278" + CDS 1581797..1583311 + /locus_tag="Ccel_1278" + /inference="protein motif:TFAM:TIGR01469" + /note="TIGRFAM: uroporphyrin-III C-methyltransferase; + PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) + methyltransferase; Uroporphyrinogen III synthase HEM4; + KEGG: cth:Cthe_2528 uroporphyrinogen-III synthase / + uroporphyrinogen-III C-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="uroporphyrin-III C-methyltransferase" + /protein_id="ACL75634.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR003043" + /db_xref="InterPro:IPR003754" + /db_xref="InterPro:IPR006366" + /translation="MKHGFVALVGAGPGDKGLITLRGAELLSKADVVVYDRLVSHEII + KMIPPEVEKIDVGKENKFHLVKQEDINRILLNKSLEGKNVIRLKGGDPFVFGRGGEEL + ELLQENDIPFEVVPGVTSAVAALCYGGIPATHRDFCSSMHIITGHAREGGQLSIPFNE + LKELNGTLVFLMGLSSLAYLMKGLLNAGMDKDMPAAIIENGTRPNQRKLVATVGTLEQ + KALEMGIKSPAIIAVGKVCTLSDKFNWFMKKPLFGTKVLVTRPKASSSTIVEKLRQLG + AEPLEYPCIEVVPIPQNEKLCSVCEKLSEYGWILFTSKNGIQIFFDYLNSQGLDARVL + ANIKIGTVGSQTARALKEVGLISDFTPEIFDGSHLAQGVSQLVGENEKVLICDAAIAS + DDIVNIFNNNNIKFDRVPLYHTNYINENSDEIRKMIIDGELKYITFTSASTVEGFMAS + VKDIPLGSLTAVCIGNQTAQAAKKYNLTYVISEKSTIDSITDKLLEIGGGNIDD" + gene 1583304..1584281 + /locus_tag="Ccel_1279" + CDS 1583304..1584281 + /locus_tag="Ccel_1279" + /inference="protein motif:PFAM:PF00490" + /note="PFAM: delta-aminolevulinic acid dehydratase; + KEGG: aoe:Clos_1329 delta-aminolevulinic acid dehydratase" + /codon_start=1 + /transl_table=11 + /product="delta-aminolevulinic acid dehydratase" + /protein_id="ACL75635.1" + /db_xref="InterPro:IPR001731" + /translation="MINRPRRLRTGEVLRKAVRETRLSTDSLIQTLFIIEGNNIKKEI + SSLPGQYHYSPDMVGEAIENALNADVKSVLLFGLPEHKDEKGSEAYNENGVLQQGIRE + IKQRYPQMQVITDICMCEYTSHGHCGILEGERVDNDRTLPYLEKIALSHARAGADIVA + PSDMMDGRINALRTALDKNGFTDIPVMSYAVKYASSFYGPFREAAGSAPAFGDRKSYQ + MDYHNRREAVKEALLDVEEGTDILMVKPALAYLDVIKEVREKTQLPLAAYSVSGEYAM + IKAAAAQGLIDEYGVMCESAVSIFRAGADMLITYFAKEISQAIKKGDIG" + gene 1584278..1585582 + /locus_tag="Ccel_1280" + CDS 1584278..1585582 + /locus_tag="Ccel_1280" + /inference="protein motif:TFAM:TIGR00713" + /note="TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; + PFAM: aminotransferase class-III; + KEGG: aoe:Clos_1330 + glutamate-1-semialdehyde-2,1-aminomutase" + /codon_start=1 + /transl_table=11 + /product="glutamate-1-semialdehyde-2,1-aminomutase" + /protein_id="ACL75636.1" + /db_xref="InterPro:IPR004639" + /db_xref="InterPro:IPR005814" + /translation="MISSNGLFDRAKKVIPGGVNSPVRAFRAVDLNPLFISRAKGSKL + YDVEEREYIDYVCSWGPMILGHSNDLILKNVENVLHNGLSFGAPVETEVQIAEMIVSM + VPGVEMVRMVNSGTEAVMSAIRLARGFTKRDKIIKFEGCYHGHSDSMLVKAGSGVLTA + GIPDSLGVPQNAAGDTLTAVYNNISSVEQLFQENKNHIAAVIIEPVAANMGVIPPQEG + FLKELSGICRQNSALLIFDEVITGFRLAAGGAQEYFGVEADIVTFGKIIGGGMPVGAY + AGRKEIMEHVAPCGGVYQAGTLSGNPVAMAAGLAQLEILKSKPEIYEDINKKAEFLGN + GFEKIVQKYKAPITLNRVGSLLCGFFSQNPVTNYQEAKLSNTNYYAAYFKSMLNKGIY + LAPSQFEAMFVSSAHTYEDIDATLKAAEETLVENISLMEELI" + gene 1585579..1585941 + /locus_tag="Ccel_1281" + CDS 1585579..1585941 + /locus_tag="Ccel_1281" + /inference="protein motif:PFAM:PF01903" + /note="PFAM: cobalamin (vitamin B12) biosynthesis CbiX + protein; + KEGG: ppd:Ppro_1299 cobalamin (vitamin B12) biosynthesis + CbiX protein" + /codon_start=1 + /transl_table=11 + /product="cobalamin (vitamin B12) biosynthesis CbiX + protein" + /protein_id="ACL75637.1" + /db_xref="InterPro:IPR002762" + /translation="MKAILILAHGSRETKTMETLQKITDMTKAQLADVMLETAYMEFC + DINLEKGLDMLIAKGADDITVVPYFLFEGIHIREDIPGEIEEYLEKHPGIKVNLGNTL + GADPRLADVLADRIREAL" + gene 1585938..1587125 + /locus_tag="Ccel_1282" + CDS 1585938..1587125 + /locus_tag="Ccel_1282" + /inference="protein motif:TFAM:TIGR02469" + /note="TIGRFAM: precorrin-6y C5,15-methyltransferase + (decarboxylating), CbiE subunit; precorrin-6Y + C5,15-methyltransferase (decarboxylating), CbiT subunit; + PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) + methyltransferase; + KEGG: cpy:Cphy_1379 precorrin-6x reductase" + /codon_start=1 + /transl_table=11 + /product="precorrin-6Y C5,15-methyltransferase + (decarboxylating), CbiT subunit" + /protein_id="ACL75638.1" + /db_xref="InterPro:IPR000878" + /db_xref="InterPro:IPR012818" + /db_xref="InterPro:IPR014008" + /translation="MKKKLYIIGAGTGSEDFLTQRALKLMEICDVIYSTSHRFLSDSR + IKVTECSVTEIPKLIEASQDQNIALLVSGDTGFFSITGSLSEKLENKVDIEVVCGISS + LQYFCSKTGNSYENIKVVSLHGRERNILGLISYNPKVFVLTGGENKAHSICKSLSEHG + LTEVKAIVGENLSMPEERIVRGTVKELAGYTFGNLAVMLLVNQNYVNCYIPLNDKDFQ + RGNVPMTKEEVRAVTLAKLAIQPCDTVFDIGAGTGSVAIEMARRAFDGRVYAIEKHPE + ALDLICKNRVKLGAYNIKVVSGTAPDIFEGLPVPDRAFIGGSSGNMAEIVWYLTEINP + GIHIVANAITLESLNAAINSFEENGFETEVVCINSSVSKKVGGYHMMNANSPVYIITG + KIL" + gene 1587129..1588505 + /locus_tag="Ccel_1283" + CDS 1587129..1588505 + /locus_tag="Ccel_1283" + /inference="protein motif:TFAM:TIGR00379" + /note="TIGRFAM: cobyrinic acid a,c-diamide synthase; + PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain + protein glutamine amidotransferase; + KEGG: aoe:Clos_0862 cobyrinic acid a,c-diamide synthase" + /codon_start=1 + /transl_table=11 + /product="cobyrinic acid a,c-diamide synthase" + /protein_id="ACL75639.1" + /db_xref="InterPro:IPR002586" + /db_xref="InterPro:IPR004484" + /db_xref="InterPro:IPR011698" + /translation="MVIIETSKTARIMIVGTGSGCGKTTVTCGILNALVNRGVRTSAF + KCGPDYIDPMFHTEITGIKSRNLDTFLLGDNNLKYLLDKNSAGDDISVIEGVMGFYDG + LGNDGSHSSYSISRLTGTPVVLVVNPKGMALSISAVIKGFRDFMPENNIEGVIINSVS + PGLYQMYKAMIEEKTGIRVLGFLPTMPEAVIESRHLGLVTADEIKDIRKKLNIMAKNA + EEFIDIDGLVRLAQTAGTLEYDPVLIKKKYSCSIAVAKDRAFCFYYEDSLELLREMGA + ELTYFSPLEDKSLPKNIQGLILGGGYPELYAEKLSSNKTMLKSIKEFVSKGLPTYAEC + GGFMYLQQSISDKQNNKYSMTGVLDGNSTMSEKLSRFGYTTLIAKEDNLFCKKGESIN + AHEFHYSDSDNNGNSFEAVKPDGKRKWECIFASDTLFAGYPHIHFYGNTKFAESFLQK + CCNFSKHI" + gene 1588518..1590062 + /locus_tag="Ccel_1284" + CDS 1588518..1590062 + /locus_tag="Ccel_1284" + /inference="protein motif:TFAM:TIGR00313" + /note="TIGRFAM: cobyric acid synthase CobQ; + PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain + protein glutamine amidotransferase; + KEGG: aoe:Clos_0863 cobyric acid synthase CobQ" + /codon_start=1 + /transl_table=11 + /product="cobyric acid synthase CobQ" + /protein_id="ACL75640.1" + /db_xref="InterPro:IPR002586" + /db_xref="InterPro:IPR004459" + /db_xref="InterPro:IPR011698" + /translation="MAKPIMIQGTMSNAGKSLLTAGLCRIFTQDGYRVAPFKSQNMAL + NSYITTDGSEMGRAQVVQAEAAGKAPDVRMNPILLKPTSEKGSQVILGGKPIGNMTTT + EYYAHKHNLLPHIKRAYESLSQENDIIVIEGAGSPAEINLKRDDFVNMGLAKMLKAPV + LIAGDIDRGGVFASLYGTVMLFDEDERKHVKGTIINKFRGDVEILKPGLDMLCDLIHV + PVVGVVPYLHVDIDDEDSLSERFSKKGPLGLIDIAVIKLPRISNFTDFNALEHIECAS + VRYVSGTNELGNPDLIIIPGSKNTMGDLKWMRENGLEVCIKKHAAKNKPVFGICGGYQ + MLCENLGDPYGVEHGGEMKGMGLLKSTTVFEKEKTRTRVMGTFSKVGGIFNGLSGKTF + EGYEIHMGYTASEEGNEGDSSLSNLAEISGNEKPDGMQKGNVYGTYVHGVFDNDEILS + EIAAALMKEKGLEYEKHTFFNLKEYKEKQYNLLADALRECLDMEYIYKVIEEGIENGN + NETNGY" + gene 1590034..1590669 + /locus_tag="Ccel_1285" + CDS 1590034..1590669 + /locus_tag="Ccel_1285" + /inference="protein motif:PFAM:PF02570" + /note="PFAM: Precorrin-8X methylmutase CbiC/CobH; + KEGG: cpy:Cphy_1382 precorrin-8X methylmutase CbiC/CobH" + /codon_start=1 + /transl_table=11 + /product="Precorrin-8X methylmutase CbiC/CobH" + /protein_id="ACL75641.1" + /db_xref="InterPro:IPR003722" + /translation="MEIMKPMDIENKSFEIISHELGDRVLDKNCEPVIKRVIHTTADF + EYADNLVFSEGVIEKSVGILKAGACIVTDTQMAMAGINKAAVARCSCEVMCFMSNSEV + AEQALAEGTTRAAISMRKAAEIEKPLIIVVGNAPTALIELNNLINEGKVEPKLIVGVP + VGFVNVVESKELIINRNIPSIVARGRKGGSNVAAAIVNALLYMASPRNSNQ" + gene 1590678..1591640 + /locus_tag="Ccel_1286" + CDS 1590678..1591640 + /locus_tag="Ccel_1286" + /inference="protein motif:TFAM:TIGR00380" + /note="TIGRFAM: cobalamin biosynthesis protein CobD; + PFAM: cobalamin biosynthesis protein CbiB; + KEGG: cpy:Cphy_1110 cobalamin biosynthesis protein CobD" + /codon_start=1 + /transl_table=11 + /product="cobalamin biosynthesis protein CobD" + /protein_id="ACL75642.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR004485" + /translation="MKIIIEVAIGFILDLIFGDPPWLPHPIRLIGWFVSKGEKLLRQA + FPKTQKGEFVAGAVLAILITAGTFVIPLLLLYFLGKVSIYIEVAVASLFCYQILATKS + LKTESMRVYYHLKDHDMANARKYLSWIVGRDTQNLTEEGIARAAVETVAENTSDGVIA + PLIFLVLGGAPLGFLYKAVNTMDSMIGYKNDKYLYFGKFAARFDDVLNFIPAVLSAYM + IIAASFVCGLDYKNALRIYKRDKRNHSSPNSAKTEAVCAGALNVQLAGDAYYFGKLVK + KKTIGDNNRSIKTDDIKTANKLMYITAFIAFFILCGFRLVIFQD" + gene 1591718..1592788 + /locus_tag="Ccel_1287" + CDS 1591718..1592788 + /locus_tag="Ccel_1287" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aminotransferase class I and II; + Allinase-like; + KEGG: cbk:CLL_A2918 threonine-phosphate decarboxylase" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class I and II" + /protein_id="ACL75643.1" + /db_xref="InterPro:IPR004839" + /db_xref="InterPro:IPR006948" + /translation="MRKLIHGGDIYSKRNLPNNTKLIDFSANINPLGLPEGVKKAILD + SIDDFCNYPDPLCRELKKEISAYENVPEEYLFCGNGAADVIYRIASAIKPGKTLLTAP + TFSEYEEAVKVFDSNITYHYLLREKNFNIDTDILDNITSDIRLMFLCNPNNPTGILTE + KEMVLRIAEKCKATNTILVVDECFMEFLENPGDYSIVDSLDTYDNIIVLKAFTKIYAM + AGLRLGYGICSDENIIEDLHRAGQPWNVSVAAQKCGMAALKEIDYVNRTRKLIKYNRI + FLQNSLRKLGFEVINSKANYVLFRTEIKSLSFKLEKFGILIRSCDNYRGLDNKYFRIA + VKSREDNEYLVNCIKKILLALH" + gene 1592861..1594090 + /locus_tag="Ccel_1288" + CDS 1592861..1594090 + /locus_tag="Ccel_1288" + /inference="protein motif:TFAM:TIGR01767" + /note="TIGRFAM: 5-methylthioribose kinase; + PFAM: aminoglycoside phosphotransferase; + KEGG: bcz:BCZK0318 5-methylribose kinase" + /codon_start=1 + /transl_table=11 + /product="5-methylthioribose kinase" + /protein_id="ACL75644.1" + /db_xref="InterPro:IPR002575" + /db_xref="InterPro:IPR009212" + /translation="MSKFDKYFLMSSSDAVDYAAEKLSIFACDSELDCKEIGDGNLNY + VFRVWDKKSDKSVIIKQAGYTARISDDFKLSPDRNRIEAETLRFQGDLAPGLVPIVYK + YDDIMSCCSMEDLSDYTIMRQALLQHKIFPNFAEHITTFMVNTLLLTSDIFLNHQEKK + SLVKSYTNPELCEITEDLVYTEPFNDYKHRNDVFPPNLDWVKKELYSDNELKLEVAKL + KFEFLTNAQALIHGDLHTGSIFVNENSTKVIDPEFAFYGPMGYDVGNIIANMIFAWVN + ADATMDNEDESITFKSWVENTICEIIDKFKAKFFKIFREEAKEILAKTPGFSEWYLSQ + VLHDTAAVAGLELCRRIVGMAHVKDIISIDAESARLRAERICITIAKRYIKNRESYNF + GEQFVNTLKEVENEFSQ" + gene 1594104..1595198 + /locus_tag="Ccel_1289" + CDS 1594104..1595198 + /locus_tag="Ccel_1289" + /inference="protein motif:TFAM:TIGR00512" + /note="TIGRFAM: translation initiation factor, aIF-2BI + family; eIF-2B alpha/beta/delta-related uncharacterized + protein; + PFAM: initiation factor 2B related; + KEGG: sth:STH2068 translation initiation factor IF-2B + subunit alpha" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor, aIF-2BI family" + /protein_id="ACL75645.1" + /db_xref="InterPro:IPR000649" + /db_xref="InterPro:IPR005251" + /db_xref="InterPro:IPR011559" + /translation="MTDIAKNVYNIETVILDDTHSELIILDQTLLPAETVFLKLKTQE + EIWEAIYKLRVRGAPAIGIAAAYGIYLGAKASKATDYDGFYSEIIKLKEYLASSRPTA + VNLFWALDRMDECVKRNKEKTVNDIKFDLLKESQNIKQEDIWVCRSIGEYGLTLLKPG + MGILTHCNAGQLATSKYGTALAPIYVGHEKGYNLKVFADETRPLLQGARLTAYELNKA + GVDVTLICDNMASAVMKNGWVQAVFVGCDRVAANGDTANKIGTSGVAILAKNYNIPFY + VCAPTSTIDLSCASGKDICIEERKPEEVTEMWYEKRMAPKDIKVFNPAFDVTDEKFIT + GIITEYGIVKAPYSESLKEIFKRKRGTVQW" + gene 1595192..1595989 + /locus_tag="Ccel_1290" + CDS 1595192..1595989 + /locus_tag="Ccel_1290" + /inference="protein motif:PFAM:PF00596" + /note="PFAM: class II aldolase/adducin family protein; + KEGG: cpy:Cphy_1177 class II aldolase/adducin family + protein" + /codon_start=1 + /transl_table=11 + /product="class II aldolase/adducin family protein" + /protein_id="ACL75646.1" + /db_xref="InterPro:IPR001303" + /translation="MVEKNNSKYLTDDEAARAIVEIGKRMYLKGFVASNDGNISIKTG + ENEILTTPTGVSKGYMTKEMLVKVDLNGEIISGNTKPSSELKMHLRVYSENPDVMAVT + HAHPPVATSFAIAGIELDRAILPEAIVNLGTVPIAPYATPGSQAVPDSIAPFCREYNA + VLLANHGAVTWGKDVFEAYHRLESLEYYATVLMYTGNIIGKANELSSKQISQLVEIRR + KLGINTGGTPKVKDLEYNTTDNSQDEFLIRDIVEQVTKIVLEKYKSK" + gene 1596075..1596389 + /locus_tag="Ccel_1291" + CDS 1596075..1596389 + /locus_tag="Ccel_1291" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75647.1" + /translation="MNDKFSKVILTGILICLIVIAFKPNNNQPFTTTNPNHNISNGEE + IIQLSPNKIAVVDNRNNSGLWGTILVFNYNPVKKAFEYESTMNYEDYFRNPQKYGLES + SK" + gene 1596737..1597075 + /locus_tag="Ccel_1292" + /pseudo + gene 1597381..1598664 + /locus_tag="Ccel_1293" + CDS 1597381..1598664 + /locus_tag="Ccel_1293" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75648.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 1599115..1600899 + /locus_tag="Ccel_1294" + CDS 1599115..1600899 + /locus_tag="Ccel_1294" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75649.1" + /translation="MPDIKVKDPNSLEVKIDGRVYDLSKIPEYKDLLVQKEVANVLNQ + LSLKDITENLYLTVELFYVAYNGVAGARGGTIQAEIASIQSDLALLCNECVETMTSFK + EETGNILTLLRDMYRWLTQGEEKMAIKKLSHCSESSATMSAAANRLAEKFKELQIRST + KARSNTIEEEASEQDKKLAAEKAERELKAKQEAEKINQQELVAQIGEIQQRYDEAKAR + EEKEATKSLIMGITSAIATSVSAGLGAFAAAKNPISTAISGTVSSMELSKAQKEVNDK + KAQSDKAQQDLLTAKDNQTKKKNRVESLTTEIAALNKQILENEKNQETLVKLKQQLDT + KNGELTKAKDDLKAADSKVEELQKVSNNSTAAYTAAATSLQDLAKSTGQMTQAAANAE + ESIHAEKMSYLNQKLNLEKQKRESLVALTQYAETVKNLKADESMATVSVNSLHAAVEA + LGKIIATLTNASLFWDQMSSFCKKMTNQGFQQDLKDLIAPDTGLSLEKRIEEYKSLRF + MQQFLGYMCQWVAINGLSGEYLITASEAQKKAVEYLKQSPTIEEALKKAPELAKNMEL + MLNKNLLESGKVIADLEQQKSLIENKKS" + gene 1600912..1601820 + /locus_tag="Ccel_1295" + CDS 1600912..1601820 + /locus_tag="Ccel_1295" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bhr:BH0553 myosin family protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75650.1" + /translation="MDTIQKNNFVKVIEALKNAVEQIKEQKKDTAINTILGVANNIGF + LNNASVKLKLSAEVEQQKITDTIKEIILSEASIHESYLNTQKCINDLNGAISNNNIKK + NEILKQIESLKKELNEDERLLREHRKKLDELNDSSAFSIIRSILSLGLDRAIMGVQCL + INNDAGRINELNDSIKKYNEILKNNSDEFNKSDDLLKGLSEQKKLYEVSIAKLKEKES + VLHTSEQVSRNNLAFITNAALFYGRLSVMLDQIEHRIDDVVDIVEELNDKTPTIIDFD + SSGTSLISLKEAMVKFDKILETSEVA" + gene 1601822..1602265 + /locus_tag="Ccel_1296" + CDS 1601822..1602265 + /locus_tag="Ccel_1296" + /inference="protein motif:PFAM:PF02557" + /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /codon_start=1 + /transl_table=11 + /product="peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /protein_id="ACL75651.1" + /db_xref="InterPro:IPR003709" + /translation="MPSVKFKYPDEKSVYPKLISAVNALCIAMGKSCTCTSGYRSLEK + QKIINAQKLAERKDNYQKPNGAVYNKQGQCIAAEYGKSNHCYCIAMDISDGWFKALTN + KEIEKFGLVKPMSYEPWHVQLIEHTGLTLAQKIALKESVLGIKRS" + gene 1602273..1602563 + /locus_tag="Ccel_1297" + CDS 1602273..1602563 + /locus_tag="Ccel_1297" + /inference="similar to AA sequence:KEGG:Cthe_2499" + /note="KEGG: cth:Cthe_2499 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75652.1" + /translation="MNEFYSWDNLSSFSGIVACVTLIIQFTKVSLDKVWKIPTRFVVW + ILSYILLIIVSWFNAGITINIVLMSALNAVVVTLASMGAYEATFRKVDEKQK" + gene 1602832..1604265 + /locus_tag="Ccel_1298" + CDS 1602832..1604265 + /locus_tag="Ccel_1298" + /inference="protein motif:PFAM:PF01270" + /note="PFAM: glycoside hydrolase family 8; cellulosome + protein dockerin type I; + KEGG: chu:CHU_1240 bifunctional xylanase/esterase; CBM9 + module, glycoside hydrolase family 8 protein and + carbohydrate esterase family 4 protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 8" + /protein_id="ACL75653.1" + /db_xref="InterPro:IPR002037" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKFFACLLVLAIIVTIVPINIASAETGGYYATGNYRNVFVETG + RTEAQVQDKMNTMFDKFFKGDTNNQRLFYETGTDEAYIRDTGNGDVRSEGMSYGMMVC + VQMDKKKEFDMLWKWARNHMYQTSGQFKGFFAWQCNYDGGIIDSTPASDGDEYFAMAL + LFAARRWGNGTGIYNYEAEAQTILDAMLHQSDDGVGYNMINKNANQVVFCPSAGNYDF + TDPSYHLPAFYELWAMWGPERDRATWSKVAATSREFLKKSTHPTTGLNPDYANFDGSA + KEVSWSSGHGDFRFDAWRVIQNSCVDYAWWQKDSWPATTFAPKIQAFFKNQGLSTYGN + QYTLSGSKLSSDHSPGLVAMNAVSALASDATTAKPFVDELWNTAVPSGQYRYYDGMLY + MLGMLNVSGNFKIWGAPTEPSVTRGDINDDGTIDSVDFALLKSYLLGRTTTLPNMKAA + DLNGDGVVDAMDWAVLRQYLLGIIKTL" + gene 1604455..1606330 + /locus_tag="Ccel_1299" + /pseudo + gene 1604841..1605990 + /locus_tag="Ccel_1300" + /note="ribosomal slippage" + CDS join(1604841..1605119,1605121..1605990) + /locus_tag="Ccel_1300" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75654.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSVDADETEQLKQAHEAQIDELHRQIGQLTVERNWLKKKLNNSASRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRVKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTHRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITCCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 1606551..1606907 + /locus_tag="Ccel_1301" + CDS 1606551..1606907 + /locus_tag="Ccel_1301" + /inference="protein motif:PFAM:PF03965" + /note="PFAM: Penicillinase repressor; + KEGG: hmo:HM1_2921 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional repressor, CopY family" + /protein_id="ACL75655.1" + /db_xref="InterPro:IPR005650" + /translation="MDEIKIFDAELRFMNIIWKNEPIKSTELVSIANEDLGWKKSTTY + TVIRRLCERGIIKNKNTRIQSLVKREQVMQHETQEHIEKIYSGSLKLFFTTFLKRKKL + SKDEVEELRKIVDENS" + gene complement(1606915..1607457) + /locus_tag="Ccel_1302" + CDS complement(1606915..1607457) + /locus_tag="Ccel_1302" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ckl:CKL_2387 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, TetR family" + /protein_id="ACL75656.1" + /db_xref="InterPro:IPR001647" + /translation="MIKMSKSRQFTMDILLDAFWKLYRNYDIEKITIKKITDTAGYNR + ITFYDYFKDIYDALDCLENKILSEIELKIHKLFMATGSATTDTFTEQVVFLFNEYRDF + LMRFFSDSRNKSFEGKLQNFIKSLLTKYSKVSLDFNNKYVLEFYASGLVGAFSMWFKS + DCDTPLKAFLYIIYSIIKAN" + gene 1607558..1609537 + /locus_tag="Ccel_1303" + CDS 1607558..1609537 + /locus_tag="Ccel_1303" + /inference="protein motif:PFAM:PF08757" + /note="PFAM: Spore coat protein CotH; + KEGG: mla:Mlab_1597 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Spore coat protein CotH" + /protein_id="ACL75657.1" + /db_xref="InterPro:IPR014867" + /translation="METKRYKYGIFIIFAVCLLVVIFFLMFMEDSNSIPTHGGLSPKD + LSINDIKYPGTFFDNSKVHTIDIQVDNRTWENMIENAAYEQYIPCTMIIDGARINEVG + IRPKGDTSLKQVIDMDSQNFSFKVEFDHYRNQTFDGLDKMVLNNCLQDTTYMKDYLAQ + HMMNYMGIAAPLTSYVNIKLNGKDFGFYLAIEAVEKSFCLRNFGSIDGKLYKPDALDL + PKYDYIKIMGYETEDGQSAVENFINIMSGNAYKGCDRSTRVDMVGDMAGLLIDSNGIN + TDVTGLTYIDSNPKSYKAILESSVFSINESDESRLINSIRKLNRGEDLDNIVDTDSLI + KYFVVHNFVNNYDGYTSVFSHNYYLHERNGKLSMIPWDYNLAYGSFSVEPGNSSSSPF + GNYIKTTDALYGMSSAKSMVNYPINTPVFNTDLEKRPMINQILKNSEYSDKYHQYFEK + FITDYFISGYFDRFYESTVDMISPYVKNDKKNFLTYSQFVNGINELNKFCKLRAKSVQ + GQLTNAIPSTLKGQQEHPEALVDTQDLDMTKTITTYSILGITNEDIDGVLKILINYIP + KDYKTDGKIDMSKFKASDITYLKKIFGVMVPLAFEVSKSTKASDNTTVNTRLSRILLI + LSLIAMIIFTILVSRYSRVKYKKRKVRREKLEITS" + gene 1609521..1610195 + /locus_tag="Ccel_1304" + CDS 1609521..1610195 + /locus_tag="Ccel_1304" + /inference="similar to AA sequence:KEGG:Mlab_1595" + /note="KEGG: mla:Mlab_1595 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75658.1" + /translation="MKLRHEYKIFLNYSDYLTVRSRLRAVIQHDNHVDETGEYKIRSL + YFDNIYNKALYEKISGVSKREKFRIRCYNDNYDFIKLEKKSKINGMCNKVSETVTKEE + VRCIINGDIDWMLDSKRPLVSELYTKMKTEQLRPKVIVDYNREPFVYPAGNVRITLDR + NVRTSINSIDMLDPDVPTVLAEGRTIILEVKYDNYKPTMISDIVMVQDRLISAFSKYV + AGRKFG" + gene 1610218..1610883 + /locus_tag="Ccel_1305" + CDS 1610218..1610883 + /locus_tag="Ccel_1305" + /inference="similar to AA sequence:KEGG:CPF_1142" + /note="KEGG: cpf:CPF_1142 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75659.1" + /translation="MDSFLNSSFIKNATAVSGFDMFVGIIVSFIIGFFIFTVYKKTFS + GVMFSSNFGLSLVGMAMITCAVILAVSSNVVLSLGMLGTLSIVRFRTALKDPFDIVFL + FWAITSGIIVGAGMIPLAVVTSLLMGIVMTVFVNRKSRTTPYIIVVNCENSDIEDSVL + NLIESKSAKSTVKGKTVSRTGMELTVEVQLKDGYSKFVNDIINIEGVVNAVMVSYNGE + YMG" + gene 1610915..1611592 + /locus_tag="Ccel_1306" + CDS 1610915..1611592 + /locus_tag="Ccel_1306" + /inference="protein motif:PFAM:PF01569" + /note="PFAM: phosphoesterase PA-phosphatase related; + KEGG: cno:NT01CX_1615 PAP2 family protein, putative" + /codon_start=1 + /transl_table=11 + /product="phosphoesterase PA-phosphatase related" + /protein_id="ACL75660.1" + /db_xref="InterPro:IPR000326" + /translation="MDNFVTESNRKNKHNKIFVNTIFLLLMGFAFAGLILLIKSGGID + GFDSTVYDSLRSLKSHTTKQIVKFLGGIGDPQVNLYLGLAIAALGIVVFANRGGYFKY + ILYAAAILIVSFLNPLLKEVFKRPHPDAEVDKFSFPSSHAAMAFMFYLVLYIVINKHI + KMKVGRIALAVFCIIMPILIGFSRVYLTNHYASDIIGGYLESSIIFTIMLLVNNIVKC + FSEKNKS" + gene 1611730..1612695 + /locus_tag="Ccel_1307" + CDS 1611730..1612695 + /locus_tag="Ccel_1307" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; + KEGG: cth:Cthe_3094 glycosyl transferase family protein" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL75661.1" + /db_xref="InterPro:IPR001173" + /translation="MSKKLLSIVVPVYNEQEVINETFKRLSGVFKNYFMGVEYIFIND + GSKDNTYFKLKEIANANTCVRVINFARNFGHQIAITAGMDYAQGDAVVIIDADLQDPP + EVILQMVEQWNQGYEVVYGKRLQREGETFFKKLTAKMFYRFLDSMTDVKLPVDVGDFR + LIDRKVCDAMKCLPERSRYVRGLVSWVGFKQTSVEYRREKRFAGETKYPLKKMLKLAG + DGIFSFSYKPLKLATFAGMLVSVISFIYLIVVLVQKLVKNNVASGWASSMAVSLLFNG + VMLIVIGIMGEYVGRIYEEVKARPLYVVGELMGFEDETERKNDIK" + gene 1612692..1614122 + /locus_tag="Ccel_1308" + CDS 1612692..1614122 + /locus_tag="Ccel_1308" + /inference="similar to AA sequence:KEGG:BT9727_5109" + /note="KEGG: btk:BT9727_5109 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75662.1" + /translation="MNSRNRDVLNKTIIIIMAVLTAYLLYLNFLYSAYNNALIYTLLV + VPTVFIIYLLAYKINISPLAFFITIFVLAFFSKGLIAITSNTLPISDFNTFYNCAVRL + INGDKSFGHGFYFTSFAYQTGPVIYYSMIMKLFGTGLLPLKLVNCFFMAGSNSLVYLI + ARKISNDYTARFAALLYLLYPAPYFLAPVLTNQHFAACMFLLSIYLLLETRINFPLRN + LTAGIVLSFGNTVRPLGVVILGGVVVWAITQSIRDKKLVRIGGSVIMIAAYLLMSFTF + STIVKKANINPEGLNNNYPLWKFVVGFNYETKGTFSYPDQNEIFYIDDFEKRNEVSKR + VIKERISISPAKMFNLINTKQKIMWSNFDTMKWGFYDKVDNHLVPSEILKKYELPILK + TEKMYYILAFMLMFAGLFLTLRKKTETGIVLIASILGCYFAAHAIIEVQVRYRYFAIM + LVFVLAAKGSELLMSGFHGYRKKYRL" + gene 1614209..1615003 + /locus_tag="Ccel_1309" + CDS 1614209..1615003 + /locus_tag="Ccel_1309" + /inference="protein motif:PFAM:PF00303" + /note="PFAM: thymidylate synthase; + KEGG: chu:CHU_1289 thymidylate synthase" + /codon_start=1 + /transl_table=11 + /product="thymidylate synthase" + /protein_id="ACL75663.1" + /db_xref="InterPro:IPR000398" + /translation="MQQYLDLCKHILNNGIKKEDRTGTGTISTFGYQMRFDLQKGFPL + LTTKKLHLKSIIHELLWFISGNTNIKYLKDNGVSIWDEWADENGNLGPVYGHQWRSWD + TADGRSIDQLKGVIDQIKNNPDSRRLIVSSWNVGEIEKMALPPCHCFYQFYVVNGTLS + CMLYQRSADVFIGVPFNIASYALFTMMIAQSCGLRAGEFVHTLGDAHIYLNHVEQVKL + QLSRDPRPLPKMNINPDIKDLFQFKYSDFTLTDYDPHPHIKGAVAV" + gene 1615000..1615485 + /locus_tag="Ccel_1310" + CDS 1615000..1615485 + /locus_tag="Ccel_1310" + /inference="protein motif:PFAM:PF00186" + /note="PFAM: dihydrofolate reductase region; + KEGG: gtn:GTNG_1670 dihydrofolate reductase" + /codon_start=1 + /transl_table=11 + /product="dihydrofolate reductase region" + /protein_id="ACL75664.1" + /db_xref="InterPro:IPR001796" + /db_xref="InterPro:IPR017925" + /translation="MISMIWAMGRNNALGCKNRMPWYIPADFAYFKKVTMGKPVIMGR + KTFESIGKPLPGRKNIVITRDTGYDPQGCIVVNSIEKAMEYTEEKEVFIIGGAEIYKE + FLPIADRLYITLIEKEFEADAFFPEIDYSKWKQISCETGIKDEKNPYEYKWLVYERVK + Q" + gene 1615767..1616261 + /locus_tag="Ccel_1311" + CDS 1615767..1616261 + /locus_tag="Ccel_1311" + /inference="protein motif:TFAM:TIGR00168" + /note="TIGRFAM: translation initiation factor IF-3; + PFAM: initiation factor 3; + KEGG: cth:Cthe_1225 translation initiation factor 3" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor IF-3" + /protein_id="ACL75665.1" + /db_xref="InterPro:IPR001288" + /translation="MINEEIRDKEVRLIDADGTMIGILATKEAQKLANSKNLDLVKIA + PQGVPPVCKIMDYGKYLFELAKKEKEARKNQKIISIKEVRFSPSIENHDFEFKVKNAY + KFLKDGDKVKVSVKFRGREMHYTSIGNQILDKFAEAVKDVGTVERRPKLEGKSMIMIL + NPKQ" + gene 1616279..1616476 + /locus_tag="Ccel_1312" + CDS 1616279..1616476 + /locus_tag="Ccel_1312" + /inference="protein motif:PFAM:PF01632" + /note="PFAM: ribosomal protein L35; + KEGG: cac:CAC2360 50S ribosomal protein L35" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L35" + /protein_id="ACL75666.1" + /db_xref="InterPro:IPR001706" + /translation="MPKLKTHSASKKRFRVTATGKIKRGQAWRNHRLISKSRKAKKHH + RLGAYVSAAQEATIKKLIPYK" + gene 1616494..1616847 + /locus_tag="Ccel_1313" + CDS 1616494..1616847 + /locus_tag="Ccel_1313" + /inference="protein motif:TFAM:TIGR01032" + /note="TIGRFAM: ribosomal protein L20; + KEGG: cth:Cthe_1223 50S ribosomal protein L20P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L20" + /protein_id="ACL75667.1" + /db_xref="InterPro:IPR005812" + /db_xref="InterPro:IPR005813" + /translation="MARVKGAVRTRARHKKILKLAKGYFGAKSKLFRMANQAVMKSLN + YAYNDRRAKKRDFRKLWIARINAAARINGLTYSRFISGLRKSGIELNRKVLADLAVND + AAAFAQLAETAKAAK" + gene 1616949..1618148 + /locus_tag="Ccel_1314" + CDS 1616949..1618148 + /locus_tag="Ccel_1314" + /inference="protein motif:PFAM:PF00817" + /note="PFAM: UMUC domain protein DNA-repair protein; + KEGG: ckl:CKL_3439 DinB" + /codon_start=1 + /transl_table=11 + /product="UMUC domain protein DNA-repair protein" + /protein_id="ACL75668.1" + /db_xref="InterPro:IPR001126" + /translation="MDRVVFLVDMNAFFISCEMSRNSEIVGKPAAVAGNPRTRTGIIL + AANYEARKFGVKTTMVIHQALKLCPEMLLVPPDHRFYEKKSIEVMEILKRFSPVIEQN + SIDEAWLDMTGTETLFGSPMDAAHQIMDAINDELGLWCSIGISENKLLAKIASEIKKP + MGITELWLKDVQTKLWPLKVTDLYGIGRQTGMKLNNIGIETIGELANYNSQSLIKYLG + RQGLELQRMANGIDTSQVTPHVSGEMKSIGRSNTLAEDITEIEEVRTTFIEMCEEVGY + EARKNNKKARTIQITIKYSDFKTITRQTSIEPTYLTKDIYETGFSLLKKNWNSLMPVR + LIGISISGFENEGLSGQMSLFDEADLCDNSSRKEEKLEKAIDSIRSKLGANSISRAIQ + IKKPGNK" + gene complement(1618149..1618859) + /locus_tag="Ccel_1315" + CDS complement(1618149..1618859) + /locus_tag="Ccel_1315" + /inference="protein motif:PFAM:PF07238" + /note="PFAM: type IV pilus assembly PilZ; + KEGG: cth:Cthe_0488 type IV pilus assembly PilZ" + /codon_start=1 + /transl_table=11 + /product="type IV pilus assembly PilZ" + /protein_id="ACL75669.1" + /db_xref="InterPro:IPR009875" + /translation="MNANDIIIGTKLEIEIPEYIKSFPSQSSSYISQLVDVIDENTIT + IAAPISEGRYKYLSAGLNITVYFLNQRQELMFFNAVVKEYKKSGYLETFEASITSEFT + KIQRRMNYRLDAVLDCKYAVTADRPLTNEKPEFKELTEAGFKSAHTKNISGNGLCLIL + DNTIDYGLLADISIDLEGMGNIRVLAKAIRSTTIENKKYEVGLNFVYISPQDSSTLTK + FIYHKQRIMLKNNPQCKK" + gene 1619040..1619837 + /locus_tag="Ccel_1316" + CDS 1619040..1619837 + /locus_tag="Ccel_1316" + /inference="protein motif:PFAM:PF01553" + /note="PFAM: phospholipid/glycerol acyltransferase; + KEGG: lip:LI0013 1-acyl-sn-glycerol-3-phosphate + acyltransferase" + /codon_start=1 + /transl_table=11 + /product="phospholipid/glycerol acyltransferase" + /protein_id="ACL75670.1" + /db_xref="InterPro:IPR002123" + /translation="MNMKTYFTGNSYKTAGDKRSIFDKLFLNTRWYFVYGYGKVVVKA + RNLAVKNKYDSEKWAASSYNIVECIEKSGGKLFIEGFDNITKTDGPVVFVSNHMSTLE + TFVFPCIIAPLKEVTYVVKDSLVSMPIFGSIMRSRNPIVVSRKNSRQDLLNVINKGKE + ILAGGRSIVLFPEGTRQEQFNPEKFNSLGIKLAKEAGVPVIPVAIKTDFWGNGKLIKD + IGPIRRKEPVCISFGEPITITGNGKAEHKQVIEYITEKTNEFKKISF" + gene 1619883..1619958 + /locus_tag="Ccel_R0029" + /note="tRNA-Pro1" + tRNA 1619883..1619958 + /locus_tag="Ccel_R0029" + /product="tRNA-Pro" + gene 1620300..1622144 + /locus_tag="Ccel_1317" + CDS 1620300..1622144 + /locus_tag="Ccel_1317" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cth:Cthe_0156 radical SAM family protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75671.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MSVKLSDALLKSVEKPSRYTGNEWNSVIKDPKSVDIRFAFCFPD + SYEVGMSHLGMKILYHLLNERNDCYCERVFAPWTDMEEKMRLNNIPLYGLESKDPIRD + FDFVGFTLQYEMSFTNIINMLDLAGIPLTSDKRTDNDSFVCAGGPCAYNPEPLADIID + FFMMGEGEEIINEVMDAYAKWKGTGRSRQEFLEDIVKIEGIYVPAFYDVSYNEDGTIR + SFEPKKSDYPVKIKKRIIKDMDNAYFPDKIVVPYTDIVHDRIMLEVFRGCTRGCRFCQ + AGFIYRPVREKSHKRLIELANKLEESSGYEEISLTSLSTSDYTELHELTTGLLDKMEE + KKVNLSLPSLRIDSFSLDLMEKAQKVRKSGLTFAPEAGTQRLRDVINKGVTEEDLINA + VSLAFNGGWSSVKLYFMLGLPTETMEDVEGIADLAYKVVNAYKNVPREKKGKGLNVTV + STSSFVPKAFTPFQWEPQDTRESLNEKQMFLKSKIRSKQVTYNYHENRLSLLEAVFAR + GDRKTCKVLLKAWEMGCKFDSWGEHFKFDVWMKAFEECGVDPYFYATRKRDYEELLPW + DHIDIGVSKKYLISESKKALEEKITPNCRVNCGGCGATIFESGICGGN" + gene 1622146..1622853 + /locus_tag="Ccel_1318" + CDS 1622146..1622853 + /locus_tag="Ccel_1318" + /inference="similar to AA sequence:KEGG:Cthe_0157" + /note="KEGG: cth:Cthe_0157 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75672.1" + /translation="MTIIRVKFRRGDEVKFISHLDLMKVFERAIRRARLPIAYSQGFN + PHPCMVFGLPLGVGVTSEAEYGDFEITDDEMPAQEFVDKLNEQLPAGIEILSAKKKLS + KQNIMATIAAAEYIVIVGTPAECNEKTIKGTIDKYLLQKEIIVKKRTKSGVKDVNIRD + MIFDLNFKLQPCGAFNIMKFTVLVSAGSKANLKPDLLIESLCGYLGFEFEIDRIHRTK + LFVRSQDQLLDPMEDVI" + gene 1622863..1624347 + /locus_tag="Ccel_1319" + CDS 1622863..1624347 + /locus_tag="Ccel_1319" + /inference="protein motif:TFAM:TIGR00757" + /note="TIGRFAM: ribonuclease, Rne/Rng family; + PFAM: RNA binding S1 domain protein; ribonuclease E and G; + KEGG: cth:Cthe_0158 ribonuclease G" + /codon_start=1 + /transl_table=11 + /product="ribonuclease, Rne/Rng family" + /protein_id="ACL75673.1" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR004659" + /translation="MVNEIIVDVSPGEIRVGILEDKELAEIHIERTNHQGLVGNIYRG + KVSSVLPGMQAAFIDIGYEKNAFLYVGDAVPKKEYSDDESEVNCNYEEYNISDILKVG + QEITVQVIKEPIGTKGPRVSTHITLPGRNLVLLPNADYIGISRRIENDAERQKLKKIA + EKLKPQNMGLIVRTVSEGKEESDFVEDVSFLIKLWAKIKESENNGPVPRCIHRDINLI + YRSVRDLFTWDVNKFIINSEKEYSKVLELVEMISPLLKSRVELFQKDYKIFDYYQIES + KIERALSRKVWLKCGGYIIIDKTEALTVIDVNTGKFVGESNLEETVLKTNIEATREIA + KQLRLRDIGGIVIIDFIDMNNAEHQQLVLDSLKQSLKDDRTKTIVLGMTELGLVEMTR + KKIRQELSTVISCDCPICDGAGRVYTAETNAMNILREVREHMNSTSSKKIRLEVHPTV + AHAVEENIQSLLEDFTEKKDKKIKVTAVNDIRPAGYRIKDIDTD" + gene 1624492..1624803 + /locus_tag="Ccel_1320" + CDS 1624492..1624803 + /locus_tag="Ccel_1320" + /inference="protein motif:PFAM:PF00829" + /note="PFAM: ribosomal protein L21; + KEGG: cth:Cthe_0160 50S ribosomal protein L21" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L21" + /protein_id="ACL75674.1" + /db_xref="InterPro:IPR001787" + /translation="MYAIIMTGGKQYKVQEGDVVFLEKLAAEEGSSVTFDKVLAVSKE + GNLSFGAPVLESASVSGKVLNHGKGEKIIVFKYKAKKNIRKKKGHRQPYTKVQIEKIN + A" + gene 1624821..1625153 + /locus_tag="Ccel_1321" + CDS 1624821..1625153 + /locus_tag="Ccel_1321" + /inference="protein motif:PFAM:PF04327" + /note="PFAM: protein of unknown function DUF464; + KEGG: cth:Cthe_0161 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF464" + /protein_id="ACL75675.1" + /db_xref="InterPro:IPR007422" + /translation="MIKINIGRDLAGTIKKFVIKGHAGYAEEGSDIVCSAVSAIAYTA + VGAIEGLIGLKGFFKEKNGFMSCKLDMELSPEKSHDANVIMATAEIGFKQIEYAYPDY + VKVLDEEV" + gene 1625158..1625439 + /locus_tag="Ccel_1322" + CDS 1625158..1625439 + /locus_tag="Ccel_1322" + /inference="protein motif:PFAM:PF01016" + /note="PFAM: ribosomal protein L27; + KEGG: cth:Cthe_0162 50S ribosomal protein L27" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L27" + /protein_id="ACL75676.1" + /db_xref="InterPro:IPR001684" + /translation="MIKINLQLFAHKKGVGSSRNGRDSAAKRLGVKRADGQFVLAGNI + LVRQRGTKIHPGVNVGIGKDDTLFALKDGKVKFARLGRDKKQVMIVTAE" + gene 1625605..1626882 + /locus_tag="Ccel_1323" + CDS 1625605..1626882 + /locus_tag="Ccel_1323" + /inference="protein motif:TFAM:TIGR02729" + /note="TIGRFAM: GTP-binding protein Obg/CgtA; + PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub + domain protein; GTP1/OBG domain protein; + KEGG: cth:Cthe_0163 GTP1/OBG subdomain-containing protein" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein Obg/CgtA" + /protein_id="ACL75677.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR006074" + /db_xref="InterPro:IPR006169" + /db_xref="InterPro:IPR014100" + /db_xref="InterPro:IPR015349" + /translation="MFRDSAKIYVKAGNGGNGMVSFHREKYIAAGGPDGGDGGKGGDV + IFVVDEGLNTLIDFRYKKNFKAEPGQDGGTSNRSGKNGEDLIIKVPLGTVVKDELTDM + VLVDLIKPGQTCVIAKGGRGGKGNQHFATPTRQVPNFAKSGDLGEEYSLILEMKMIAD + VGLVGYPNVGKSTILSMVSAAKPKIANYHFTTLVPNLGVVQIEHGKSFVIADIPGLIE + GAHEGVGLGHQFLRHVERTKLLVHVVDVSGVEGRDAVEDFDTINSELQKYNQVLSTRP + QIVAANKMDIPGAEENYKAFKEELEKRGYKVFGISAATNKGLKELLYAVSETLKTLPD + TILLDETQNEEVVYKVQEEKPFEIHIEDGVYVIEGKWLRKVLGSTNITNYESLQYFQR + ALKKKGVITALEEMGIQEGDTVRIYDTEFDYTR" + gene 1626927..1627217 + /locus_tag="Ccel_1324" + CDS 1626927..1627217 + /locus_tag="Ccel_1324" + /inference="protein motif:PFAM:PF01985" + /note="PFAM: protein of unknown function UPF0044; + KEGG: cth:Cthe_0164 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0044" + /protein_id="ACL75678.1" + /db_xref="InterPro:IPR001890" + /db_xref="InterPro:IPR017924" + /translation="MLTGKQRSYLRSIANNLHPIFQVGKGGVSDNLIKQFSDALEARE + LIKATVLKNAECDTKTICEEIAEQTNSEVVQVIGSKFVLYRPSEKNSVIELP" + gene 1627325..1627597 + /locus_tag="Ccel_1325" + CDS 1627325..1627597 + /locus_tag="Ccel_1325" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75679.1" + /translation="MKENYAIQNNTYKCLDKSTIKKLSDNVLLEKTKDTYRFLKLNEI + YLKNIRDDYGKQKIAQLRVQFIHHQLDLLIRECFARGLKHGLNNYY" + gene complement(1627621..1628160) + /locus_tag="Ccel_1326" + CDS complement(1627621..1628160) + /locus_tag="Ccel_1326" + /inference="similar to AA sequence:KEGG:Cthe_0165" + /note="KEGG: cth:Cthe_0165 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75680.1" + /translation="MSSIENSRELAENKLILLYIIHNLESPVTNLLITKIILENKLMN + YIFLQQYLDELCEGKFLTKIDADEKLSYSISPAGKQSLEYFTSLIPAGIKARIDEALA + KYKKSKKNEINIQSDFVAVKENEYIVSLRICEGSFTYIDLKMSVGSRNDANKICDNWA + QNSEKLYSKILSVLTDTSN" + gene 1628361..1629044 + /locus_tag="Ccel_1327" + CDS 1628361..1629044 + /locus_tag="Ccel_1327" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: cth:Cthe_0166 4Fe-4S ferredoxin, iron-sulfur + binding" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL75681.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MSNNLYKELETLVHSMGGTFFGTSEVAEHLPDTLKSYPIAITFG + IRLSDAIIDEIGGEPTFTYFNHYRSVNALIDQISLRLVLAVQAHGKKAYSIAASQSIP + SSPIPFSGVFPHKTGAVLAGLGWIGKNGLFIHKDYGPRVRLGTVLTDMELPYENKMME + GNCNFCNRCVKACPALALTGNQWELGKPRENVVDARACSEYMNRNFKHIGRGSVCGIC + IKVCPCPVS" + gene 1629265..1629852 + /locus_tag="Ccel_1328" + CDS 1629265..1629852 + /locus_tag="Ccel_1328" + /inference="protein motif:PFAM:PF01227" + /note="PFAM: GTP cyclohydrolase I; + KEGG: cbb:CLD_2996 GTP cyclohydrolase I" + /codon_start=1 + /transl_table=11 + /product="GTP cyclohydrolase I" + /protein_id="ACL75682.1" + /db_xref="InterPro:IPR001474" + /translation="MSIDRKKVEEHIRGLLVAIGENPDREGLKETPSRVAQMYQEVFE + GISYTNDEIAEMFNKTFEEDLVIPKDNKEIVLVKDIDIFSYCEHHMALMYNMKVAVAY + IPNDKILGLSKIARIADMVGKRLQLQERIGSDIAEIMQKITDSEDVAVIVEGQHACMT + TRGIKNTGSRTTTTTLRGAFKTDTNLTNRLMMLYK" + gene 1629867..1630346 + /locus_tag="Ccel_1329" + CDS 1629867..1630346 + /locus_tag="Ccel_1329" + /inference="protein motif:TFAM:TIGR00277" + /note="KEGG: amt:Amet_2156 metal dependent + phosphohydrolase; + TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL75683.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /translation="MKKVHKILSHPQFKKYMELNFQAEQDRKFCRHDIQHSIDVARVA + YIISLENNYNLDKEIIYITALLHDIARWKQYSEKVDHAAEGAVLARGILRDLKMDNND + TEMILDAIAKHRKKEGHSTPLSKVLYAGDKSCRQCIVCSMVEECNRYEDGYKPVLYY" + gene 1630366..1631190 + /locus_tag="Ccel_1330" + CDS 1630366..1631190 + /locus_tag="Ccel_1330" + /inference="protein motif:TFAM:TIGR01496" + /note="TIGRFAM: dihydropteroate synthase; + PFAM: dihydropteroate synthase DHPS; + KEGG: cpr:CPR_1098 dihydropteroate synthase" + /codon_start=1 + /transl_table=11 + /product="dihydropteroate synthase" + /protein_id="ACL75684.1" + /db_xref="InterPro:IPR000489" + /db_xref="InterPro:IPR006390" + /translation="MKVEFLKIGNSIWKWGKKTYVMGILNITPDSFSDGGSYTNPEIA + LNQALRMIEEGADIIDVGGETTKPGAVPVSSEIEQQRIIPVIEALSKEIALPVSVDTY + RADTAELAIQAGAAMINDIWGLKYDSRMASIIAEYNVSVCIMHNRTTGTDYGKDLIGT + ILKELEGSILIAKNAGIGDDKIIIDPGIGFAKTWEQNLEVMHSLEDFKRLGYPVLLGT + SRKSFIGKVLGLEVPDRLEGTLATTAAGISKGVDIVRVHDVLQNVRVAKMTDSMVR" + gene 1631191..1631565 + /locus_tag="Ccel_1331" + CDS 1631191..1631565 + /locus_tag="Ccel_1331" + /inference="protein motif:TFAM:TIGR00525" + /note="TIGRFAM: dihydroneopterin aldolase; + KEGG: cac:CAC2927 dihydroneopterin aldolase fused to + 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase" + /codon_start=1 + /transl_table=11 + /product="dihydroneopterin aldolase" + /protein_id="ACL75685.1" + /db_xref="InterPro:IPR006156" + /db_xref="InterPro:IPR006157" + /translation="MDKIIIEDLELYAYHGVAEEEKKLGQMFLISLEISADLSTAARN + HDLSSTLNYAEVCRVVQEVVQSDKYDLIETVAYKIMEGIFINFHKAVSVKIKLKKPWA + PMGYHLRYAGVEFERTRGDFNV" + gene 1631558..1632031 + /locus_tag="Ccel_1332" + CDS 1631558..1632031 + /locus_tag="Ccel_1332" + /inference="protein motif:TFAM:TIGR01498" + /note="TIGRFAM: + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine + pyrophosphokinase; + PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase + HPPK; + KEGG: cno:NT01CX_0374 bifunctional folate synthesis + protein" + /codon_start=1 + /transl_table=11 + /product="2-amino-4-hydroxy-6- + hydroxymethyldihydropteridine pyrophosphokinase" + /protein_id="ACL75686.1" + /db_xref="InterPro:IPR000550" + /translation="MCNSEVTAYIGLGSNIGDRKFQLNRAVELLKGAEKVEVTAVSSY + YNTAPVGYEQQPDFLNAVVEIRTALSAYGLLQLCSEIEKELKRERIIRWGPRTIDLDI + LLFGNEIIYKKDLVIPHPRMHERRFVLEPLNEIAPEVLHPVFNKYIREIFHSSFM" + gene 1632049..1632582 + /locus_tag="Ccel_1333" + CDS 1632049..1632582 + /locus_tag="Ccel_1333" + /inference="protein motif:PFAM:PF02572" + /note="PFAM: ATP:corrinoid adenosyltransferase + BtuR/CobO/CobP; + KEGG: tte:TTE0370 ATP:corrinoid adenosyltransferase" + /codon_start=1 + /transl_table=11 + /product="ATP:corrinoid adenosyltransferase + BtuR/CobO/CobP" + /protein_id="ACL75687.1" + /db_xref="InterPro:IPR003724" + /translation="MGRKGLVHIYTGDGKGKTTAAIGLGVRACGDNMKVLMVQFLKSR + DTCELHSLKKLEPEFTVLRGFSCKKFVWNMTEEEMEEARKEATEIFLNVKNLVLQNKY + DLVILDELIGVLTNGFIKEDDVIAMIKDKPQETELVLTGRNAGKRLIEAADYVSDIKA + VKHPYQEGISARKGIEF" + gene complement(1632591..1634036) + /locus_tag="Ccel_1334" + CDS complement(1632591..1634036) + /locus_tag="Ccel_1334" + /inference="protein motif:TFAM:TIGR02095" + /note="TIGRFAM: glycogen/starch synthase, ADP-glucose + type; + PFAM: glycosyl transferase group 1; Starch synthase + catalytic domain protein; + KEGG: cth:Cthe_0282 glycogen/starch synthases, ADP-glucose + type" + /codon_start=1 + /transl_table=11 + /product="glycogen/starch synthase, ADP-glucose type" + /protein_id="ACL75688.1" + /db_xref="InterPro:IPR001296" + /db_xref="InterPro:IPR011835" + /db_xref="InterPro:IPR013534" + /translation="MNNINILFASSEVIPFAKTGGLGDVSGSLPKALSKLGCDIRVVM + PKYKVIPEQYKSQMEYLGFIYVDVSWRHQYCGIFRLKFEGLTYYFLDNEYYFNRPELY + GDFDQAEQFTFFSKALLEMLPFVGFKADIIHCNDWQTGVVSLLLKATYKSKHFYKNIK + TVFTIHNLKYQGIFPKEVLPGLLGLDWRYFTSEGLEFNGNVIFLKAGLVYSDSISTVS + PTYSNEIKNDFFGEGLNGVLISRSNDLYGILNGIDYEKNNPENDTRLYAMYSADKISQ + KYENKRRLQQDLGLPVKSEVPIISIISRLTPQKGFDLIERVLEEILQMDIQLIILGKG + DEHYKYIFENAAYWHKDKVSANITFSDILAQRIYAASDMFLMPSLFEPCGLGQIFSFR + YGAVPIVRETGGLNDTVVSYNEATGEGNGFTFTNYNAHDMLNTIRRAVDFYCNKKDIW + NLLVQRGMRTDFSWEKSAHEYINMYRKTLQK" + gene 1634247..1634501 + /locus_tag="Ccel_1335" + CDS 1634247..1634501 + /locus_tag="Ccel_1335" + /inference="similar to AA sequence:KEGG:CPF_1268" + /note="KEGG: cpf:CPF_1268 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75689.1" + /translation="MIFQTRGTCSSQISFEIEEGKLKNVQFSRGCSGNLQGISSLVEG + MPIYEVISKLKGIDCQGRGTSCPDQLAIALESALKKQQAG" + gene 1634607..1634924 + /locus_tag="Ccel_1336" + CDS 1634607..1634924 + /locus_tag="Ccel_1336" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0076 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75690.1" + /translation="MDLKDLLKKNKKKSTKKQTAKNVAIGAGIGTAVGVAAGVLLAPK + SGKETREDIAKVTKDTLENVKDGLNAAKEKIEDMIKKENDCCCCEKETAEECVCTEEE + KAE" + gene 1634958..1635338 + /locus_tag="Ccel_1337" + CDS 1634958..1635338 + /locus_tag="Ccel_1337" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0077 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75691.1" + /translation="MAITINLSVVAWFIIFCIAVTIGVLLIIFLRNCLKISEKVNKIL + DDNANSVEKTLKVLPEAVTSVDELAKSAKGTLDKATSVVTTVEDSVSDTIDSFSFNAE + NILSIINIASSVVKSIISAFSSKK" + gene 1635526..1636950 + /locus_tag="Ccel_1338" + CDS 1635526..1636950 + /locus_tag="Ccel_1338" + /inference="protein motif:PFAM:PF01476" + /note="PFAM: Peptidoglycan-binding LysM; + SMART: protein phosphatase 2C domain protein; + KEGG: cth:Cthe_0635 protein serine/threonine phosphatases" + /codon_start=1 + /transl_table=11 + /product="protein serine/threonine phosphatase" + /protein_id="ACL75692.1" + /db_xref="InterPro:IPR001932" + /db_xref="InterPro:IPR002482" + /translation="MDGNIRLSATVISCMGSSSNKDDFYFNGSFANCHNTQSIQCSFE + KSSSNFVFAVSDSLGIDDGETDSISAVREIKRYHENAKKQRFSLEGITEKIYEAVQLS + SNLIYSKSVISSQNNPILTGFSSLIIENNRAVIMNLGNNGAFLFRHGLQQEIFPNGES + RKNEKLKALGITPNTAELYSDTEKILKIAEQESKTKIKLSSSIIIEEGDIILLCSDGV + LNNLSRSRIEAVIDSGLDPQKMASVLFQEASKNGTDQSVTLMVINVEEVRHISIPIQR + RTEQFDLDEDEDEFLDEPKKGHNVVNYILGFICVLIISGVLFMGYLIVSNKGLFGSDS + KQSDPTQATQTASDTTNVPTVSTDTQSTATDSDSQSVPSKSSDGKNSDTNVDDLDNEN + SSEPPSDNIKNTEPTKPSKPSGTQQETAEYTVHVVQQGETLSSISTKYYGTPSKYNEI + LKYNNMKNANSINIGDELKIPKTK" + gene 1637168..1639324 + /locus_tag="Ccel_1339" + CDS 1637168..1639324 + /locus_tag="Ccel_1339" + /inference="protein motif:PFAM:PF03413" + /note="PFAM: Propeptide PepSY amd peptidase M4; + KEGG: cth:Cthe_2168 peptidase" + /codon_start=1 + /transl_table=11 + /product="Propeptide PepSY amd peptidase M4" + /protein_id="ACL75693.1" + /db_xref="InterPro:IPR005075" + /translation="MKKIISMVLVVAVLAVFMIPAMAADSSTQVDKELEKAIKFVKSK + IDIPKECTKFNYNIYNRNDKTVWSLAWIDENSQKGINVQVDDENFISSYNTYDYATNF + DKKIPKYSKEQILKIAEQFVNKINPKVMDHFKLVDIDTYGYNGGYIINYVREVNGIEY + KSNYITVSVNSYTGKVMSYTCNYSKNIKFEDASKIISLNEAQTAFAEKLGLKLVYNVK + LENEKPVTYLAYVPKTDNKYIDAITGEVETSTNYRFFESGSSSEAQKLALMDAAGTVS + NIALTPDELDAVSNISNLITKDNADKKLRLISNFSLDNSFKLTNAYLGKDWRNSNSLA + WTLTYTKILDESKKQTRDVQITVDAKTGAVIEFWTNYISSVGAVPQKSVEQAKAICDG + TLKALIPDVYAKVKYDDSYIKYNSELKNSYTFRYIRTENGLECPNNYISISYDNLSGN + INSFYTYWAEDLKFADPKNVITVKEANKVLFNKIGYGIQYIPDNQDSAETMIEDYKLG + VLDVEKAVLGYFADSTKPCIISAANGDILDSSGKVYNDNKIEDYTDINGIKAADKVKI + LTQLGIRYTQDELKPSEALLQKDYFVLLCKLNDLFYMDKITDYDKIIENMYSQLISAG + IITKSEKAPLSVITREEAAKYFIKFKGLSQVAEIKGIYKSSFKDANKISPEFLGYVCL + ASGLEAMNGSNGNFMPKNKMTRLEGLMTVYNYLAAR" + gene 1639635..1639922 + /locus_tag="Ccel_1340" + CDS 1639635..1639922 + /locus_tag="Ccel_1340" + /inference="protein motif:PFAM:PF07876" + /note="PFAM: Stress responsive alpha-beta barrel domain + protein; + KEGG: drm:Dred_1344 stress responsive alpha-beta barrel + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Stress responsive alpha-beta barrel domain + protein" + /protein_id="ACL75694.1" + /db_xref="InterPro:IPR013097" + /translation="MFTHIVLFKLKDKSEETIQKTKDLLLGLKGQIPCLKFIEVGINV + IHSERSYDLGLYAKFDSRADMEAYQVHPAHLEVVEYIKLVNESSIAVDYES" + gene 1639950..1641089 + /locus_tag="Ccel_1341" + CDS 1639950..1641089 + /locus_tag="Ccel_1341" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: cth:Cthe_0175 polysaccharide deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL75695.1" + /db_xref="InterPro:IPR002509" + /translation="MKKYIAGALALAITVSVTAGCGVNEYYSGNKTSEVTNSTSAAVT + SAPSQTAVNTQTQGNSAKEADNSQKTEPSVINYNEIKPNEAGQIMVVMFHNFVETYPK + GKNEYTTSFSEFEGLLDELYQKKYRLISLEDMLKNNIDVPAGCIPMVFTFDDGTAGQF + NLIEQDGQLIANPKSAVGIMEKFNKKHPDFGLKGTFYVNLGIETFSGVGTIQDRLGYL + VDKGFEIGNHTKTHVSLPDVKTAAKMLEEVGGNQKLMEEHIPDYKFKAFSLPFGSASK + NLKEYVIQGNYQGTEYRHTSIVLVGANPSPSPVSPKFDPLAVPRVRSTGQDKVECDLA + WWLDTLEKGSSQYISDGNKDTVVVPASKKQNVDTEKLNGKQLITY" + gene 1641383..1641694 + /locus_tag="Ccel_1342" + CDS 1641383..1641694 + /locus_tag="Ccel_1342" + /inference="similar to AA sequence:KEGG:Cthe_0176" + /note="KEGG: cth:Cthe_0176 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75696.1" + /translation="MGQKQVKKIQTDDDVKRKAVKQVVFHIKKKITSEYLGIEYIKEW + LLQIEELLAKEEFDIKEYINARKELNDIIERTLDEQMRFKLRDSWLSMGKALEKKAKI + Y" + gene 1641730..1641912 + /locus_tag="Ccel_1343" + CDS 1641730..1641912 + /locus_tag="Ccel_1343" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75697.1" + /translation="MSKKQCKVTTGKEVDIIDKIKRDIEFEFLKKGIRVSCMNLNLNS + DSISLNILLSSNRRLA" + gene complement(1641991..1643370) + /locus_tag="Ccel_1344" + CDS complement(1641991..1643370) + /locus_tag="Ccel_1344" + /inference="protein motif:TFAM:TIGR00838" + /note="TIGRFAM: argininosuccinate lyase; + PFAM: fumarate lyase; + KEGG: cth:Cthe_0178 argininosuccinate lyase" + /codon_start=1 + /transl_table=11 + /product="argininosuccinate lyase" + /protein_id="ACL75698.1" + /db_xref="InterPro:IPR000362" + /db_xref="InterPro:IPR003031" + /db_xref="InterPro:IPR009049" + /translation="MKLWGGRFAKGTDKLVDDFNSSIRFDSRMYRHDILGSIAHANML + GKCGIISADESSLIQSSLKNILNDIEAGKIDFEIDAEDIHMNVEKILISRIGDTGKKL + HTGRSRNDQVALDIRMYLRDEIISIKEMVAVLLNTLVKMSESNLDTIMPGYTHLQRAQ + PITLAHHMMAYFEMFKRDYQRLCDCYSRMNILPLGSGALAGTTYPLDRYMVAQELGFD + DVTSNSLDGVSDRDFAIELASCLSILMMHLSRLSEEVILWSSHEFSFVELDDAYSTGS + SIMPQKKNPDVAELARGKTGRVYGSLMTLLTVMKSLPLAYNKDMQEDKEAIFDAVDTV + KMCLPVFSNMIGTMKVRKENMYKAAQGGFTNATDIADYLVKKGIPFRTAHEIIGKMVL + YCIENSKAIDDMTMEEFKSFSDKIQEDVYTEISLEKCVSGRKLVGGPARETEEKAIEN + AKSFLSSLD" + gene complement(1643494..1644708) + /locus_tag="Ccel_1345" + CDS complement(1643494..1644708) + /locus_tag="Ccel_1345" + /inference="protein motif:PFAM:PF00764" + /note="PFAM: argininosuccinate synthase; + KEGG: cth:Cthe_0179 argininosuccinate synthase" + /codon_start=1 + /transl_table=11 + /product="argininosuccinate synthase" + /protein_id="ACL75699.1" + /db_xref="InterPro:IPR001518" + /translation="MSKEKVLLAYSGGLDTSIIIPWLKENYGYEVIAMAGDVGQGEEL + EPLNEKAIKTGASKLYIEDLKEEFITDFIYPTLKAGAIYEGKYLLGTSFARPIIAKRM + VEIAIKEGCTAICHGATGKGNDQVRFELTVKALAPHIKIIAPWRIWDIKSREDAIDYA + EARNIPIPVTKKDNYSMDRNLWHLSHEGSDLEDPWNEPQYDKLLKLMVSPEKAPDVPT + YVEIYFEKGVPKKVNGVKYSPIEMMDVLNKLAGENGVGIVDMVENRLVGMKSRGVYET + PAGTVLYAAHRELELLCLDRDTLHYKDIIAQRFAELVYFGQWYTPLRESLSAFVDKTQ + ETVTGTVRMKLYKGNCMPAGAKSEYSLYNEAIATFSEDEVYNQKDAEGFINLFGLPMK + VRAQMLQNKDIK" + gene 1644969..1645469 + /locus_tag="Ccel_1346" + CDS 1644969..1645469 + /locus_tag="Ccel_1346" + /inference="protein motif:TFAM:TIGR00228" + /note="TIGRFAM: crossover junction endodeoxyribonuclease + RuvC; + PFAM: Crossover junction endodeoxyribonuclease RuvC; + KEGG: cth:Cthe_0180 crossover junction + endodeoxyribonuclease RuvC" + /codon_start=1 + /transl_table=11 + /product="crossover junction endodeoxyribonuclease RuvC" + /protein_id="ACL75700.1" + /db_xref="InterPro:IPR002176" + /translation="MIIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDR + LLVLYNELEKLINKFRPDAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEY + TPLQVKQSVVGYGRAEKAQVQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMGAL + LGNDRF" + gene 1645499..1646098 + /locus_tag="Ccel_1347" + CDS 1645499..1646098 + /locus_tag="Ccel_1347" + /inference="protein motif:TFAM:TIGR00084" + /note="KEGG: cth:Cthe_0181 Holliday junction DNA helicase + subunit RuvA; + TIGRFAM: Holliday junction DNA helicase RuvA; + PFAM: RuvA domain protein; DNA recombination protein RuvA + domain I; + SMART: Helix-hairpin-helix DNA-binding class 1" + /codon_start=1 + /transl_table=11 + /product="Holliday junction DNA helicase RuvA" + /protein_id="ACL75701.1" + /db_xref="InterPro:IPR000085" + /db_xref="InterPro:IPR003583" + /db_xref="InterPro:IPR011114" + /db_xref="InterPro:IPR013849" + /translation="MFAYIKGTVEEKNNDSIIVEAGGIGYRIFTALSTINNMGQNGTT + VKIYTHYYVREDIAVLYGFGTVEELTMFEMLLTVSGVGPKAAISMISTLSPSRFYLAV + VSQDTKSLTKAPGIGMKMAQRIILDLKDKISKEQLTSSIPMTSPENNEVTGDSVLSEA + VSALMVLGYGSAEASSTISGIYEKGISVEELVKKALKSL" + gene 1646193..1647200 + /locus_tag="Ccel_1348" + CDS 1646193..1647200 + /locus_tag="Ccel_1348" + /inference="protein motif:TFAM:TIGR00635" + /note="KEGG: cth:Cthe_0182 Holliday junction DNA helicase + B; + TIGRFAM: Holliday junction DNA helicase RuvB; + PFAM: AAA ATPase central domain protein; Holliday junction + DNA helicase RuvB domain; ATPase associated with various + cellular activities AAA_5; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="Holliday junction DNA helicase RuvB" + /protein_id="ACL75702.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR004605" + /db_xref="InterPro:IPR008823" + /db_xref="InterPro:IPR008824" + /db_xref="InterPro:IPR011704" + /translation="MTELTDERLVEAGTRSDDLDEVSLRPKRFGEYIGQAKVKDNLTV + FIEAAKKRKEALDHVLLYGPPGLGKTTLASIISSEMGVNLRITSGPAIEKAGDLAAIL + TNLGTHDVLFIDEIHRLNRSVEEILYPAMEDYALDIIIGKGPSARSIRLDLPKFTLIG + ATTRAGLLTAPLRDRFGVINKLEMYSAEELKEIVRRSAGILNIGLDDEGAYEIARRSR + GTPRIANRLLKRVRDFAQVKGSGTIELELAKHALDALEVDEIGLDGVDRNMLLSIINK + FGGGPVGLDTLAASIGEEAGTIEDVYEPYLIQLGFINKTPRGRMTTKNAYAHFGLEYD + G" + gene 1647322..1647837 + /locus_tag="Ccel_1349" + CDS 1647322..1647837 + /locus_tag="Ccel_1349" + /inference="protein motif:PFAM:PF02677" + /note="PFAM: protein of unknown function DUF208; + KEGG: cth:Cthe_0183 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF208" + /protein_id="ACL75703.1" + /db_xref="InterPro:IPR003828" + /translation="MRVLLHMCCGPCSTYPVQELLEEGVDIQGYFYNPNIHPIEEHKR + RRENVEKFSKIKNIPVIYDDDFRQTEWEGMKGMGGSRCLHCYSVRLESAAKLAVQKGC + DAFTTTLLVSPYQKHDLIKELGEKYAAQYGTTFLYRDFRPGFRQGQQMAKDMELYRQK + YCGCILSLPVK" + gene 1647991..1649580 + /locus_tag="Ccel_1350" + CDS 1647991..1649580 + /locus_tag="Ccel_1350" + /inference="protein motif:PFAM:PF01520" + /note="PFAM: cell wall hydrolase/autolysin; copper amine + oxidase domain protein; + KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase/autolysin" + /protein_id="ACL75704.1" + /db_xref="InterPro:IPR002508" + /db_xref="InterPro:IPR012854" + /translation="MKKKVYFKKIMACILGCLLVFITQYSAFAAQSLTMSYDGKKVVY + SDTIYKVKIDGEEVKTDFPGIIYNKVAMLPVSAVFGKLGGKVVWNSKSQIVDVTYNGS + SLRFKNNDVTAKIDGKSYKLTNQAKNINGRIIIPVDFIKNIKDLSATVDIKTKSINIK + TAKVAPPKNENQNVKPEEPKKPIKETPSDKVKGAPVKQVINSHISYISNQDRIYFTFK + GIALTSTGSEMKKYYTENYDKENCKYTITISAKSKISLAEGTFKIDDDSIDSIVVSRD + KETLDTNIDFNVKKEYTFYTSYNEKLKQTEVNLLIPAKEGEKLVVIDAGHGGVDPGAL + GGSIREKDVNLNIALKLEKLLKAKNINTFMLRQDDTFVSLYDRPYIANNLNATLFLSI + HNNSYDKSSARGTETLYYPEKAGDKSFTGQKFAKLVQDSLMSKLDTFNRKTISRPGLV + VLKYTHMPSSLAEIGFLSNPGDLKKLISQDFQQKTAEALCDAIVQSLEQITKEQEIKE + QEVKEQEIKKQETQEQETTEK" + gene 1649676..1650869 + /locus_tag="Ccel_1351" + CDS 1649676..1650869 + /locus_tag="Ccel_1351" + /inference="similar to AA sequence:KEGG:Cthe_0187" + /note="KEGG: cth:Cthe_0187 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75705.1" + /translation="MKKIISIVLVIMLLSTGCSFIGHKNEQEPSIQAANQTVNASASN + TAQDSKAAASATSTNSNGLAMTSGTTAAPTTTSSMVSGNYTDSQIKDLVIDNGAGKGM + AAASDKSNLLITLYYKNQKGLIIPVTRTVKKQESLAKAAILGLVDEAVTKEQLDYYGL + YPVLPRGTKIKGINIKDKVAVIDFSKEFLNLSGKQEEQEAVASIVYTLTGFSTVSDVR + IRVEGKEITTLENGTDLSIPRNRSNTLINTSDTQIKDGCVKCDLYYVSDDSNNHNYLV + PVSIQIPQTDPRGIPGLIFDELGKKPNETTYFTSMPEGTKLLSFNRQGSTAVLDFSNQ + ITNYGGSEKEDTLLNQIYYTVSQMKGIQKIKLLINGKEKTLPEGTEVASARSVPITFN + KVIEN" + gene 1650991..1651713 + /locus_tag="Ccel_1352" + CDS 1650991..1651713 + /locus_tag="Ccel_1352" + /inference="protein motif:TFAM:TIGR01966" + /note="TIGRFAM: ribonuclease PH; + PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic + domain 2; + KEGG: cth:Cthe_0188 ribonuclease PH" + /codon_start=1 + /transl_table=11 + /product="ribonuclease PH" + /protein_id="ACL75706.1" + /db_xref="InterPro:IPR001247" + /db_xref="InterPro:IPR002381" + /db_xref="InterPro:IPR015847" + /translation="MLRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASV + EERIPPFKKDSGEGWVTAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTI + VDLKLLGERTITIDCDVIQADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTV + AATSVGIVNGEELLDLCYIEDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQL + LNLAESGIHELIKAQNEVLWKD" + gene 1651701..1652294 + /locus_tag="Ccel_1353" + CDS 1651701..1652294 + /locus_tag="Ccel_1353" + /inference="protein motif:TFAM:TIGR00042" + /note="TIGRFAM: non-canonical purine NTP pyrophosphatase, + rdgB/HAM1 family; + PFAM: Ham1 family protein; + KEGG: cth:Cthe_0189 RdgB/HAM1 family non-canonical purine + NTP pyrophosphatase" + /codon_start=1 + /transl_table=11 + /product="non-canonical purine NTP pyrophosphatase, + rdgB/HAM1 family" + /protein_id="ACL75707.1" + /db_xref="InterPro:IPR002637" + /translation="MERLIAATKNKGKINEIKQVLSGLPLDIISMSEAGIDIDVVEDG + ATFEENSLKKALEICKVSKSMVLADDSGLEVDFLGGAPGIYSARFAGPGASDTDKNNK + LLKMLKDVPFEKRTARFVCAIAVAFPHGRHFVVRGTCEGFIDFECKGSNGFGYDPLFF + IQQYNKTMAEIDADLKNQISHRAKALALMQGKLQKYL" + gene 1652338..1652817 + /locus_tag="Ccel_1354" + CDS 1652338..1652817 + /locus_tag="Ccel_1354" + /inference="protein motif:TFAM:TIGR00040" + /note="TIGRFAM: phosphodiesterase, MJ0936 family; + PFAM: metallophosphoesterase; + KEGG: gur:Gura_2286 phosphodiesterase" + /codon_start=1 + /transl_table=11 + /product="phosphodiesterase, MJ0936 family" + /protein_id="ACL75708.1" + /db_xref="InterPro:IPR000979" + /db_xref="InterPro:IPR004843" + /translation="MKVLVMSDTHGYIANARRAIEKNPDVEMVIHLGDYCRDVAELEQ + LYPDKRFEYVYGNSDFGVGETEAEKTLEIEGRRIFLTHGHKYSVKWDLNRIHAKAETE + NAHIALYGHTHIALVERVCDRMVLNPGSISESRSNLSESYAILDISPEKVDAEFFYI" + gene 1652937..1653010 + /locus_tag="Ccel_R0030" + /note="tRNA-Gly1" + tRNA 1652937..1653010 + /locus_tag="Ccel_R0030" + /product="tRNA-Gly" + gene 1653026..1653102 + /locus_tag="Ccel_R0031" + /note="tRNA-Arg1" + tRNA 1653026..1653102 + /locus_tag="Ccel_R0031" + /product="tRNA-Arg" + gene complement(1653139..1653933) + /locus_tag="Ccel_1355" + CDS complement(1653139..1653933) + /locus_tag="Ccel_1355" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fjo:Fjoh_0116 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75709.1" + /translation="MKDQKLWRYYDLIKFLTLINGELYFARADSFKDKYEGAIPKQTF + QSLIEVYKNYGTAKNETDIRLEFQNVFNEKRKKASISCWHINDTESAAMWELYSKAGF + GIAVNTTIDRLTNSLVIPHGYKMVMSEVNYIDFETENDINYIYNELLPFKNKRKEFIY + ENEFRVILYKEKKESETVSGLSDENVLAGEVSRRFHFRLENLPAEGIKVKVDPSEIIL + EILASPHMKKYEVREIQRLLDIINKNNNTNFIMQHSNIYDNLNYSK" + gene complement(1654074..1654562) + /locus_tag="Ccel_1356" + CDS complement(1654074..1654562) + /locus_tag="Ccel_1356" + /inference="similar to AA sequence:KEGG:Cthe_2351" + /note="KEGG: cth:Cthe_2351 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75710.1" + /translation="MKSSHTPYYNIPDYYFDDRQNNNIVNAESFPTGIPTGGPFGSTA + FPIGSTSAGQAIPFMNAPNQPMTQSQNLNQQMNPLSPITPTTEPQPMTTQSTEFMNGF + LRTQIGKTVRVEFLIGTGTLVDKFGRLLAVGANYLVLRQAETDDIIVCDFFTIKFVTF + YL" + gene complement(1654597..1655040) + /locus_tag="Ccel_1357" + CDS complement(1654597..1655040) + /locus_tag="Ccel_1357" + /inference="similar to AA sequence:KEGG:Cthe_2350" + /note="KEGG: cth:Cthe_2350 cell wall hydrolase, SleB" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase, SleB" + /protein_id="ACL75711.1" + /translation="MPLTDRELLARLIRCEAEGEGDDGMKGVASVVMNRVTVPYGEFF + RLVHGDIRAAIFQPRQFTCVMEVVNGQYNPQNIYNMTPLQTHYDIADWAMTGNTLGAI + ANSLWYFNPFKPSCISFFPPGENGTYLTRVKQHCYYIPTQKYAST" + gene complement(1655243..1656004) + /locus_tag="Ccel_1358" + CDS complement(1655243..1656004) + /locus_tag="Ccel_1358" + /inference="protein motif:PFAM:PF01048" + /note="PFAM: purine or other phosphorylase family 1; + KEGG: reu:Reut_A3041 + 5'-methylthioadenosine/S-adenosylhomocysteine + nucleosidase" + /codon_start=1 + /transl_table=11 + /product="purine or other phosphorylase family 1" + /protein_id="ACL75712.1" + /db_xref="InterPro:IPR000845" + /translation="MLIGIIGAMEQEIKLLAESMLINETKIIAMREYYIGKLFGKDVV + LVFSKCGKVAAGSTVTTLIETFNVDVVIFTGVAGGADKNLKIGDIIVADKLVQHDMDA + SSLPGFSKFEIPLLGVGTFIAPPHMVSLGKKSAEFYVSTCLNSDVEESILKEFDIVTP + NIITGTVASGDQFIADSNKVLSLSQEIENLKCIEMEGAAVAQVCYEHGIDYIIFRVIS + DKADEHANINFPRFIEKAASHFTRGIVEHFVSEIG" + gene complement(1656109..1656825) + /locus_tag="Ccel_1359" + CDS complement(1656109..1656825) + /locus_tag="Ccel_1359" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: pth:PTH_0780 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL75713.1" + /db_xref="InterPro:IPR001450" + /translation="MKRKIISIDEEKCNGCGLCVTACHEGALVMENGKAKLISDSYCD + GLGDCLPACPTNAITIEEREAEAYDEELVKKNIAMRAAAQNQTGQHNTHGGCPGSRAM + AIRKAPAKEPAASAVSELMQWPCQIKLVPVNAPYFDNCDLLIAADCTAFAYANIHRDF + MKNRITLIGCPKLDEGDYSEKLTAIIANNNINSVKVVRMEVPCCGGIVNAVKTALINS + GKMLPWSIVTISTNGEVLQS" + gene 1656944..1657651 + /locus_tag="Ccel_1360" + CDS 1656944..1657651 + /locus_tag="Ccel_1360" + /inference="protein motif:PFAM:PF00027" + /note="PFAM: cyclic nucleotide-binding; + SMART: regulatory protein Crp; + KEGG: pth:PTH_0781 cAMP-binding proteins" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, Crp/Fnr family" + /protein_id="ACL75714.1" + /db_xref="InterPro:IPR000595" + /db_xref="InterPro:IPR001808" + /db_xref="InterPro:IPR012318" + /translation="MPGREIQNITEVLLECELFENFNHIQIAAILQCFSPKLYTYSKG + DYIVMSGERYHGMGILVEGNGVVTKENAAGNRIMMNLIKPGSIFGEVIAFSGTEKWPS + NVQAQTNCKVMFIENEMILNQCSDACTHHSQLIRNLLKSVSTRAIMLNRRVEYLSMKG + INSKIASFLLEHMEKAGSKTFRLPVNRNEMAEFLNISRPSMSREMGVMRDMGIIQFQK + EAIKVIDTEKLKNMIKE" + gene 1657744..1658613 + /locus_tag="Ccel_1361" + CDS 1657744..1658613 + /locus_tag="Ccel_1361" + /inference="protein motif:PFAM:PF01145" + /note="PFAM: band 7 protein; + KEGG: ote:Oter_2237 band 7 protein" + /codon_start=1 + /transl_table=11 + /product="band 7 protein" + /protein_id="ACL75715.1" + /db_xref="InterPro:IPR001107" + /translation="MQEVKGKTYSGGLTLLMTMLVLILSVVTFIVGVNMEFAVLVILG + LVLFTGFIFIIPGFFTIQPNQAMVLVLFGKYVGTVKNEGWHWANPFYSKKKISLRSRN + INGDKIKVNDEMGNPIEIAAVIVWRVENTAEAIFDVDNYVDYVNVQSESALRHLAGMY + PYDNTEDTHTISLRGSTDEVAEALKNELQQRLGKAGVIVEEARLSHLAYAPEIAAAML + QRQQAAAIIAARQKIVEGAVGMVQMALTKLSENEIVELDEERKAAMVSNLLVVLCGEK + NTQPVINTGTLHN" + gene 1658630..1658815 + /locus_tag="Ccel_1362" + CDS 1658630..1658815 + /locus_tag="Ccel_1362" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_0565 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75716.1" + /translation="MAEKKTLLLRLSPKLWEEISKWAEDEFRSVNGQIEYIISEALRK + RNKSAHKIVSDSEDAKD" + gene 1658981..1659595 + /locus_tag="Ccel_1363" + CDS 1658981..1659595 + /locus_tag="Ccel_1363" + /inference="protein motif:TFAM:TIGR00482" + /note="TIGRFAM: cytidyltransferase-related domain protein; + nicotinate (nicotinamide) nucleotide adenylyltransferase; + PFAM: cytidylyltransferase; + KEGG: cth:Cthe_1241 nicotinate-nucleotide + adenylyltransferase" + /codon_start=1 + /transl_table=11 + /product="nicotinate (nicotinamide) nucleotide + adenylyltransferase" + /protein_id="ACL75717.1" + /db_xref="InterPro:IPR004820" + /db_xref="InterPro:IPR004821" + /db_xref="InterPro:IPR005248" + /translation="MNKGMKIGICGGTFDPIHLGHLAVAEMVRSEMGLDKILFIPSGK + PPHKDLDSVTDPIHRLKMVQCAVSTNPNFEAVSIEIERRGYTYTVDTLKQLYGLYPGR + TEFYYIIGADVVMDLLKWKRAEEVFTLTKFIALMRPGFRNEEFESNINHLKSRYDADI + TSFQAPLIEISSTFIRDRIKNGKSVKYFITESVEKYIKENKLYI" + gene 1659607..1660179 + /locus_tag="Ccel_1364" + CDS 1659607..1660179 + /locus_tag="Ccel_1364" + /inference="protein motif:TFAM:TIGR00277" + /note="KEGG: ctc:CTC02054 metal dependent + phosphohydrolase; + TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL75718.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR005249" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /translation="MNLIEMDILLKKTLKPGRYIHSVNTMKVAVKLAEHYGEDVEKAK + VAGLLHDCAKNLNDGQTKRYCLENDIALSPLEENQVFLMHGAVGAVLARQKYGVEDPM + VLNAIKYHTTGFAGMNTLDKIIFLADYIEPGRTHCDVQEARSLAFVSLDKALVSAFNC + VIKYVISQNGLIHPFTIEARNSILLMTEKP" + gene 1660201..1660695 + /locus_tag="Ccel_1365" + CDS 1660201..1660695 + /locus_tag="Ccel_1365" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1239 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75719.1" + /translation="MGKLIKFLFYAVGTFLLLFSSIIVGANFYKDSGVFDKKVVEVKK + QPVKPAPTSKAPGKIIVDTKEPAKDTSETTKKSGKITVQVINCTGINGLAGEVKAMLE + AQGFEASAETGNIQSTSQLILRKKGVKVSTISSMLKISQIIENIQAEPKYDITVMLGN + DYNP" + gene 1660730..1661074 + /locus_tag="Ccel_1366" + CDS 1660730..1661074 + /locus_tag="Ccel_1366" + /inference="protein motif:TFAM:TIGR00090" + /note="TIGRFAM: iojap-like protein; + PFAM: Iojap-related protein; + KEGG: cth:Cthe_1238 iojap-like protein" + /codon_start=1 + /transl_table=11 + /product="iojap-like protein" + /protein_id="ACL75720.1" + /db_xref="InterPro:IPR004394" + /translation="MDSKTLVDEIVAAMEDKKAKDISIIDIQNITIIADYFVICSGTS + STHIKAIVDEIDFKLTEVGLEAHHKEGYDSARWILLDYGDVVVHVFHQEERAFYNLER + LWSDGEMTSIRY" + gene 1661231..1662847 + /locus_tag="Ccel_1367" + CDS 1661231..1662847 + /locus_tag="Ccel_1367" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: ctc:CTC00580 ABC transporter ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75721.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MISANGVSLRYGGRALFENVNIKFTQGNCYGLIGANGSGKSTFL + KILSGEIEPNKGDISITPGERMAVLKQDHYAYDEYEVLKTVIMGHKRLVEIMDEKEIL + YAKSDFTEAEGIRLSELEGEFAELNGWEAESDAAMLLNGLNITEEYHHKLMKDLDGNQ + KVRVLLAQALFGNPDILLLDEPTNHLDVASITWLENFLANFENIVIVVSHDRHFLNQV + CTHIADIDFGKIQLYVGNYDFWYQSSQLALQQAKDANKKTEARIKELQEFIQRFSANA + SKSKQATSRKKLLDKLTLEDIRPSSRKYPFVDFKPEREAGNDLLMVNGLSKEIEGEKL + LNDFNLIVNKGDKIAFVGTYGNAKTTLFKVLMGEMEPDSGEFKWGVTTSQAYFPTDNS + KFFDGVDLNLVDWLRQFSNDQTETFLRGWLGRMLFSGEEALKKASVLSGGEKVRCMLS + KMMLSGANVLVLDEPTNHLDLESITSLNNGLINYKGTILFTSHDHEFVQTIANRIIEI + TPKGIIDRQMTYDEYLENEDIAALRKEMWS" + gene 1663063..1663962 + /locus_tag="Ccel_1368" + CDS 1663063..1663962 + /locus_tag="Ccel_1368" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: LOC799651; similar to serine/threonine kinase + 32C" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75722.1" + /translation="MFLSILTKVDSSFDPLAYLNYYEYSYYPDNVFHLDYTQEYYNYF + ADNIFKYETFYFKDKENFLEEFKGILMNNLYATLNVDLYYWNSTGYYYNKIHTSHLAF + VTGFDEEKDVFYAFEDDVNLVYDVREIPINQVIQAYKSPNKQFKGDYRILTFKNDFIP + SYEIDIKQFIKCTKQLIYNLDMLIEKKEVVNKTMIREDSSKVYFYNNEFIKISNRLKG + NKLLLGTLKDKKLLNESLTDELNEVLDDSCMMWKNIQGVYLKNCLRNNFAELDNIEKK + ISAAFMTEKEVWEKVIENLKRSE" + gene complement(1664018..1665736) + /locus_tag="Ccel_1369" + CDS complement(1664018..1665736) + /locus_tag="Ccel_1369" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: cth:Cthe_1232 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL75723.1" + /db_xref="InterPro:IPR000873" + /translation="MRTEPIYQTRKITDLKDLMVQSAKLFGDRNAFYIRGKDGKYYGK + TYTELKNDIDAFGTALINLGLEGKKIAILSQNRAEWCTSYLTITGGVGVVVPLDKELP + FNEVENLISRAGVSAIIFSSKYRSNMIKLSKTSEVEYYIDIDQEEETLDGFLSYSCLI + ERGRELVKQGDRRYLDVEIDADAMCALIFTSGTTDLAKGVMLSSKNIVSNVRAVVSML + YIDETDSVLSILPLHHTYECTAGFLVMMYSGCCMSFNEGLKYIVQNLQETKPSILMLV + PLILENMHKKIVKQASKTRLGKLKFNTAIELSNLLYNFLKIDIRKKLFKQVLNTFGGR + VRLVISGAAAVNPDVSNDLCAMGIRIVQGYGLTEFSPIVAVNNDHGFRHDSAGKPLAG + VDVQLENVGEDGIGEFVISGDSVMLGYYENPSATRNVLKNGRLYTGDLGYIDDDGYIY + ITGRKKNVIVTKNGKNIFPEEVEAYLAKSMFVMESLVWGRFNEDTGETEVNAQILPDI + DEIKAKLCLNNVSNDEIRKILHAEIKEINKQMPLYKRIKDFTIREEEFAKTTTKKIKR + YVENVG" + gene complement(1665878..1667200) + /locus_tag="Ccel_1370" + CDS complement(1665878..1667200) + /locus_tag="Ccel_1370" + /inference="protein motif:PFAM:PF00768" + /note="PFAM: peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1; Penicillin-binding protein 5 domain + protein; + KEGG: cth:Cthe_1231 serine-type D-Ala-D-Ala + carboxypeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1" + /protein_id="ACL75724.1" + /db_xref="InterPro:IPR001967" + /db_xref="InterPro:IPR012907" + /translation="MKKVLATLIISLTILLQVSPAFSANLDIDAASYILMDAKTGSVL + YEHKPDLKWRPASTTKIATALVALKEGNMDQVMTASNEAVTDIGVGGMNIGIMPGEQM + SLNDLLHALLIVSANETANIISENLYNDKSKFLEEMNKVSAEVGAKNTTFTNPSGIDE + YEKDANHFSSARDLALIAKECLKYPVFREIVEQKQLNMLPPTNKHKTWNVLNTTNKLL + GQSFKYGPETGDDRNQFTITGLKTGSTLRAGANFISSAVNKDGLELISVVLGVNNKPN + RSVFDFTKTLLTAGYENYSRQMIIDRSTKIQEITVKDAANGDKVALITNGEIEALLPK + DKNEWRLNKKINITQDIKAPVKKGTVLGNIEYTRDGILLGKVDIVSSRTVEQTLTSKT + KGYLYDIMNNNIFKFAVIGIIVIVCFLITRMILRKISRKRKYKLRNFN" + gene 1667482..1668243 + /locus_tag="Ccel_1371" + CDS 1667482..1668243 + /locus_tag="Ccel_1371" + /inference="protein motif:TFAM:TIGR00426" + /note="KEGG: cth:Cthe_1230 helix-hairpin-helix + repeat-containing competence protein ComEA; + TIGRFAM: competence protein ComEA helix-hairpin-helix + repeat protein; + PFAM: helix-hairpin-helix motif; Competence protein ComEA + helix-hairpin-helix region; + SMART: Helix-hairpin-helix DNA-binding class 1" + /codon_start=1 + /transl_table=11 + /product="competence protein ComEA helix-hairpin-helix + repeat protein" + /protein_id="ACL75725.1" + /db_xref="InterPro:IPR000445" + /db_xref="InterPro:IPR003583" + /db_xref="InterPro:IPR004509" + /translation="MEISVFGKKIFINKIPAICIIVGLLFGAGMLGFFLKQVYHPLEA + TIIEENTAISPKETEPAGEQVGEQTEEEKVPDIQIYVTGCVKNPGVVTIKKGQIIEDA + IKNAGGATKEADLENINLAYPLTENTMLRIKAKGTAKVSNTGKTDKSAQTGKVTGEKP + LKSGVDIINDSSGTDMGEKENKTADSSKTKLVNINKASQAELEELPNVGPSTAKAIIE + YREQKGGFTKLTDIMKITGIKQKTFDKIKSYICID" + gene 1669008..1670915 + /locus_tag="Ccel_1372" + CDS 1669008..1670915 + /locus_tag="Ccel_1372" + /inference="protein motif:TFAM:TIGR00418" + /note="TIGRFAM: threonyl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); TGS domain + protein; Anticodon-binding domain protein; Threonyl/alanyl + tRNA synthetase SAD; + KEGG: cth:Cthe_1228 threonyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="threonyl-tRNA synthetase" + /protein_id="ACL75726.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR002320" + /db_xref="InterPro:IPR004095" + /db_xref="InterPro:IPR004154" + /db_xref="InterPro:IPR006195" + /db_xref="InterPro:IPR012947" + /translation="MISITLKDGTVKEYQKGVTVLEVAESISAGLARVSLVGEVDGKV + TELDFKLERDCSLNLLTFEDEGGRLAYRHTASHVLAQAVKRLYPDAKLAIGPAIDTGF + YYDFEREKPFSIEELDSIEKEMEKIVKEDLKLERFVLPRNEAIKLMEEKGEPYKAELI + MDLPQGEEISFYKQGEFTDLCAGPHLTGTGRLKAVKLLSVAGAYWRGNEKNKMLQRIY + GTAFPKKSQLDEYLFRIEEAKKRDHRKLGRELDLFDILDEGPGFPFFMPKGMVLRNLL + EDYWRSEHKKAGYQEIKTPVILNKELWLRSGHWDNYKNNMYTVAIDEQDCAIKPMNCP + GGILVFKRKLHSYRDLPQRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMTPEQI + TDEVTGVINLIDDFYSVFGFKYNVELSTRPEKSIGSDEMWELSTAGLKKALDEKGIKY + TINKGDGAFYGPKIDFHLEDSIGRTWQCGTIQLDMNLPERFDLSYIGPDGEKHRPVMV + HRVVFGSIERFIAILTEHFAGAFPTWLSPVQVKILPLVDKHYDYAYEVKKLLEADDIR + VEVDTRNEKIGYKIREAQMDKTPYMLVIGDKELEGRLVSVRSRKDGDLGTITPEQFAE + KISNEIKNKLR" + gene 1670929..1672866 + /locus_tag="Ccel_1373" + CDS 1670929..1672866 + /locus_tag="Ccel_1373" + /inference="protein motif:TFAM:TIGR00418" + /note="TIGRFAM: threonyl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); TGS domain + protein; Anticodon-binding domain protein; Threonyl/alanyl + tRNA synthetase SAD; + KEGG: cpr:CPR_2317 threonyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="threonyl-tRNA synthetase" + /protein_id="ACL75727.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR002320" + /db_xref="InterPro:IPR004095" + /db_xref="InterPro:IPR004154" + /db_xref="InterPro:IPR006195" + /db_xref="InterPro:IPR012947" + /translation="MIKITLKDGSNKEYQSGITIKEVAESISAGLARAALAGEVDGKV + KELDFKLNNDCSLSLLTFADEGGRLAYRHTASHVLAQAVKRMFPNVKLAIGPAIENGF + YYDFDTDKNFAPEDLAKIEKEMEKIIKEDISLERFTLPRDEAIKFMEEKGEPYKIELI + KELPEGEEISFYKQGDFVDLCAGPHLLSTGKLKAVKLMSAAGAYWRGNEKNKMLQRIY + GTAFPKKSELEEYVTKLEEAKKRDHNKLGRELELFTTVEEIGQGLPLLMPKGARIVQT + LQRFVEDEEERRGYVLTKTPLMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRP + MTCPFQFMIYNTKLHSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGHLVCT + PEQLEDEFKGVVDLIKFMMETLGIQDDVTYRFSKWDPKNKEKYIGNEEDWENVQDQMR + TILDHLKIDYKEAEGEAAFYGPKLDIQCKNVHGKEDTIITVQVDFALAERLNMVYVDK + NNEKKHPYIIHRTSIGCYERTLAILIEKYAGAFPTWLCPVQAKILPLVDKHHDFAQKV + AQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMENNAVSVRSRKDGDL + GAMPAEQFVDRIVEEIRTRAK" + gene 1672973..1673401 + /locus_tag="Ccel_1374" + CDS 1672973..1673401 + /locus_tag="Ccel_1374" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cts:Ctha_0982 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75728.1" + /translation="MNDSNYHNVIREMIKEETSIVNNRMNWLILLEGLLFAGYTSLST + RGFSLYIIGILGFIVSLCMRYSILSSEKAISFIMDNWNIYLRKNNMKYMDFPPVWAGA + NLQTTRFQAIMTAHRFIPFVFMIAWVCLIINTLLLNLGVF" + gene complement(1673504..1674103) + /locus_tag="Ccel_1375" + CDS complement(1673504..1674103) + /locus_tag="Ccel_1375" + /inference="similar to AA sequence:KEGG:Cthe_1210" + /note="KEGG: cth:Cthe_1210 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75729.1" + /translation="MLLPYIRYPFVSQQPDLIQEQPYYPVQPQYEAYGYTDFYPVTRQ + PGDPPPVLSNNPATTSIVLFKQLTGYPNYGNPSRNADILYTGNRGTWTFDSPAFLIVP + GNQRAQIVIRSVLDDHSAVPVNRYSARITINGSVVHTGPVPLQHGVPAGGMFDNWRDL + TFNVPNLRRNNRVTIENTSTAGPSDWIAFDWMELRLSPR" + gene 1674323..1676107 + /locus_tag="Ccel_1376" + CDS 1674323..1676107 + /locus_tag="Ccel_1376" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; copper amine oxidase + domain protein; + KEGG: lsp:Bsph_1041 putative S-layer + protein/N-acetylmuramoyl-L-alanine amidase" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL75730.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR012854" + /translation="MHKKIAGKLLKTVFAVFIAGSMVLGSATVQAAGVSDLSKSSVYA + SEAIQWMANNSIISGDNQGNFNPRQSITRAELITLLVKALDIDTENLPSTATFSDVPV + SHWAFKYVEAANRAGITSGTGSGKFGINSLTTREQVTTMLLNYLCVSKEAIVAEQGLD + DLLKFKDAGKMSDWAKASIKFAVSNNIMSGVSADSFSPSGKATKEQIAVILYKFVNSK + ESIEQNAAALKKVIVTYNDDLIKLQTPCKVIENDIMIPAEVFSKTGAKVDFDSQAGII + AIKSSTAQDKNIYMSIDNKSAYVNYTGSGNPISDPPAQDKLVTLNNAPEQISGVVLVP + AKAVVDALGITMDWNDKINVLKIKDSTIPKNPQLYNAMKSMLDYKGEYSSDLIINMKE + DTLDMNFGMHMSINGAINGNNSTSNAKFTLTLDGEQEDLMDYQTINIGDNIYVKNPET + DLWDTYNRSEAEEEGILYTDFESDRNEMLRLLDVYGKMNISNEGKTILNGEEVSKYQV + RLNIELLQGLLSADMLEYGLGLKDIYNNGLDTRMFIYVNSKGQLVKQSVIIAGATEFD + GSTTDIDMTVSSMYTNIGKEIEIVSPIK" + gene 1676199..1676777 + /locus_tag="Ccel_1377" + CDS 1676199..1676777 + /locus_tag="Ccel_1377" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75731.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene 1676819..1677619 + /locus_tag="Ccel_1378" + CDS 1676819..1677619 + /locus_tag="Ccel_1378" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75732.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(1677729..1677944) + /locus_tag="Ccel_1379" + CDS complement(1677729..1677944) + /locus_tag="Ccel_1379" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75733.1" + /translation="MQNRKQQDSISVNDINQENDIRKVPQKSTGNAGKDPFCVYDHKR + HAVGSRITTENGLQSVCTEEGSWKTSK" + gene 1678143..1678394 + /locus_tag="Ccel_1380" + CDS 1678143..1678394 + /locus_tag="Ccel_1380" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: drm:Dred_3020 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75734.1" + /translation="MLDSRKCLEIYEFCQNQYKKLEKKTGFYSPKHDKVVMELAAKEF + QMSEAIINNAFDLAAQTLSKNSKSKSEKIIRNKLIHGTF" + gene 1678611..1679285 + /locus_tag="Ccel_1381" + CDS 1678611..1679285 + /locus_tag="Ccel_1381" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_1044 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75735.1" + /translation="MYHFYLGVFLVGVFYTIISLIISGISGAFHTNGDFGGTHMHGHG + ADGGHIPGGHVDVDTGGVHGSHSLDGSHGGDVPDASNSFFSWVGIIFNPLVAVSFLTV + FGGIGITGTKFFSWSWVIVLVIALGSGILISALLYNLVAKPLYRSENTSDVSRESLLG + VQAEVTTDILENGFGTIKYTVNSIRYTAPAKHIDNKSVKQGEKVFICKIESNIFYISE + LSEALI" + gene 1679369..1680796 + /locus_tag="Ccel_1382" + CDS 1679369..1680796 + /locus_tag="Ccel_1382" + /inference="protein motif:PFAM:PF01145" + /note="PFAM: band 7 protein; + KEGG: aoe:Clos_1045 band 7 protein" + /codon_start=1 + /transl_table=11 + /product="band 7 protein" + /protein_id="ACL75736.1" + /db_xref="InterPro:IPR001107" + /translation="MVDSVYFVPAVIIVVLFILILSFVSMYKKVPQDKALVVTGFRGR + RVITGGGGIVIPMLERTDIISLENMQIDIRIDGALTSQGVGIVADGVAVVKVKSDKES + ILSAAEQFNTSKGLDYMLGIIARTTQQVLEGKLREIVSRMTVEEIYKDRETFASHVQG + VAATELQNMGLELKVLTIKDISDKNGYLEALGKPRIAEVKRDAQIAEANATKETKVKT + AEANREGEEARIQAETQIAEANKDKELKVQSYNKDQQTAKAEADLAYDIKANIVKKEV + AETAMQVEIVKKQKEIELAEQEAIRREKELEATVKKQADAENYQATKVADANKYREVA + AAEARSRAIEMEGEAKAKAKRAEGMAEVEIIKAKGEAEALAMAKKAEAFKMYNDAAVT + QMIVEKLPEIANAVASPLSKTEKIVIVDNGGEGKGASKVTGYVTDIISQLPETVEALT + GLNVLDFLKKNTVQTQNENDAEDVE" + gene 1681104..1682819 + /locus_tag="Ccel_1383" + CDS 1681104..1682819 + /locus_tag="Ccel_1383" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cbe:Cbei_2787 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL75737.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MLKNLKIVHKIIFLPAVLLLLILIVGFTGYYYLNNSHLEMERMY + EDRLLPIEWLSDSISKTNENEKNILYLILYSNDERSQTQSIKNIENSSKIIDENWEKY + KKTTLDKFESDNIALFEKRRNEFRTARDKIIAASLAGNKEEALDLLNNNISYLRGEQK + TLEDLSEYCRKVSSDINTKNNRNYMYAIRILISIIAFALVGGFLLSLLIANGIIRPID + KLKEELGILAQAGGDLTKEIDIESKDEVGQLADSVNKFLFNLRNIVNGIIKESTVVEN + SITLVDQKMEELNAFVENVSATTEEISAGMEETAAATEQVNASSQEIESAIEAMNEKA + QKGSLEAEEISNRAITLRDNSVLSQKSSNEIYEETSNKLKIALENSKSVDHINVLSGT + ILQISDQTNLLALNAAIEAARAGEAGKGFAVVADQIRKLAEESKTAVNEIQRVTNEVI + SAVVDLSDGSRTVLNFLDTTVRPDYTNMVKTGESYNNDAEFVFELVSDFSATSQELTA + SVEGIIRAISDVTKTVNEGAAGTQSIAEQNIGIVEMVSKVKKEMEISSRSTHKLKEIV + GKFTV" + gene 1682919..1684475 + /locus_tag="Ccel_1384" + CDS 1682919..1684475 + /locus_tag="Ccel_1384" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: drm:Dred_1812 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75738.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MSILNVENVSHGFGARKILEDASFRLLKGEHVGLVGANGEGKST + FLNIITGKLMPDEGKVEWCNRITTGYLDQHTVLTPGKTIREALREAFQYMFDLEKEML + EIYEKMGNASESEIDSMMEDVGEIQNVLEHNGFYVLDSKIEEVANGLGLGEIGLETDV + TNLSGGQRAKVLLTKLLLQNPMILILDEPTNFLDDNHINWLKNYLKNYENAFILVSHD + IPFLNDVVNVIYHVENAVLTRYTGNYDEFQRMYQLAKQQTQQAYEKQQKEIEKLEDFI + ARNKARVATTNMAKSRQKKLDKMDIIEKVREKVKPIFKFREARSPGRYIIQTENLVIG + YDSALSSPLNISLERGQKVAVKGVNGLGKSTLMKTLLGAQKPFSGRVKIDDYLYPGYF + EQESERYNTNTALEEVWNDYPGMSNAEVRGALAKCGLTTEHITSQMMVLSGGENAKVR + LCKLMLKDVNWLILDEPTNHLDVDAKDELKRALREFKGTVLLVCHEPEFYEDWVTDVW + NVENWTTKIV" + gene 1684686..1686425 + /locus_tag="Ccel_1385" + CDS 1684686..1686425 + /locus_tag="Ccel_1385" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_3300 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75739.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MIKKLLSYVREFKRDSIVTPVYIALEVAMEIAIPLLMGWIIDNG + VEKGNMQYVLTVGAVMVVVSVFALTFGVLAGKYAARASSGFARNLRKAMYDKIQSFSF + SSIDKFSTAGLVTRLTTDITNVQNAYQMALRMFARPPLMMISALVMSFYLNARLALIF + VGAIIFLGLALYFIMTSAHPHFRKVFRKYDDLNASVQENLTGIRAVKAYVREGYETNK + FYKASKSIYDNFIKAEKIIIFNSPIMQFTMNASILLLSWLGAKLIVASSMSTGELMSF + FTYTTNILMSLMMLSMVLLMTIIARSSADRIVEVLDEKSDLSNCDKPIYEVRDGSISF + SDVNFSYSKKVDNLILKNINIEIKSGETIGIIGGTGSGKTTLVQLIPRLYDITQGSIK + VGGIDVREYDIETLRNEVSMVLQKNVLFSGTIKENLRWGNKDATDEELIAACKQAQAD + EFIQNFPEKYDTYIEQGGTNVSGGQKQRLCIARALLKKPKILILDDSTSAVDTKTDAL + IRKAFKESIPDTTKIVIAQRISSVQEADKIIVLNDGKIDGIGTHEELLNSNDIYTEVY + ESQVKGADSDGER" + gene 1686412..1688301 + /locus_tag="Ccel_1386" + CDS 1686412..1688301 + /locus_tag="Ccel_1386" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_3299 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75740.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MGKGSPKGRGIENPIKVLTRLLSYILKEYKILFAIVVICIIISS + LSNVAGTLFLRNLIDDYITPLLNETVADFGPLLKAILTIASIYLVGVLTNYVFNRIMI + VISQGSLKKIRDDMFAHMETLPISYFDTHSHGELMSLYTNDTDSLRQMISQSIPQMLS + SVITIVSVFFSMIFLSIPLTIVQMLSMAVMLLIIKVIGGKSGMYFGLQQRDIGKINGF + IEEMMEGQKVVKVFCHEDEAKIKFDKLNDSLFDSANNANKFANILMPILGNIGYITYV + LISIIGAILAISGFGGFTVGALAAFLQLTRGFSQTTGQASQQFNFIVMALAGAERIFK + LLDEKPETDEGYVSLVNVKENEKGELSESVERTGIWAWKHPHKDGTVTYTELLGEVVF + DDVDFGYREDKIILHNISLYAKPGQKVAFVGATGAGKTTITNLINRFYDIQDGKIRYD + SININKIKKNDLRSSLGIVLQEAHLFTGTVADNIRYGKLNATNEEVIAAAKLANAHQF + IKHLPDGYETIITGDGGNLSQGQRQLLTIARAAIADPPVLILDEATSSIDTRTEAIVQ + EGMDRLMKGRTVFVIAHRLSTVKNSDVIMVLEQGQIIERGSHNDLIEQRGKYYQLYTG + AFELS" + gene complement(1688365..1688916) + /locus_tag="Ccel_1387" + CDS complement(1688365..1688916) + /locus_tag="Ccel_1387" + /inference="similar to AA sequence:KEGG:Bsph_2991" + /note="KEGG: lsp:Bsph_2991 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75741.1" + /translation="MNLAFMENEKQPKKVIVLSDAVYHSYLGKYFLGQTDLITFGGSY + NGWGALINPENSNVNMFLNAYTISNFASVPLTAEGWLSSVLPGKPKLSPYFAAGNQSI + TPSPMPKVKIKNASMVSPTPTSGTYTFVRRVEPNETLTKHDFQGMYIIPPGSSFALFF + LSPGKEQIQTRVAFGWWEEKVNI" + gene complement(1688948..1689487) + /locus_tag="Ccel_1388" + CDS complement(1688948..1689487) + /locus_tag="Ccel_1388" + /inference="similar to AA sequence:KEGG:Bsph_2991" + /note="KEGG: lsp:Bsph_2991 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75742.1" + /translation="MFEKRTKQPIEVVDITSPTMNSMLGRYFIGQTNILNFGNKYDAW + GGIINPNDSGVNLYIDLFTISNFSSQNFTAEIWLNANTPIKATVSSTVTPSNQAMSPP + PRPKAIMEYADFLTEPLMKGVNIFGRIVARNSTLVSDSHNGSIIIGPGGSFSILMKSP + GQQSISGTIVLTWWEEKIQ" + gene 1689777..1691573 + /locus_tag="Ccel_1389" + CDS 1689777..1691573 + /locus_tag="Ccel_1389" + /inference="protein motif:TFAM:TIGR03336" + /note="TIGRFAM: indolepyruvate ferredoxin oxidoreductase, + alpha subunit; + PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; pyruvate flavodoxin/ferredoxin oxidoreductase + domain protein; thiamine pyrophosphate protein domain + protein TPP-binding; + KEGG: mba:Mbar_A2988 indolepyruvate ferredoxin + oxidoreductase, subunit alpha" + /codon_start=1 + /transl_table=11 + /product="indolepyruvate ferredoxin oxidoreductase, alpha + subunit" + /protein_id="ACL75743.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR002880" + /db_xref="InterPro:IPR011766" + /db_xref="InterPro:IPR017721" + /db_xref="InterPro:IPR017900" + /translation="MSKKLLMGNEAIALGAIRAGVNVVTGYPGTPSTEVLETVARNNP + GDIYVEWSVNEKSAMEVAAGAAYSGARTMVTMKQVGLNVASDPLMTLAYIGVKGGMVV + LVADDPGPFSSQTEQDTRHFARYSNLPVLDPSSPEEAYEMIQYAFELSEMVELPVFLR + PTTRICHSCATIDVDEKRLDHKIEGFVKDSRWVIFPSLAYKKHIHIEKLQHKLSDIFS + GIRFNKVEGKDGKLGVVASGAAYSYVVEALEKLNTNNVKIFKVGTPYPFPKEMASGFL + DGLEEVLVFEELDPVVEEEIAMLCASKQQNIRILGKKTGHLPFAGEYTFELVYEALAK + YLKMEKENIEKTVSPELPVRQPVLCAGCPHRASFYAVKMAMKGQKAVFTGDIGCYTLG + NAKPLDMVDTCLCMGAGVTVAQGIKRAQPDTKHIAFIGDSTFFHTGMPGIVNAVYNNT + DITVVLLDNSTTAMTGHQPHPGTGKTMMNSISEKIDIFGVVKACGVGHIEKGNPLDFS + NAVEVIKKAVEYKGPSVVIFEAPCIALFKPTVEYSIKANCKDCKKCITEIGCPAISVI + EGKVRIEPSLCYGCGLCTNVCPFDAIGGEENE" + gene 1691566..1692177 + /locus_tag="Ccel_1390" + CDS 1691566..1692177 + /locus_tag="Ccel_1390" + /inference="protein motif:PFAM:PF01558" + /note="PFAM: pyruvate ferredoxin/flavodoxin + oxidoreductase; + KEGG: mbu:Mbur_0761 indolepyruvate oxidoreductase subunit + B" + /codon_start=1 + /transl_table=11 + /product="pyruvate ferredoxin/flavodoxin oxidoreductase" + /protein_id="ACL75744.1" + /db_xref="InterPro:IPR002869" + /translation="MSKQGFDILISGVGGQGTVLASRLIAAAAINQGCFARTAETIGM + SQRGGCVVSHVRIDSEKSGSIIPLGGADMIIAFELAEAARSIPRLSRKGCCIVNTQVI + KPVSASLGSTNYDIDEINQYIKDNSAEVYFVDGYSLAEKAGNVKAVNVVLLGAATAVS + KMPFTKEIMLNTIIENVPQKFRELNQKAFEMGYEAAKQLIKKV" + gene 1692231..1692692 + /locus_tag="Ccel_1391" + CDS 1692231..1692692 + /locus_tag="Ccel_1391" + /inference="protein motif:TFAM:TIGR00160" + /note="TIGRFAM: methylglyoxal synthase; + PFAM: MGS domain protein; + KEGG: cac:CAC1604 methylglyoxal synthase" + /codon_start=1 + /transl_table=11 + /product="methylglyoxal synthase" + /protein_id="ACL75745.1" + /db_xref="InterPro:IPR004363" + /db_xref="InterPro:IPR011607" + /translation="MSGNKLGRQKHIALIAHDNRKEDLINWVKSKSDILCRHFLCGTG + TTAKMITENTGLPVKKFKSGPLGGDQQIGACIANGEVDFMIFFWDTLTSQPHDPDVKA + LLRIAVLYDIPVAMNRSTADFLLTSSLMEDDYERNVVDYYSRIRKEHFGGI" + gene 1692770..1694011 + /locus_tag="Ccel_1392" + CDS 1692770..1694011 + /locus_tag="Ccel_1392" + /inference="similar to AA sequence:KEGG:MMP0314" + /note="KEGG: mmp:MMP0314 coenzyme F390 synthetase" + /codon_start=1 + /transl_table=11 + /product="coenzyme F390 synthetase" + /protein_id="ACL75746.1" + /translation="MRIDQFQLLKKLLENISQNSPFYREKFQKNSVDIDDIKSLEQIK + NLPFTVKEELRDAYPLGLQAVSDEQVVRIHSSSGTTGKPVIIPYTAQDVADWAEMMSR + SFSIAGITSLDRVQITPGYGLWTAGIGFQAGAERLGAMAVPMGPGNTDKQLQMMVDLK + STVIIGTSSYALVLAEEVEKRGLRSDIHLRKGIIGSERWGEKMRQRIKNELNIDIYDI + YGLTEIYGPGIAIDCPSHDGMHYYDDYLYFEIIDPVTEEVLPVGEVGELVITTLRKEG + APLLRYRTRDLTRIIPGKCKCGMEYPRIDRIIGRTDDMVKVKGVNIYPGQIDEILKDV + DGASSEYQIVIDHLNGKDVMTLKVEYNSDGDTEREEIETNIVDLFKKRIGIHIIAEAS + RIGSLPRSEKKSRRIIDYRHN" + gene 1694178..1694435 + /locus_tag="Ccel_1393" + CDS 1694178..1694435 + /locus_tag="Ccel_1393" + /inference="similar to AA sequence:KEGG:BH2390" + /note="KEGG: bha:BH2390 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75747.1" + /translation="MHPDSETSEWDKWKSSLGKVVNTAEAAGMSERAVDNIAYRVGNV + LNAVADPNNVHQLVLKELWKVGDDEEKKTLANLIVKLVKSD" + gene 1694521..1695114 + /locus_tag="Ccel_1394" + CDS 1694521..1695114 + /locus_tag="Ccel_1394" + /inference="protein motif:PFAM:PF04205" + /note="PFAM: FMN-binding domain protein; + KEGG: cbt:CLH_3155 putative lipoprotein" + /codon_start=1 + /transl_table=11 + /product="FMN-binding domain protein" + /protein_id="ACL75748.1" + /db_xref="InterPro:IPR007329" + /translation="MKKIFALGITLVLVLSMAACNKANTPGPSTTSPSPTLRTPTTTS + PSTTTPSPTLKTPTTTSPAKSSPSPSKKSPSASTSTPSKSAMAGSYKDGTYSGKGDPW + ENGQEEARVTVKDGKITDVSLKRLTKDGKSEVDYSLFDGKVHNGKQYPNLKEFKVSME + KKMVEKQSAKVDTIASATTTTKNWTIAAQRALDQAKK" + gene 1695431..1695955 + /locus_tag="Ccel_1395" + CDS 1695431..1695955 + /locus_tag="Ccel_1395" + /inference="similar to AA sequence:KEGG:CTC01689" + /note="KEGG: ctc:CTC01689 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75749.1" + /translation="MHSNVKKIVLASLFIAIEIIATRFLSIQTPIIRISLDFIPVALS + AIILGPYTSGVAAAIADIFGMLLFSKGVAYFPGFTLSSFVSGFLYGIILHKKKITLKR + CFFAVVTVMIIISLGLNTIWLLIITNNGAFAILSARIVKDMTMLPIQTFLIYYVWRAI + ESTVKSTSTFYKTF" + gene 1696003..1696905 + /locus_tag="Ccel_1396" + CDS 1696003..1696905 + /locus_tag="Ccel_1396" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ote:Oter_1909 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75750.1" + /translation="MNKKFISSIAIISIVSMLFLTAGCGVRINGKDYTIFEANHQEDK + KNDTVREETGGDMESEVAEGIDKIAEEIGEGEVLNIDNSAGNITIKESDDSKLVVEIQ + KKINGLPSEQIKDAFRSMNLCLEREGKDLNVVLKTKDGNDFWDWNKLKLGLFKGSVNF + TVLVPKGIKEINTNTGAGNIDIKRISSQISASTGAGNIDLDDISAYGETVLETGTGNV + DFNGDIDKVTSFKASTGVGNVSLEVPEETKMSLNAETGLGHLSGFFISSDDKVKKSFN + EDINGGGPEVKLTTGVGNTEVDKR" + gene complement(1696962..1697585) + /locus_tag="Ccel_1397" + CDS complement(1696962..1697585) + /locus_tag="Ccel_1397" + /inference="similar to AA sequence:KEGG:Cthe_0657" + /note="KEGG: cth:Cthe_0657 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75751.1" + /translation="MKLRITDKDLAELTLEQKQNLCDLWIPQAYDVAVANVCVDAAEE + KYKQITFIIGGLNLTKHNDIVLYDMKFLPDNLFTLTSENDSDRDTYPAYPENPRETED + SVEDSEDTLNDDFSEDFSIDEDFSFELQRPESFNKQDCLPLLDIGQMIDILERKNFGD + CEFLLSVAFDDKIFDLGNNNSLPEMYSNENNKCELCDILWLSLKAVL" + gene 1697815..1699797 + /locus_tag="Ccel_1398" + CDS 1697815..1699797 + /locus_tag="Ccel_1398" + /inference="protein motif:PFAM:PF00986" + /note="PFAM: DNA gyrase subunit B domain protein; TOPRIM + domain protein; DNA topoisomerase type IIA subunit B + region 2 domain protein; + SMART: DNA topoisomerase II; + KEGG: cth:Cthe_0305 DNA topoisomerase (ATP-hydrolyzing)" + /codon_start=1 + /transl_table=11 + /product="DNA gyrase subunit B domain protein" + /protein_id="ACL75752.1" + /db_xref="InterPro:IPR000565" + /db_xref="InterPro:IPR001241" + /db_xref="InterPro:IPR002288" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR013506" + /translation="MTKKDRKNEYGNESISSLKGADRVRLRPGVIFGSDGLDGCEHSF + FEILSNSIDEAREGHGNIIEITRFADNSIMVQDWGRGLPVDYNSKEERFNWELVYCEL + YAGGKYQNNSGENYEYSLGLNGLGACATQYSSEYFDVTVFRDGYRYDLHFEKGENIGG + LKKEKCKYDRTSTIQKWRPDIDVFTDIDIPLEYYQTVLKKQAVVNAGLKFILKDEESG + ETYIYMYENGIVDYIKEITKDTGFTEVQFYEGSARGRDRADKPEYKVKMQIAFCFNNH + TNLLEYYHNSSFLEYGGAPDKAVKNAMIYEIDKSIKARGKYNKDESKITFADIEDSLI + LVVNSFSTITSYENQTKKSITNKFIQETMTDFLKQQLEIYFIENKIESDKIIEQILVN + KRSRETAEKTRINIKKKLSGNLDISNRVKKFVDCRTKDISRREIYIVEGDSALGACKL + GRDAEFQAIMPVRGKILNCLKAQYDNIFKNEIIIDLLKVLGCGVEIKSKHNKDLNTFD + LANLRWDKVIICTDADVDGFQIRTLILTMLYRLVPTLLSVGKVFIAESPLFEITCKNK + SYFAYTEKEKAEILAKLEGKKYTIQRSKGLGENEPEMMWETTMNPATRRLIKVMPSDV + EKTTMMFDVLLGDNLAGRKQFIEDNGNKYLDMIDVS" + gene 1699847..1702033 + /locus_tag="Ccel_1399" + CDS 1699847..1702033 + /locus_tag="Ccel_1399" + /inference="protein motif:PFAM:PF00521" + /note="PFAM: DNA gyrase/topoisomerase IV subunit A; DNA + gyrase repeat beta-propeller; + KEGG: cth:Cthe_0306 DNA gyrase/topoisomerase IV, subunit + A" + /codon_start=1 + /transl_table=11 + /product="DNA gyrase/topoisomerase IV subunit A" + /protein_id="ACL75753.1" + /db_xref="InterPro:IPR002205" + /db_xref="InterPro:IPR006691" + /translation="MTHKNLVEQNITETLESNYMPYAMSVIVSRAIPEIDGFKPSHRK + LLYTMYKMSLLTGAKTKSSNIVGQTMKLNPHGDMAIYETMVRMTRGNNALLHPFVDSK + GNFGKQYSRDMKFAAPRYTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTT + FPTILVNSNQGIAVGMASNICSFNLVEICKTTSALIDDENVVLEDYLKAPDFSSGGQL + IYSAKEIRDIYKNGRGGFKVRARYKYDKENNCIEIIEIPYTTTVEAIIDQIIELIKGG + KIREITDVRDETDLSGLKLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILINGRP + RVMGVRTILNEWLNFRVECIKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGT + EQEAKVVPNLMTGFGIDEIQADYIAEIKLRNLNKEYILNRVGETENLIKEIAELKDIH + GNDNKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKVFLTEHNY + LKKIPLVSLRANPEHKLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEIPDCKAS + SLGEYLTNLLGLDNDEKIIYITATNNYEGYMLFFYENGKGAKIEMSGYATKTNRKKLA + NAYYSGSPLIRMIFITEDIELIAISSINKLLVFNTNSINPKTTKNSQGVQILTSKKGS + LMTDIKTLDEMVLSNVDYYRTKNIPAVGYYIKEEDKTEKQMSLDLE" + gene complement(1702217..1703263) + /locus_tag="Ccel_1400" + CDS complement(1702217..1703263) + /locus_tag="Ccel_1400" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75754.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene 1703497..1704978 + /locus_tag="Ccel_1401" + CDS 1703497..1704978 + /locus_tag="Ccel_1401" + /inference="similar to AA sequence:KEGG:LSA1580" + /note="KEGG: lsa:LSA1580 integral membrane protein" + /codon_start=1 + /transl_table=11 + /product="integral membrane protein" + /protein_id="ACL75755.1" + /translation="MFQKITEKTLIVFCLVYLIIISVWNFVYLIQNKAAVYIFPLELF + CIVVFLVIYRLKAGKRIFAILLFVMAFCLKSYVAVRYNAAPQSDFKLIYNAAIKLAQG + DFSFSNTKYFSLWSYQTGIVLYYGLLLKLGLNVIGLKICNCFFIAGVNVLVYKISERL + VGDRCARFISVMYLFYPATFFLCSVLTNQHVSNFLILLGVYLYIFRKTNTVANTVLAA + VMIAIGNALRPQGILVVAAFIIWAVIELLHKNTDKKIKVETAVKILGFVTVYVLLGKG + MSMATQISGLNQNGLSNNFPLYKIVVGLNSETAGCYSYEDASKLITIKDSKLRNQRAL + GLIKERLTYSDKMKKLMHGKHEKMWVKMDTTIDWGFKYLNQIGITFFRKNIVYENFKI + RILKLEKVFYCFIFVLATVGVFAEIRKHKYKKGFVPISLIIAVNFAVYCMIEIQSRYR + DFQMIFIFILAAVGIKYLAMLVKNNLILWHNRIYLTSVDKTIK" + gene 1705021..1705542 + /locus_tag="Ccel_1402" + CDS 1705021..1705542 + /locus_tag="Ccel_1402" + /inference="protein motif:PFAM:PF00160" + /note="PFAM: peptidyl-prolyl cis-trans isomerase + cyclophilin type; + KEGG: aoe:Clos_0898 peptidylprolyl isomerase" + /codon_start=1 + /transl_table=11 + /product="peptidyl-prolyl cis-trans isomerase cyclophilin + type" + /protein_id="ACL75756.1" + /db_xref="InterPro:IPR002130" + /translation="MNKNPIVTFEMENGNIMKAELYPEIAPNTVNNFISLINKGFYNG + VIFHRVIPGFMIQGGDPEGTGVGGPDYSIKGEFSSNGFKNDLKHDKGVLSMARTMVPD + SAGSQFFIMVERAPHLDGQYAAFGKVTEGIEEADRIVSVKTDYNDKPKEPQVMKTVTV + ETFGVEYPEPEKV" + gene complement(1705620..1707020) + /locus_tag="Ccel_1403" + CDS complement(1705620..1707020) + /locus_tag="Ccel_1403" + /inference="protein motif:PFAM:PF01266" + /note="PFAM: FAD dependent oxidoreductase; + KEGG: hmo:HM1_1957 fad dependent oxidoreductase, putative" + /codon_start=1 + /transl_table=11 + /product="FAD dependent oxidoreductase" + /protein_id="ACL75757.1" + /db_xref="InterPro:IPR006076" + /translation="MNNSMYDVVIIGCGISGIFAGYELTKQNPQLKVVMIEQGHDITK + RTCPIVTNRTEDCIRCKTCDIMRGFGGAGAYSDGKFNFTTAFGGWLNDYLPDDEVMNL + INYVDNVNVEFGATKERFSTYTDEAKAIEKRALENDLHLLQASVKHLGTENNLEILKR + LYNYLLERLELMCNTKVLNIEPCKDGGYAVELHDGQTLNCKYLIAAPGRSGAEWFSQQ + CKRLNLDLINNQVDIGVRVELPAKVFEHITDVVYESKLVYRTKQYGDLVRTFCMNPYG + HVVSENVDGIVTVNGHSYTDPKLRSENTNFALLVSNRFTSPFNEPYQYGKRIASLSNM + LGGGVLVQRFGDLIKGARTNPHRLGQSFTHPTLNATPGDLSLVLTKRHLDNIIEMIYA + LDKIAPGTANYDTLLYGVEVKFYSSRLQLTNELETKLPNMFAIGDGAGVTRGLSQASA + SGVLAARTIINRINNS" + gene 1707355..1707852 + /locus_tag="Ccel_1404" + CDS 1707355..1707852 + /locus_tag="Ccel_1404" + /inference="protein motif:PFAM:PF06177" + /note="PFAM: protein of unknown function DUF1393; protein + of unknown function DUF988; + KEGG: cbf:CLI_3316 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF988" + /protein_id="ACL75758.1" + /db_xref="InterPro:IPR009825" + /db_xref="InterPro:IPR010387" + /translation="MNKNIRRVTVAAMIAAVYFVLTMIFYLTSFQPLQSRLSEALTVL + PYFTPVAIPGIFVGCIISNILGGNGIWDVVIGSLASLLAAYLTYKISYNKPKRKLLAP + LPAVLVNAVFIGTMLSVLSDLPLFATMLSVGLGQVLACYVLGFPLMLLIERTKKLNEL + FKGIS" + gene 1708271..1708843 + /locus_tag="Ccel_1405" + CDS 1708271..1708843 + /locus_tag="Ccel_1405" + /inference="protein motif:TFAM:TIGR01744" + /note="TIGRFAM: xanthine phosphoribosyltransferase; + PFAM: phosphoribosyltransferase; + KEGG: cno:NT01CX_0402 xanthine phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="xanthine phosphoribosyltransferase" + /protein_id="ACL75759.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR010079" + /translation="MELLKQRILKDGRVIGNDILKVDSFLNHQMDVALFNEMGKEFHK + QFAHKNITKILTIEASGIGIACIAAQYFNVPVIFAKKTESRNLDSDAYLSEVFSFTKG + KTYTIRVSKNYLNSEDTILIIDDFLANGKAALGLAHIVEQSGAKLGGIGIAVEKGFQD + GGKLLREKGFDVKSLAIISSMENGRLSFTE" + gene 1708909..1710069 + /locus_tag="Ccel_1406" + CDS 1708909..1710069 + /locus_tag="Ccel_1406" + /inference="protein motif:PFAM:PF02608" + /note="PFAM: basic membrane lipoprotein; + KEGG: cno:NT01CX_0401 Bmp family membrane protein" + /codon_start=1 + /transl_table=11 + /product="basic membrane lipoprotein" + /protein_id="ACL75760.1" + /db_xref="InterPro:IPR003760" + /translation="MKRLTALMLTIVFFCMAVLSGCGLSATDNSGNSSASTSTSAGST + ASDSSDANGLKVGFIYIGSVGDVGYTYAHDQGRKYLETTLKDKNIKTLAVENVPETAE + SEKAINNLIDQGCKVIFATSYGYMEFVEKAAKENPDVKFFHCSGYKSNSTNFVNYFGQ + IEEGRYLSGIVAGLKTKTNNIGYVAAMQIPEVIRGIDFFTLGVRSVNPDAVVNVKWTN + TWYDPQVEKDAATALLNEGNDVIAQHQDSTAAQIAAQEKSAFAIGYNSDSSKAAPKAY + LTAPVWNWGVYYADQVQKILDGTWKAENYLGGMKDGVVDIGPISDLVEDDIKAKVEEA + KKKILDGSLNVLAGPIKDQTGAVKIPEGKVMTVEEQQSCKWFVEGVNGKINK" + gene 1710194..1711723 + /locus_tag="Ccel_1407" + CDS 1710194..1711723 + /locus_tag="Ccel_1407" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cno:NT01CX_0400 ABC transporter, ATP-binding + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75761.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MKNEVYIKIDNLTKTFGSVVANNNVCLEVKKGEIHALLGENGSG + KSTLMNMLSGIYTPDSGSIYIKGKQVTFRTPKDSMAMGIGMIHQHFKLVEVLSAKDNI + IAGQKESFFIGNKQLSKKIENISEKYGLAVDLYKKVYNMSVGEKQTVEILKVIYRGAE + ILILDEPTAVLTPQETEGLFKILRRMKQTGCSVIIITHKLNEVMEISDRITVLRKGET + VGTVNKEDTSATELTNLMVGKAVDLSINRVENKNNKTILNIKNLTVADEENVKALDAV + SFSLSTGEILGVAGVAGSGQKELCEAIAGLYPIASGSIEYKGENIVGKNPRDIIKMGI + SMSFIPEDRLGMGLVASMGMVDNLILKEYQNQKGLFIEKKTARTLAQKLINMLEISTP + GINHPVRQLSGGNIQKVLLGREIESNPDLLITAYPVRGLDINASYTIYDLLNEQKKKG + VGILYIGEDLDVLIELCDRIMVICNGRITGIAEASKITKEKLGLMMAGEEMEKVMGVK + V" + gene 1711723..1712802 + /locus_tag="Ccel_1408" + CDS 1711723..1712802 + /locus_tag="Ccel_1408" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: cno:NT01CX_0399 branched chain amino acid ABC + transporter permease" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75762.1" + /db_xref="InterPro:IPR001851" + /translation="MYRVIKRTDLTQKQSVLFRIIAVFGALIATSIFIMIIGFNPIDV + YVSMLDGSFGSTYRFREAIIQAIPLIVTSLGISVAFRMKFWNIGAEGQIIMGAFAASY + FALYHSNLPTGLLLLVMFVSAVITGGIWSLIPAYFKARFGTNETLFTLMMNYIAQKFL + MYLQYGPWRDPNALGAGKIALFSDNATLPEVFGIHIGWIAAIVLVLLMYIFINKTKRG + YEIQVIGESENTARYAGMNVKKIILSSIFLSGALCGMVGMFQVSGVNHTLSYQVANGV + GFTAIITTWLAGLSAPIIVIACFLFAVLQQGGTYIQTAFNIHSSVAQILQGMILFFVL + GSEFFVQYKLIRKRTTEHTIVKEVA" + gene 1712804..1713745 + /locus_tag="Ccel_1409" + CDS 1712804..1713745 + /locus_tag="Ccel_1409" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: cno:NT01CX_0398 branched chain amino acid ABC + transporter permease" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75763.1" + /db_xref="InterPro:IPR001851" + /translation="MSFMSMITFILAGAVTAGTPLLFATLGEIITEKVGQLNLGVEGM + MLIGAVIGFGAALSTGNPVFGIIAGMVAGAGGALIFAFLTITLRANQIVSGLSLTIFG + AGFSSFLGQKLIGQALSDSVRNSFTPVKIPLLGDIPILGSAFFHQNILVYAGYVAAVL + MGFYMYKTRLGLNLRTVGENPGAADTAGINVTMYKYLHILLGGALSGIAGAYMSMVTV + PSWQEGVTGGRGWIAVALVIFVTWNPFKAMLGSYFFGGLSILGLYLQSHVPIPQSIFD + MLPYLVTIIVLIIISIKKSKENQPPKALGEPYFREER" + gene 1713887..1714057 + /locus_tag="Ccel_1410" + CDS 1713887..1714057 + /locus_tag="Ccel_1410" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75764.1" + /translation="MNKFLRRGCLIFSIILLVYAIIRIVFGRENSGIFYLVAAVGFYI + MYYSYAKSQRKD" + gene 1714169..1715179 + /locus_tag="Ccel_1411" + CDS 1714169..1715179 + /locus_tag="Ccel_1411" + /inference="protein motif:TFAM:TIGR00233" + /note="TIGRFAM: tryptophanyl-tRNA synthetase; + PFAM: aminoacyl-tRNA synthetase class Ib; + KEGG: cno:NT01CX_1355 tryptophanyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="tryptophanyl-tRNA synthetase" + /protein_id="ACL75765.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR002305" + /db_xref="InterPro:IPR002306" + /translation="MEQIEQKKRIFSGVQPSGNLTIGNYLGAIKNWIPLQEEYECLYC + VVDLHTLTVRQKPAELRQRSLNLLALYMACGLDPKKSILFLQSHVSAHSELAWILNCF + TYMGELNRMTQFKDKSQRHGDNINAGLFTYPVLMAADILLYQADLVPIGQDQKQHLEI + TRDVADRFNNIYGDTFTIPEAFIPKIGAKIMSLQEPEKKMSKSDENENAFVLILDPQD + AVMRKFKRAITDSDREIRYDEQNKPGVSNLISIYSSVTGKSISDIEKEFEGRSYGDLK + ETVGQSVVEMLNPIQQRFNEFSSDKEQLNLILKENAEKAAYMARKTLSKVQRKIGLLP + RG" + gene 1715274..1715843 + /locus_tag="Ccel_1412" + CDS 1715274..1715843 + /locus_tag="Ccel_1412" + /inference="protein motif:PFAM:PF02659" + /note="PFAM: protein of unknown function DUF204; + KEGG: cju:C8J_0163 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF204" + /protein_id="ACL75766.1" + /db_xref="InterPro:IPR003810" + /translation="MSLTELILLAIGLSMDASAVSISNSLCIKKIKIKHILQMAVMFA + VFQGIMPLIGYYAANSFENVIERFDHWIAFILLVIIGGKMIHESITADEEQDCSLFSL + TFKLLLVQAVATSIDALAVGVSLSALNVDILYSITIIGIVTFICCTAAILLANRFGNL + LGKRAGIVGGLILVGIGVKIFVQHMFFGG" + gene 1715954..1717936 + /locus_tag="Ccel_1413" + CDS 1715954..1717936 + /locus_tag="Ccel_1413" + /inference="protein motif:TFAM:TIGR00631" + /note="KEGG: cth:Cthe_0309 excinuclease ABC subunit B; + TIGRFAM: excinuclease ABC, B subunit; + PFAM: helicase domain protein; UvrB/UvrC protein; type III + restriction protein res subunit; + SMART: DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="excinuclease ABC, B subunit" + /protein_id="ACL75767.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR001943" + /db_xref="InterPro:IPR004807" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MNFMNKFEVISEYKPMGDQPKAIAKLSKGILEGQKHQTLLGVTG + SGKTYTMAKVIEQVQKPTLVIAHNKTLAAQLCSEFKEFFPNNVVEYFVSYYDYYQPEA + YIPSTDTYIEKDSSINEEIDKLRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLM + LSLRVGMQKDRDDVIKKLVDIQYERNEIDFRRGRFRVRGDVLEIFPANSSEKVLRVEF + FGDEIERITEVDYLTGEIVGTRDHIAVFPASHYATSRHKMDRAMVTIEKELEERLEQF + KMEDKLLEAQRLEQRTRYDLEMMSEIGFCQGIENYSRHISGREAGSSPYTLMDYFPDD + YLLVIDESHVTVSQVGAMYNGDRSRKESLVEYGFRLPSAFDNRPLKFHEFEERVNQVV + YVSATPANYEREHSTQIVEQIIRPTGLIDPEITVKPVKGQIDDLIGEINMRAEKHQRV + LVTTLTKKMAEDLTDYMKELDIRVKYLHSDVVTFERMEIIRDLRLGVFDVLIGINLLR + EGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRAARNSEGMVIMYADNITGSMQRAI + SETNRRRQIQMDYNEKHGIVPTTIQKSVRNVLEATKVAEEEDKYYTEKKATQMSEQEL + ENLIAKLQKEMKQAAADLQFERAAELRDKIELLRGK" + gene 1717936..1718286 + /locus_tag="Ccel_1414" + CDS 1717936..1718286 + /locus_tag="Ccel_1414" + /inference="protein motif:PFAM:PF03788" + /note="PFAM: LrgA family protein; + KEGG: cbl:CLK_3512 LrgA family protein" + /codon_start=1 + /transl_table=11 + /product="LrgA family protein" + /protein_id="ACL75768.1" + /db_xref="InterPro:IPR005538" + /translation="MKLLRQFLIILIICFIGEVLNKVVHVPLPGSIIGMILLFICLIT + GVIKLEKVDEISRFLIDHLAFFFIPAGVALLGYVGVLKESILPILVICFVTTLVVMIV + TGWTIQLIKGRKSR" + gene 1718283..1718978 + /locus_tag="Ccel_1415" + CDS 1718283..1718978 + /locus_tag="Ccel_1415" + /inference="protein motif:PFAM:PF04172" + /note="PFAM: LrgB family protein; + KEGG: cbf:CLI_0396 LrgB-like family protein" + /codon_start=1 + /transl_table=11 + /product="LrgB family protein" + /protein_id="ACL75769.1" + /db_xref="InterPro:IPR007300" + /translation="MKEIIRSPLFALLISILAYEIGILINKKTRIVFFNPLMIAIALV + IGTLLALHIPLEDYQKGGDFIALFLTPATVILAVPLYKNINSLKKDYIAILGGVIVGA + ATAIFSVWAMAKAFGLSKELIASLVPKSITTPLGIELSTQIKGIPSVTVAAIIITGVV + GAVFAEWLLKVCKITDKTAKGIAIGTSSHALGTTKAVDIGETEGAMSGLAIGLAGLVT + VIVATILFKFGFF" + gene 1719055..1719747 + /locus_tag="Ccel_1416" + CDS 1719055..1719747 + /locus_tag="Ccel_1416" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbh:CLC_1692 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75770.1" + /translation="MKNIYVVLSSTPTRMGKLIRIFTRSFYNHSSISLTENLNEMYSF + ARYRASNPLVGGFVKEFPERFTLGKQQDVCIQVFKIPVTEEQYDTIKLFIYKIKDDKE + ENIYNSIAAIGVLLGCKFDTYKAYTCSDFVARTLVEGNILWDTCISKNVIPDDIYMLL + QRYVSYRGCLKAYEPITGVDFDTEDFFVKAGIINEMVYTFNHFYRLIKRSIIYSFYIA + EKLSKINKIFSA" + gene 1719839..1721569 + /locus_tag="Ccel_1417" + CDS 1719839..1721569 + /locus_tag="Ccel_1417" + /inference="protein motif:PFAM:PF02878" + /note="PFAM: phosphoglucomutase/phosphomannomutase; + phosphoglucomutase/phosphomannomutase alpha/beta/alpha + domain I; phosphoglucomutase/phosphomannomutase + alpha/beta/alpha domain II; + KEGG: cth:Cthe_1265 alpha-phosphoglucomutase" + /codon_start=1 + /transl_table=11 + /product="phosphoglucomutase/phosphomannomutase + alpha/beta/alpha domain I" + /protein_id="ACL75771.1" + /db_xref="InterPro:IPR005841" + /db_xref="InterPro:IPR005843" + /db_xref="InterPro:IPR005844" + /db_xref="InterPro:IPR005845" + /db_xref="InterPro:IPR016066" + /translation="MEYLSKLNFWLDNEYFDQDTKNELLSIKNNAKEVEDRFYKSLEF + GTGGLRGIIGAGTNRINIYTVRVASQGLANYINQMGKQDKGIVIAYDPRFMSPEFSLE + AAKVFCANGIKAYLFDELRPTPQLSFAVRYLKAAAGVVVTASHNPKQYNGYKVYGEDG + GQLSIDGSNAVISEINKITDITKVNIISKEDAASKGLLQIIGSEIDDAYIEMLKKLRI + NKDAVSKVADTFKIVYTPLHGAGNKPVRRILAESGFKEVLVVKEQELPDSQFSTVKSP + NPEERSAFELAIKLASDNNVDLIIGTDPDSDRVGVVVRKNDGEYAVLTGNQTGCLLLE + YILTAMKEEGKLPANGFVVKTIVTTELARIIADFYNVELVEVLTGFKFIGEQIKLRDE + NGNQKYLFGFEESYGYLAGTDVRDKDAVVASMLVAEMAAYYKVKGISLYDALTNLYEK + YGYFVEGISSFTLEGKDGVMKIKEALTTMRKTKYESFGGIKVKAIRDYQKSERHVIAS + GATEKITLPESDVLYFEMEDGSWFCVRPSGTEPKIKIYYGVSDRTLNLSQDKLEKFKA + GVLDVIKPLL" + gene complement(1721628..1722440) + /locus_tag="Ccel_1418" + CDS complement(1721628..1722440) + /locus_tag="Ccel_1418" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: cth:Cthe_0218 metallophosphoesterase" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL75772.1" + /db_xref="InterPro:IPR004843" + /translation="MSYIIIILVLTAFLLIYMLFETTLLKKNYINFSKSSTGLKIAHL + SDLHVNHLHISKKRIIKALKDVNPDIVLITGDYIETVEDIPKALDLIKALADIFPVYL + TLGNHEHKALVNKKNGVGSFIDQINQTGATVLNNAGKSISKNGTAYNIIGIDDLRRGK + PDLDKAFSYMDSSSRDSINIVFSHNPDMALLLPKDKAHYFLCGHFHGGQIWMPFHLEF + RILRREKLCRMGYRRGLHKINGIIIYINRGLGNVLFPLRFLSVPEIAVIQFP" + gene 1722804..1723856 + /locus_tag="Ccel_1419" + CDS 1722804..1723856 + /locus_tag="Ccel_1419" + /inference="protein motif:PFAM:PF01966" + /note="PFAM: metal-dependent phosphohydrolase HD sub + domain; + SMART: metal-dependent phosphohydrolase HD region; + KEGG: mta:Moth_2263 metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL75773.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /translation="MRKINISNCQAGMTLGKAVYYDGSSMLIDEGTVLTPSHLAQIAS + LGITELYIQDSFSKDIIVKDVIRDITRLEAIHFMKQTMEKYSLEGMPSSGNIISIVDK + ILNDILKSEEIIVNLMDIKTFDGYTFSHSVNVCILSLIIGIKLKLGQSELRELGVGAL + LHDIGKVLIPTDILNKKSSLSNDEFEVIKRHSRLGYDILKNIQGISEKSALVALNHHE + RCDGKGYPMALQKQEIHLYSKIVAVTDIFDALTSDRIYRKKIDTFNAINYLESINNLL + LDSQILDCFVNVIPPYPIGTEVTMSSGEKGIVIGLNKSHIPIVRLNVNSDGTSKYPYE + EINLESCNNYFIVSSS" + gene complement(1723923..1724005) + /locus_tag="Ccel_R0032" + /note="tRNA-Leu5" + tRNA complement(1723923..1724005) + /locus_tag="Ccel_R0032" + /product="tRNA-Leu" + gene complement(1724120..1725301) + /locus_tag="Ccel_1420" + CDS complement(1724120..1725301) + /locus_tag="Ccel_1420" + /inference="similar to AA sequence:KEGG:BH1410" + /note="KEGG: bha:BH1410 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75774.1" + /translation="MTKRAKLLLTVSALFTLSMGMSNVFLNILLWKESKNFIVLAQYN + LMQYIFLPITFIFAGWLSKRKNGIWSLRLGIAFFITFFGLILFLKDRISKLVLLFGIL + YGIAAGFYWLAFHVLCFDFTSTENRDTFNGFNGSIAGICGAAAPISSAYIINKNFLGM + GYTIVFSISLLLFVVLILVSFLIKAEYYDSKMNFKKIFNINLQDWSFLRKGLLMWGFR + DVIIGFLIIVLVFKSTGSEWSVGTFSLIASIISSVTYVIEQKLIKPKSRLKSMLTGAL + VMFIAVWGLVVNIRYGTLLLYMIMESASLPFFLVPFSSASFNIISIQHQDDLRLEYII + NKEIMLNSGRIVSLLILISLLWFIKYDWSLNFFLLFIGCTQLIALYFLRKMNVWRMSN + S" + gene complement(1725442..1725891) + /locus_tag="Ccel_1421" + CDS complement(1725442..1725891) + /locus_tag="Ccel_1421" + /inference="protein motif:PFAM:PF05154" + /note="PFAM: TM2 domain containing protein; + KEGG: pmr:PMI0244 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="TM2 domain containing protein" + /protein_id="ACL75775.1" + /db_xref="InterPro:IPR007829" + /translation="MAQNVCPQCGAPCALSDRECKYCGEAIAADVNSAPSSNQRPVSG + NQEYEAQMYKQQVAQQQQQFAQHQYINNGIDPAWPIKNKIAAGLLGIFLGGLGIHKFY + MGKIGLGILYLLFCWTFIPGFVGFIEGIIYLCSNDHNFQVKHRVRLQ" + gene complement(1725971..1727113) + /locus_tag="Ccel_1422" + CDS complement(1725971..1727113) + /locus_tag="Ccel_1422" + /inference="similar to AA sequence:KEGG:Cphy_3771" + /note="KEGG: cpy:Cphy_3771 antifreeze protein type I" + /codon_start=1 + /transl_table=11 + /product="antifreeze protein type I" + /protein_id="ACL75776.1" + /translation="MAIIDRVKFDGLRSRDWIVYKHPVEDLVYGTQLIVGEGQIAVFV + KGGEVCDLFTPGTYTLDAKNLPILRVFVNLPFGGKTPFSAEIYYINTTTKLDINWGTS + DPVQIIDPKYYTRLRIRAFGQMGLKLDNYETFFRELIGVMNPADIIKFNNVIDFFKGM + LIQKIKSIIANVIVNQKISALEITARLDDIANYTFDLIAPEFAKYGLSAISLIIKSIN + FPDEDFEEINKILKNKAEFEIMGDNRYVTKRSFDVYDHAASNNSGVAGAFAAGGVGLG + VGLGVGASLGSDIHNTINTRAAADKATIACPSCKAQNPAKSKFCCECGKLLETPKKVC + ASCGVLIPGDPKFCPECGTSMGTQTCECGAEVPVSTKFCPQCGKKL" + gene complement(1727187..1727855) + /locus_tag="Ccel_1423" + CDS complement(1727187..1727855) + /locus_tag="Ccel_1423" + /inference="protein motif:PFAM:PF00027" + /note="PFAM: cyclic nucleotide-binding; + KEGG: cdf:CD2170 putative cNMP-binding regulatory protein" + /codon_start=1 + /transl_table=11 + /product="cyclic nucleotide-binding protein" + /protein_id="ACL75777.1" + /db_xref="InterPro:IPR000595" + /db_xref="InterPro:IPR012318" + /translation="MNNKIEILKQAAIFQNVSEKNMLYMLDCLKAYEQIYTKNDILLL + TGDKVSSVGIILSGSAQIVKEDIMGNRNIVSEIGTSDMFGEAFACANVAKSPVTVITT + TGCAVMYIQFNKIVTTCSSSCSFHTKLIENMLSLIAQKNIFLNSKIDILSQRSTREKL + MAYLSMQIQRTGKNRFKISFSRDELADFLCVNRSALSRELSKMKQENILDYDRNEFVV + YPAE" + gene 1727987..1729555 + /locus_tag="Ccel_1424" + CDS 1727987..1729555 + /locus_tag="Ccel_1424" + /inference="protein motif:TFAM:TIGR01703" + /note="TIGRFAM: hybrid cluster protein; + PFAM: Prismane; + KEGG: swo:Swol_2190 hydroxylamine reductase" + /codon_start=1 + /transl_table=11 + /product="hybrid cluster protein" + /protein_id="ACL75778.1" + /db_xref="InterPro:IPR004137" + /db_xref="InterPro:IPR010048" + /translation="MSDMFCFQCEQTAAGKGCTGGAGVCGKKADTSNYQDLLTGAMIG + LAKTAQNAKPTESTHKTVIEGLFMTITNVSFDNASIQSHIEKVNSEKLNLVNGVAAQN + NYEMENLWNAHEDIRSLKSLILFGIRGMAAYAYHALVLGYSDEEVNNFFYKALRAVGS + DMSIDELLSIVMETGEVNLKCMALLDKANTETYGTPVPTSVPMTVEKGPFIVISGHDL + YDLHLLLEQTKDKGINIYTHGEMLPAHAYPKLKAYTHLKGNFGTAWQNQQKEFDNIPA + PVLFTTNCLMPVKPSYSDRVFTTEVVAYPEIVHIGDDKDFTPVINKALELGGYKEDTR + FTGINGGDTLTTGFARGTVLSVADKVIDAVKAGAIKHFFLVGGCDGAKVGRNYYTEFV + KKTPKDTVILTLACGKYRFNDLDIGEIGGLPRIMDMGQCNDAYSAIQVASALANAFEC + DINELPLSLVLSWYEQKAVCILLTLLSLGIKNIYLGPTLPAFVSQNVLNILVEKFNIS + TISTPDEDLKKILG" + gene 1729862..1730275 + /locus_tag="Ccel_1425" + CDS 1729862..1730275 + /locus_tag="Ccel_1425" + /inference="protein motif:TFAM:TIGR00220" + /note="TIGRFAM: large conductance mechanosensitive channel + protein; + PFAM: large-conductance mechanosensitive channel; + KEGG: pmu:PM1564 MscL" + /codon_start=1 + /transl_table=11 + /product="large conductance mechanosensitive channel + protein" + /protein_id="ACL75779.1" + /db_xref="InterPro:IPR001185" + /translation="MKKSKFISEFKEFISRGNVVDLAVGVIIGSAFTAIVNSLVNQII + MPVIGFIIGGINFSDFKWTLKNAEGDTPEVAVYFGSFIQQVVNFLIIAFVVFMMVKLI + NMLKRKKEKEIEEIKEEKVSKEEILLTEIRDLLRK" + gene complement(1730385..1731371) + /locus_tag="Ccel_1426" + CDS complement(1730385..1731371) + /locus_tag="Ccel_1426" + /inference="protein motif:PFAM:PF00188" + /note="PFAM: SCP-like extracellular; + KEGG: cdf:CD2681 putative calcium-chelating exported + protein" + /codon_start=1 + /transl_table=11 + /product="SCP-like extracellular" + /protein_id="ACL75780.1" + /db_xref="InterPro:IPR014044" + /db_xref="InterPro:IPR014258" + /translation="MIKKSSIVLSSVAACAILASSFVFNGFAIGNTKAESIASLDTTK + ISQSTVPSKTLDSIVSKVAPASAEKSKDVSDSKKATVNNVSANTSKSTNCPTNSVDKV + TDKNSVQTSYNQPTTATNNKIESANIMDKLQRIVYTKNCDNSTAKNTNNSNIQSALNS + ILNSRLSAAKPTTSKPSTSKPATSKPATPQKPASTPATNGDYTAFQKRVVELVNAERA + KNGLKPLTMNSQVNKTATLKSQDMAKLGYFDHNSPTYGSPFDMMKKYGISYRTAGENI + AMGQTTPEQVMKGWMNSPGHRANILKSSFTQIGVGVAKNSSGRLYWTQQFIG" + gene 1731764..1732582 + /locus_tag="Ccel_1427" + CDS 1731764..1732582 + /locus_tag="Ccel_1427" + /inference="protein motif:PFAM:PF02535" + /note="PFAM: zinc/iron permease; + KEGG: cbf:CLI_1259 ZIP family zinc transporter" + /codon_start=1 + /transl_table=11 + /product="zinc/iron permease" + /protein_id="ACL75781.1" + /db_xref="InterPro:IPR003689" + /translation="MEWLNNQNPVLLALFATLTTWALTALGAAMVFFFKEINQRLLNT + MLGFAAGVMIAASFWSLLAPAIEMAESSSKIPAWLVAALGFIGGAFFLYLADRLIPHM + HLNSKDGESEGISTNLRRSILLVFSITLHNIPEGLAVGVAFGAAANGINNVTLLSAIA + VAVGIGIQNFPEGAAVSIPLRREGLSRTKSFLYGQSSGIVEPIAGVIGAALVMYVQPI + LPYALAFAAGAMIFVVVEELIPEAQSGNHKSTHMATAGCIIGFVVMMILDVALG" + gene complement(1732579..1733436) + /locus_tag="Ccel_1428" + CDS complement(1732579..1733436) + /locus_tag="Ccel_1428" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; AraC protein arabinose-binding/dimerisation; + KEGG: cpy:Cphy_3256 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75782.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003313" + /translation="MCKPEICAENFNPTLLYAYINMVNSESHVTLHTHDYTEVKIVLS + GYFKYIIDDKLYEVAKGNIIIINPGVQHEKIIPSGVKVEEFNYGLTNIHFKELPENFL + IEPSSLPVFTLPLYQPEIIKCINETINEQEKNEPYCDLFIKSSIMKLTALLHRGMTAN + KERTEKTRLDIQTSEKTNIVNDILEYLSTNYMEQISLYRIAHNMYLSPVYISKIFKEE + TGESPINHLIRIRLTKARELLMSGNMPIKTVARSVGYEDAFYFSKLYKKYYGIPPSME + KRSNAADII" + gene 1733643..1735388 + /locus_tag="Ccel_1429" + CDS 1733643..1735388 + /locus_tag="Ccel_1429" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: lin:lin0156 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75783.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MENFKWVWQYIKKYKLRMCIAMIFVLVASALCMVTPYASGIIID + KVIRQSQHDMLLKLCILMLAATILKSIIRFSYQIIFETISQGAFMKIRESMYQKLQNM + DFKFFDTTRTGDIMARMTGDLDIVRHLISWVIYMVFENATVFIFAVTLLFTINWQFTL + VMLLVIPFLAWAAIKLASDVRPTFSAIREQFSRLNSVVQENISGNRVIKAFATEYIEI + NKFDKENEAYRKRNMDSAKVWSKYLPIIDALAGTLSLTIIIIGGVLAINNKITIGELV + TFNSIVWALGNPMRNSGWLINDIQRFNASADKIREYLNNESAISNIEKPANREITGFV + EFNNVSFGYDNEEVLKNVSLKAKPGETVAIIGPTGSGKSTLVNLICRFYDCSEGEVLV + DNVNVKEMDLRTLRSKVSVAMQDVFLFSDTIEGNIAYGVPDAPYESIKRAAGIADADE + FISSLPEGYDTIIGERGVGLSGGQRQRIALARAILKDPSILILDDTTSSVDMETEFEI + HKTLRSFYNNKTTFIIAHRISSVKNADKIIVLNDGQVVEQGTHQELLNLKSYYYKVYQ + SQYGDFDGLDEKEVG" + gene 1735389..1737167 + /locus_tag="Ccel_1430" + CDS 1735389..1737167 + /locus_tag="Ccel_1430" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: efa:EF1593 ABC transporter, ATP-binding/permease + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75784.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017940" + /translation="MARNKYDVDEELLTKFKMKDLIRLLKYLKPYKVTMFGTVLLMLS + ASVANLIGPLLVQDAIDFKIPQGDIKGLVILSGIFVGTLIVNAVCFKFRVILMSQLGN + NVVKKIREDIFYKIQKLPFSYYDSRPHGKILVRVVNYVNSLSDLLTNGFINFITDMFT + LVCIIVFMLFINVKLTLISMIGLPPLFICIMLIKNIQRKNTQALSMKQSNLNAYIHES + ICGVKVTQSFAREEQNQGIFHELNKIYRRAWMRFVKANFILWPIIETISIIGIIILYF + GGIFWVKGITIGVLIAFTSYISRFWQPISNLGNFYNAMINAMAYLERIFETLDEEVSI + ENLPGAIPMPEVKGAVEFKNVGFSYEEDKKILDNINFRFQPGSSIALVGPTGAGKSTI + INLLSRFYDVQEGEVLIDGINIREVQLESLRKQMGVMLQDTFLFSGTVMSNIKYARPD + ATDEEAIEAAKTVCAHEFIMNMPNGYQTEINERGTRLSIGERQLISFARALLADPKIL + ILDEATSSIDTRTELALQRGLQGLLVGRTSFIIAHRLSTIKNAHCIMYVDNGSIVERG + THDELMSARGHYYKLYNSQFSVMEAG" + gene 1737315..1738379 + /locus_tag="Ccel_1431" + CDS 1737315..1738379 + /locus_tag="Ccel_1431" + /inference="protein motif:PFAM:PF01263" + /note="PFAM: Aldose 1-epimerase; + KEGG: amt:Amet_3800 aldose 1-epimerase" + /codon_start=1 + /transl_table=11 + /product="Aldose 1-epimerase" + /protein_id="ACL75785.1" + /db_xref="InterPro:IPR008183" + /translation="MTITKRYFGTLPGGTEANIYTLKNSNNMSVDITNYGGTIVSILV + PDKNGKIADIALGFDDLKKYTENDAYIGALIGRHGNRIEDAKFELNGKVYELVKNDGN + NHLHGGTIGFHNVVWNADIQEEKGVQKLILTHTSPDGEENYPGNLNVKVEYSLTEDNE + LKIDYTAISDKDTVVNLTNHAYFNLSGHDSGDVLKHQIYINADNFTPVNDECIPTGEI + REVKGTVMDFTQLRSFSEGLSSTDQQVVNGGGYDHNWALNTKGNINEVACELYDPESG + RAMQVFTTKPGVQFYSGNHLSKTVQLIGKNSAVYNKRAGLCLETQYFPNAMRHKNFPS + PILNANEKYHHITIYKFLNK" + gene complement(1738435..1738611) + /locus_tag="Ccel_1432" + CDS complement(1738435..1738611) + /locus_tag="Ccel_1432" + /inference="similar to AA sequence:KEGG:Dred_2849" + /note="KEGG: drm:Dred_2849 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75786.1" + /translation="MEDKTLTCKDCGATFTFTVGEQQFYAEKGFTNEPARCPDCRRAK + KASQKSFNGGFNRR" + gene 1738952..1739028 + /locus_tag="Ccel_R0033" + /note="tRNA-His1" + tRNA 1738952..1739028 + /locus_tag="Ccel_R0033" + /product="tRNA-His" + gene complement(1739138..1741084) + /locus_tag="Ccel_1433" + CDS complement(1739138..1741084) + /locus_tag="Ccel_1433" + /inference="protein motif:PFAM:PF00488" + /note="PFAM: DNA mismatch repair protein MutS domain + protein; + SMART: MutS III domain protein; + KEGG: cpy:Cphy_1218 DNA mismatch repair protein MutS + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="DNA mismatch repair protein MutS domain protein" + /protein_id="ACL75787.1" + /db_xref="InterPro:IPR000432" + /db_xref="InterPro:IPR007696" + /translation="MNKYAVTLEFNKIIEMLMENTVSQRAKENLSMLQPFLKEGECRR + RMKETTNAKRILESLGTPPLSSMNELDRILDLCSKGAMLVPEQLEEVSQFLLACRRMK + SYLKRTESLENDIAYYGSSIDALNDLCEEIEHSIRNGRVDDSASPKLKDIRRRKDNSH + QQVRTKLESILRSKKEWFADSFVSMRNGHFVLPVRKEYKNMVVGSLIETSATGGTYFI + EPSAVRRLQEEISALTVEEENEERKILYTLTSLVDEHSAVFKTNVDIMETLDAVFAKA + KLSVQMKACEADIHMDRRIVIKAGRHPLLNQSECVPLDFEIGSGIRGVVITGPNTGGK + TVALKTVGLLSIMAQSGLHVPAAMGSEFSMHNMILCDIGDGQSITENLSTFSAHITTI + NDILRQSTGESLVLLDEVGSGTDPAEGMGIATAILEDLKNKGCLFVATTHYPEIKDYA + KKTPGLVNARMAFDKESLKPLYKLEIGEAGESCALYIAKRLGFPPHLLRLAHDAAYKE + YPTKVNSENNESLLSPIGADSQSGIPPDLNAPVLIKENPKKNVPQNRSSRFNIGDSVM + VFPQKEIGLVYQKANEHGEIGVQIKGQKKLLSHKRIKLHVPASELYPADYDFSIIFDT + VDNRKARHKMGKRHNPELFIEYEN" + gene complement(1741608..1741683) + /locus_tag="Ccel_R0034" + /note="tRNA-Lys4" + tRNA complement(1741608..1741683) + /locus_tag="Ccel_R0034" + /product="tRNA-Lys" + gene complement(1741687..1741763) + /locus_tag="Ccel_R0035" + /note="tRNA-Gln2" + tRNA complement(1741687..1741763) + /locus_tag="Ccel_R0035" + /product="tRNA-Gln" + gene complement(1741833..1743452) + /locus_tag="Ccel_1434" + CDS complement(1741833..1743452) + /locus_tag="Ccel_1434" + /inference="protein motif:TFAM:TIGR00503" + /note="TIGRFAM: peptide chain release factor 3; small + GTP-binding protein; + PFAM: protein synthesis factor GTP-binding; elongation + factor Tu domain 2 protein; + KEGG: cth:Cthe_0328 peptide chain release factor 3" + /codon_start=1 + /transl_table=11 + /product="peptide chain release factor 3" + /protein_id="ACL75788.1" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR004548" + /db_xref="InterPro:IPR005225" + /translation="MPDLKSEIKKEVSRRKTFAIISHPDAGKTTLTEKLLLYGGAIRL + AGSVKARKANKYAVSDWMEIEKQRGISVTSSVMQFEYNDYCINILDTPGHQDFSEDTY + RTLVAADSAVMLIDGAKGVEAQTIKLFHVCKMRGIPIFTFVNKMDRASKDPFELMEEI + EQVLGIRSYPMNWPIGTEGDFKGIYNRNLSQIELFGGGAHGQTQVSSTVGKVDDTIFT + DLLGSHYHDKLCEDIELLDMAGEEFDREKIRCGELTPMFFGSAMTNFGVQPFLEAFLE + LAPSPGIKETSEGEIDPENNKFSGFIFKIQANMNPTHRDRLAFLRVCSGKFTKGMTVR + HVNAGKDVRLSQPQQFMAQERTIVEEAYPGDIIGLFDPGIFKLGDTLYEGNNNVRFES + IPIFPAEFFARVSPADTMKRKQFIKGIEQLSEEGAIQVFKQIDIGIEALIIGVVGALQ + FEVLEYRLKNEYGVSLRIQNLPFRHARWIENEGLDPRKLNLPSTSIIVQDKEERNSIL + FENEWSIRMAEERNKDLKLIDIATQDFKVQK" + gene 1743739..1745397 + /locus_tag="Ccel_1435" + CDS 1743739..1745397 + /locus_tag="Ccel_1435" + /inference="protein motif:SMART:SM00382" + /note="SMART: AAA ATPase; + KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase" + /codon_start=1 + /transl_table=11 + /product="AAA ATPase" + /protein_id="ACL75789.1" + /db_xref="InterPro:IPR000764" + /db_xref="InterPro:IPR003593" + /translation="MSNNQIFVTINNQRYELEDSTTLLELSKRFEKEYVSTIVAARVN + NDIKELSFEIKENAEISFLDLTDEDGMRIYRRSLYFIFIMAVQDVFPDRKAVISHPMS + NGVYCEINGKDELSEDDVELVEKRMREIAAGKMPFEKKEISTESARKLYKESGKLDKY + EVLEHRQKPYVTFYNCGGYENYYYGYMVPDTGYINCFALKFHKPGVVIQFPSRKEPCR + LQPFTEQKKLFNVFIEYKKWVRILGVENIGSLNDIVKAGEIGDLIRVSEALHEKKIAQ + IADKITNHEEEKRIVLISGPSSSGKTTFANRLGIQLRVNGFIPKTISLDNYFVNRDRT + PLDEDGEYDYEALEAIDVELFNTHLSELLNGSEVEVPLYNFETGSRESVGKKMVIRDN + NILVIEGIHGLNDKLTEAVSCEDKYKIYVSALTSINIDDHNRIPSTDTRILRRIVRDN + QFRGCSAINTINRWPSVRRGEEKNIFPFQENADIMFNSSLVYELCLLKVYAEPLLLKL + GPDNERYSEVKRLIEFLSYFLPIDAKDVPNNSIVKEFIGGSCFF" + gene 1745510..1745833 + /locus_tag="Ccel_1436" + CDS 1745510..1745833 + /locus_tag="Ccel_1436" + /inference="similar to AA sequence:KEGG:Cthe_0336" + /note="KEGG: cth:Cthe_0336 DRTGG domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="DRTGG domain-containing protein" + /protein_id="ACL75790.1" + /translation="MTLECLLQKIDGKVLTGNFKEITLENVYICDLLSWVISHARKGD + AWITVLTNVNVPAVALLTQVGCVIIPENIEVEELTLRKAKENGILMIGTQYNAFEICK + RFINQ" + gene 1745889..1746698 + /locus_tag="Ccel_1437" + CDS 1745889..1746698 + /locus_tag="Ccel_1437" + /inference="protein motif:TFAM:TIGR00186" + /note="TIGRFAM: RNA methyltransferase, TrmH family, group + 3; + PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose + methyltransferase substrate binding; + KEGG: cth:Cthe_1222 RNA methyltransferase" + /codon_start=1 + /transl_table=11 + /product="RNA methyltransferase, TrmH family, group 3" + /protein_id="ACL75791.1" + /db_xref="InterPro:IPR001537" + /db_xref="InterPro:IPR004441" + /db_xref="InterPro:IPR013123" + /translation="MNYIQSSQNSTIKDIKSLHLKKNRDAHGLYFVEGIRFVSDAIDN + GQSIAKIIISEKLEGLNGGSELIEKVKGACSDISLVPEKIFREVSDTQTPQGILAVIK + KNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL + RSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGN + EANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQKSHIQFL" + gene 1746786..1747799 + /locus_tag="Ccel_1438" + CDS 1746786..1747799 + /locus_tag="Ccel_1438" + /inference="protein motif:PFAM:PF00356" + /note="PFAM: regulatory protein LacI; periplasmic binding + protein/LacI transcriptional regulator; + KEGG: mta:Moth_2024 LacI family transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LacI family" + /protein_id="ACL75792.1" + /db_xref="InterPro:IPR000843" + /db_xref="InterPro:IPR001761" + /translation="MNNIFDIARMAGVSKTTVSRVINNQPGVREETRIKVQEAIKKLN + YVPNHAARSLVSRKSGVIGVVLNEFNASVYLKLANYLEKFAYNYNYNVVFCSSNDNYE + SKSRYVQYFTGGAADGLILFGSDTRDKELVKRILKTGFPLVLIENYFNDINVNDVIIN + NFSGAVNAVNYLVGLGHRKIAHITGNVNHRAALERLNGYIRALNENGLAYSKEYVINT + DSGEQSGCKAADQLLKLKEPPTAVFTFNDMQGYEVIQRASELGLSVPRDLSVVGFDNI + YDIFRFIPSNVRLTSMKQPMEKVAEAAIQLMVANIDNADEQPKVISFETELFHGTSCC + ERK" + gene 1747872..1750226 + /locus_tag="Ccel_1439" + CDS 1747872..1750226 + /locus_tag="Ccel_1439" + /inference="protein motif:PFAM:PF06165" + /note="PFAM: putative carbohydrate binding; + glycosyltransferase 36; glycosyltransferase 36 associated; + KEGG: csc:Csac_1090 glycosyltransferase 36" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase 36" + /protein_id="ACL75793.1" + /db_xref="InterPro:IPR009342" + /db_xref="InterPro:IPR010383" + /db_xref="InterPro:IPR010403" + /translation="MRFGYFDRKNREYVVTRPDTPTPWINYIGSGNYGGIVSNTGGGY + SFHKDPQNRRVTRYRYNNIPMDRPGRYVYIRNKDTGEYWNPGYQPVQKKLDGYSCRHG + LGYSVLTGEYKGVIGEVTYFVPDDKNFELWFVKVSNTRSIQQNLQIFAYSEFCFWDAI + MDQQNVDWVQQINQGRFDDGIITYHPHHVSDNAAFFATGEKVSSFDTNLETFIGRYRS + EGNPIAVEQGACSNSISYRTNGVGAFCIDCDLGPNEERELVFVLGFAEEKSEIRKDIK + EYLLPENAKAAFSRLQASWLDFTSKLSVETPDEDMNLFVNIWNQYQCKTTLNWSRFVS + LYQLGLGRGMGIRDSAQDTLGVMHTIPAEAKEVIIKLLKCQYTDGRAYHLFFPLTGEG + GQGDAPVKKFDWYSDDHLWLILAVNAYIKETGDFEFLNMEVPYNDKITSQTVMRHLDM + ALEFTNNNRGPHNIALAGRADWNDTLNLDTGKGVAESVFTSMLYCRALIEMIEILDYL + KNTDMIKKYSDMYEDMKNAINDTCWDGEWYKRAFDDNSQPLGSKENKFGKIFINSQSW + AVLSKVAENGRANESMESVEKYLNSKYGVVTMYPAYTEYDTTKGGVTTFPPGTKENGG + IFLHTNPWVMISEVMLGHGDKAFMYYNQILPGKRNDDAELYEVEPYVYCQNILGKEHP + QFGIGRNSWLSGTAAWNMVASSQYILGIRANYDSLTVDPCIPSSWKGFKATRVFRGAT + YYIEVQNPNRVCAGVEKIIVDGVETEKIPVFEAGTEHNVVVVMK" + gene complement(1750270..1750617) + /locus_tag="Ccel_1440" + CDS complement(1750270..1750617) + /locus_tag="Ccel_1440" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75794.1" + /translation="MICPNCKIEYEKGYTQCSDCNIDLVERANLPQHVYRISQVGLSM + LKFGIVLLFVSIFELMTVITLNDTYIIHRTYGGSPGGILSDINPILKILLAVQFIISV + MVIIYGFFSKERN" + gene complement(1750639..1751583) + /locus_tag="Ccel_1441" + CDS complement(1750639..1751583) + /locus_tag="Ccel_1441" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_0712 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75795.1" + /translation="MDNKQLQEIKDRLAVLPALEHRMESLRKRITEAKNNVNTLLRKF + EAETLDVENIKKDSLTNSLRKLLGKYEGKINKETQEMLTAKLEYDRAVENVKVLSEQE + SELKGRISELNELKRTQENELAKREEFIKNNISADSFKMYMEIEQEHEFLFGQVVETQ + EAIGAANKVLITADNAMEHLNKAEDLATLDVWLKGGILTHNAKYSHIEEAQRYFNILN + SQVKAFETELNDVNMQASYLSCEIDSTTRAVDFWFDNIFTDLKVRDKIQSDAEDLRDL + IDKINRTLRILETKRKELKKNLSDNESRKADLIASIEI" + gene 1752093..1753124 + /locus_tag="Ccel_1442" + CDS 1752093..1753124 + /locus_tag="Ccel_1442" + /inference="protein motif:TFAM:TIGR00468" + /note="TIGRFAM: phenylalanyl-tRNA synthetase, alpha + subunit; + PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl + tRNA synthetase class II domain protein; + KEGG: sus:Acid_6396 phenylalanyl-tRNA synthetase, alpha + subunit" + /codon_start=1 + /transl_table=11 + /product="phenylalanyl-tRNA synthetase, alpha subunit" + /protein_id="ACL75796.1" + /db_xref="InterPro:IPR002319" + /db_xref="InterPro:IPR004188" + /db_xref="InterPro:IPR004529" + /db_xref="InterPro:IPR006195" + /translation="MIGKISKLRDVAVAKIKEAGSSAEVEELRVKLLGKKGELTEMLK + DLKNMAIEERKQFGQEANALKNELSEIIEAKFKELSANDVKKSLSSGSNFDISLPGTH + YKLGSLHPVTIVQKEIEKIFTGMGFNIVDGPEVEEEFYNFEALNIPKHHPARDMQDTY + WLENGSLLRTHTSPCQVRAMQKYGAPLKVIAPGRCFRNESTDASHENTFFQLEGMMID + KNVSIANLIYVMKLLLSEVFQRDVKIRLRPGFFPFVEPGFELDLNCMICGGKGCPTCK + HSGWIELLPCGMVHPNVLRYGGIDPEEYTGFAFGLGLTRLAMMKYGISDIRVLNSGDL + RAMEQFSVR" + gene 1753137..1755518 + /locus_tag="Ccel_1443" + CDS 1753137..1755518 + /locus_tag="Ccel_1443" + /inference="protein motif:TFAM:TIGR00472" + /note="TIGRFAM: phenylalanyl-tRNA synthetase, beta + subunit; + KEGG: cbb:CLD_1411 phenylalanyl-tRNA synthetase, beta + subunit" + /codon_start=1 + /transl_table=11 + /product="phenylalanyl-tRNA synthetase, beta subunit" + /protein_id="ACL75797.1" + /db_xref="InterPro:IPR002547" + /db_xref="InterPro:IPR004532" + /db_xref="InterPro:IPR005121" + /db_xref="InterPro:IPR005146" + /db_xref="InterPro:IPR005147" + /translation="MKISLNWIKDYVDLEGIDIKELWYRFTMSAAEVEEVEFVGQDIK + NVVVAKVLSVVPHPESKKLKITQVDSGDGIIQIVCGAPNVAEGILVPLVKISGSVNKI + PKIGKAKLVGVESFGMLCSASELGISDDHSGLLVLDGDYAPGTDIKSIIDIDDVIIEI + DNKSLTNRPDLWGHYGIAREIAAIYGRELKPMNLDSLEGSEEKSKLDITVEDTEKCLR + YSGLKIDGVKKLETPLNMKVRLFYCGMRSISPLVDLTNYLMLEMGQPMHAFDSRQVES + GIVVRSTKETTSFKTLDGIERKLPEDVLLICTKERPVAIAGIMGGENSEVLEDTTSIL + LESATFEGASTRKSSTKIGLRTEASARYEKMLDPNMTVQALQRFVKLLRDMQPDIEFA + SALTDVYCNKLEPIDIEITKSYIDKYIGNTLTAERMVEILRSLEFKVDVEGDTFRVKV + PTFRATKDVTMKVDIIEEITRVYGYDNIQPQTLDVALKPLQYNEERLFDHKVKELLSE + RFGASEVNSYIWYDNNFNSRAGIETKAQVKVLNPQAHDSNTLRDSMVPGMLAFAEKNE + KTYDDFSFFEIGSIFNAANSKEKCEQHKNICVLAASKLKSEDELFYDLKGLLSFIAKT + VKNIDLDYTVCTKEHNWVHPVKSVDVSCNGKLMGYLSVVHPMIKKNIGKKLNIAVLEI + NRDVLHNIEQKAIKYKEPSKYPEVLLDYSFLVDNSVTFDKLMQDIGAFKSDVLNGFEF + VTIYNGKGLPEGKKSMTFRFVIGSAEKTLSSEDINAFANSLLDYMAEKGYTLR" + gene complement(1755591..1755821) + /locus_tag="Ccel_1444" + CDS complement(1755591..1755821) + /locus_tag="Ccel_1444" + /inference="protein motif:PFAM:PF00269" + /note="PFAM: small acid-soluble spore protein alpha/beta + type; + KEGG: cth:Cthe_0216 small acid-soluble spore protein, + alpha/beta type" + /codon_start=1 + /transl_table=11 + /product="small acid-soluble spore protein alpha/beta + type" + /protein_id="ACL75798.1" + /db_xref="InterPro:IPR001448" + /translation="MSRPKTPLVEDSREALTRFKMECAAEIGRTQFTKENNDHYKGDL + TARQNGSEGGPIGGQMVKKMVAAYENQLKNQQ" + gene 1756044..1757396 + /locus_tag="Ccel_1445" + CDS 1756044..1757396 + /locus_tag="Ccel_1445" + /inference="protein motif:PFAM:PF00342" + /note="PFAM: phosphoglucose isomerase (PGI); + KEGG: cth:Cthe_0217 glucose-6-phosphate isomerase" + /codon_start=1 + /transl_table=11 + /product="phosphoglucose isomerase (PGI)" + /protein_id="ACL75799.1" + /db_xref="InterPro:IPR001672" + /translation="MERVTFDSSKASGFVSDYEINYFEGYVEQAHKMLHEKNGPGSDF + LGWVDLPLNYDKDEFARIKKSADKIKSDSDVLIVIGIGGSYLGARAAIEMLSHSFYNM + LPKDKRKTPEIYFVGNNISSTYLSDLLELIEGKEISVNVISKSGTTTEPAVAFRIFKE + YMENKYGRQEAQKRIYTTTDKAKGALKNLADEEGYESFVIPDDVGGRFSVLTAVGLLP + IAVCGADIDMIMKGALDAYNLYKDFDFKNNDCYRYAAARNALYNKNKTIEIMVNYEPS + LHFFTEWWKQLYGESEGKDQKGIFPAGVDFTTDLHSMGQYVQDGLRNLFETVIHVGKA + KKTITIKEDKDNIDGLNFLAGKEMAFVNNKAFEGTLLAHTDGGVPNLIVNVPELNEYY + FGNLVYFFEKACGISGYLLAVNPFDQPGVEAYKKNMFALLGKPGYEEEKKELEARLGK + " + gene 1757576..1758160 + /locus_tag="Ccel_1446" + CDS 1757576..1758160 + /locus_tag="Ccel_1446" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75800.1" + /translation="MDKSIKIKLSKNEKVKGALSDFTISYSSKKLDKKSVSNKIISAL + KGDDNIFIEIDSSLMTLDENNKDYLHSRLTDAFEHMGLAFIDKKISYDKKRSFLSIPI + ESKKIEGYRICVYADNNSWNNRELADVIPEHGVRYYISGLFNDLGSFTATDEGERLDK + CSMVIFDHVLLGSMGISSSKSKEEVKSLLNNNLL" + gene 1758259..1759533 + /locus_tag="Ccel_1447" + CDS 1758259..1759533 + /locus_tag="Ccel_1447" + /inference="protein motif:TFAM:TIGR01499" + /note="TIGRFAM: FolC bifunctional protein; + PFAM: cytoplasmic peptidoglycan synthetase domain protein; + Mur ligase middle domain protein; + KEGG: cth:Cthe_1384 FolC bifunctional protein" + /codon_start=1 + /transl_table=11 + /product="FolC bifunctional protein" + /protein_id="ACL75801.1" + /db_xref="InterPro:IPR001645" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR013221" + /translation="MHYEAALEYLHGTLKFGSIFGLDRITKLLDLMGNPHKKLKFIHI + AGTNGKGSTTAFISSILIEAGYRTGMFTSPYIQRFTERIKVDNNEISNDELAELISQI + KNCIEKMVSNGFEHPTEFEIITAASMEYFYKKKCDIVVLEVGLGGIVDSTNVIDTPEA + SVVTSISMDHMDRLGETLGEIAYQKAGIIKQDGVVVLYPQEQEAEEVIERVSKEKNAQ + IHKVDFSTIYDKGFSLSEQIFDYKDYRNIKIGLLGDHQMRNAAVAIDTCELLCNKGFA + LTHRNILDGLEKTRWPGRLEIINKNPLVLIDGAHNLEGGQALNTALDKYFTQKKKIFV + VGFLRDKDYIGIMDMLGNKADTIITVTPNNERAVPSAELAEILKSYSNHVVDGMSIEN + GLQTAVGLADSESVICAFGSLYMIGEIRGHYK" + gene 1759566..1760690 + /locus_tag="Ccel_1448" + CDS 1759566..1760690 + /locus_tag="Ccel_1448" + /inference="similar to AA sequence:KEGG:Cthe_1383" + /note="KEGG: cth:Cthe_1383 tetratricopeptide TPR_2" + /codon_start=1 + /transl_table=11 + /product="tetratricopeptide TPR_2" + /protein_id="ACL75802.1" + /db_xref="InterPro:IPR013026" + /translation="MDLKQEIRSFTPIDIEKLSQEKNVSENVVDSVKGYNKAIENLRT + GSEDIAMIELKKVVSVNPDFYDAVNLLGLCYAYTNQIDKAQELFSRVADAEVDSVKAA + EYLNYIGRGSASGKSVGSSKTVKSEAKPQKPAPKTKYAKPKQASNEEVQAEYILLRNL + GLQLKKPSVAITINILSVICLVAAIAVFMVNYKNTNGDNGPDTVVNTELTAKYNKVVA + ENEKLKKDLNAANFQLKQVQLSSQLSQVSTLYGQYKYIEAADKLLAIPEKDLSADNKK + KYDSIKANVLKNAANQLTIEGTSLYNKKKYKEAIQKLEKVFTLGTKWSFGDKALYTLG + KSYVAANEPQKGAEAYNRLISDYPDSAYVKYARSRLQSLQ" + gene 1760840..1761925 + /locus_tag="Ccel_1449" + CDS 1760840..1761925 + /locus_tag="Ccel_1449" + /inference="protein motif:PFAM:PF01734" + /note="PFAM: Patatin; + KEGG: cth:Cthe_1382 patatin" + /codon_start=1 + /transl_table=11 + /product="Patatin" + /protein_id="ACL75803.1" + /db_xref="InterPro:IPR002641" + /translation="MNKKSRTVNIVLSGGGIKGIAFAGAYEEIEKKYKRIGNVAGVSA + GALVGVLIGAGYTSRELGRIIKEFNYSSLSDMGEIPMDISIANSMRTIEKEKKVLNDS + DLETLLHRQDYAELHLVRKPKDDFVGSRGNFLINLIAFSKKNAFLNGELLENWVAQLL + ANKGVHTFSDFRGGIADKVNPRGYKVRMTAVDANTGKVIVLPDDMALYNIDPDKLEVA + KAVRMSTCVPFVFDPVTIDYKDAGNKPKTHYIIDGGVLDNFPVWLIDSTESNIIIGLK + LEGKEPKGLSSAEHILKKLLHSSHDTGVPKNSYNIDNIAHINTGEISFLDFDITAEES + MYLYNQGKLAVQKLFINMQKKTRGWRI" + gene 1762064..1763587 + /locus_tag="Ccel_1450" + CDS 1762064..1763587 + /locus_tag="Ccel_1450" + /inference="protein motif:TFAM:TIGR00260" + /note="TIGRFAM: threonine synthase; + PFAM: Pyridoxal-5'-phosphate-dependent protein beta + subunit; + KEGG: cth:Cthe_1381 threonine synthase" + /codon_start=1 + /transl_table=11 + /product="threonine synthase" + /protein_id="ACL75804.1" + /db_xref="InterPro:IPR000634" + /db_xref="InterPro:IPR001926" + /db_xref="InterPro:IPR004450" + /translation="MLYRSTRGSCRSVSAAEAIKRGIAADGGLFVPEKTVQFNLEQIA + LMSEMSYQERAVKILEGYLDDYTNEELLECVNKAYTAEKFETNDIAPLHKLYDSVNIL + ELWHGPTSAFKDMALQILPHFLVKALKKTGEKEEIVILVATSGDTGKAALEGFKDVIG + TKIIVFFPSEGVSQVQKMQMVTQEGSNVYAIAVDGNFDDAQNGVKRIFGDEDVTALME + EHGYKFSSANSINWGRLVPQIVYYFSAYADMIKNGEIKAGEKINFVVPTGNFGNILAA + YYAMQMGLPVNKLICASNDNNVLTDFINTGEYNKNREFKKTLSPSMDILISSNLERLL + YLITGDNAEKVCEWMNQLKNVGSYSVDQDTKKKIQSIFWAGYTNDSDTLKTIESVYQE + TGYVLDTHTAVAVDVYDKYVISTSDVTKAVIVSTASPFKFNDSVLKAIAGEEAIKGKT + EFELLSVLSEKSGLKIPAPLKELDKKPVLHKEFCEPINMIGKVKEALKIQENIKTAK" + gene 1763716..1764156 + /locus_tag="Ccel_1451" + CDS 1763716..1764156 + /locus_tag="Ccel_1451" + /inference="protein motif:PFAM:PF01842" + /note="PFAM: amino acid-binding ACT domain protein; + KEGG: cth:Cthe_1377 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="amino acid-binding ACT domain protein" + /protein_id="ACL75805.1" + /db_xref="InterPro:IPR002912" + /translation="MKQESIFFLVDSFILPDIFSKVIEVKKILSLGKIKTVNDAVKVV + GISRSAYYKYKDYVFPFNETSRGKVITLFFVVEDFSGILSSIINKIASANANILTINQ + NIPINGLADVTISIETLDMKIDIQNLLTEINKVEGVRRSEILAR" + gene 1764192..1765436 + /locus_tag="Ccel_1452" + CDS 1764192..1765436 + /locus_tag="Ccel_1452" + /inference="protein motif:PFAM:PF00742" + /note="PFAM: homoserine dehydrogenase; homoserine + dehydrogenase NAD-binding; + KEGG: cth:Cthe_1376 homoserine dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="homoserine dehydrogenase" + /protein_id="ACL75806.1" + /db_xref="InterPro:IPR001342" + /db_xref="InterPro:IPR005106" + /translation="MVNVAILGYGVVGSGVAEVIKKNSESISQRAGTDIKVKWILDIR + DFPDSPDKDVLTKNADDVFNDNEVSIIVETIGGAKIAHEFTKRALMAGKSVVTSNKEL + VATHGPELLQLAKENGVSYLFEASVGGGIPIIRPLNQCLAANEINGITGILNGTTNYI + LTQMKREGKSFEAALKEAQQNGYAEQNPTADVEGHDACRKIAILSSIAYNEFVDCENI + YTEGITKITVDDMKYADAIGGVIKLIAVSKKANGKIFARVSPAIVLNEHPLANVEDVF + NAIVVNGDAVGDAMFYGRGAGKLPTASAVVADVIDIAKHPGSGTASVWERTQQNNILP + IEDSTTKFLVRVTAKNKEDAKKDILSIFGEIQLVELHSKVKDNEFAFISCKNTESEFK + TKLDKLESASDITVLNRIRIEE" + gene 1765437..1765979 + /locus_tag="Ccel_1453" + CDS 1765437..1765979 + /locus_tag="Ccel_1453" + /inference="protein motif:PFAM:PF07155" + /note="PFAM: protein of unknown function DUF1393; + KEGG: csc:Csac_2314 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1393" + /protein_id="ACL75807.1" + /db_xref="InterPro:IPR009825" + /translation="MRIATKKLVLCALMTAIVFLITFAPFLQIPSPISQGYYNIGDTA + VMIAAILLGRRYGFVAGAFGSALADLARGSFIFVPITFIVKGIEGYIVGAIARGGEEN + QPSNLRKILAVSAGALEMVVGYFIFELVVIRMIDKSLSVIAIVTDLPGNLIQGALSAV + LALVFLTVLYRTKAVKKLLR" + gene complement(1766195..1767595) + /locus_tag="Ccel_1454" + CDS complement(1766195..1767595) + /locus_tag="Ccel_1454" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75808.1" + /translation="MNRFIMITNKQKLLILAISLMFIIISAVGITMLEFPKVPIKDNS + PKPENLSASQSENKRLKEILSSIVPADNKILYEDDFRKTSVSKNSSAFDGVKAANVQN + SGNSLLYTTIYCDEDYLRPIYVNSWKQAYYRGWLYLPRKIIYARHNLFTYSGNSANIF + DIEGELGFYPNISMDNENNINFLIYNFDLENAIKYNNRIVFYGKPVRKGVQIVAIKKE + DLDNYNESNGTIGVQLCTPAGYELDYQNVVLGKNEGATEDYGLDDDTIQTNIKNNSDL + AGQNTQLRQELTHYISDSSQEIYFQQNGGYQTSDVLDTNVDLEEAFNCSKPVAHKVLY + NNLKYKSPVYHPGWKKNYDIEWCYIPRKIYLNMKEIFVLPSDSDVVNDLYGELGFFEK + SPVISKKNTGLFIKNFSVDSVHLYENNIIVTGIPCRNGVQIISIPKAGLPKKADIAVR + LVTKDLCEIDADVLKN" + gene 1767945..1768253 + /locus_tag="Ccel_1455" + CDS 1767945..1768253 + /locus_tag="Ccel_1455" + /inference="protein motif:TFAM:TIGR02531" + /note="TIGRFAM: TrpR like protein, YerC/YecD; + PFAM: Trp repressor; + KEGG: cth:Cthe_1388 TrpR like protein, YerC/YecD" + /codon_start=1 + /transl_table=11 + /product="TrpR like protein, YerC/YecD" + /protein_id="ACL75809.1" + /db_xref="InterPro:IPR000831" + /db_xref="InterPro:IPR013368" + /translation="MNSKLRDEHTDSLFDAILLLKDREECYNFFEDLCTIAELKALAQ + RLQVAKMLREKRTYTEICEQTGASTATISRVNRCLVYGADGYNTVLDRLQEKDGQMNV + " + gene 1768246..1768653 + /locus_tag="Ccel_1456" + CDS 1768246..1768653 + /locus_tag="Ccel_1456" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75810.1" + /translation="MFKKLFLSIIILSALASENGVYNTADLFDLYLVNLSHLDMMQES + RNARSVSQSQKEDSLDKKGKPLSFFKEISEDAINRKVSNNNRHGELALLMSVSITILS + SLVLVYFISTIYKAFFSKRALLSQSDSSPPVCC" + gene 1768751..1771489 + /locus_tag="Ccel_1457" + CDS 1768751..1771489 + /locus_tag="Ccel_1457" + /inference="protein motif:TFAM:TIGR00963" + /note="TIGRFAM: preprotein translocase, SecA subunit; + PFAM: SEC-C motif domain protein; SecA DEAD domain + protein; SecA Wing and Scaffold; SecA preprotein + cross-linking region; + KEGG: cth:Cthe_1385 preprotein translocase subunit SecA" + /codon_start=1 + /transl_table=11 + /product="preprotein translocase, SecA subunit" + /protein_id="ACL75811.1" + /db_xref="InterPro:IPR000185" + /db_xref="InterPro:IPR004027" + /db_xref="InterPro:IPR011115" + /db_xref="InterPro:IPR011116" + /db_xref="InterPro:IPR011130" + /db_xref="InterPro:IPR014018" + /db_xref="InterPro:IPR014021" + /translation="MVKNFIEKIIGSYSDRELKRIYPIIDKAEAFESEIEKLTDTELK + AKTPEFKERLANGETLDDILPEAFAVVREASKRVLGMRHFRVQLIGGLVLHQGRISEM + KTGEGKTLVATLPVYLNALSGKGVHVVTVNDYLARRDSEWMGKIYNFLGLTVGLIVHD + MENEERRAAYNCDITYCTNNELGFDYLRDNMVIYKEDRVQRDLNYAIVDEVDSILIDE + ARTPLIISGMGDKSTDLYKRANSFATKLRAKVITQMDDKVDTDEVFDEDYIVDEKAHT + TVITSNGIKKAEQYFGVENLSDPENMTISHHVNQALKAHGLMKRDKDYVVKDGEVIIV + DEFTGRLMYGRRYSDGLHQAIEAKEGVKVERESKTLATITFQNYFRMYSKLAGMTGTA + QTEEGEFNTIYKLDVILIPTNKEMARKDHPDVVYKNEIGKFNAVIEDVVQCHEKGQPV + LIGTISIEKSEFLSTMLKRRGIPHQVLNAKYHDKEAEIIAQAGKLGAVTIATNMAGRG + TDIVLGGNAEYMAKQEMRKMGYDEELINASTSFNETTDELIHEAREQFRKLNDKFKAD + INKEREKVVEAGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYISLEDDLMRLF + GSERLTNIVNALGLEDDQPIEHRMLSNAIENAQKKVEGRNFDVRKRVLQYDDVMNKQR + EIIYAQRKTVLDGDNLKEYFIKMFESVIDGVISNYCTESEYSDGWDWPSIIAYLESVF + LPQGALELTDEDKNSMYKEDLKEKLMEIVHKIYEFKEMENTPDLMRELERVVLLRVVD + EKWMDHIDAMDQLRSGIGLRAYGQRDPVVEYKFEGYQMFEEMVKSIQEDSIRLLVRAR + IDREHAPQREKVAEPVTASHGDEPKKPVVNKGKVGRNELCPCGSGKKYKFCCGAGE" + gene complement(1771606..1772214) + /locus_tag="Ccel_1458" + CDS complement(1771606..1772214) + /locus_tag="Ccel_1458" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75812.1" + /translation="MEYTEDKINSFTGILRKAGLLSVDLIYRINYRLLFGSNLYYRHR + ISSFRSCAFCRNLNYNKAIRKYVCSYTEYEAYGSLVPCIIPDSYSRLVKKYSEEALQV + PWLFKNPCLNFDVLEPKHYFRNFLSLNMSSSIIKLETLEGILTGKCYGEIPCHICALV + SKETYTGCKYASRAKETGRCSIIYDNLKEYYTNYTTSMTNVS" + gene 1772420..1775899 + /locus_tag="Ccel_1459" + CDS 1772420..1775899 + /locus_tag="Ccel_1459" + /inference="protein motif:TFAM:TIGR00594" + /note="KEGG: cth:Cthe_1264 DNA polymerase III DnaE; + TIGRFAM: DNA polymerase III, alpha subunit; + PFAM: PHP domain protein; nucleic acid binding OB-fold + tRNA/helicase-type; DNA polymerase III alpha subunit; + SMART: phosphoesterase PHP domain protein" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, alpha subunit" + /protein_id="ACL75813.1" + /db_xref="InterPro:IPR003141" + /db_xref="InterPro:IPR004013" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR004805" + /db_xref="InterPro:IPR011708" + /translation="MGNFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGV + MYGVVEFYKEAVENGIKPILGCEVYTAKRTMQDKQPGIDSDYGHLVLLAKNQIGYKNL + MKIVSLGFTEGYYYKPRVDYETLERYSEGIIALSACLSGDIPSAILSNDYEKAVELAN + RLNRIFGQGNFYLELQHNGINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSH + EILLCIQTGKTINDDNRMRFNTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVEL + EFGKLHLPSFDVEEGYTPYEYLREQCYKGLKSRYGESCSEEIVHRLEYELSVISQMGY + VDYFLIVWDFIRYARDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPE + RISMPDIDIDFCYERRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPY + GDVDAIAKMIPFQIGMNIDKALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTH + AAGVVISKEPIVEYVPLQLNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDL + VEQGHGRKIDIQQIDFDDKDVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIA + GISLYRPGPMDQIPRYIRNKNNPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELG + GYSMGRSDLVRRAMSKKKISVMEQERKNFIYGITDEEGNEIVKGAVKNGVDEITANKI + FDEMMDFASYAFNKSHAAAYAVVAYQTAWLKFYYPIEFMAASINSFLGSSDKVSQYVN + ECKILNIKVLPPDINESNVKFTVINKNIRFGLAAIKNVGENAIKSVIVERQQNGEFKS + FLDFCQRIEGRDINKRCIESLIKSGAFDSLKVFRSKLMAVYERLLDGISQNRKKNMDG + QLSIFDMMSEPQELLQEDYPDIKEYPANVLLAMEKEMLGLYVSGHPLSEYQDILETNV + NLYSSEMFIDTDENSNDIELNSKKLQDSMKVTVGGIVVSKKTKATKNNNLMAFVGLED + LYGTMELIVFPTVYEKFSQLLQQESIIIVNGRLSMREDEQPKIIAEEVLPIKGLQEKG + LYLTLPEQLPREDGAALRALLRYFSGSTPTYIAKNNGNKFKKLDRQYWISVNNVIMEE + LDGRLGKKNVVLK" + gene 1775967..1776200 + /locus_tag="Ccel_1460" + CDS 1775967..1776200 + /locus_tag="Ccel_1460" + /inference="protein motif:PFAM:PF02081" + /note="PFAM: tryptophan RNA-binding attenuator protein; + KEGG: cth:Cthe_1263 transcription attenuation protein + MtrB" + /codon_start=1 + /transl_table=11 + /product="tryptophan RNA-binding attenuator protein" + /protein_id="ACL75814.1" + /db_xref="InterPro:IPR000824" + /translation="MDNLEDKLSGEYVAIKAGENGVTIIGLTRGRDTKFHHTEKLDKG + EVLLAQFTENTSAIKIRGKATVYCRYGTIQSGE" + gene 1776221..1776424 + /locus_tag="Ccel_1461" + CDS 1776221..1776424 + /locus_tag="Ccel_1461" + /inference="similar to AA sequence:KEGG:Cthe_1262" + /note="KEGG: cth:Cthe_1262 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75815.1" + /translation="MIMWTVVYMAQSKDVANQLQELLSNEGILVKLRPISKNHENNDN + YFEVLVPEAEVEEAHSVIIETGY" + gene 1776537..1776962 + /locus_tag="Ccel_1462" + CDS 1776537..1776962 + /locus_tag="Ccel_1462" + /inference="protein motif:PFAM:PF03061" + /note="PFAM: thioesterase superfamily protein; + KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase" + /codon_start=1 + /transl_table=11 + /product="thioesterase superfamily protein" + /protein_id="ACL75816.1" + /db_xref="InterPro:IPR006683" + /db_xref="InterPro:IPR006684" + /translation="MLYIDVPLTVRYAETDRMGIVHHSNYPVWFEVGRTEFIKQCGIS + YSYIESLGIMLPLLELHCKYINSSTYEDSIIVRTSIKSYSKTRLNFKYDVFKSDNTEH + PITTGETSHVWTTSDLKPINLKKHYPLLYEIIEKAAKEE" + gene 1777067..1777630 + /locus_tag="Ccel_1463" + CDS 1777067..1777630 + /locus_tag="Ccel_1463" + /inference="protein motif:PFAM:PF01066" + /note="PFAM: CDP-alcohol phosphatidyltransferase; + KEGG: cth:Cthe_1259 CDP-alcohol phosphatidyltransferase" + /codon_start=1 + /transl_table=11 + /product="CDP-alcohol phosphatidyltransferase" + /protein_id="ACL75817.1" + /db_xref="InterPro:IPR000462" + /translation="MRKYIPNVLTILRLIVVPFLGYFIYCEKYITAIILFAFGGFTDV + LDGYIARKYNLITKWGKVLDPLADKLMQITALVFLVLNKFIPLVVLVIVVVKEFLMLV + GGIMVYKKGRTVIGANWYGKLATVIFYFAILATIILKIVAGDSGYASNAISVAIGLAV + ACTLFALAMYISIYFKFSKDYNEKHNK" + gene 1777725..1778603 + /locus_tag="Ccel_1464" + CDS 1777725..1778603 + /locus_tag="Ccel_1464" + /inference="similar to AA sequence:KEGG:Cphy_0207" + /note="KEGG: cpy:Cphy_0207 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75818.1" + /translation="MFGYIMPEKPELKIKEFDIYRAYYCGVCKSIGKRHGQLKRMTLT + YDAAFLALLLCSVLNIKTSLTKERCMVHPLKKSFVTRNEIIDYSSDINIVLAYNNMKD + KWNDDKSKIALAGMAAFKRTYGKLVVEYPQKCAIINQRLSDLSILEKEKCNSIDAASE + PFAKLMEEVLDYERLDDKTRQILRWMGYNIGKWIYLVDAFDDMEEDVKNSSYNPFIVQ + FKYTGQDLAIFKNDIKSQAEFTVLYCLQEASKAFELLSLKENKGILENILYIGMLSKT + DKILCQRSCGKGEKSI" + gene 1778587..1779228 + /locus_tag="Ccel_1465" + CDS 1778587..1779228 + /locus_tag="Ccel_1465" + /inference="protein motif:PFAM:PF00226" + /note="PFAM: heat shock protein DnaJ domain protein; + KEGG: cno:NT01CX_1376 molecular chaperone" + /codon_start=1 + /transl_table=11 + /product="heat shock protein DnaJ domain protein" + /protein_id="ACL75819.1" + /db_xref="InterPro:IPR001623" + /db_xref="InterPro:IPR013026" + /translation="MKNPYEVLGVNEGASEEEIKKAYREQVKKYHPDQYHDNPLSKLA + EDKLREVNEAYDYLTGKGQSAKSSNGWSGRSGSAAPAGSAGASGRNAGGDNFRQVRMY + INNGNIGAAESLLESIQNRNAEWFYLRGLVFMKKGWYNEAMMNIRQAVNMDPSNYEYR + DALNRINANNNMYRGNAANRGYGAGPSFCDMCTCLWCSDSMCECCGGDLISCC" + gene 1779267..1779782 + /locus_tag="Ccel_1466" + CDS 1779267..1779782 + /locus_tag="Ccel_1466" + /inference="similar to AA sequence:KEGG:NT01CX_1375" + /note="KEGG: cno:NT01CX_1375 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75820.1" + /translation="MNNATRVKKITLSGILLGFTVICVFLASVLPTSRLSLYAISSLF + TAIIIIEFGTKAGWTFYAASAVLSAILIPRLEVLPYVVFFGVYGLFKLYFEKLKSRVL + EYLLKFAYFNICLCLGFIFLKEFIMAGVELTAPVYIVAALMEIVFLVYDYVYTLFIRF + YSSTLKPKLKI" + gene 1779902..1780192 + /locus_tag="Ccel_1467" + CDS 1779902..1780192 + /locus_tag="Ccel_1467" + /inference="similar to AA sequence:KEGG:Cthe_1017" + /note="KEGG: cth:Cthe_1017 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75821.1" + /translation="MSPAFSYSIAVFIIIFIAGFAVNLLKKHYIFQLLGIAFFFTYIT + ISTAIYIERTAETSFRAIFYRSMPSLFGISACLVSMTLGFWLYPVLRKKIRH" + gene 1780297..1780845 + /locus_tag="Ccel_1468" + CDS 1780297..1780845 + /locus_tag="Ccel_1468" + /inference="protein motif:PFAM:PF07883" + /note="PFAM: helix-turn-helix domain protein; Cupin 2 + conserved barrel domain protein; + KEGG: cth:Cthe_0552 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75822.1" + /db_xref="InterPro:IPR001387" + /db_xref="InterPro:IPR013096" + /translation="MNEKVKDIAVRIKGLRLLAGYTEEEVADQLGIKLDQYKLYENAE + DDIPVSLLYELAEIYKVNITEILTGTSPKLHDICHVKKGEGLKVERYDQYSFESLAYK + YSNRKIEPMLVVLDPGNSPEMVSHKGQEFNYCLEGKMQVLIGKEKFELEPGDSLYFNS + LLPHKQLALDGKEARFLTIILL" + gene 1780911..1782590 + /locus_tag="Ccel_1469" + CDS 1780911..1782590 + /locus_tag="Ccel_1469" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: cth:Cthe_0551 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL75823.1" + /db_xref="InterPro:IPR000873" + /translation="MSLETRYLNKTDFESYEDFRENFRLNVPSNFNFAYDIIDEYARL + EPDRLALVWCDDHGNEKKFTFGDLKYWSDKTANYLIASGLGKGDKVMLILRRRYEFYF + FAFAAMKIGVTFIPSTNQLMKKDIVYRNNAAEVKAIVAYNDPAIIEHVENSMEDSPTV + KKYIMVGGTKDKWLDYDKEIEVCSNNWIRPDREMGTRNKDHMIIYFTSGTTSMPKMAV + HDFTYPLGHIVTAKYWHRVVENGLHLTVADSGWAKFAWGKLFGQWICGAVQFLYDMDR + FDPCNLLEKIEKYQVKTFCAPPTIFRFMLQHDITKYDLSSLTHCSTAGEPLNPEIFNR + FKKLTGHEILNGFGQTETTVIVANYEWLSVDPGAMGMPNPAYNIDVVDEEGNSCQVGV + EGELVIRDVDTNKPAGLFCGYYKDPESTARVWYNNTYHTGDVVYKDEHGYLWFVGRND + DVIKASGYRISPFEVESAVIEHPSVVECAVTGAPDSIRGTVVKATIVLAKGYQPSEEL + KKEIQNYVKKVTAPYKYPRIIEFVDELPKTISGKIKRAQLRQDDHKKFESS" + gene 1782650..1785028 + /locus_tag="Ccel_1470" + CDS 1782650..1785028 + /locus_tag="Ccel_1470" + /inference="protein motif:TFAM:TIGR01069" + /note="KEGG: cth:Cthe_1014 MutS2 family protein; + TIGRFAM: MutS2 family protein; + PFAM: DNA mismatch repair protein MutS domain protein; Smr + protein/MutS2; + SMART: MutS III domain protein" + /codon_start=1 + /transl_table=11 + /product="MutS2 family protein" + /protein_id="ACL75824.1" + /db_xref="InterPro:IPR000432" + /db_xref="InterPro:IPR002625" + /db_xref="InterPro:IPR005747" + /db_xref="InterPro:IPR007696" + /translation="MNEKTHRVLEFDKILDKLKGLTASELGRELVLELTPQTDYRVVE + KMLSETNDGVSCIMRRGSPPLGGITDIRMSLKRLDMGGVLNPGELLRLAGVLRAARRL + KGYINDKLDENNASVVKELISCLESNQRLEQKIDNCILSEDEIADNASPALSSIRRQI + KEQQASIKDKLNSIIRSTKYQKYIQESVVTMRGDRYVIPVKQEHKGDIPGLVHDSSAS + GATLFIEPMAVVEANNSIKQLRVKEQTEIDRILAELSQDASLVLPQLNANMSIMARLD + FIFAKSKLAIDYNCICPKINDTGKIIIKKGRHPLLDPKIVVPIDFWIGEKFSSLIVTG + PNTGGKTVSLKTVGLFTLMMQSGLLVPANDGTEMSVFEKIYADIGDEQSIEQSLSTFS + SHMKNIVDILSGVNNKSLILLDELGAGTDPTEGAALAMSILECLHQMGATTLATTHYS + ELKVYAISTTGVENASCEFDVETLRPTYRLLIGVPGKSNAFAISKRLGLTDDIIERSK + EFLSQEDIRFEDILLSIEKNRSEAEKEKMRAESYRQEAERLKKDLEDQKRRLAAQKES + ELRKAREEARRILTDSKRQADELVSEMKRLAKEQEEAEVRRQTEELRQKLNKSINNLD + DSLVESIMPRQGLVKPPKNLKPGDTVLIVNLNQKGTVLTLPDKNGEAQVQAGIMKINV + HISNLKLVDEQKQQIQRTGMGKIGVSKAQNMSTEIDLRGMMLSEAVDVVDKYLDDASI + AGMGGVTLIHGKGTGALRAGLHQHLKHNPHIKSFRLGKLGEGENGVTVVELK" + gene 1785202..1787019 + /locus_tag="Ccel_1471" + CDS 1785202..1787019 + /locus_tag="Ccel_1471" + /inference="protein motif:TFAM:TIGR01394" + /note="TIGRFAM: small GTP-binding protein; GTP-binding + protein TypA; + PFAM: elongation factor G domain protein; protein + synthesis factor GTP-binding; elongation factor Tu domain + 2 protein; + KEGG: cth:Cthe_1007 GTP-binding protein TypA" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein TypA" + /protein_id="ACL75825.1" + /db_xref="InterPro:IPR000640" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006298" + /translation="MDIRQDIRNIAIIAHVDHGKTTMVDAMLRQSGIFRENEAVAERV + MDSNDLEKERGITILAKNTAVNYNGIKINIVDTPGHADFGGEVERVLKMVDGVLLLVD + SFEGAMPQTRFVLKKALQLNLKPIVVVNKIDRPEARPEEVVDEVLELFIELGADDDQL + EFPVIYASSREGFAVCDLGGERRDLKPLFDIIIDKVPSPRGELDGTLQLLVSNIDYDE + YVGRIAIGRIERGSIKLGQQAIICKKEGNQLNAKISKLYSYDGLKRIETAEAKLGDIV + AVSGVGDVTIGDTICEVGSPDPLPFIAIDEPTLSMTFSVNNSPFAGKEGTFVTSRHLR + DRLFKELETNVSLKVEETDSPDAFVVSGRGELHLSILVETMRRQGYEFQVSKPTVINK + EIDGVLMEPIEYLMIDVPEEFMGTVMEKLGQRKSEMANMTSANQGYMRLEFRIPARGL + IGYRSELLTDTKGNGIMNHVFHGYEPYKGEIPTRTRGSLVAWEDGEAVTYGLYNAQER + GTLFITPGTKVYEGMVVGENARNDDLVVNVCKKKHVTNMRASGSDEALRLTPPTILSL + EQALEFIAEDELVEITPKSIRLRKKVLGTESRAKIRSKM" + gene 1787108..1788382 + /locus_tag="Ccel_1472" + CDS 1787108..1788382 + /locus_tag="Ccel_1472" + /inference="protein motif:PFAM:PF02618" + /note="PFAM: aminodeoxychorismate lyase; + KEGG: cth:Cthe_1008 aminodeoxychorismate lyase" + /codon_start=1 + /transl_table=11 + /product="aminodeoxychorismate lyase" + /protein_id="ACL75826.1" + /db_xref="InterPro:IPR003770" + /translation="MDRRLKVSLTGILTVIIGVLLSVPNIMNYFKTLLRGFDAKFGLL + NAVLTAVGLTLFLFGLFIISAGLRKLSFWLTILIVFVFIFTVGAVITFRNTVSTDVSE + TVTEEIKIKADSEGAKMIDIPMGSDTKTIAGILTNEGIINKPQIFTVVSKINGFDGKY + QAGTHILKPGLEFNSIMTILTGKPESKKVTIPEGLSYRQIVNTFVKKELATTDKFDYA + MKYEKYDYDFVKNMKSSNNREFQLEGYLFPDTYEFAMNASEKTIVSIMLENFNNKITK + EHYKRAKELGMSMDEIITLASIIEREANNTKDRRLVSAVFHRRLKSRDLNRLQSCATI + QYVFLNKEGKVHEKLTYEDTKIISPYNTYIHPGLPPGPICSPGMDSINAALYPDEDTD + YMFFIAGPEGSTKFSKTYQEHLKAMKQYGLAK" + gene 1788487..1789128 + /locus_tag="Ccel_1473" + CDS 1788487..1789128 + /locus_tag="Ccel_1473" + /inference="protein motif:PFAM:PF01596" + /note="PFAM: O-methyltransferase family 3; + Methyltransferase type 11; + KEGG: cth:Cthe_1009 O-methyltransferase family protein" + /codon_start=1 + /transl_table=11 + /product="O-methyltransferase family 3" + /protein_id="ACL75827.1" + /db_xref="InterPro:IPR002935" + /db_xref="InterPro:IPR013216" + /translation="MINYEYITQYIRETIKPSTGLLAELEEYALKNHVPIIQPEVAAL + LKVIGSMKRPARILEVGTAIGYSSILFSGFMQQKGIIDTIERNEEMIELARKNIKRAG + LQGNINVIAGDASEVLACLDKSYDMIFIDAAKGQYGEFFEHCKRMLASGGILVSDNVL + YKGMTASDDLVVRRKRTIVNRMRSFLKELCEDESFETGIIPIGDGVALSYKKQ" + gene 1789155..1790375 + /locus_tag="Ccel_1474" + CDS 1789155..1790375 + /locus_tag="Ccel_1474" + /inference="protein motif:PFAM:PF01136" + /note="PFAM: peptidase U32; + KEGG: cth:Cthe_1010 peptidase U32" + /codon_start=1 + /transl_table=11 + /product="peptidase U32" + /protein_id="ACL75828.1" + /db_xref="InterPro:IPR001539" + /translation="MKKVELLAPAGNLEKLKMAIMYGADAVYIGGQKFGLRASADNFS + LEDIKAGLVFAHDRECKVYVTVNIIPHNEDLVGLPEYIRQLDELGVDALIVSDPGIFD + IVRENAPDMEIHVSTQANNTNYASAMFWYRHGAKRIVTARELSLIEISEIKEKIPDDL + DLEAFIHGAMCISYSGRCLLSNYMAGRDSNRGACSHPCRWKYHLVEEKRPGEYYPVYE + DEKGTYIYNSKDLCTIEYIPELVKAGIYSFKIEGRMKSSFYVATVVSAYRQAIDAYMA + DPENYRFDPEWLKELSKASHREYTTGFYFNKTSGADQIYNTSSYIREYDFVGVVLEYD + KETGIAKIEQRNRMIVGDEIEVVSPRKGYFTQTIKEMKNEDGESIRTAPHAQMIVYMP + MDQEVGPYSILRRK" + gene complement(1790442..1791425) + /locus_tag="Ccel_1475" + CDS complement(1790442..1791425) + /locus_tag="Ccel_1475" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_4766 putative cell wall binding + repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75829.1" + /translation="MKLFKKVLSGITLLAVVSTLLAVTPVSVNALTEGDIDNSQLITI + GEKLKSSVADDSVTWFKFTTSSTKEPWYRIGCIYKDESNYGPHMYLYNEEGEELFEKG + INDGVDNFNHIKLDPNTTYYVRINFAENTDYTVYVDEIKDDISDNEENAVSLFSGIKA + NGKFECVNDADTYTFSAGSSKTTISASLKYKDNRANIKVFDEDGQSLLSEFIYDATPK + TYTINTVKGQKYSVIYSAVEPSFDIVKYAGTYTLTVKSGSSDIKYLAMDSVFNKATQD + VYLFNGKVRLTKGIDYTVSVGRISAGKTTVTIKGKGTYTGTITKTCYVAGN" + gene 1791651..1793837 + /locus_tag="Ccel_1476" + CDS 1791651..1793837 + /locus_tag="Ccel_1476" + /inference="protein motif:TFAM:TIGR01587" + /note="KEGG: drm:Dred_1002 metal dependent + phosphohydrolase; + TIGRFAM: CRISPR-associated helicase Cas3; metal dependent + phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + DEAD/DEAH box helicase domain protein; + SMART: metal-dependent phosphohydrolase HD region; + DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL75830.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006474" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MFAAHIREDGTKQSVKEHLLNTAVKARDFAHPFNGDDYAYTAAL + LHDIGKYSNEFQNRILKGGKKCDHSTAGAKEIVKINKSGRLIAYCIAGHHSGLPNYGS + VSDVGIEGTLNARLNKVAIPRYDRFFDEIETINLPVMPNIKLTKNTNIGFILSFYIRF + IYSCLVDADFLDTEVFMSNNSVDRTANYDFYLFRKKLNKKLSSFKTDTMINRYRKKIL + DACIEKAKLKRNLFNLTVPTGGGKTLSSLAFAVNHLIKNSMDRIIYVIPYTSIIEQTA + REFKNIFGEENVLEHHSNFDFDDDENSIKNKMRLSSENWDMPFLVTTNVQFFESLFSH + KSSRCRKLHNIANSIIIFDEVQILPIDYLKPCIEAIKQLVLNFNSTVVMCSATQPPFD + KLFGELEPIEICDNHAELYNAFKRTNVKTHGVINSSNLAKEMNNIEQVLCIVNTRKHA + LKIFSMLEEQGSYHLSTLMCPVHRKEVINTIKERLREGLTCRVCSTRLIEAGVDVDFP + LVYRAMSGLDSIVQSAGRCNREGKLMAEEKLVYGEVHVFYPEDEFVQHQPEAFKRPTM + VTESIMRNFDDITSPRAICTYFEELFEITGDGLDFKKILERLESDVTNFNFSFQDISR + DFKLIEDTAIPVIIPYDDKACTLIEKLKYSDYKSGILRSLQGYTVTIYKNEYDNLFGM + GALDFITNGEINNKDIAILKRDSFNHLYDKNTGLKVTEETGIAIYI" + gene 1793850..1794506 + /locus_tag="Ccel_1477" + CDS 1793850..1794506 + /locus_tag="Ccel_1477" + /inference="protein motif:TFAM:TIGR01876" + /note="TIGRFAM: CRISPR-associated protein Cas5 family; + CRISPR-associated protein Cas5; + KEGG: drm:Dred_1003 CRISPR-associated Cas5 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas5 family" + /protein_id="ACL75831.1" + /db_xref="InterPro:IPR010155" + /db_xref="InterPro:IPR013422" + /translation="MGFGIKLEVWGEYALFTRPEMKVERVSYDVITPSAARGIIEAIY + WKRAIKWVIDKIHVCNKIQFTNIRRNEVSIKIAKSNAKALMDGTKTNDYINTNEQRQQ + RASLVLKDVRYVIEAHFELTDKAGGDDTVEKHYNIALRRMRQGQCYHTPCFGCREFPA + KFRLVEDDSIKTHYSGEQDLGFMLYDMNFSDSDNIHPIFFRAKMADGVIDLKNIAKVG + " + gene 1794547..1797592 + /locus_tag="Ccel_1478" + /pseudo + gene complement(1795899..1796945) + /locus_tag="Ccel_1479" + CDS complement(1795899..1796945) + /locus_tag="Ccel_1479" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75832.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene 1797595..1798479 + /locus_tag="Ccel_1480" + CDS 1797595..1798479 + /locus_tag="Ccel_1480" + /inference="protein motif:TFAM:TIGR02589" + /note="TIGRFAM: CRISPR-associated protein, CT1132 family; + CRISPR-associated protein, Csd2 family; + PFAM: CRISPR-associated protein TM1801; + KEGG: drm:Dred_1005 CRISPR-associated Csd2 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein, Csd2 family" + /protein_id="ACL75833.1" + /db_xref="InterPro:IPR006482" + /db_xref="InterPro:IPR013418" + /translation="MSEIIKNRYEFTVLFEVKNGNPNGDPDAGNMPRIDPETGYGIVT + DVCLKRKIRNYIETVKADSTGYKIYIKDGVPLERSDREAFTYFGISDEKEAQSKKEEV + DIKIKDFMCKNFFDIRTFGAVMTTFVKAKLNCGQVRGPVQLGFARSIDQIVQQEISIT + RVVATTEKDAAKKETEMGRKYIIPYALYRVDGYISANLAQKTTGFNEDDLSMLWDAVI + NMFEHEHSAARGNMSVRELIVFKHDSEFGNCPAYKLFDAVSVCRKDKSNPPRCFDDYS + VDIDEKAIPSGVEVIRKI" + gene 1798476..1799144 + /locus_tag="Ccel_1481" + CDS 1798476..1799144 + /locus_tag="Ccel_1481" + /inference="protein motif:TFAM:TIGR00372" + /note="TIGRFAM: CRISPR-associated protein Cas4; + PFAM: protein of unknown function DUF83; + KEGG: amt:Amet_1666 CRISPR-associated Cas4 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas4" + /protein_id="ACL75834.1" + /db_xref="InterPro:IPR002785" + /db_xref="InterPro:IPR013343" + /translation="MTEYNEEDFLLLSGIQHFAFCRRQWALIHIEQQWQENLRTVEGN + ILHEKAHDDGFSEKRGDVIISRGMAVFSRTLGVSGVCDIVELHKCADGVNIFGRDGLY + RPVPIEYKRGKPKENDADILQLCGQAMCLEEMLLCEIKEAYMFYGETKHRLKITLDND + LRERVRDVIQEMHELFKRKYTPKVKPSKSCKACSLADICMPRLCKNPSVSKYIRDSLK + EAEQ" + gene 1799141..1800172 + /locus_tag="Ccel_1482" + CDS 1799141..1800172 + /locus_tag="Ccel_1482" + /inference="protein motif:TFAM:TIGR00287" + /note="TIGRFAM: CRISPR-associated protein Cas1; + PFAM: protein of unknown function DUF48; + KEGG: amt:Amet_1667 CRISPR-associated Cas1 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas1" + /protein_id="ACL75835.1" + /db_xref="InterPro:IPR002729" + /translation="MRKLLNTVYITSPDSYLSLDGENLVVFKGNTEAVRLPLHNLESI + IAFGYTGASPALMGACAKRNISLSFMTQNGKFLARVVGEVRGNVTLRKVQFRLSDNME + ESTKIARNFIFGKIYNGRWVIERATRDYSERLDVNKLKRVSEGLAKALNLVLNCENLD + ELRGFEGEAATQYFSVLDDLILQQKDKFFFHGRNKRPPLDNVNAMLSFVYTLLAHDTA + ATLETVGLDPYVGFMHRDRPGRISLALDLMEEMRSVYADRFVISLINKRVINDSGFTQ + KEDGAVIMDDDTRRTILQAWQSRKQEKITHPFLQEKLEWGLVPYAQAMLLARFIRGDL + DEYPPFLWK" + gene 1800182..1800472 + /locus_tag="Ccel_1483" + CDS 1800182..1800472 + /locus_tag="Ccel_1483" + /inference="protein motif:TFAM:TIGR01573" + /note="TIGRFAM: CRISPR-associated protein Cas2; + PFAM: protein of unknown function DUF196; + KEGG: amt:Amet_1668 CRISPR-associated Cas2 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas2" + /protein_id="ACL75836.1" + /db_xref="InterPro:IPR003799" + /translation="MMVLITYDVNTESDGGKKRLRRVAKQCINYGQRVQNSVFECVMD + AAKCREVKNKLEKIIDKEKDSLRFYYLGNNYQNKVEHIGTKDSFDVEGTLII" + gene complement(1801077..1801889) + /locus_tag="Ccel_1484" + CDS complement(1801077..1801889) + /locus_tag="Ccel_1484" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75837.1" + /db_xref="InterPro:IPR001584" + /translation="MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRET + YGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTRKKFKATTNSNHNYPVADNILNQ + DFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ + AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRAEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(1801937..1802221) + /locus_tag="Ccel_1485" + CDS complement(1801937..1802221) + /locus_tag="Ccel_1485" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75838.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene 1802971..1804626 + /locus_tag="Ccel_1486" + CDS 1802971..1804626 + /locus_tag="Ccel_1486" + /inference="protein motif:PFAM:PF00905" + /note="PFAM: penicillin-binding protein transpeptidase; + Penicillin-binding protein dimerisation domain; + KEGG: cth:Cthe_1011 peptidoglycan glycosyltransferase" + /codon_start=1 + /transl_table=11 + /product="penicillin-binding protein transpeptidase" + /protein_id="ACL75839.1" + /db_xref="InterPro:IPR001460" + /db_xref="InterPro:IPR005311" + /translation="MTKRIKTILFIFMAIFSLLVTRLFYLQVIMGPGYSNEASSQRIN + NIQIENSRGDFLDKNGIKLTGRTPKVTVVLKPSLLRGQNEVVDNICQILGLDSEKTKE + AIQRKNTPILMEVDSETKTVLSQLNNEGISFVNTLSRYNTDTKAKHLLGYLNKVDQVG + SFGLEKVYEKTLNYGKGDSIGVITDAGNNLLGGLGYRIIEEDSNKKKLDIRLTINYHI + QSIIEKVLDEKGMTGAIVVENVATGDIVGMCSKPDFDPNDIENYLLNNKKPLFNRAVA + QYNIGSVFKLIDLAAIFEKDQDYNMVFNCPGYIQIGDTEFKCSSYNTGGHGTVDINNA + LAKSCNAYFINMSLDLGAEPIISMCDKFGLGKATGLSKQGIEEAKGVIPTITDLKNPG + DIANVSIGQGQTMATPVQIADMIAIIANGGVKNNVNVIDCIVNEEGNKVRDLKEIEQK + RVLSKSTSDKIKNLMEGVVNTGTGKKASIDEYGGAGGKTGSAETGQYVDGQKIVQAWF + AGYFPAKSPKYSVAVFIEDGRSGGESAAPIFAEIGKEIMKKGL" + gene complement(1804706..1805413) + /locus_tag="Ccel_1487" + CDS complement(1804706..1805413) + /locus_tag="Ccel_1487" + /inference="protein motif:PFAM:PF02557" + /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /codon_start=1 + /transl_table=11 + /product="peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /protein_id="ACL75840.1" + /db_xref="InterPro:IPR003709" + /translation="MHSVKFKHPDQAYIFPKLLEAVNRVCNDYQKDAVCSSGYRSPEC + QKVTAKLVLAQNKGSYQLRDGSVYIGMGNNRKCLAAAYGKSNHCFCIAMDITGWFEAL + TNRQLKKYGLYKPMSYEPWHVQLIEHTEISTEQKIAIRDSCLKGGNCTMNVKEFQTIT + GLVNDGIPGPKTQCKAKEVLQLCQEILGNDFKCAEDIIKRTQNNPDYWLPKLKEIKYF + DSFIMNIVKVLGCKDNR" + gene complement(1805406..1805702) + /locus_tag="Ccel_1488" + CDS complement(1805406..1805702) + /locus_tag="Ccel_1488" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bcl:ABC2817 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75841.1" + /translation="MQLNILITCVAAVCGIIFGYITMQARIKGESKQSGIEAGQLKAD + IDYIKRSSDTTLLEIRCLNNTVSNHADRLARVEESTKQAHLRINEIREDLVKDA" + gene complement(1805993..1806157) + /locus_tag="Ccel_1489" + CDS complement(1805993..1806157) + /locus_tag="Ccel_1489" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75842.1" + /translation="MVKKAQQGDKEAMDKILELFTPDIDYLSRYIMLPREDAIQTLKT + ELMSIIYFKL" + gene complement(1806160..1806510) + /locus_tag="Ccel_1490" + CDS complement(1806160..1806510) + /locus_tag="Ccel_1490" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tte:TTE0428 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75843.1" + /translation="MYTNDDISVENCRKLLRRAAWRIQYKARVQQAKECQIIFENQAY + NCGFEAEIMSKLYVKELLDTIPWEKCRFILEKTIIYEMTEKEVAIELHMTQQGVNKWK + KKGLELLRKNLMDF" + gene 1806830..1813864 + /locus_tag="Ccel_1491" + CDS 1806830..1813864 + /locus_tag="Ccel_1491" + /inference="protein motif:PFAM:PF00942" + /note="PFAM: type 3a cellulose-binding domain protein; + Hyalin; + KEGG: LOC587453; similar to hyalin" + /codon_start=1 + /transl_table=11 + /product="type 3a cellulose-binding domain protein" + /protein_id="ACL75844.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR003410" + /translation="MFLKYKKAIGGVQMKEEKSPFKAKSKSISMLHRWVCYILLGVLS + FSLAVVLSDGETYSAESSGAALYAVSPLNQQMMLSQPSPAVTGGRGFMMPLTVIAKDA + EGKPLAGIPVTFEVSESKKVIAQMRGSESRFITTTTDINGMASCVNTYTGYVGEGYQL + YSLLAGSIENLQVKANVPGWNTVTFTVQVGTYGANLVDITPPLMTVSAKDDTGAAYIA + GKWTNHTVTVYYEAKDTMSSIKSCTPEQVFSVDGANMTSTGTAVDSANNSSTLTFGPI + CVDKSAPSTTAILPKPIALGWHQKNITINFDGMDSYSGVEYIYYRIGNGEEIKLPGPS + ASVVVESEGIEDIYYYSVDKAGNKESIKTISTKLDKSAPILECKINPESNEDGWNDTN + VTVNLKTSDLYSGVRELHYKIGETGIENIIQGTQASFTVNSEGITDVIYWAVDNVGNI + SPQKCTQVKIDKTNPAVYPPKDITVEATAVKTPLDIGVATVEDMSEFELTNDAPADGF + PVGTTTVTWKARDKVGNMTSAVQTITVKDTIAPVLTVQGDIVVEAAGVGTKVSLPPAK + ATDVFPVAISNDAPEEFPVGETTVTWTAEDANKNITKATEKVIVIDSTKPVLTVPENM + TVEAIGRRTPVNIGQALATDIFKVDITNNAPADYPVGKATVTWKATDANGNVTTKDQI + IIVQDTKAPDLVIPKDITIEASDRNMVLDIGQATATDIFNVTVISNAPEYYTVGTKPV + VWQATDENGNITTKVQNITVTDTTKPVIKPLADIKVEATGILTPVQIQLPEVYDIFPV + VISSNCPETKLFTIGTTTIKWKVIDENGNESIVEQHITVEDTTKPLLTVPKDIKVEAT + GIRTPVNIGQAVASDIFSVNIKNNAPDDYSIGTTKVIWTATDANGNITIGYQNVTVED + TTKPVLSVPGDKKVEATAIRTHVDPGIATAKDIFPVTIKNNAPTDYPIGSTPITWTAT + DENNNEDTKIQSITIVDTTKPLLIIPADITIEATQVRTPLDIGKAEAKDIFPVKVENN + APVDYPVGITKVVWKATDANGNVSEALQNIIVKDTTKPVLTVPNDITLEATAKLTPVD + IGKADAKDIFPVEIKNNAPEAYRLGTTVVTWTATDANGNTITKTQNITITDKTCPNLE + VPEDITIEATAVNTPVEIGEATATDIFEVNVSNNKLESYPVGTTEVTWTATDANGNVT + TKVQKVTVQDTTSPELEIPQDITIEATAVNTPVEIGEATATDIFEVNVSNNKLESYPL + GTTEVTWTATDANGNVITKVQKVTVQDTTNPELEIPQDITIEATAVNTPVEIGEATAT + DIFEVTVSNNKLESYPVGTTEVTWTATDANGNVTTKVQKVTVQDTTNPELEIPQDITI + EATAVNTPVEIGVATATDIFEVNVSNNKLESYPVGTTEVTWTATDANGNVTTKVQKVT + VQDTTNPELEIPQDITIEATAVNTPVEIGEATATDIFEVNVSNNKLESYPVGTTEVTW + TATDANGNVTTKVQKVTVQDTTNPGLEIPQDITIEATAVNTPVEIGEATATDIFEVNV + SNNKFESYPVGTTEVTWTATDANGNVTTKVQKVTVQDTTNPGLEIPQDITIEATAVNT + PVEIGEATATDIFEVNVSNNKLESYPVGTTEVTWTATDANGNVTTKVQKVTVQDTTNP + GLEIPQDITIEATVVNTPVEIGEATATDIFEVNVSNNKLESYPVGTTEVTWTATDANG + NVTTKVQKVTVQDTTNPGLEIPQDITIEATAVNTPVEIGEATATDIFGVNVSNNKLES + YPVGTTEVTWTATDANGNVTTKVQKVTVQDTTNPGLEIPQDITIEATAVNTPVEIGEA + TATDIFEVNVSNNKLESYPVGTTEVTWTATDANGNVTTKVQKVTVQDTTKPVMSVPQD + IISEATAVNTPVEIGEATATDIFEVTVSNNKLESYPVGTTEVTWTATDANGNATTKVQ + KVTVQDTTKPVMSVPQDIISEATAIRTPVEIGKATAIDIFHVDITNDGLLDYPLDITK + VTWTATDENGNITTGYQNITIRDTTKPKLTVPANITVEATAVRTPVSIGRATAIDIFP + IMLLNDAPKDYPIGKTTVTWMARDINGNESQAEQYITIKDTTPPVLKIPADITVAATG + SRTKVLIGTATATDIFGANVSNDAPADFPVGKTAVTWTATDANGNITKAVQYINVVQK + YVVKSFNATTSATTNSIDPRIMFENTGKTEFKLSDLKIRYYFTSDSDKDQSYWCDYAE + IKGASGQRNITSSVKGSSVLFTGTQCDHYIEITFSGSTETLKPGESVLVQGRFSKADW + SNYTQTNDYSFNPTAKDYTETSKITVYSSGNLIGGIEP" + gene 1813945..1817976 + /locus_tag="Ccel_1492" + CDS 1813945..1817976 + /locus_tag="Ccel_1492" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cau:Caur_2163 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75845.1" + /translation="MSPVITAQKQKENTTGVKSNNIQGYAGSRKPVARKADVVEIIHR + LKKDPDSLKRDDVVVLQSTIGNKALGKMLTDLKTKKEQKKDEQGKNKVGAVKSLNGTV + AKVEKTKVPDIKVEEKPQKAAPEVSKKTEKQQTNNDNATVDKSIVQSQKKNKNNPVLA + QSPQKTYIEKESQEVVSQKKKDKVKETSAPAKSESTTSNKITSGFGGTVKSQNEAPTK + KAPAKAPVIKINSEDPGKILNSLGSVPPTEIVNAFSQASSVSETAFEKQKIKTQAKIP + VIPTPTGLPSKKGPAKVVNKVKELAHSAISSFKSEKSGGKACEGMPENIKIREGDDVD + ADDIMQEAKEYTKNAPEIGMTGEADPNQMEGFMNEASQNAGNAKQAELNQTKQDFGEN + AIAPQEDPTTIKADKAIGGVLPFGVDINKQAPISPEVASRVNPQLNSQLKSFMQGKEN + EFQKGKTQFDSGISNAKVNADAQIENHKVEARRSQLKEQENTKSEVGGLREQWKNEIS + TATEEYEKDAGAETEKKKKEVGKIKDEKEGEVKKTLKDAEKDADKECKTAKKDADEEK + KKQEEKPKSLAGKIWGGIKKVGKAIVDGISKAVSFIFDKLRQAVKTIFEKAKQLAVGI + IEAGRRLIVSAIKGLGTVLKGLVKTLLAKFPGIANKICNLIDKAVNKAVAAVNKAAAL + LKKGVTAALNFMAKAVDGLFAGLQKLYKTVMAGIKKFLTMDFKKIFGAILEAAEIAAE + IALAFATGGGSVLIQIVKWLATTLPQLLRTAGSVMNFVNTIKSIKLKDVLKLLSAAGI + AGFLTKGLFGELTGLPKESKDEKDGKEPASGRAEKGLVKVLHALSSVFNVFKGVYNKI + AGGVGKILGIINIAVKPWFATFSAIYAGAVKAMDVVGNPVETLSEGAGKLKEAVGSFF + GNVKGKLQEIAGSIKSKVAILGQPAQLMKLIANKAVDMVLNFIISHPPSALIKAVFKG + IEAIAGKSIVELVRQYIPFADKLFDKIAGSGPVQSLMKPLQGPINNVNGMIDEVTDGA + TGMVNNAEKSATSTLGSGAKLVTAMGIGKAGGSKANSKGDAKGESKGGGPKGGGDFLG + ILLSGIHTKLYAIGLRNIAKLGKNLASKVAGGAKAIIGKMLTPKVKFKLGNENHELWV + EKGKNKNVVMMASTPDLFENKIKEGKVPDNGEIRDKETIVKKNPSEGTVKDLGKAVQK + AKGVSKVAPMTWNEFEAANAGKYDKAEMSKAWEKYKGEYYPNDGKHYLERPYLRQDTI + NGITRGRGANGTFFDANTLLPIEGTPDIGHVYGREFWRERDKAEDKGWTQSQFNDYMN + NSEFYQFEDPKSNRSHQFEDKSK" + gene 1817994..1818365 + /locus_tag="Ccel_1493" + CDS 1817994..1818365 + /locus_tag="Ccel_1493" + /inference="protein motif:PFAM:PF00023" + /note="PFAM: Ankyrin; + KEGG: ankyrin repeat protein, putative" + /codon_start=1 + /transl_table=11 + /product="Ankyrin" + /protein_id="ACL75846.1" + /db_xref="InterPro:IPR001395" + /db_xref="InterPro:IPR002110" + /translation="MQKLDEVGRDAIFYKIIDKEFGEAKQLLESTKNVNFQDENGYSY + LHCAAQVKSIEIATLLINKGAIIDIQDKYGKTPLMVAISDYNGDDKMIKLLLEYGANK + EMENNYGISAIKVAAMKGIDL" + gene 1818651..1819541 + /locus_tag="Ccel_1494" + CDS 1818651..1819541 + /locus_tag="Ccel_1494" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ypp:YPDSF_0215 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75847.1" + /translation="MRRSQPHPLWAAERKLVTAMGIGKAGGSKVNSKGDAKGERKGGG + PKGGGDFLGILLSGIHTKLYAIGLRNIVKLGKNLASKVAGGAKAIIGKMLTPKVKFKL + GNESHELRVEKGKNKNVVMMASTPDLFENKIKEGKVPDNGEIRDKETIVKKNPNEGTV + KDLGKAVQKAKGKTPAERAEKKGYKGIGTTKNGGPDFASTEYLYPVKEGQRNIVTIKM + TGDRGRDFTQAFDEAKIPSRERKSIKENYTWHHADDFDPKSGTCSMQLVQKEAHEATY + THKGSCAQYDEYHNEKIYNK" + gene 1819564..1820028 + /locus_tag="Ccel_1495" + CDS 1819564..1820028 + /locus_tag="Ccel_1495" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bfs:BF1743 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75848.1" + /translation="MDSIYNNEFINTKEKLSEWDLQEIEKKFSFKIPSDIYKHYLLYN + GGYPEKCIFVDADGRRYEVEHFIPIKNSNNKRSLDKVLSLHYDDKLLPSWLIPLADEA + GGDLYCYSLRENEIGAIYYWSHEFEYGENPEEHIKYLASNIKQFINTMIEDE" + gene 1820063..1820176 + /locus_tag="Ccel_1496" + /pseudo + gene 1820182..1820616 + /locus_tag="Ccel_1497" + CDS 1820182..1820616 + /locus_tag="Ccel_1497" + /inference="similar to AA sequence:KEGG:BSU39290" + /note="KEGG: bsu:BSU39290 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75849.1" + /translation="MSKFDLSRVNGNFFKLSEDDIINAERKMGLELPRELKEFFKEVG + YGFIKGSDSTAINRMIDPGTIADIRLRKGFYESDPDLDGVYDEESMLIFFEVNEGVYL + ALDLNNNDKSPVHYFDFKIADSLTDFLINMVKDTEYYLDLID" + gene 1821094..1821315 + /locus_tag="Ccel_1498" + CDS 1821094..1821315 + /locus_tag="Ccel_1498" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75850.1" + /translation="MEELKIIIELLKKIRAKNNVVFNSCQDEKLMQDIEYGNLYQEYW + TSDFRLKNVIGLLEAVEKELIDDKRVHKK" + gene 1821417..1823651 + /locus_tag="Ccel_1499" + CDS 1821417..1823651 + /locus_tag="Ccel_1499" + /inference="protein motif:PFAM:PF00004" + /note="PFAM: AAA ATPase central domain protein; + SMART: AAA ATPase; + KEGG: gsu:GSU0972 AAA family ATPase" + /codon_start=1 + /transl_table=11 + /product="AAA ATPase central domain protein" + /protein_id="ACL75851.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /translation="MISSENNATDIPENQGNMDSNQKPIEYASSREYLLDELSRLDLV + LRRFIRDDKEEGCTTLYAGVVLSKEEIYDLLDDKNTFAQETSIEERLSELDEQIAKRL + EASKACRRHISLPYLSRLLGLSLFEQRCLIACMAPEIDPKYEKVYGYFENDTSIKNPS + INLMMNIFLSTEDERIEARKLFSLQAPLVRLLLESRNDLSDNCIPLISRHLKLDDWVV + NYLLDINILDSRLIHVAEMIQTGQRQNISANTENVRILRFIDYYRNGRTKRNQILYFY + GPEGAGKKEYVLSVCEYLGLPLIVTDLEKILSNDLPFDEILKLLGRQIKISGGILCLE + NFQLLVSDERSQQIRINRILQMLHEFSETTFILGRTQWHLTNTDSRFAFIAVEYPYPS + ATERRKHWQELSKKYQLDEKLNLNNFSEVFRFTPGQIENVLKLGENYSVWNGYSDGRI + EVNDLTNACYTQSNKKLGELAKRIEALYTMEMLVLPEDQMLQMKEICRQVKYRSIVYE + KWGFEKRLALGKGLNILFSGPPGSGKTMAAEVIANEIGLEIYKIDVSRVVSKYIGETE + KNLGEIFHEAETSNVILFFDEADALFGKRSEVKDSHDRYANVEIGYLLQRMEEYKGIV + ILATNLNQNIDEAFLRRLHFNIAFPFPDKEQRKLIWLSIFPSGAPVEDNLDYDFLAEK + FVMAGGNIKNIALNAAFYAAHAGCPIGIKQIMQAAKREYKKMGKTFLKSDFDPYYQLI + EVVK" + gene 1823652..1824260 + /locus_tag="Ccel_1500" + CDS 1823652..1824260 + /locus_tag="Ccel_1500" + /inference="similar to AA sequence:KEGG:amb1882" + /note="KEGG: mag:amb1882 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75852.1" + /translation="MAVETRTVIRDVSASLKALIKANVPELNDDSYITFGSPSDVDSA + TMTLSLCLYYLTESHSMRNSERERIPGTNQLFDPPSYLDLYYLMTPYAKDRDTELLIL + GKLFQLFHEHAVLSGDDLKGNLAVCGNEHIRISYNNLSLQDIKQLWEVFPGKPAKLSL + SYLVSAVRMPAEKIITFPLITEDPTLKYYDLKTHTNLSQKNT" + gene 1824380..1825924 + /locus_tag="Ccel_1501" + CDS 1824380..1825924 + /locus_tag="Ccel_1501" + /inference="protein motif:PFAM:PF04984" + /note="PFAM: tail sheath protein; + KEGG: sgr:SGR_2066 putative phage tail sheath protein" + /codon_start=1 + /transl_table=11 + /product="tail sheath protein" + /protein_id="ACL75853.1" + /db_xref="InterPro:IPR007067" + /translation="MPNYLSPGVYVEEVSSGVKPIEGVGTAVGAFIGIAEKGVIGKAV + LVTNWSQYVSEFGGFIPNAYLAYAVYNFFAEGGTSCYVVRAASEDAKKSLYIVKDSQG + ENLFEISARSEGNWGNRISFQISSSTNGQMNGFKLNIKYTEKSSFSDEYVGEDVEGEL + VETFDNLLIVNFEEKINDLSSFISVRPLVDLKKVDNMDKVPMFTEEDEFIELANGVDG + ISYVEYIDSEEKKLGINAFTPIDEINIIAAPDVSNMVSNRNIILEILNYCKTRKDCFY + VIDPPHGLTPQQVKDFKEGAGEFTGNSFNSSYGALYYPWVFINDPLTGKKKLIPPSGS + VVGTYAYVDSARGVHKAPAGTTDGYLDTVVGVEKIVTKGEQELLNPIGVNVIRSLPEG + ICIWGARTLSSDSEWRYINIRRLMMYIEESVDKASQWVVFEPNEPTLWGKVKRNISAF + LTRVWRDGALYGSTQEEAFFVKVDEENNPPASRDAGQLVIEVGVAPVKPAEFVIIKVS + QKTLSK" + gene 1825948..1826391 + /locus_tag="Ccel_1502" + CDS 1825948..1826391 + /locus_tag="Ccel_1502" + /inference="protein motif:TFAM:TIGR02241" + /note="TIGRFAM: conserved hypothetical protein; + KEGG: gsu:GSU0976 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75854.1" + /db_xref="InterPro:IPR011747" + /translation="MATGKRNDPYRNFRFRVVIDGIQIAAFSDATIPDITTEAVEYRE + GTDAPHSRKLSGLTKFGNVTLKRGLTDSMDLYNWRKAVVQKGALNNRRSLSIILVDEE + GNDKAQWDIIEAWPIKYDVSALSAKGNEVSIENTEFAHEGVSRVR" + gene 1826502..1826957 + /locus_tag="Ccel_1503" + CDS 1826502..1826957 + /locus_tag="Ccel_1503" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: gsu:GSU0977 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75855.1" + /translation="MRVKDASTLFLRVEAVPLHQTMQKREECRMDILQTEFNFTLPKG + YVDDTGTVHKQGTMRLATAADEIMPLRDARVQQNPAYLSVILLSRVVINLGTLKMITP + RVIEELYTSDFSYLQELYNRINQNGSNIIRTKCPKCDHPFEVEAEILGE" + gene 1826999..1827139 + /locus_tag="Ccel_1504" + CDS 1826999..1827139 + /locus_tag="Ccel_1504" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mlo:msr6553 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75856.1" + /translation="MSYYLHWDYKTVLGLEHFERERWCREVSEINKKLNGDEGKKDFF + EV" + gene 1827149..1827622 + /locus_tag="Ccel_1505" + CDS 1827149..1827622 + /locus_tag="Ccel_1505" + /inference="protein motif:TFAM:TIGR02241" + /note="TIGRFAM: conserved hypothetical protein; + KEGG: gsu:GSU0979 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75857.1" + /db_xref="InterPro:IPR011747" + /translation="MANIVNLVERRNWVPGYRKDPYLTFNFIVEIDGIAVAGFTDVSG + LSIETQVERKTFGGENHKEYTFLTQTKYSDITLKHGITNDDYLWNWYRRVINGRITRK + NGSICLLDHSGNPKLWWDFLGACPIKWEGPAFSATSSSVAAETLVLTHNGINMHK" + gene 1827646..1828956 + /locus_tag="Ccel_1506" + CDS 1827646..1828956 + /locus_tag="Ccel_1506" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75858.1" + /translation="MYMIKINKFNKFNTSFAQNILSKYGIGRWKGQFTRLIFRNSSDM + VLESREGKESFNYTKIKKYNTLLKVYKYINNTSSKSELPGKILTVNLDPTFKKHEKII + NVTTPTEIKLYSKTEPAKFIQKVTLNTNKQEQKYFFHRPTEKTVLDSSDGITEVRNDT + ANYNKYVYQNINTQNKETVIYNKTTDTKVFETERVIKEPREHTYQNILEKEITYKKDY + EKQTVVREVAQKPVVSANKYVWQNRLNTLFYNIFPLTQSKADRLHGTFEKSIKNQTAI + INKLIPSEKSHQPETGELNSEKFNVKNGIPTRNIIHSTQKQQINRNILHEYEIKETNL + EEYEEFEKFVHFSPQKNDKITDLVFYRPMLKEKEKKEQGIKDILPMDIMHAEKNVYAK + ATSPSKPDKKLQTIGNEEVKMLADKVFQILEKRLTIQKDRRGLR" + gene 1828956..1829570 + /locus_tag="Ccel_1507" + CDS 1828956..1829570 + /locus_tag="Ccel_1507" + /inference="similar to AA sequence:KEGG:amb1890" + /note="KEGG: mag:amb1890 LysM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="LysM domain-containing protein" + /protein_id="ACL75859.1" + /translation="MAEKAQIIPLDLPGAEPISVMFNPNEYTVSFEGKYTGEDDKKQF + QIAETPEFKISLFYDTYEKRRDVRRETMKITNLLNPKVAGKKTKKPPSCLFVWGGYSY + RGVISKIEQKYTMFLENGTPVRSLLDITLISDKPQKKVELDRGKEACRKLWIVKSGDR + LDIIANEALKDPLKWRTIAAANGIINPLGFPSKNDFGRTLVIPD" + gene 1829581..1830627 + /locus_tag="Ccel_1508" + CDS 1829581..1830627 + /locus_tag="Ccel_1508" + /inference="similar to AA sequence:KEGG:amb1891" + /note="KEGG: mag:amb1891 phage protein D" + /codon_start=1 + /transl_table=11 + /product="phage protein D" + /protein_id="ACL75860.1" + /translation="MGTTNVANYKIKLNGSDFSADLFNAIETLTVEDEINLPSMFRIQ + MNMVDSGNGKWRGIDLKTFKPGDKLSISMGLDKPELMLSGEITSLELLVAEHSLVEIR + GYDLLHRLRMGTRNKVFTKKKDSDIASEIAREHGLTPQVDDTKTIYPYVFQNNISNYD + FLLKRAAYLDYELYAQDKKLYFVKSRAPKAPELPEFNYKRDYEELNLELRALTKGSEV + TVRGWNVKEKKEIEALAKKGDESTKMGGKESGYDITVKSIEKAPVSFWVENLIDVSEG + KAAAAAAYNSLLREFITGEGKCYGNPLVRAGKSVKLLGIDERFTGVYYIISTIHNIDK + QGYMTKFKVKRTGI" + gene 1830624..1831343 + /locus_tag="Ccel_1509" + CDS 1830624..1831343 + /locus_tag="Ccel_1509" + /inference="protein motif:PFAM:PF04524" + /note="PFAM: Rhs element Vgr protein; + KEGG: gsu:GSU0983 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Rhs element Vgr protein" + /protein_id="ACL75861.1" + /db_xref="InterPro:IPR006533" + /translation="MSEGINISNFTEYIQRDEKVLGVMIGVVIKNDSANDSQKPGLGL + VKLQIPLLGMKESNWARIASFMAGKERGAFFLPEVGDEVLVAFENGDVNKPFIIGALW + NGKDTPPEKNSDGKNNIRVIKSRSGHIFEFSDKSGEERILLKSSKGHIVQIDDKSGAE + SIQIIDKSGSNKLTISTKDNKITINSGNIEFSAPNGKLSINAKDIEIKSSAATKIEAS + AGIDIKASSNMTIKGATVNIN" + gene 1831389..1831784 + /locus_tag="Ccel_1510" + CDS 1831389..1831784 + /locus_tag="Ccel_1510" + /inference="protein motif:PFAM:PF05488" + /note="PFAM: PAAR repeat-containing protein; + KEGG: scl:sce8200 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="PAAR repeat-containing protein" + /protein_id="ACL75862.1" + /db_xref="InterPro:IPR008727" + /translation="MGQPAAKQGDRIVATDTHIELVPVGSSTVPTPIPNPFTGIIDGS + LSSNVNIMGKPAATVDSTATNTPSHSPKSGPFQKAPKNKGKISVGSTTVKINGKLAAR + NGDAAITCNDPADIPVGKVVAAGTVIIGG" + gene 1831850..1832245 + /locus_tag="Ccel_1511" + CDS 1831850..1832245 + /locus_tag="Ccel_1511" + /inference="protein motif:PFAM:PF04965" + /note="PFAM: GPW/gp25 family protein; + KEGG: gsu:GSU0986 tail lysozyme, putative" + /codon_start=1 + /transl_table=11 + /product="GPW/gp25 family protein" + /protein_id="ACL75863.1" + /db_xref="InterPro:IPR007048" + /translation="MEVIDFLGKGLRYPVSAKKSKLCTSVGEESIKESIMLILGTSRG + ERVMRPDFGCRLNDMLFSSNELGTATLIQTYVEEALLNWEPRIEVESVTATMNQTEPI + IEINVDYIIKSSNSKANLVYPFYLESVGR" + gene 1832245..1835856 + /locus_tag="Ccel_1512" + CDS 1832245..1835856 + /locus_tag="Ccel_1512" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: noc:Noc_1865 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75864.1" + /translation="MTDMIPKIDNRSQQDLVNEIRRLILYYCPEFGSIDDVVADKELD + ALVNIFSNMMGHVNYSLNQALDKNFTAFLNLIGVSPTSPIPSKAPLVFKLKDDWDKDG + FIPTGARISAQPENKNEVVFETQSDLTVIRPGLVRAVSIDPVEDRWSNLDYLLAENNS + NEAEMFRGESPIIHRIYIGHSKLFSIEDAVVNVRLQLNGDSRDKYSLQWYYFDDKGES + QPLKLENGSRQTLLQTGGISFSGIKGIAQKEISGYKKDNSFNCWENHWIYAELKSDLI + DTSLLPDVEDIKISVDTFASGLAPEIAVFNYAPIDLTKDFYPFGERPIFNDTFYFAIK + EAFSKKDADITLCINLSDAKSIPDTKNILLAWEYWNGTKWNEFAKTGISDKSGSSTCI + KEGLIYSDTTYALTKSGNIKFKCPEIQSHSINGEENYWIRIRIIGGNYGEDGRVSYVP + KTVLINNEEITLTEAEYNEPTFIPPSVKELLIDYTYSSPKVFPENVITENNFIMGEKT + EECLAAGKTFKLFSSCTDSEPALYLGFDRDISNLPVSLFFPLTGNQKGKKPVVAWEYT + NGRKWLALSVNDAVRDFTRREIQQLVIPGDIEKTPLFGSEMYWVRARLESANQVDGGY + IVYPRLNAIYSNAVWAYNSNTIQNEILGSSNGEPNQTFQFTRTPVLNGQVVRVTETLG + QADAIKWEEVQTFSLSEPDSRHYMLDNNSGVITFGDGNNGMIPPAGKENIQCDYKYGG + GSSGNVEADTIKKLWDSYPGIDSATNPVAADGGFDQEEIEETKKRGPHTLKSMDRGIT + CEDVEWLVREAAPQIAIVKCFPTMDQNLDFCPGKATVIVVPDYDAPKPVPSQELLNEI + EKHLAQRIPTVLNNDDSPRLDIIGPDFIRIGIEASVKYTKPESAKIIEGHIIENLREF + LNPLKGGQEKTGWTLGKNLYISEVCSVIKNTPGVDYITDISVKASVQCYTLNIELIKD + RPFRPTISYPSYCAVKSKDNRIIFALAQKLEANKDVRTLLVKGFREGDKIILTCVNCP + PKELIVESVEGDTLQCRTFDGEPLEVDYPVGSDIEAEATPDLTIRSFILNEIKSQSKT + FYIKIAVPEARDVFFLSRNDEYINTTPLKISEVLEGDVFLEEDELVYSGEHFINKKSE + VKFLYLLNRDTNIIHDSVNHAEDCRVGEFLKEDRRYLEKITDAPKGTKCDNCFPNMD" + gene 1835909..1836778 + /locus_tag="Ccel_1513" + CDS 1835909..1836778 + /locus_tag="Ccel_1513" + /inference="similar to AA sequence:KEGG:Npun_F1413" + /note="KEGG: npu:Npun_F1413 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75865.1" + /translation="MSLPIQKLGEITFEDLVREAKSLIPMYAPEWTNHNPSDPGITLV + ELFAWLCEMIIYRIDQVPEKNNLRFLKLLGTQLENREELTSGIRRGVQQLTQCTRAVT + TEDFEFLALKALMEKPGIKETYPDLIARTICLPNRDMENNKTEEAGQFGHISIILIMS + TKNQNDLTKETYDIKQYIKKYLLERKVLTNRVHVVDPDYQEIRINMQVVANDKKMGDM + VRDVIEKYIDPITGGENKNGWPLGRNLYASDLYYIVEGIKGIDHVKHMELDAPLLKPY + QLIRLKELSIEVE" + gene 1836778..1837515 + /locus_tag="Ccel_1514" + CDS 1836778..1837515 + /locus_tag="Ccel_1514" + /inference="protein motif:TFAM:TIGR02242" + /note="TIGRFAM: phage tail protein; + KEGG: npu:Npun_F1414 phage tail protein" + /codon_start=1 + /transl_table=11 + /product="phage tail protein" + /protein_id="ACL75866.1" + /db_xref="InterPro:IPR011748" + /translation="MSNYESSKYTQYLPRIFQTGNNKDGDFLGRLLKSFEQILSGKTE + MQETRGIEEILDDFDMYLDPDQTPPQFLEWLAGWVALDLEDGIEFFGAEDTAGKNANQ + VQILPLPEKRTSVNREMIGAIVQLYKKRGTCDGLLEYLQLYTGEETTISINEFQDTAR + IGESREIGRNTMVGSSSPSFFCVNAMIPAHSKSMLENKVGLIRRVIEDEKPFYTNYRL + NVEIPEMRVGVYSKVGKETLLGGMIDE" + gene 1837565..1840186 + /locus_tag="Ccel_1515" + CDS 1837565..1840186 + /locus_tag="Ccel_1515" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bba:Bd2582 cell wall surface anchor family + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75867.1" + /translation="MGKELKRMRYFDGLFLNAEDYKLDQDYQKRIQQLHNRYLHTWGI + IAGLTVVPSENCSVKVQEGIAINEVVADNGESTSQYIYIYDEHPDSIIDLSQYRANDE + SIYIYVSYDEVEQDKENLEKGKGEAIHIWERGRIWHSTEKPADEKKYIILARVEIGLA + KDSSQDTNLLIINEDGSEDSTQSESKKVISLISYFDDEEEKIPLRRYAGPAGEVLSLQ + KIIFKLNDDVAGMPFIRALEEDKKKGIGLEVNSTFANFTGSVNIKGDLEVHGSLTNMG + AVENELEVSNTFVQVNSKSDDGLWKLQDGGLEVYRDYAGDKSLDARIVWSEMDKCWKM + GYEGQLWEIAYGPVWEKLIKNDIVDELHRHSKISFEGGVALESDDKGNLSAYGNLNMN + DKTIWLRDSGNVNHGLGWYGIGKPFAGLNVDGPVLFGKKGGILGTTDGGQKPVITWNN + LGNVGIGESNPKDDTMQVNGTMRILSNSNPLRFTSSWSGFPDSISNGAEICNDTVYHK + ALMIVGNRSAGQGRKVAVWDRLEVNGFLYVNGNMQLNQALTPSAGKEKNNGIVFPSDP + GGGAGDSAWIRYYPRSGEACTLEIGTSNDADDSISLMASGNVGIGTVNPNDKLDVSGY + TRLLSGSNPIRFTSSWSGFPDFAENQAEICNDTTNFKSLMIVGNKSGKQGRKVSIWDR + LEVNGTLNVSGDVQTQCAIIPSIGYSESNGIMFPKDYYGGTGDSAWIRYYSDQSRGGG + ENMTLEIGIANDVGTGGYYGGGDRIKLTASGGVYVDGYFYYSSSKDLKENITTLTTKK + AKQILDGMNPVTFNFKGDNEKTTLGFIAEEMPGSVAANDQKAISPMEIIAVLTSVVKE + QREAITQLQQQITTLAD" + gene 1840212..1840388 + /locus_tag="Ccel_1516" + CDS 1840212..1840388 + /locus_tag="Ccel_1516" + /inference="similar to AA sequence:KEGG:Npun_F1417" + /note="KEGG: npu:Npun_F1417 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75868.1" + /translation="MSEQIDARIKELKAELESGQKAIENLEVQRTNIMYTLLRINGAI + QVLEELVQEDSSDS" + gene 1840450..1843137 + /locus_tag="Ccel_1517" + CDS 1840450..1843137 + /locus_tag="Ccel_1517" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: sfu:Sfum_1625 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75869.1" + /translation="MGKELKRMKYFDGLFLKAEDYKQDKEYLRRIQGFHNRYLHTWGI + VCGLEVKPVIDSSMEVVVTEGVALDLINNGTYGSGIEESTSRQIIIYEGHPDNPLDLS + DYPAEENIYIFVSYCEVEADRDNDKGQGQEIHLWERGKIIHTNKKPENCKENIILARI + VPKRIEKKIKNSDGSIGTYYEVVVDSTCIFEDDSDGTPLRVYAGPYAKVLNLKQFIFK + LGEDLEKMPYISSIPQEDKITVKQLDINSKYVKFNGNVDVVNDLSFEGKLIHKKDGVV + MDEFLTEESFLQVNSKNDDCPELWELRDGGIEVFRGGPEVAPDARIVWSEGDRLWKAG + LGNDLYPIAYGTEWERLSNKDMKYFVDDKHGHSKLFSQSKGTMLSVNAAGDMSATANL + VLPQKDISFLSSVLSWYGNGKPFTNIDVDGPVLTGKTGGFLGTSEDGQKSVLSWKNNG + NVGIGTIYPSDTLEVCGSTRVLGGLNPIRFTSQWTAFPDITTNQAEICNDTTKYKALM + IVGNQSAGQGRKVSIWDRLDVNGILSINGNMQISKGLTLSSGAGNNGVIFPSNPGGGS + QDSAWIKYYPKYGEACTLEIGTSNDSNDNICILTPSNVGVGTYTPMDKLDVVGTTRFL + SGLNPIRFTAKWSGFPDTGSRNAEICNDTYDYKTLMIVGNRSSGQGRKVSIWDRLDVN + GPLKATGNIQARGAIIPGVGNCSIKGIMFERPKNTDDAAWIRYYSDTLRGGGENMTLE + IGISNDSNIETYSQTYFVSTCPWNVTNGCGYWKTVTNTIIGNKGDRIRLRASGGTYVE + GNFYYTSTKEVKENIKKLSKGKVKSTIEQLDPVEFNFKGDRKRRTIGFIAEDVPDILA + SSDKKAISPMEILTVLVGEVKEQENLIKNLKKKVAALQE" + gene 1843202..1843381 + /locus_tag="Ccel_1518" + CDS 1843202..1843381 + /locus_tag="Ccel_1518" + /inference="similar to AA sequence:KEGG:Npun_F1417" + /note="KEGG: npu:Npun_F1417 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75870.1" + /translation="MKEKIEERIKELKGEFENGQKMLEELDAKRAGLNQTLLRISGAI + QALEELMPEENVPEQ" + gene 1843464..1849196 + /locus_tag="Ccel_1519" + CDS 1843464..1849196 + /locus_tag="Ccel_1519" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: predicted protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75871.1" + /translation="MSNEIKRMKYFNGLLLKADDLELDQDYHKNLHRMHNRFFHNWGI + VDGLKVEAVGNYPQVKVSKGFALNSTLDEKTNEKISQEIWISDNHPDNPLNLSEYDVN + EDIYITVSYSEIPSDVDIKKGGDKNIHVWERSKIKHSRIKPDPKTKDEITDIIVARVR + LKDAGSGQKSVEGIYDTAEDGVVYAVTQGTAQEFEKISIGAEKKTNLPYINGLSDQTL + GQSDGLEVHSPYTKFSGSVIAGDFKTNGNTDLNGTLSVNINNTPVLKVDSKGSVAISK + TAAVTGVLSAAGGLNVSGDNTTLDTTHVVMTGNMLTVNKYTPKENETEPRKQSSGVEV + YRSGYLPYAKLIWDENEKVWKAGTDKKDDIPGSGIYQLAYGADWDAMHNGSNVDTLHK + HSHINDANGNISLAADEDGNVNITNDIIVAGTIVTQNGIEVPGKDLNAKLVWNKNDRR + WQIGVENDMYNIPYGRAWEDLTTGTNADLLHTHSEIYNSDGQLAMNVGPTGDVKINSN + LTVGENLTVQGTLTVLNPATEYKQINQVITESTVIVNKPDNGQAPVKEGGLEVYRGDG + YENARVIWDEGSCTWKMGTGSNLSEIPSGIEWEYLTHGQVVDNMHSHRNLSMEDGTAV + VSIDKNGNLDVEKNINVSGNLIVDKDEYIQGDVDIRGSVTIEGDLTVTGTPTIIKQNI + LEIDNNTIVANKYTGTAQPINNEGGLEVYRGSYAKKARLVWNEKEGKWKVGTENSMKD + LAYGDDWETLTKKKTADELHSHLSIRDTKGNVAISAESDNRIMINRATKVEGALEVAG + GVSVLGNLDVAGTLTSVNKVDLKVEDNVILLNNFEGNEPPLNESGMEIFRGKSQQNAR + LIWDEKETIWKIGVGNNLSEIAYGPSWQKLSKKGNADALHNHGQLYNIKGNILSLSTT + AAGNIDIKHDLTVSQDLTVSGNLNVKGDVTTIRSANIELEGNKLTMNKGESGEIKKGT + STLSVYRGIDEKSAILRWDEQAGVWKIGMSDWTWAQENSNYKMVPSENSTCLVINNDG + SIQTPIAKIEKEVSAGSALIGDILSLQKDGIQINRLNETAAYLKFDSNLWKLGFGDVN + CISATSSGKVGIGKLNPAEMLDVMGNAIINGSMDIMGNSEVKGYLTAGSTDIKGRLKV + DGSIIMNGGIEVERQVASDGTPQPNAKIVWNEQKCAWTFGFGDKLFELNLNNTFLPSK + LYTSNGGAVALVTDNDSNVGIGVKIPRAKLEVNGDTLISGKITLTNSLGTTLKIAADG + SLELSRNAEKPAKLYWNEKNKIWQAGIDGSMQDICVGNHTHNNVCTSTGTEVVYVDNS + GNVGIGKSIPEAKLDVVGNLRVTAIDISGSLTAVGNVKCDNADITRTIKAGSASITND + LTVGGNLVVNGDTVTINTRTLEVEDNIITLNKYTPQNQPVATKAGIEVFRGGTANSAQ + VIWDELGGVWQAGTTDKMKTICFTDHTHPEYNNGSISDLTAALKVSNGNIGIGTTTPT + DKLSVSGNVGVTGTMTAANVVVNTKLTTPALDVNGTVTSTNQTIKMRLTTTYADVSTK + LTSKDAEFTGALTVGTLTAGDTTINGTVTSTNQTIKMRLTTTYADVSTKLTSKDAEFT + GALTVGTLTAGDTTINGTVTSTNETVKMRLTTTYADVSTKLTSKDAEVTGALTAATLT + AGNTIVNGTMTTDYANVKTKLTSNDTEITGNLTSNNVKVNGALNVSKGIETTRTDSTK + ACIVWNETASAWEAGIGTNTKKISLGDHTHNTLYAKTNPIVNVSDDGYVGIGKTSETG + IRLSVDGDIKAKTITGDIVATTLTQTSSREFKENISALPLKTALDLLKKLNPVTFDYK + NDSLKKHNIGFIAEEVPEIFTSEDCKSIAVMDIVAVLTSVVKKQQTETKAIKKQLAAL + QKQVAQLLGA" + gene 1849328..1850083 + /locus_tag="Ccel_1520" + CDS 1849328..1850083 + /locus_tag="Ccel_1520" + /inference="protein motif:PFAM:PF06738" + /note="PFAM: protein of unknown function DUF1212; + KEGG: cbl:CLK_3663 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1212" + /protein_id="ACL75872.1" + /db_xref="InterPro:IPR010619" + /translation="METRKVAEIAISAGEILLSNGAEAYRVEETIAKVCNSYGLTGEC + ISNLTGIFISITGPEGELVTSIKRIRQRRVDLYRVELVNSFSRKLMENPVSYEEAIRI + LKDINNAPSFSLGIRLMAASMTSFIYTLFFKGTVPDAIVALMISLGIYFILQKIDEVG + FFQFLQFFLSGFLIGALSITVQYILPFIHKDNVITGAIIVLLPGVSLTNAIKDILYGD + YVSGLAQFGETVLIIIAMSAGIVTALSLFMKWM" + gene 1850089..1850541 + /locus_tag="Ccel_1521" + CDS 1850089..1850541 + /locus_tag="Ccel_1521" + /inference="similar to AA sequence:KEGG:CLD_0282" + /note="KEGG: cbb:CLD_0282 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75873.1" + /translation="MFQQTALAFFGSLFPVILFNIDRRKILWAGLCGAIGWVIYSLMY + TNTYSPIFSSFFGALGIGIYSESMARILKTPTFEFLIPGIFPLVPGMKAYKTLQFIVE + NNMAGAFSSGTQTLAVGGAIGFGIMLSTTIFKFISRLIKNRNKKRSRI" + gene 1851052..1852690 + /locus_tag="Ccel_R0036" + rRNA 1851052..1852690 + /locus_tag="Ccel_R0036" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 1852868..1852943 + /locus_tag="Ccel_R0037" + /note="tRNA-Ala3" + tRNA 1852868..1852943 + /locus_tag="Ccel_R0037" + /product="tRNA-Ala" + gene 1853464..1856376 + /locus_tag="Ccel_R0038" + rRNA 1853464..1856376 + /locus_tag="Ccel_R0038" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 1856628..1856743 + /locus_tag="Ccel_R0039" + rRNA 1856628..1856743 + /locus_tag="Ccel_R0039" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene 1857205..1857885 + /locus_tag="Ccel_1522" + CDS 1857205..1857885 + /locus_tag="Ccel_1522" + /inference="protein motif:PFAM:PF00436" + /note="PFAM: single-strand binding protein/Primosomal + replication protein n; + KEGG: cth:Cthe_0559 single-strand DNA-binding protein" + /codon_start=1 + /transl_table=11 + /product="single-strand binding protein/Primosomal + replication protein n" + /protein_id="ACL75874.1" + /db_xref="InterPro:IPR000424" + /translation="MVGNVIENNVVTISGRVVSEVEYSHEVYGEGFYSFHLDVPRLSE + SSDKISVTFSERLIPKEKLVIGSLLEIEGQFRSYNSYKSESNKLVLTVFAREIVYIDE + DKRIKNPNQIYLNGYICKAPIYRMTPFGREITDILVAVNRPYNKSDYIPCIAWGRNAR + YSQNLSIGDNIKIWGRIQSREYQKKLESGETITKTAYEVSVSKMEISEPSAKEDDEDM + EIESSTEE" + gene 1858305..1859357 + /locus_tag="Ccel_1523" + CDS 1858305..1859357 + /locus_tag="Ccel_1523" + /inference="protein motif:PFAM:PF02424" + /note="PFAM: ApbE family lipoprotein; + KEGG: cth:Cthe_0561 ApbE-like lipoprotein" + /codon_start=1 + /transl_table=11 + /product="ApbE family lipoprotein" + /protein_id="ACL75875.1" + /db_xref="InterPro:IPR003374" + /translation="MKIKQFLILTIVISFSYNLCGCSKSNTGNHYVEKESYQMGTIIS + QKIYGTNAEITADKITQRLKSIEENMSVNIETSTINQINSHSGQAEVFRINSDIYNIL + IMAEKFSSLSDGAFDITVGPLVKEWGVFTNHPHIPSQKRIKELLKLVSYKSININREK + MTFRLPVKGQMVDFGAIAKGYAADEAVKICSSNGVKSAYINLGGNVYVVGHKPDKTTW + RIGIQNPRAADGKYIGILSVSDKTVVTSGDYERFFMKNGIRYHHILDPRTGYPSNSDL + MSSTIVTNSSICADALSTATFVMGLKKSRELLKKLDGIDAVFITKDKKVYVSEKLKRY + FTFYDESGEFTYVEKG" + gene 1859341..1859748 + /locus_tag="Ccel_1524" + CDS 1859341..1859748 + /locus_tag="Ccel_1524" + /inference="protein motif:PFAM:PF07009" + /note="PFAM: protein of unknown function DUF1312; + KEGG: cth:Cthe_0562 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1312" + /protein_id="ACL75876.1" + /db_xref="InterPro:IPR010739" + /translation="MLKKGDIILLLLIVIGILSVLFFGREDAVSFSSRDGSQIDRGAI + TAVIKKDNKVIRKINLSKLDKSEVINVSGLYKATILAEKNRICFVESDCPDKICVKNG + WLNNPGEMSVCLPNKIIIKLEKNRNQNVDGVVK" + gene 1859751..1860281 + /locus_tag="Ccel_1525" + CDS 1859751..1860281 + /locus_tag="Ccel_1525" + /inference="protein motif:PFAM:PF07456" + /note="PFAM: Heptaprenyl diphosphate synthase component I; + KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase + component I" + /codon_start=1 + /transl_table=11 + /product="Heptaprenyl diphosphate synthase component I" + /protein_id="ACL75877.1" + /db_xref="InterPro:IPR010898" + /translation="MYVKNSVDIKKMVLLAVLTSQALVLSVIESWFPFSVGIPGIKLG + LSNIIIIVALIFFSLSNTLAIVLVKCVLSSLFMGGPIIFTFSICGGILSTLIMCIMLK + YMEKWFSLIGISIAGSIAHNTGQIMIACFIMNDLSVIGYLPVLLLAGIIMGTFVGICS + TYFVKGLKKLNIISNL" + gene 1860291..1861247 + /locus_tag="Ccel_1526" + CDS 1860291..1861247 + /locus_tag="Ccel_1526" + /inference="protein motif:PFAM:PF00348" + /note="PFAM: Polyprenyl synthetase; + KEGG: cth:Cthe_0564 trans-hexaprenyltranstransferase" + /codon_start=1 + /transl_table=11 + /product="Polyprenyl synthetase" + /protein_id="ACL75878.1" + /db_xref="InterPro:IPR000092" + /db_xref="InterPro:IPR000235" + /translation="MFFDNQRLNGDIEKVEENLRNSVTSKNKLLVKAIADTVGAGGKR + LRPAMVIVSSYFGKIRQENLIQLASAIELLHTATLIHDDVLDNSPYRRNNETVYKKYG + TDMAIYCGDFLYTKALLMLADIVPANKLTIAARAVKTICEGEVDQYRDKYVMNLSVPS + YLKRISRKTAVLFSASCALGALCAKCNPRITNSLSKLGFYYGVMFQLIDDFRDYKSGD + SEWGKPVYNDLSKGILTLPAIYACRDSKEIHKRVQNYWNKKVNTNEELNSIISLICSS + GGMEYTENYIKRYRQKALREIDKLPQSEARDILGDLINKLHI" + gene 1861293..1863749 + /locus_tag="Ccel_1527" + CDS 1861293..1863749 + /locus_tag="Ccel_1527" + /inference="protein motif:TFAM:TIGR00595" + /note="KEGG: cth:Cthe_0566 replication restart DNA + helicase PriA; + TIGRFAM: primosomal protein N'; + PFAM: helicase domain protein; type III restriction + protein res subunit; DEAD/DEAH box helicase domain + protein; + SMART: DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="primosomal protein N'" + /protein_id="ACL75879.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR005259" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MKVTTVSVVLSNTTRAFDKKYTYSVPEKLSEQVFRGCRVLVPFG + NGELIKEGFVMETNPLVFEEKPITYKEIKEILEPYPLLTNDSIQLLDWMKRRYICTYF + DIIKCMLPPGISVKTVKNIRIDTLNQKEFKKTGLNKVLSILTYCGGECEYGELRSLCN + IKGFKAAIDELCQSGTVILEESYEQKVNAKTVKAVSLARPASEIVEELENNRIKRIQH + VKVLEILLENEIVSVSDIQRFAGVTASVLNTLSKHGYISYKSLEIKRNPLKDKQYAKT + EPLPPTEDQANTLMFLKKQLDSRTFQETLLHGITGSGKTEVYLQLISHCFELGKKAIL + LVPEISLTPQMVERFVSRFGNRVAVIHSKLSLGERFDQWKLIRDGKVDVVVGARSAVF + APVENLGLIVIDEEHESSYKSESLPRYNAKEVAQKRCEINDCLLVYGSATPSIETYYN + TETGKIQLLEMKNRPKTAILPKVELVDMRLELENGNKTPFSSRLVEELQKNRENNQQS + ILFLNRRGFSTFVICRDCGYTMKCPDCSIALTYHSKTKRLICHYCGFTVQNPSTCPSC + KSENIRYFGIGTQKIEEEVSKLITEASVIRMDMDTVGYKNAHEEILNRFKNENINIMV + GTQMIAKGHDFPNVTLVGVLAADGMLNTGDYRASERTFQLLTQVSGRAGRGDIGGRVI + IQTYNTDEYSIIAACNHDFCRFYRQEIMIRKRLDYPPFTNIAVITFTGIRDRGVFEAS + KSIKPLLSKVCPKDTLILGPSRSPIPKIASKYRWRLVIKEKDVELLIDRLTETADKFW + RNNKDKDVSMSIDINPYNML" + gene 1863781..1864260 + /locus_tag="Ccel_1528" + CDS 1863781..1864260 + /locus_tag="Ccel_1528" + /inference="protein motif:TFAM:TIGR00079" + /note="TIGRFAM: peptide deformylase; + PFAM: formylmethionine deformylase; + KEGG: cth:Cthe_0567 peptide deformylase" + /codon_start=1 + /transl_table=11 + /product="peptide deformylase" + /protein_id="ACL75880.1" + /db_xref="InterPro:IPR000181" + /translation="MAYRQIRKDGDEVLRKISRPVDSIDKKILALLEDMADTMYRADG + VGLAAPQIGILKRIVVIDVGDGLYEMINPIILEQSGEQDGMEGCLSIPGVLGKVKRPM + KVTLRYTDRNGESITIEAKEFFARAICHELDHLDGILYKDKAHKMYTEKELEEMQKD" + gene 1864301..1865239 + /locus_tag="Ccel_1529" + CDS 1864301..1865239 + /locus_tag="Ccel_1529" + /inference="protein motif:TFAM:TIGR00460" + /note="TIGRFAM: methionyl-tRNA formyltransferase; + PFAM: formyl transferase domain protein; + KEGG: cth:Cthe_0568 methionyl-tRNA formyltransferase" + /codon_start=1 + /transl_table=11 + /product="methionyl-tRNA formyltransferase" + /protein_id="ACL75881.1" + /db_xref="InterPro:IPR001555" + /db_xref="InterPro:IPR002376" + /db_xref="InterPro:IPR005793" + /db_xref="InterPro:IPR005794" + /translation="MKIIFMGTPEFAVPSLEMLINEGYNVIAVVTQPDKPKGRGKKLA + APPVKEFALEHGIKVLQPAKIKTPEFVEQIRELGPDLLITAAYGKIISKDMLDVPPLG + CINVHGSLLPAYRGAAPIHWSIINGEKVTGITTMFTDVGLDTGDMLLKRELEISSDMT + AGELHDEMAILGAEVLKDTLIHLKNGTLVRSPQDDALSSYAPIITKEVGLIDWNKTVQ + QVHNLVRGTNPWPGAFTFINESKMRVWKTCIVDFGNSQEHCPGEIVSVDDKGILVKCC + DGYIMIKELQFDSSKRMKVRDYIRGNKIDTGEKLGK" + gene 1865229..1865984 + /locus_tag="Ccel_1530" + CDS 1865229..1865984 + /locus_tag="Ccel_1530" + /inference="protein motif:PFAM:PF01976" + /note="PFAM: protein of unknown function DUF116; + KEGG: cth:Cthe_0569 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF116" + /protein_id="ACL75882.1" + /db_xref="InterPro:IPR002829" + /translation="MENNEKAFLRILIIILISFVALLVLFGAAYVNASLNVYSAILIV + LIISVGFCIGALAVMSAAIFRTFKTKKASGLTLALTKLGLRVLMPVAVLFTKSNSKEK + KSIRYFYIELNNIVVESNNKKYNPNEIMILVPHCLQNSLCGLKVTSNPELCRQCGRCK + IGMLLKYTKEKGIKLFVATGGTVARNIVKKTKPEIIISVACERDLMSGISDIKGIPVI + GIINKQPNGPCVNTDVDVERLIEKIRQITVDAA" + gene 1866015..1866713 + /locus_tag="Ccel_1531" + CDS 1866015..1866713 + /locus_tag="Ccel_1531" + /inference="protein motif:PFAM:PF04298" + /note="PFAM: peptidase membrane zinc metallopeptidase + putative; + KEGG: cth:Cthe_0570 peptidase, membrane zinc + metallopeptidase, putative" + /codon_start=1 + /transl_table=11 + /product="peptidase membrane zinc metallopeptidase + putative" + /protein_id="ACL75883.1" + /db_xref="InterPro:IPR007395" + /translation="MGFFYMDRYYLILVVPALIISMIAQIKVKSTFNKYSKVGNSKHM + TGAEVARYLLQVNGIQDVQVTQVGGQLTDHYDPRKKVLRLSESTYASTSVAAIGVAAH + ETGHAIQHKVKYGPLVLRSTLVPVAGFGSAAGPYIAILGLFLGWPVIINVGLVLFFAA + ILFYLITLPVEFNASKRAISVLGSTGILMREELISAKKVLNAAAMTYVASALVAIASF + LRLLLLANSRRNRD" + gene 1866755..1868104 + /locus_tag="Ccel_1532" + CDS 1866755..1868104 + /locus_tag="Ccel_1532" + /inference="protein motif:TFAM:TIGR00563" + /note="TIGRFAM: sun protein; transcription antitermination + factor NusB; + PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; + KEGG: cth:Cthe_0571 sun protein" + /codon_start=1 + /transl_table=11 + /product="sun protein" + /protein_id="ACL75884.1" + /db_xref="InterPro:IPR001678" + /db_xref="InterPro:IPR004573" + /db_xref="InterPro:IPR006027" + /db_xref="InterPro:IPR011605" + /translation="MAVDLARETALKILYDITENHAYSNISVNRHLENDKLREIDRSF + ATELVYGTVKWLLQIDYVLGKYSSVKLKKLSPWIKNILRLGIYQLLHTDRIPVSAACN + TGVELAKRYGHQASSRFVNAVLRNIAKSKNNIPYPDKSDNVNYLSILYSHPVWMVEKW + IELYGTEFTEELLKSNNQVPDFIIRTNTLKTDRVTLLDMLHKEGISAEPGRYIEEAVI + LKSPSSITNLEVFKNGYFQVQDESSMLAAKILDPKEGETVIDVCSAPGGKATHMAQLM + NNKGTIIARDVYQHKLKLIEQSCCRLGIDIIKTEIHDACCLDETFTGKADRVLIDAPC + SGLGIIRKKPDIKYSRTEKELREITGLQREILKNSSKYLKPGGYLLYSTCTIQQEENL + DIVSDFLEDNPDFRLTGFQELMPPTLDIASSAEGYIQLFPNINQTDGFFISKIKREK" + gene 1868114..1869163 + /locus_tag="Ccel_1533" + CDS 1868114..1869163 + /locus_tag="Ccel_1533" + /inference="protein motif:TFAM:TIGR00048" + /note="TIGRFAM: radical SAM enzyme, Cfr family; + PFAM: Radical SAM domain protein; + KEGG: cth:Cthe_0572 radical SAM protein" + /codon_start=1 + /transl_table=11 + /product="radical SAM enzyme, Cfr family" + /protein_id="ACL75885.1" + /db_xref="InterPro:IPR004383" + /db_xref="InterPro:IPR007197" + /translation="MINLMNMTLEELEQMLSEMGQQKFRAKQIFKWINSGIRSFSDMT + NISKQLRDELEKVSKISRLKIVDRLQSKIDSTVKYLFELEDGNIIESVLMEYKHGFTA + CISSQAGCRMGCKFCASTGAGFSRNLTPGEMLDQVMTMQEDSGNRIGHIVLMGIGEPL + DNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLHSARD + DKRSAMMPVNKTYCIDKLISACKIYTVSTKRRITFEYAMILGENDSEQDARELAGLLK + GMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQL + RKNKIDSTTNLLLNS" + gene 1869190..1869915 + /locus_tag="Ccel_1534" + CDS 1869190..1869915 + /locus_tag="Ccel_1534" + /inference="protein motif:PFAM:PF00481" + /note="PFAM: Protein phosphatase 2C-like; + SMART: protein phosphatase 2C domain protein; + KEGG: cth:Cthe_0573 protein serine/threonine phosphatases" + /codon_start=1 + /transl_table=11 + /product="protein serine/threonine phosphatase" + /protein_id="ACL75886.1" + /db_xref="InterPro:IPR001932" + /db_xref="InterPro:IPR014045" + /translation="MKYGIKTDRGLKRQLNEDNCNVLVGYPGIPVCFVIADGMGGHQC + GDVASKQAVDSVCNHLLKSDWTTEGIPELLKNIIATVNDEIYKFSLLDNSTQGMGTTL + IITILKNRKLYIGHVGDSRVYLIRNNTIKKVTWDHSFIEEMLKNGSITKDEAINHPKK + NLITRAVGYEPDLQVDTYEIDVVENDFILLCTDGLTNMITEDEILDIIINTKDPQDAC + DTLIQNANNKGGEDNVTVIIGKI" + gene 1869929..1871812 + /locus_tag="Ccel_1535" + CDS 1869929..1871812 + /locus_tag="Ccel_1535" + /inference="protein motif:PFAM:PF00069" + /note="PFAM: tyrosine protein kinase; PASTA domain + containing protein; Serine/threonine protein + kinase-related; + SMART: serine/threonine protein kinase; + KEGG: cth:Cthe_0574 serine/threonine protein kinase" + /codon_start=1 + /transl_table=11 + /product="serine/threonine protein kinase with PASTA + sensor(s)" + /protein_id="ACL75887.1" + /db_xref="InterPro:IPR000719" + /db_xref="InterPro:IPR001245" + /db_xref="InterPro:IPR002290" + /db_xref="InterPro:IPR005543" + /db_xref="InterPro:IPR008271" + /db_xref="InterPro:IPR017441" + /db_xref="InterPro:IPR017442" + /translation="MEGQILGNRYLLLEKIGGGGMAVVYKAKCTLLNRFVAVKILRTE + FINDDEFVKRFKIEAQAVASLSHPNVVSIYDVGHQDDIHYIVMEYIDGMTLKDYLNKH + GALNWKHAVEITIQICSAIEHAHKNNIVHRDIKPHNILMTKEGIAKVTDFGIARAVTS + STITMVGSTIGSVHYFSPEQARGGFIDEKSDLYSLGIALYEMVTGKVPFDGDSPVAVA + LKHIQEMPLEPHKLIPSLPYGVNEIIMKAIQKEQNLRYQSATEMLSDLNTVLVQPQGG + FVGNKSVSNQSTIRIRTVNSDDIDSTVRVSTRPSNVNNKKYESEKQKKKNNTTYWLAG + IASVLVIGVLLFITIGLLTKDGSKNEINTMPDYRNKIFEDVKEDLIKRGINYTENWQD + NDSVEKGIIFDQSVEPGTEYRNGNFTNLELTISNGPKTKKVPDITNKDYRAAQSELES + QDIKYRIEEEFSESIKEDYVIRTDPKADEEIAEDAIVTIYVSKGAEVKLIKVPNLVGK + TESVAMQLLKDAKLSLGSVLPAGTTNGIVNKQAPEAYSEVAPGEAITIWLTPQEQQAP + SSPSQSDSSDTKPNGNSGGDNTKGGNNKGNTNTPGDQETSGTQQPDNGSGDGDNKTNT + EGK" + gene 1871826..1872743 + /locus_tag="Ccel_1536" + CDS 1871826..1872743 + /locus_tag="Ccel_1536" + /inference="protein motif:TFAM:TIGR00157" + /note="TIGRFAM: ribosome small subunit-dependent GTPase A; + PFAM: GTPase EngC; + KEGG: cth:Cthe_0575 ribosome small subunit-dependent + GTPase A" + /codon_start=1 + /transl_table=11 + /product="ribosome small subunit-dependent GTPase A" + /protein_id="ACL75888.1" + /db_xref="InterPro:IPR004881" + /db_xref="InterPro:IPR010914" + /translation="MQLGIILKGIGGFYYVKQEKTEDIFECKPRGVFRKNSVTPLPGD + RVGFSIIDGDKKLGNIDEILPRSSELVRPAVANVDQIAIIVAAKAPNPDYMLLDKLLI + TAETRNIRVLICVNKIDLDDDTAKIVRNAYSPAGYDVIEISSVRNIGYKRLKEELKGH + ITVFAGQSGVGKSTILNHIMESWVMETGSVSNKIERGKHTTRHAELLELKYGGYVADT + PGFSSFEIIDIPYNQLERYYPEFLPYINTCRFNSCSHITEPGCRVIEALERSEIDNNR + YQRYIQLYKALKDIPQYKGKKTESRRVIK" + gene 1872740..1873408 + /locus_tag="Ccel_1537" + CDS 1872740..1873408 + /locus_tag="Ccel_1537" + /inference="protein motif:PFAM:PF00834" + /note="PFAM: ribulose-phosphate 3-epimerase; + KEGG: cth:Cthe_0576 ribulose-5-phosphate 3-epimerase" + /codon_start=1 + /transl_table=11 + /product="ribulose-phosphate 3-epimerase" + /protein_id="ACL75889.1" + /db_xref="InterPro:IPR000056" + /translation="MIKIAPSILSADFSCLGSEIEKIDKNGADIIHIDVMDGHFVPNI + TIGPGVVKCLRKYTDKPFDVHLMVSNPDEYIEQFAQAGADIITVHAEATKHLNRTIQI + IKNCGKKAGVALNPATPLNVLDFVLQDVDMVLIMTVNPGFGGQSYLPHSTKKISDLKN + MMIRNTLVADIEVDGGIDVNNINVVTKAGANVIVAGSAVFKQDNVGEAIRSLKMNSYN + RNTL" + gene 1873434..1874069 + /locus_tag="Ccel_1538" + CDS 1873434..1874069 + /locus_tag="Ccel_1538" + /inference="protein motif:TFAM:TIGR01378" + /note="TIGRFAM: thiamine pyrophosphokinase; + PFAM: Thiamin pyrophosphokinase catalytic region; + KEGG: cth:Cthe_0577 thiamine pyrophosphokinase" + /codon_start=1 + /transl_table=11 + /product="thiamine pyrophosphokinase" + /protein_id="ACL75890.1" + /db_xref="InterPro:IPR006282" + /db_xref="InterPro:IPR007371" + /translation="MKVVCVCNGSISDYDKLKKYILASDYIISVDGGASHLRKMGIDP + DILIGDFDSANPQDLDYFIGKGIEVFKFPVEKDMTDSELAIEKAFELGAKELVFLGAL + GTRIDHSFANIMLLKKMLDRGLKGSIVDEHNEIYMFDSDFSLSNKEGCKLSLIPITEK + VTGVSTKGLKYPLNNATMVLGTSWGVSNEFGKETAKVTIVSGILLACLSRD" + gene 1874138..1874213 + /locus_tag="Ccel_R0040" + /note="tRNA-Ala4" + tRNA 1874138..1874213 + /locus_tag="Ccel_R0040" + /product="tRNA-Ala" + gene 1874373..1874816 + /locus_tag="Ccel_1539" + CDS 1874373..1874816 + /locus_tag="Ccel_1539" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: cpy:Cphy_1822 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL75891.1" + /db_xref="InterPro:IPR000182" + /translation="MEELFLLKIKKQMLEDCVDLYIETFTKEPWNDTYESREQVVKFF + NNHFNNNYFIGYAALLDDKMVALSIGMKKPWIKGFEYYIDEFCVSYKMQGRGIGSWFI + KAIEEDIKEQGINGMILNTEKDYPSQRFYEKNGFKKLGDLIVLGK" + gene 1874991..1875302 + /locus_tag="Ccel_1540" + CDS 1874991..1875302 + /locus_tag="Ccel_1540" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75892.1" + /translation="MSEIIILYVVIFLLVGIVTWIIYELIPKLLWCIPVAALIISASL + LFKDINLSTSEPTFARKWEFYFHNDWSMGFYLFYLPIIVISVLTTVFAYLLKHVRSKS + D" + gene 1875572..1876048 + /locus_tag="Ccel_1541" + CDS 1875572..1876048 + /locus_tag="Ccel_1541" + /inference="similar to AA sequence:KEGG:DSY1230" + /note="KEGG: dsy:DSY1230 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75893.1" + /translation="MANEQNKDFNTMLHNNKDMPKLQIITDEKSIEKYGGERMYFAPP + MDYDRVMKKVPLGKVITIGQIRDSFAKANDADFTDPITAGIFVSIAAWASDQRNSEKT + PYWRTLKADGELNPKYPGGIEAQKEKLEAEGHIVVQRGRSNIRYYVQNYQDYLCQL" + gene complement(1876286..1877482) + /locus_tag="Ccel_1542" + CDS complement(1876286..1877482) + /locus_tag="Ccel_1542" + /inference="protein motif:PFAM:PF00872" + /note="PFAM: transposase mutator type; + KEGG: glo:Glov_3450 transposase mutator type" + /codon_start=1 + /transl_table=11 + /product="transposase mutator type" + /protein_id="ACL75894.1" + /db_xref="InterPro:IPR001207" + /translation="MSEKIIQLNEGIIKEELKNLVRSSVEETLNNLLDKEAEDLTNAA + KYERTQERQGYRSGHYTRSLQTTSGEVTLRVPKLKGVPFETAIIERYRRRESSVEEAL + IEMYLAGVSVRRVEDITEALWGTKVSPGTISELNKKAYVHIENWRNRPLQDGKYPYVY + VDGIYLKRNWGGEYENVSILVAIAVNQEGYREVIGAREGMKEDKASWKEFLQWLKGRG + LDGVKLIVGDKCLGMLESVNEVFPEAKYQRCTVHFYRNIFSVTPRSKMKLVAKMLKAI + HAQESKASAREKAKLVAEELKSMKLREAAKKLEDGIEETLTYMEFPYEHWTRIRTNNT + IERLNREIRRRTRVVGTFPDGNSALMLVCARLRHVAGTQWGSKKYLNMKHLENMDSDE + SDFIAG" + gene 1878421..1880769 + /locus_tag="Ccel_1543" + CDS 1878421..1880769 + /locus_tag="Ccel_1543" + /inference="protein motif:PFAM:PF00963" + /note="PFAM: cellulosome anchoring protein cohesin region; + Fibronectin type III domain protein; + KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome anchoring protein cohesin region" + /protein_id="ACL75895.1" + /db_xref="InterPro:IPR002102" + /db_xref="InterPro:IPR003961" + /translation="MNYKKVLFTCFFLLALVIPVSANATTEKNIIDLSKWQNVGINYS + GSEPAPIWKVNSTNTAVTQTLNARPAVFMGDMECANNSVRGSFSVDTTSDNDFVGFVF + GYKDSGHFYLFDWKQSDEDFHGLGKQGMSIKKVNTNTSLSDSDLWPTSNTDKVKVLYH + NNITYKDQMLYNFTLNFTDKGSFNIVIKQGNTVLDSITIKDSTYTSGKFGFYNYSQEM + VTYSVSEFEKLPPVVKVTSTQNEKVDLSWTAVEGATSYNIKRDTTSGGPYTTIGQSTS + TTYTDTTVANGTTYYYVVTAVNTGGESENSNEVSAKPIAPAKAPINLVAKANNAKVDL + VWSASQSATSYNIKRATTAGGPYTTIGQSTSTTYTDTTVANGTTYYYVVTAVNAGGES + ENSNEVSARPIAPAKAPINLVAKANNAKVDLVWSASQSATSYNIKRATTAGGPYTTIG + QSTSTTYTDTTVANGTTYYYVVTAVNAGGESENSNEVSAKPIAPAKAPINLVAKANNA + KVDLVWSASQSATSYNIKRSTTAGGPYTTIGQSTSTTYTDTTVANGTTYYYVVTAVNA + GGESENSNEVSATPTNPTVTLEVTSVDKAKLDDEITANIVIHNAVNICAEDLKISYDT + SKLQFINAENADGMKIYKEDDIAAGVKRYITACLGKANAANGDKILLKLKFKAIDKGE + AKIDITNGRIADNVTLEMDVSQENCGEKTILIEGVKDVNRTGEYTLLDLGIDAWYYGY + AAVDTDTSKYDADQIINGSIDDDDLTEIVAQILANTNYSANK" + gene 1880960..1882234 + /locus_tag="Ccel_1544" + CDS 1880960..1882234 + /locus_tag="Ccel_1544" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS111A/IS1328/IS1533; transposase + IS116/IS110/IS902 family protein; + KEGG: swo:Swol_0724 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL75896.1" + /db_xref="InterPro:IPR002525" + /db_xref="InterPro:IPR003346" + /translation="MKRTQNEKILQIKFETLVVGIDIGKETHYARAFDCRGLELSKLL + KFSNTNQGYEALEDWMQTVMKEHSKTEAIVGFEPTGHYWFTLGDHLQRKGHRLGIVNP + FHVKCTRELDDNSQTKNDKKDPKTIAMLVKDGRFRDVYIPEDVYQELREAVSERERLL + EQLIGLSNQVIRWLDIRFPEFNEVFKDWTGDAAWLTLKNYPTPAKILSAGAPAIVGTW + SKEMKKPSIKRAEKLVRLANVSIGRTAGSEAAEAALQNLLTQYEMILKQKQDTERLMQ + ELLMKVPNASKLVDIKGIGMVAAAVIVSEIGDISRFKDPRQIQKMAGLSLRENSSGKH + KGKTTISKRGRKRLREGLFRAIITILATNQEFRMLHQKNLGREKNPLNKMESIIALCG + KLIRVIFAILTKGSDYDAGKMIEDMKASMKAA" + gene complement(1882802..1884928) + /locus_tag="Ccel_1545" + CDS complement(1882802..1884928) + /locus_tag="Ccel_1545" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase A domain protein; Diverse 7TM receptor + transmembrane region; + KEGG: amt:Amet_1771 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL75897.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR011623" + /translation="MNFKYNFVLIVLAVCSLLIFSGCTNESDKVITAPKSIGGVLDLT + DWDFEKDGIIPLDGEWEFYWEEMLEWSDFQSHIPVKTGNIYVPGSWNKYKIDGKKLSS + NGYATYRLTVVTSSTSNTLALKIPRIFTAYSLWSNDGLLVSSGKIAKNKEGMVPQYYP + KIVTLNPNGTTFQLIVQVSNFSHRSGGILESIKLGTERQIIMARENKLALELLLFGCL + MIMGIYHIVLFSFRKKNLSPLYFGVYCVLIAIRTLFVGEIFFIQLFPDFNWELQHKIQ + TLTFYAGVPIFATFVNSVFTDEFPKSALKFSQAAGALFCLLVLLTPARIFTYFNPLYQ + VITLIVIIFVVRSFILACARKRSGALIFTIGGLFFILTALNDIVFLSIPFNDNNLPYL + RYIIVTGNLSSLGLIILVFSQSIMLAANFSKAFSQVEVMSEQLIIADKQKNTLLSSLE + DKVRERTMDLEESNRQLESVCKNLSLMERTRKDLLTSISHDLRTPMTLIRGYTEAFLD + DMVNNKEDQKKYLKLIHNKIIGLSNLTDNIFELSQLESREIKLELQKVSMADIMAKLD + SKYRYDVENAGLNYIVEIPDEALDYIYIDINQMDRVFSNLIYNAIKHTPKGSITVTSS + LSGDYVLYCISDTGKGISHDDIPYVFDRFYTGSKSRNSSSSGGGLGLAIVKEIVEYHG + GSVRVKSTPNEGSSFIVTISRSLELL" + gene complement(1884985..1885698) + /locus_tag="Ccel_1546" + CDS complement(1884985..1885698) + /locus_tag="Ccel_1546" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: amt:Amet_1770 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL75898.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTN + SHNPDLIILDVLLPDTNGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYIT + KPFSPSELVARINAHLRRNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLT + VKEFEILSLLSQHPNMVFSLTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPK + LIVTIKGIGYKLDTTAPES" + gene 1886034..1895996 + /locus_tag="Ccel_1547" + CDS 1886034..1895996 + /locus_tag="Ccel_1547" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: PKD domain containing protein; S-layer domain + protein; + KEGG: swo:Swol_0298 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL75899.1" + /db_xref="InterPro:IPR000601" + /db_xref="InterPro:IPR001119" + /translation="MRRYYKFFCFFLAVVYFLTCFNLSIGINGVQNNIAYAESNLTEA + VWIPRDSGTTQNVNAVVYGAGLFVAVGNSGTIITSIDGSEWNIQPSGTASNLKGIIYS + GSLYVAIGDAGTIMTSQDGYSWEKRASGTSKNLNAIAYGGGTYVIGASSEMTNKANIL + RSNDGIDWTKMSVESYGGASWLSMSRAEYLDGNFYVGGNYGNFYFSSDSTATSWNYKR + DSSVGGSLGNAVYGNGFYVTSISDSSTKYFESVDNGAGVTLKDTSGGRVVRFLENNFY + FGCLDGKIKMGATTADAIEWQETNTPETTSDINEITYAGDRFYAIGTEGLIMESFDGQ + NWFAVNSFTTNNLTKIARSENMLIAVGSKGTISTKRLDGTIKDTDITVLDKYRLTEVD + ILGANLSAGNVTEDLNLMTAGENGSTISWSSDRLDIISSEGKVTRPPYSGANAEVVLT + ATITCGTSTEIKSFTVTVIEQDEVVDYDAASVEADIAVLELTFAEGDSSASVTQPLGQ + LPAFGANGTTITWTSNNTGILSNDGQILNRSSCGDSDVLLTLTATVKKGGISGAKAFP + LLIKKLEQTDEQAVAEDADAIDISAILNGNTDSQSITGDLILPTAGERGSAITWSSNN + PTVISNEGKVTRPTYNTGNTNVTLTATITKGGISAERVYVFTVIRNEQTDEQAVAEDA + DAIDISTILNGNTDLQSITGNLILPTAGERGSAITWSSNNPAIISNDGRVTRPAFSTG + NITVTLTSTIAKGKVSIERKFSFTIVKNDQTDEEAVEAYSRMINDRHLLSGNESLLKV + VENLTLPTKGAFDTTIFWSSSDSSVISNTGVVTRPAYELQDTCVTLTATISKGTASKT + KAFKITVIKMPDTTAPVVVTTNPQDNKYVSTFTNVELTFDEDITLSAKADDIKLRYKA + SKWSWFKKITVDVYETVSVSIDQKNPKKLIIDPDKKQLKGNTEYTFVLPVDAVCDMSR + NSNSEVKLSFTTGTEDKKAPDFSSINPKDGETKVKADRIIEISFDENIYPSKKFSSIR + LEASGQKVPCSIITSGSKVIMTPENPLVENQKYTVVLPYDSVEDKGGNKYSSIKSLFE + DEVKFKFTTAVEFSEPKVQSIFPVDGAKKISTMSQLMIEFNENITKGTAFDQVAIKGP + ASENVGAIISISGRYLIINPKNSLKKNTAYSIVIPEGSLKDNNENTISDSFEYRFSTD + SGLQLIEAEPGSKENEAPIDKSLLFTFNSNIHKGNNFMSISLKDLGGNTVDIKADLQQ + NDLFITPVSPLTKGTKYYLKVPEGALKDAGGTENGALLYSFGVASELDINWESIRLES + TRYPIENHEVIFDASSLTSKFEVAGRKVLDYKWSFGDGKTAVGERVSHIYSEPDQTYN + ATLTIVDDKGIAYTRTIWLNTKQDYGLYELEVSPGNVILPDAINDAEAVEFEYRTRTT + KQGNNISNSTVIAQLLDTNGKVLKVISELTDSDGYATFRIKKPKGYTSKVLNVKIIQS + VNNKEVYRQIIYEGFKDNIAIEFLIYDMDKQTLLDPSKRDKLDVYVNGELKVANKVYD + NPGKAHPISKVLSKDQPYKFRLEGLRTGCQQIEIKNIPYYCNFEQKVIVRNTGSKVAM + EKFDVKRFIPSGKPVVSRVYSDVSDSRDNESSKVFKGVPVEYKVSVNWADHEPGYFQF + IYEDKNGKQKAINTKGYTYLNKIEIPNDCKEGSRLQVIAWSVDGTKSNPLDLKVKIVS + LPEFATAKVVNGKFEVKLTQSLPGVQTPKAVKSFPLIGGSTIGFSTDHFGVEGEMDEE + GTLTLAIKGKGEKTKEWNKEELLKNGKKKELEIAGVGIEGAMGAQFKYKYDNEKGEWV + FAGGGVVIEIEGSASYTQHFTIAVIPCYLRGKIVLGLGTELMAEKNFDEGDYDFKGSI + EVSPSVEIALGAGGGSLKVEGYLGGVLDIGFEFPSTEYAVNAKVTGGIRATAFLFEYE + KKCLSYEWNIKSGKVRSMMLAPRLYEFPETGQFKLMGRQYLTEQTNWNGFTDPLRSMR + MFSLYGVVPEQGTSNITDRTLQSNVFPNTDQILLNSGDKTIMVWVSDNPKRSALNRTE + IVYSVLADGVWSEPQPMNIDNTADFKPVMSKLDNGTLMAWENVGKVLEDDILSGENSG + TGSDEISDISQLNGLTEMVSSMEIGVASVSSDLSGWENSRNLTNDIYLDHSPRIASSG + NTAILTWIKNESNDLTGSAEKPNKIMFSKWDGTLWSEPESICEGVGAIVDSSVAYDGD + RGLYTYTVDSDGNFATEVDQEVYVLFFDAGGWSTPLKVTENNVQDANPSAFFLNGKAF + LMWYQDGSIVYTKDIEQGSSIKVPTVSNADGKFKTTVSITSEAAIVYTETTNGGQNIY + TTLYDSTNDVWSEKIQLTDTQNNLASSLSPVFDSEGNLIVAYSKVGLYKSVVDGIEYN + SIGNTDLSVVTLYPKHDLSIEKGGIATLEENPVSEMNATITAEIRNEGEYTERNVEVD + FYNGNPSNGGQKIGNTYVITQPIAPRTSVMAQMEWAIPEPDGIQDVYVVIDPNEKLYD + ADRGNNIAYNSLVRADLLISKMDYIQSIIDSDESTDSERTGYMNFLVSADVSNTGSIP + VNNATLTLYENGTDGQIIEKSEIDRLEPGETKTVYVMWDANGKPFENNRFTVAGELGA + EGVQEYSLDNNIYYKSIKTRSLTVDRYTPGINEMDVPLDSNVTLEFNMDIFKGGFYDN + ITFVDSEGNEIAFTKTIEDNRLILDPEELLKHGGTYAVSIPVNAVNGYDGSVMNEAFL + IKFTAERLYPYPVVKFIYPQDKMGGIPVNSDINIKFSGSIKAGGEYAGITLTDSQGQE + VDIKKSINNDMLKIDPIAYLDDNSTYFVAVPFGAISYMNGITTEDEYTFSFITSNQIS + SRPETEPGSKPDSKPQPQPQPEPTPNPGSTKDKAGVGDSHKETVSISISAKIEISDST + GIIKASVDKNMIETALSKVVDELEGAAKAKAEIVINLDGEGAKEVLLQIPKDAFDKIA + EVAGVALKLNKGMATVKFDEQAINYISSIENAGDINFSIKKVEPETLTREAQDKIGDR + PFIDLQILAGESEITSFGGGKVSVDIPYTPKADEKHYAILVYYIDGEGRLISTMGQYN + PESKTVGFTTLHFSKYAVGYNDVRFDDVGEESWYSEAIGFLAAREVINGIGNGSFAPG + KNISRGDFLIMVMNAHGIAADSTISDNFADAGNKYYTPYLGTAKRLGLVSGIGSNMYD + PESAISRQDMAVILHRILERIGKLPTEKKGYTLESFEDAGNISGYAINSMKLFVETGI + LNGDGKKLHPVDISTRAEAVQIIYNLQQ" + gene complement(1896179..1897009) + /locus_tag="Ccel_1548" + CDS complement(1896179..1897009) + /locus_tag="Ccel_1548" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; Cupin 2 conserved barrel domain protein; + KEGG: cpy:Cphy_0464 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL75900.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR013096" + /translation="MIPFYENRVEDLLVFRENSLDFLPHLHAQLELLYVEDGEIEITV + NGCTRLLKKGDLSVSFPNSVHSYNTPPHQERMNCIVVILNLILAGDFINTLLKFHPKV + PFISSDNLHKDVPYAINTLYEEYNYAQSKPVYTPICKAYIQIIISRLLQQMELITNTD + VNYFDIIFDIINYINENYMQPISLNDMSRALGVGKHYLSRVFSDKIKISFSDYINGIR + VSWACNMLLNTNKNITQIAYDCGFQSIRTFNRAFHKACHVSPSKFRKSQVAALPREID + " + gene 1897151..1899085 + /locus_tag="Ccel_1549" + CDS 1897151..1899085 + /locus_tag="Ccel_1549" + /inference="similar to AA sequence:KEGG:Pmob_0233" + /note="KEGG: pmo:Pmob_0233 putative outer membrane + protein" + /codon_start=1 + /transl_table=11 + /product="putative outer membrane protein" + /protein_id="ACL75901.1" + /db_xref="InterPro:IPR006626" + /translation="MNKEFHVAVTGCDFAEGTKENPFRTISKAAKVAESGDKVIVHEG + EYREWVKPEHGGESNINRITYEAAEGEKVVIKGSEKIQSWENLEGTVWKVVLPNSFFG + DYNPYKEILSGDWLIYKPGIYRHAGDVYLNGVSFYEADSLDEVKNPVVRTGVVDIPWT + QNFEKILHPEQTIYRWYSEVDDEKTTIYANFHGVDPNKELVEINVRKCCFYPTITGLN + YITVRGFEMAQAASPWTPPTADQPGLLGANWSKGWIIENNIIHDAKCSAISIGKEAST + GHNLCTRKHRKPGYQYQMESVFRAKQIGWSKEKIGSHIIRNNVIYDCGQNGIVGHMGC + VFSEIYNNHIYNIGVKHEFFGYEIGGIKLHAAIDVKIHHNRIHNCSLGTWLDWQAQGV + RVSNNLYYNNDRDLMIEVTHGPHLVDNNIFASDYSLDNFAQGGAYVNNLYCGKLYLSK + VLDRSTPYHFPHSTDVAGSAVVYGGDDRFYNNIFVGGKDIENSGTAGYNPHTASFEEY + VSDVLSHGVGDHEVFMLTEQPVYISSNAYLNGAEGFDREKNGYTNKLFDPNVKIVEEG + NEVYLEMNVEKDMLEIPTEIISTETLGNVRIVDAIFDDPNGNSIIMDTDYTGMARTAK + PVVGPIEGLKSGFNRIKVWG" + gene 1899237..1900685 + /locus_tag="Ccel_1550" + CDS 1899237..1900685 + /locus_tag="Ccel_1550" + /inference="protein motif:PFAM:PF00704" + /note="PFAM: glycoside hydrolase family 18; cellulosome + protein dockerin type I; + SMART: chitinase II; + KEGG: bcl:ABC0646 chitinase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 18" + /protein_id="ACL75902.1" + /db_xref="InterPro:IPR001223" + /db_xref="InterPro:IPR001579" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR011583" + /translation="MSRLTSIFLIISLMLSCTGISSAVANDTVNSMEQTYRNVAYFTS + WGGYQRAVEVGDINPSLLTHINFAFANLSADGTITVGDPWIDTQKPYGDDTWETELRG + HFGQLIRLKQQHPHIKTLISVGGWTWSENFSDVAASDSLRKACAKSAVDFVVKYDFDG + VDLDWEFPVQGGKNIPHRVNDGDNYILLLKEIRTALDLQEKIDGKDYLLSIAGASYSK + FLDDCKIAEMMHYLDYINVMTYNYHGTWDDITNHNTPLYTNSDDLCVSASIENYISAG + VEPADINLGLAFSGKGWINVTDPNGSGLYKSGTAPTSAGYGSGTFEAAVFDFGDITEN + YINKNNYVRYWDDIAKVPYLYNGSTFITYEDEESIGCKADYIKKMGLGGAMFWEFSYD + KNLVLQNVIAKKLNINKIPEVVFYYGDVNEDGIIDSIDFALLKSFLLGKGALQNMDIA + DVNNDGNIDALDLTCLKMILLEKNTPKPIELK" + gene complement(1900747..1902498) + /locus_tag="Ccel_1551" + CDS complement(1900747..1902498) + /locus_tag="Ccel_1551" + /inference="protein motif:PFAM:PF02156" + /note="PFAM: glycoside hydrolase family 26; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0032 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 26" + /protein_id="ACL75903.1" + /db_xref="InterPro:IPR000805" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /translation="MKKIFGRVLSLLTGVALGCTILTTVPAPVQAAYSLPVNVEAEAC + SLGNGATVATNVYGTEYPGYSGDGFVWASNSGTITLEVTVPTNAMYELSTRCWMYLGN + QGDSRLQVVSINGVPQGNFYIPNKGGWMDYSFGFFYLEAGTTKIEIGSSGSWGFILYD + KISFDYADMPDLNIEPTLCDPKATLETKSLMKYLTSVYGNHVISGQQEIYGSGNDGDY + ELEFNYIYDKTGKYPAIRGFDLMNYNPLYGWEDGTTERMIQWVKEKGGIATACWHINV + PADFTSYKLGDKLDWTKCTYKPTSSFNTANCLDKTTKEYAYLMLAIDEMAKQLLILQD + AKVPVLLRPFHEAEGNNNTDGSGAWFWWGSAGSDVYKELWKLLYTTLTEKYGIHNVIW + EVNLYTYANSLEWYPGDKYVDIVAYDKYEGSPYTWKTSAASTAFLTLVNDTNDTKMVA + MTENDVIPDIQNIVNEGAWWLYFCPWYGDFITSSRYNDPVLLNTIYNSEYVVTLDELP + KDIYGSAPSDEVAGDLNSDGNFDAIDFGLLKSYLLLNTPINLTTADVDGNGQVNALDF + SYMKQKLLGKIDKFPIE" + gene 1902782..1903147 + /locus_tag="Ccel_1552" + CDS 1902782..1903147 + /locus_tag="Ccel_1552" + /inference="protein motif:PFAM:PF06803" + /note="PFAM: protein of unknown function DUF1232; + KEGG: cpy:Cphy_3605 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1232" + /protein_id="ACL75904.1" + /db_xref="InterPro:IPR010652" + /translation="MKFKERAKQLKKDIPAVFLALSKKETPPLARVLGIITIGYALSP + IDLIPDFIPVLGYLDDIIILPLLVAATVKAIPRELIEQCRLESEQIWKDGKPKKWYFA + LPIILVWVIIITLVIKALL" + gene 1903321..1904154 + /locus_tag="Ccel_1553" + CDS 1903321..1904154 + /locus_tag="Ccel_1553" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cau:Caur_2780 + endonuclease/exonuclease/phosphatase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75905.1" + /translation="MKHSISVNHKKSQRFLSAIIILIIIITSYTPQGSMTANAATANH + LVISEVYGGGGNSGAKYKNDFIEIYNPTNSTINLSNWSVQYASSTGSFNNITRLSGSI + GPHKFYLVKESGGTGGSISLPTADATGTINLSATSGKVALANTTISVSGANDPAVIDF + VGYGSANDYETTPVPALSNIESGERKDNNGGTVESQGNGWDTDNNYADFVKTDNVNPQ + NSSNLAEPQSQIDSPVLSNIQPTKITSDSVIITWTTDQAASSIVNYGTNTSYGSIGFR + Q" + gene 1904156..1905289 + /locus_tag="Ccel_1554" + CDS 1904156..1905289 + /locus_tag="Ccel_1554" + /inference="similar to AA sequence:KEGG:CPF_1618" + /note="KEGG: cpf:CPF_1618 OB-fold nucleic acid binding + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="OB-fold nucleic acid binding domain-containing + protein" + /protein_id="ACL75906.1" + /translation="MSTSHSVYLTGLVANTTYHFTVQSTNLSSLSSTSSDYTFTTLSS + TPPNKDYNFYFGQLHSHTSNSDGQGTYSSAYTYARDTAKLDFFAITDHSNNFDNYTDW + TKSQEWANMKNTANSFNKDGVFAAIAGFEMTWSNGTGHMNTFNTEWFESRLTTGMNLQ + TYYNKIAADTGSISQWNHPGTKFGDFNNFGYYSAATDKAIKLIEVGNGAGVPGSSSYY + PSYSYYTTALDKGWHVAPSNNQDNHSTNWGTSNDCRTVILATSLTRKNVFEAIRNLRV + YASEDKDLEISFSINNSIMGSTLSNPSTLNISITGYDSEASDTISKIELISDGGIVSA + SKIFSSNNVSWNPQLASKYKYYYVRITEKDGNIAVTAPIWTGK" + gene 1905325..1905855 + /locus_tag="Ccel_1555" + CDS 1905325..1905855 + /locus_tag="Ccel_1555" + /inference="protein motif:PFAM:PF01569" + /note="PFAM: phosphoesterase PA-phosphatase related; + KEGG: tpd:Teth39_0213 phosphoesterase, PA-phosphatase + related" + /codon_start=1 + /transl_table=11 + /product="phosphoesterase PA-phosphatase related" + /protein_id="ACL75907.1" + /db_xref="InterPro:IPR000326" + /translation="MSGLKGILYVADINTLLIFNNSIRCKLLDIIMPKLTHLGSATAT + ISTCLMITVMGSGEVRKAGVQALLALALSHLFVRLLKNNVCRLRPKDVLYNINTFNVA + LDYYSFPSGHTTAAFAIATTLALNLPILAVICFPIALVIAISRLYLGVHYPSDVLAGI + AIAIFSSVVLQLIISH" + gene 1906057..1906365 + /locus_tag="Ccel_1556" + CDS 1906057..1906365 + /locus_tag="Ccel_1556" + /inference="protein motif:SMART:SM00418" + /note="SMART: regulatory protein ArsR; + KEGG: ccv:CCV52592_2058 ArsR family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, ArsR family" + /protein_id="ACL75908.1" + /db_xref="InterPro:IPR001845" + /translation="MKTLDLVKIFKALSCEQRLNLFKVLYEWCEEGECKDGEYTCTDG + IEKCFTKACCCINLSKSTISHHFKELQNAGLITYTRKGQSFKCKINKEAIIAIQSFLK + " + gene 1906463..1907887 + /locus_tag="Ccel_1557" + CDS 1906463..1907887 + /locus_tag="Ccel_1557" + /inference="protein motif:PFAM:PF04262" + /note="PFAM: glutamate--cysteine ligase; + KEGG: cac:CAC1539 gamma-glutamylcysteine synthetase" + /codon_start=1 + /transl_table=11 + /product="glutamate--cysteine ligase" + /protein_id="ACL75909.1" + /db_xref="InterPro:IPR007370" + /translation="MNWKFDKVLDVINKTDSKLLLNGKWGVEREAQRVNTNGCLALTD + HPAAFGNKLLNNKVTTDFAESQIELITPPMSSVDEVYKFLKLLTLEVIHELKSELLWP + FSMPPILPSEERIPIAKYDDTPEGREKEIYRLGLANRYGKKMQMISGIHFNLSFSEGL + FDTLYKYFGNGENRNEFIDKSYFAMARNFLRYRWLLIYLFGASPIADITFNSEIPNAT + SLRVSQFGYSNAEQGNFIVSYNDKSEYLQNLRKLLITKSEKYSKIGTFRDGKQIQLNE + NILQKDSEFYSTIRLKQVTEEGESQLDAIEKRGVSYAEVRILDINPFEITGISLQQMY + FLQVFMLFCLFEESSYIQNNELKLVNKNHNLVSISGRINKLLLNHNTGGQILIEDWGR + NIFRKLFKLSNIMDTVENDGKYLNCVLTEYFKLTDRLLLPSSKILNQMELNGDSFITF + GIKKALHYKNQNRLGEGLKNVEGL" + gene 1907871..1908857 + /locus_tag="Ccel_1558" + CDS 1907871..1908857 + /locus_tag="Ccel_1558" + /inference="similar to AA sequence:KEGG:CAC1540" + /note="KEGG: cac:CAC1540 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75910.1" + /db_xref="InterPro:IPR011761" + /translation="MLKGYEALELSTQMIIKEAINRGINIEVLDWDDNFVRLTKGRRI + EYLKQATRTSVDTYISPLIMENKEVTKRILAENGLSVPKGITIKKIDKFNTEVSQFKG + KDIVIKPKSTNFGQGVVILKQPFTESDVQNAIEQAFEFDHSVLIEEFISGKEYRFLVI + GEEVAAILHRVPANVTGDGKHTIAELVNEKNKHPLRGKGYVTPLEKITLGQIEKDFLK + FQGKTFDTIPNINETVYLRENSNISTGGDSIDFTDEIIDAYKTIAVEAAKAVGAKICG + ADIIIRDINDSPNNNNHSIIELNFNPALHIHDYPYKGKNRQVEKKVLDLLGF" + gene complement(1908983..1909795) + /locus_tag="Ccel_1559" + CDS complement(1908983..1909795) + /locus_tag="Ccel_1559" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75911.1" + /db_xref="InterPro:IPR001584" + /translation="MCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRET + YGSPRITKALKNEGINCGKNRIAKLMKENNITAKTRKKFKATTNSKHNYPVADNILNQ + DFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQ + AIGRQRPSNGVIHHSDRGVQYASKEYQKVLKSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(1909843..1910127) + /locus_tag="Ccel_1560" + CDS complement(1909843..1910127) + /locus_tag="Ccel_1560" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75912.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDNSFKEQAVRLVTEQGKSVSIVAKDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene 1910532..1910732 + /locus_tag="Ccel_1561" + CDS 1910532..1910732 + /locus_tag="Ccel_1561" + /inference="protein motif:PFAM:PF00269" + /note="PFAM: small acid-soluble spore protein alpha/beta + type; + KEGG: ckl:CKL_3529 small acid-soluble spore protein" + /codon_start=1 + /transl_table=11 + /product="small acid-soluble spore protein alpha/beta + type" + /protein_id="ACL75913.1" + /db_xref="InterPro:IPR001448" + /translation="MANNKKLVPEATDALEKLKYEVAAEEGIELKDGYNGDITARDAG + KIGGNMVKKMIEYAEKHMKDSE" + gene 1911003..1912640 + /locus_tag="Ccel_1562" + CDS 1911003..1912640 + /locus_tag="Ccel_1562" + /inference="protein motif:PFAM:PF01832" + /note="PFAM: Mannosyl-glycoprotein + endo-beta-N-acetylglucosamidase; + SMART: Lysozyme subfamily 2; + KEGG: cac:CAC2325 N-acetylglucosaminidase domain- and ChW + repeat-containing cell wall hydrolase" + /codon_start=1 + /transl_table=11 + /product="Mannosyl-glycoprotein + endo-beta-N-acetylglucosamidase" + /protein_id="ACL75914.1" + /db_xref="InterPro:IPR002901" + /db_xref="InterPro:IPR013338" + /translation="MYAKANAKKQDKIQNKGGVLQKAKSPNRRNIKQQNPTEIIQRIR + INPESMTQKDVVQLQHTIGNQAVQRLMSRLHNKNGYNAEDKPIQKKEEKKKEIQSISE + RNSPLGLPINLKEGLESLSNIDLSDVQVHYNSDKPQDVGALAFTQGNNIHIAPGQEKL + LPHEGWHTVQQKQGRVQPTMQMKTGTLVNEDAGLEKEADAMGSRAERESSGNKTLQFK + GYSKLNLPDYNENVIQKKDNASKIGKKVIYNQQTKNYKIINSKDGYEKDWSETPPKCM + QIVYSKTLKYALCNNTGEIASYLTSGWYTDPLWAQGIKVSSYDVSLQDSLNKQMKLSA + KPQTQKNGKWVNAETDQVKKYLDPSNFNDGVSKYQFLDLSASADISEKEMTKFLSGKG + VLSGHAKTYLDAAKKYNVSEVYLAAHSALETGNGTSELAKGVKVEGVKVYNMYGINAT + DKDPVGEGSKYAYKMKWTSIDKAIDGGAEWISKNYINSSSHSQNTLYKMRWNPASPGE + HQYATDIAWAVNQTSSLKKMYDSFPSASLKFDIPVYK" + gene 1912727..1913419 + /locus_tag="Ccel_1563" + CDS 1912727..1913419 + /locus_tag="Ccel_1563" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75915.1" + /translation="MKKLVLFMLIAASITICGCDNKTSIDSSNRNSGMRQAATLKIKT + NEQTNNRPADKTSENSNSTQTVNSAKKDIEPIKVSDFIISDGIDSIKLDSPFKEFKYH + KPEEKIDNNYVGETTSGEYTYKTYMHKYPDFDLYVSNLNYNLKNRNFDEYYITQITLN + NSNFKTARGIAIGSKLENVYNAYGSTEMSNSDGIVDISYGFEDMELLFAIDKKNQNVK + EIVLMIKPENTN" + gene complement(1913719..1913973) + /locus_tag="Ccel_1564" + CDS complement(1913719..1913973) + /locus_tag="Ccel_1564" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75916.1" + /translation="MKNEIQKNFRKQMDEAEIKLHEDAEKKNTGIFTNILFELRFYGY + KSEYKPPSKLLRAVIYIGLPIAVLLLISTIIDFIKLITKS" + gene complement(1914012..1914239) + /locus_tag="Ccel_1565" + CDS complement(1914012..1914239) + /locus_tag="Ccel_1565" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ckl:CKL_3317 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75917.1" + /db_xref="InterPro:IPR001387" + /translation="MDIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDI + KTLVKLADYYMVSLDMLVGRIKIQGIEKAAV" + gene 1914421..1915443 + /locus_tag="Ccel_1566" + CDS 1914421..1915443 + /locus_tag="Ccel_1566" + /inference="protein motif:PFAM:PF02486" + /note="PFAM: replication initiation factor; + KEGG: efa:EF2528 Cro/CI family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="replication initiation factor" + /protein_id="ACL75918.1" + /db_xref="InterPro:IPR003491" + /translation="MKISVKNCMIDWLEFSVFEMTEKSVLYALGLEHFNFEVKKGRFY + GRVLSFENIITISSQYFGNGGVEHVHVRFTGKGCRLLERIYGTTDLRSEIRLRFILSD + VKVSRMDIALDYNYKFVVDYFESVLNERLTGVKVVEHIGSLKSGLTLYLGSRKSEKFF + RLYEKDFEQNDFENYKDRLELVLKNQYATYELFNENELIKIVSTYMNDIEWQDTERQR + LWNGMKNGECEISPKIRHKKSTLKEKGEYILTTYAKTLKAYAEQYGTKDISSAIHDAV + LSEKEIRLINNEKVLKLMKYRKQARQKDKQVQESVNEIEIKKGILLDNLIANNQSDKF + EQMRIC" + gene 1915596..1915889 + /locus_tag="Ccel_1567" + CDS 1915596..1915889 + /locus_tag="Ccel_1567" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75919.1" + /translation="MANFLVMNVNHSQGTSKKSGKPYDFTTLTAYKTKVENSESFKGM + RPMEFFCDSTIFSTVPALPAICEIEYDLEPGYGGQARMTVVSVKLVKKFEFGG" + gene 1916022..1916144 + /locus_tag="Ccel_1568" + CDS 1916022..1916144 + /locus_tag="Ccel_1568" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75920.1" + /translation="MYDMYADLFLKGFGYGLVTGVVCYMFTWGLTVGIRLLKQI" + gene 1916164..1916406 + /locus_tag="Ccel_1569" + CDS 1916164..1916406 + /locus_tag="Ccel_1569" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75921.1" + /translation="MRKVSKKFVGTMVASLVVVSTCISIFAEDSDTVTAMGTAMSGVK + SDGISALSTVAPYGIAIMGAFLIWKLGVKFFKSLAK" + gene 1916467..1917735 + /locus_tag="Ccel_1570" + CDS 1916467..1917735 + /locus_tag="Ccel_1570" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75922.1" + /translation="MRKKLISIALSIMLIFNSMSVQYASANEVVEVLKTVSVNGVALG + AGALGGAVALLAVLGVYVASENDAVRKAAVDLYNYCDDTNKQAIADMSGYYNLVSDSL + YTQAQQFVNTAYSVGNSVKRFIDYTINADGTVSDFNGYTDALVNAEMGVSARTDGQYV + YYDVGDYHDKIDYGPSYYNAKLPISIEYSHTTMRQYTTSYSGVDYNRTEYTFRINVYN + ADHEFVRQGYVQGHIDTLASTGVYREAQDANFGLSPDQYYDYTKSGVSVPLPKTASGE + RVIAVPDVVGLEGVEVTGDMCVPVANAIPAEIADTIVEYPETEEPAENLPKVDYPKMS + IPPKLGLTRKFPFSIPWDLKNAVTTLVAEPKCPKWEINWDSEYFVGGGKTVIDFEKFE + TWAKIVRWGVLIVFNIGLIIATRKLIGAGG" + gene 1917737..1917976 + /locus_tag="Ccel_1571" + CDS 1917737..1917976 + /locus_tag="Ccel_1571" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75923.1" + /translation="MAILEKLGSLLMSALTWVVQFLPDSPFQLINNSDVQSFMGTLNW + ILPIGQMVAELQLWISAVAVYYIYQIVLRWIRAID" + gene 1918064..1918738 + /locus_tag="Ccel_1572" + CDS 1918064..1918738 + /locus_tag="Ccel_1572" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ppd:Ppro_1760 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75924.1" + /translation="MIYLYCGTPRSGKSLHTIVDIVHKLRRGQDVIANFIVNDELIRK + KPFRTFMEKTGCKFKDNQFTYKLGKFTYKDNPELTVPFLVDYAKKNHKYGKEGQTLLV + IDECSVQFNPRDFKRADRDAWVKFFQHHGKLGYNVILISQSDGLIDKQIRAFIEYKII + HRKVNNFKIGWIFSLFHVGLFIAVTQWYGVKEKCGSEFFRYRNFYSKIYDSYKMFDDS + MLNEFN" + gene complement(1918837..1919637) + /locus_tag="Ccel_1573" + CDS complement(1918837..1919637) + /locus_tag="Ccel_1573" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75925.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(1919679..1920257) + /locus_tag="Ccel_1574" + CDS complement(1919679..1920257) + /locus_tag="Ccel_1574" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75926.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene complement(1921032..1921286) + /locus_tag="Ccel_1575" + CDS complement(1921032..1921286) + /locus_tag="Ccel_1575" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75927.1" + /translation="MKNEIQKNFRKQMDEAEIKLHEDAEKKNTGIFTNILFELRFYGY + KSEYKPPSKLLRAVIYIGLPIAVLLLISTIIDFIKLITKS" + gene complement(1921325..1921552) + /locus_tag="Ccel_1576" + CDS complement(1921325..1921552) + /locus_tag="Ccel_1576" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ckl:CKL_3317 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75928.1" + /db_xref="InterPro:IPR001387" + /translation="MDIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDI + KTLVKLADYYMVSLDMLVGRIKIQGIEKAAV" + gene 1921734..1922756 + /locus_tag="Ccel_1577" + CDS 1921734..1922756 + /locus_tag="Ccel_1577" + /inference="protein motif:PFAM:PF02486" + /note="PFAM: replication initiation factor; + KEGG: efa:EF2528 Cro/CI family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="replication initiation factor" + /protein_id="ACL75929.1" + /db_xref="InterPro:IPR003491" + /translation="MKISVKNCMIDWLEFSVFEMTEKSVLYALGLEHFNFEVKKGRFY + GRVLSFENIITISSQYFGNGGVEHVHVRFTGKGCRLLERIYGTTDLRSEIRLRFILSD + VKVSRMDIALDYNYKFVVDYFESVLNERLTGVKVVEHIGSLKSGLTLYLGSRKSEKFF + RLYEKDFEQNDFENYKDRLELVLKNQYATYELFNENELIKIVSTYMNDIEWQDTERQR + LWNGMKNGECEISPKIRHKKSTLKEKGEYILTTYAKTLKAYAEQYGTKDISSAIHDAV + LSEKEIRLINNEKVLKLMKYRKQARQKDKQVQESVNEIEIKKGILLDNLIANNQSDKF + EQMRIC" + gene 1922909..1923202 + /locus_tag="Ccel_1578" + CDS 1922909..1923202 + /locus_tag="Ccel_1578" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75930.1" + /translation="MANFLVMNVNHSQGTSKKSGKPYDFTTLTAYKTKVENSESFKGM + RPMEFFCDSTIFSTVPALPAICEIEYDLEPGYGGQARMTVVSVKLVKKFEFGG" + gene 1923335..1923457 + /locus_tag="Ccel_1579" + CDS 1923335..1923457 + /locus_tag="Ccel_1579" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75931.1" + /translation="MYDMYADLFLKGFGYGLVTGVVCYMFTWGLTVGIRLLKQI" + gene 1923477..1923719 + /locus_tag="Ccel_1580" + CDS 1923477..1923719 + /locus_tag="Ccel_1580" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75932.1" + /translation="MRKVSKKFVGTMVASLVVVSTCISIFAEDSDTVTAMGTAMSGVK + SDGISALSTVAPYGIAIMGAFLIWKLGVKFFKSLAK" + gene 1923780..1925048 + /locus_tag="Ccel_1581" + CDS 1923780..1925048 + /locus_tag="Ccel_1581" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75933.1" + /translation="MRKKLISIALSIMLIFNSMSVQYASANEVVEVLKTVSVNGVALG + AGALGGAVALLAVLGVYVASENDAVRKAAVDLYNYCDDTNKQAIADMSGYYNLVSDSL + YTQAQQFVNTAYSVGNSVKRFIDYTINADGTVSDFNGYTDALVNAEMGVSARTDGQYV + YYDVGDYHDKIDYGPSYYNAKLPISIEYSHTTMRQYTTSYSGVDYNRTEYTFRINVYN + ADHEFVRQGYVQGHIDTLASTGVYREAQDANFGLSPDQYYDYTKSGVSVPLPKTASGE + RVIAVPDVVGLEGVEVTGDMCVPVANAIPAEIADTIVEYPETEEPAENLPKVDYPKMS + IPPKLGLTRKFPFSIPWDLKNAVTTLVAEPKCPKWEINWDSEYFVGGGKTVIDFEKFE + TWAKIVRWGVLIVFNIGLIIATRKLIGAGG" + gene 1925050..1925289 + /locus_tag="Ccel_1582" + CDS 1925050..1925289 + /locus_tag="Ccel_1582" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75934.1" + /translation="MAILEKLGSLLMSALTWVVQFLPDSPFQLINNSDVQSFMGTLNW + ILPIGQMVAELQLWISAVAVYYIYQIVLRWIRAID" + gene 1925377..1926051 + /locus_tag="Ccel_1583" + CDS 1925377..1926051 + /locus_tag="Ccel_1583" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ppd:Ppro_1760 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75935.1" + /translation="MIYLYCGTPRSGKSLHTIVDIVHKLRRGQDVIANFIVNDELIRK + KPFRTFMEKTGCKFKDNQFTYKLGKFTYKDNPELTVPFLVDYAKKNHKYGKEGQTLLV + IDECSVQFNPRDFKRADRDAWVKFFQHHGKLGYNVILISQSDGLIDKQIRAFIEYKII + HRKVNNFKIGWIFSLFHVGLFIAVTQWYGVKEKCGSEFFRYRNFYSKIYDSYKMFDDS + MLNEFN" + gene complement(1926150..1926950) + /locus_tag="Ccel_1584" + CDS complement(1926150..1926950) + /locus_tag="Ccel_1584" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75936.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(1926992..1927570) + /locus_tag="Ccel_1585" + CDS complement(1926992..1927570) + /locus_tag="Ccel_1585" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75937.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene complement(1928345..1928599) + /locus_tag="Ccel_1586" + CDS complement(1928345..1928599) + /locus_tag="Ccel_1586" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75938.1" + /translation="MKNEIQKNFRKQMDEAEIKLHEDAEKKNTGIFTNILFELRFYGY + KSEYKPPSKLLRAVIYIGLPIAVLLLISTIIDFIKLITKS" + gene complement(1928638..1928865) + /locus_tag="Ccel_1587" + CDS complement(1928638..1928865) + /locus_tag="Ccel_1587" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ckl:CKL_3317 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL75939.1" + /db_xref="InterPro:IPR001387" + /translation="MDIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDI + KTLVKLADYYMVSLDMLVGRIKIQGIEKAAV" + gene 1929047..1930069 + /locus_tag="Ccel_1588" + CDS 1929047..1930069 + /locus_tag="Ccel_1588" + /inference="protein motif:PFAM:PF02486" + /note="PFAM: replication initiation factor; + KEGG: efa:EF2528 Cro/CI family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="replication initiation factor" + /protein_id="ACL75940.1" + /db_xref="InterPro:IPR003491" + /translation="MKISVKNCMIDWLEFSVFEMTEKSVLYALGLEHFNFEVKKGRFY + GRVLSFENIITISSQYFGNGGVEHVHVRFTGKGCRLLERIYGTTDLRSEIRLRFILSD + VKVSRMDIALDYNYKFVVDYFESVLNERLTGVKVVEHIGSLKSGLTLYLGSRKSEKFF + RLYEKDFEQNDFENYKDRLELVLKNQYATYELFNENELIKIVSTYMNDIEWQDTERQR + LWNGMKNGECEISPKIRHKKSTLKEKGEYILTTYAKTLKAYAEQYGTKDISSAIHDAV + LSEKEIRLINNEKVLKLMKYRKQARQKDKQVQESVNEIEIKKGILLDNLIANNQSDKF + EQMRIC" + gene 1930222..1930515 + /locus_tag="Ccel_1589" + CDS 1930222..1930515 + /locus_tag="Ccel_1589" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75941.1" + /translation="MANFLVMNVNHSQGTSKKSGKPYDFTTLTAYKTKVENSESFKGM + RPMEFFCDSTIFSTVPALPAICEIEYDLEPGYGGQARMTVVSVKLVKKFEFGG" + gene 1930648..1930770 + /locus_tag="Ccel_1590" + CDS 1930648..1930770 + /locus_tag="Ccel_1590" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75942.1" + /translation="MYDMYADLFLKGFGYGLVTGVVCYMFTWGLTVGIRLLKQI" + gene 1930790..1931032 + /locus_tag="Ccel_1591" + CDS 1930790..1931032 + /locus_tag="Ccel_1591" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75943.1" + /translation="MRKVSKKFVGTMVASLVVVSTCISIFAEDSDTVTAMGTAMSGVK + SDGISALSTVAPYGIAIMGAFLIWKLGVKFFKSLAK" + gene 1931093..1932361 + /locus_tag="Ccel_1592" + CDS 1931093..1932361 + /locus_tag="Ccel_1592" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75944.1" + /translation="MRKKLISIALSIMLIFNSMSVQYASANEVVEVLKTVSVNGVALG + AGALGGAVALLAVLGVYVASENDAVRKAAVDLYNYCDDTNKQAIADMSGYYNLVSDSL + YTQAQQFVNTAYSVGNSVKRFIDYTINADGTVSDFNGYTDALVNAEMGVSARTDGQYV + YYDVGDYHDKIDYGPSYYNAKLPISIEYSHTTMRQYTTSYSGVDYNRTEYTFRINVYN + ADHEFVRQGYVQGHIDTLASTGVYREAQDANFGLSPDQYYDYTKSGVSVPLPKTASGE + RVIAVPDVVGLEGVEVTGDMCVPVANAIPAEIADTIVEYPETEEPAENLPKVDYPKMS + IPPKLGLTRKFPFSIPWDLKNAVTTLVAEPKCPKWEINWDSEYFVGGGKTVIDFEKFE + TWAKIVRWGVLIVFNIGLIIATRKLIGAGG" + gene 1932363..1932602 + /locus_tag="Ccel_1593" + CDS 1932363..1932602 + /locus_tag="Ccel_1593" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75945.1" + /translation="MAILEKLGSLLMSALTWVVQFLPDSPFQLINNSDVQSFMGTLNW + ILPIGQMVAELQLWISAVAVYYIYQIVLRWIRAID" + gene 1932690..1933364 + /locus_tag="Ccel_1594" + CDS 1932690..1933364 + /locus_tag="Ccel_1594" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ppd:Ppro_1760 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75946.1" + /translation="MIYLYCGTPRSGKSLHTIVDIVHKLRRGQDVIANFIVNDELIRK + KPFRTFMEKTGCKFKDNQFTYKLGKFTYKDNPELTVPFLVDYAKKNHKYGKEGQTLLV + IDECSVQFNPRDFKRADRDAWVKFFQHHGKLGYNVILISQSDGLIDKQIRAFIEYKII + HRKVNNFKIGWIFSLFHVGLFIAVTQWYGVKEKCGSEFFRYRNFYSKIYDSYKMFDDS + MLNEFN" + gene complement(1933463..1934263) + /locus_tag="Ccel_1595" + CDS complement(1933463..1934263) + /locus_tag="Ccel_1595" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL75947.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(1934305..1934883) + /locus_tag="Ccel_1596" + CDS complement(1934305..1934883) + /locus_tag="Ccel_1596" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL75948.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene complement(1935982..1937397) + /locus_tag="Ccel_1597" + CDS complement(1935982..1937397) + /locus_tag="Ccel_1597" + /inference="protein motif:PFAM:PF02065" + /note="PFAM: glycoside hydrolase clan GH-D; cellulosome + protein dockerin type I; + KEGG: aba:Acid345_1677 alpha-galactosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase clan GH-D" + /protein_id="ACL75949.1" + /db_xref="InterPro:IPR000111" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR002241" + /translation="MKKIKRLIALVILTAVFISPFPPTVQNGNQVLALNNSLGLTPPM + GWNSWNIFGGDINEEKIKQITDAMVTTGMKDAGYEYVNIDDNWMANPARDANGILIPD + PKRFPNGMKALADYIHSKGLKFGIYGDRGVTTCCNIPQSGSQGYEEQDAKTFAQWGVD + YLKYDNCASDSNLQAGYEKMRDALLKTGRPIFYSICCWYFAGAWMVDCGNSWRTTGDI + SDNWRSIIKNIDENSKSAAYAGPGHWNDPDMLEVGNGNMTETEYKAHFSMWCMMAAPL + IAGNDLRNMTPATKDILTNKEVIAINQDAAGVQGTKVSTSGELEVWCKPLGTDGTTKA + VALLNRGAASADITVNWRDIKLADGPATVRDLWEHKDYGKFNTEYTANVPSHGVVVLK + VQASSTDTDIMYGDVDGSGMIDALDYSLVKRYLLDQISDFPASNGKLTADVDGDSQIT + ALDFSLIKQYLLGIVNKFPVQ" + gene 1937628..1938194 + /locus_tag="Ccel_1598" + CDS 1937628..1938194 + /locus_tag="Ccel_1598" + /inference="similar to AA sequence:KEGG:SYN_00482" + /note="KEGG: sat:SYN_00482 molybdopterin-guanine + dinucleotide biosynthesis protein A" + /codon_start=1 + /transl_table=11 + /product="molybdopterin-guanine dinucleotide biosynthesis + protein A" + /protein_id="ACL75950.1" + /translation="MTGVILAGGKNSRMGRKKAFINIEGNTIIDRILSIFKEVFLEVI + IVSNTPEDFSYTGLKVVTDIIPDKGSLGGLYTGLVNTKYDRSFVVACDMPYISKSLVK + YIIDIPKYDIVVPKIKGLYEPLFACYSRKCANLAKRQIEEGNLRITDIYPYFTVKEIY + EDEIRKFDSSMRSLVNINTPEDLSSSLL" + gene complement(1938227..1939063) + /locus_tag="Ccel_1599" + CDS complement(1938227..1939063) + /locus_tag="Ccel_1599" + /inference="protein motif:TFAM:TIGR01581" + /note="TIGRFAM: NifC-like ABC-type porter; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: cac:CAC0280 molybdate ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="NifC-like ABC-type porter" + /protein_id="ACL75951.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR006469" + /translation="MMHINSPPIYRKYKNNGIQLNREILYWGLFVLMVCFYFLVLIIP + TLAIFKEVGLKNFSEVLRNSENAQAIKLSISTATISTFFVFLLGTPVVFMLTFKSSLI + TKILDVMVNITVVMPPAVVGIGLLFAYGRNGIIGHLLAKYGIEIVFTPAAVVLAQFFV + SSAFYIQVLKASVNEINREFFEVSYLFGLGKVETFIRVIAPMLKKPMVTGLILSFNRA + LGEFGATIMFAGNVIDKTRVIPLQIYTLMQVDIYAAVALSLLLFISTFIMLLLIKIWL + RE" + gene complement(1939099..1939890) + /locus_tag="Ccel_1600" + CDS complement(1939099..1939890) + /locus_tag="Ccel_1600" + /inference="protein motif:TFAM:TIGR01256" + /note="TIGRFAM: molybdenum ABC transporter, periplasmic + molybdate-binding protein; + PFAM: extracellular solute-binding protein family 1; + KEGG: cac:CAC0281 molybdate-binding periplasmic protein" + /codon_start=1 + /transl_table=11 + /product="molybdenum ABC transporter, periplasmic + molybdate-binding protein" + /protein_id="ACL75952.1" + /db_xref="InterPro:IPR005950" + /db_xref="InterPro:IPR006059" + /translation="MKCRLLPLIVILAAFSLAGCTSKVETPKEIKVFAAASLTECFGE + LAKEFEQQEAGAVKVVLNFAGSQALVTSIENGANADIFAVASVNYMDNLKSKKIIKDY + KIFAKNSLVLIKNRKNNISISKFSDLAADGTKIAVGDSKIPVGMYWKKACEDALKKEN + ITEKLNIKIQQNVKSRELSVKDIVSKVLVNEVDIGVVYRTDITSANEGTIKEIAIPEL + SAINASYPIAILNGSELNDSVVKFYNFINSAIGKDILRKYRFIIE" + gene complement(1939919..1940404) + /locus_tag="Ccel_1601" + CDS complement(1939919..1940404) + /locus_tag="Ccel_1601" + /inference="protein motif:TFAM:TIGR00177" + /note="TIGRFAM: molybdenum cofactor synthesis domain + protein; + PFAM: molybdopterin binding domain; + KEGG: dau:Daud_1891 molybdenum cofactor synthesis + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="molybdenum cofactor synthesis domain protein" + /protein_id="ACL75953.1" + /db_xref="InterPro:IPR001453" + /db_xref="InterPro:IPR008284" + /translation="MLKIAVVTISDSASRGQRESTSDKVIAEMVKDIGFVDSQIIIPD + ELDTIVECLQKLADEKFMDIILTTGGTGISPKDVTPEATYKVIDREIIGIPEKMRIET + SKYSPNAILSRAVAGTRKNTLIVNLPGSPKAVEECLETILPVLVHTVDVIKGRVERCG + G" + gene complement(1940392..1940856) + /locus_tag="Ccel_1602" + CDS complement(1940392..1940856) + /locus_tag="Ccel_1602" + /inference="protein motif:PFAM:PF03473" + /note="PFAM: MOSC domain containing protein; + KEGG: tye:THEYE_A1201 MOSC domain protein" + /codon_start=1 + /transl_table=11 + /product="MOSC domain containing protein" + /protein_id="ACL75954.1" + /db_xref="InterPro:IPR005302" + /translation="MIGRVYSLNISKEKGTSKYPVTEIEAIENHGFKGDAHSGDHIRQ + VSFLSIENILKQNNINQDNKIDLALKPGDYAENITTQGIDLAKLKIGDDLLIGKSVEL + KISKIGKECHDKCEIFKKVGSCIMPKQGLFAIVEKSGNIKIGDEIRVRRCLK" + gene complement(1940973..1941458) + /locus_tag="Ccel_1603" + CDS complement(1940973..1941458) + /locus_tag="Ccel_1603" + /inference="protein motif:TFAM:TIGR00581" + /note="TIGRFAM: molybdenum cofactor biosynthesis protein + C; + PFAM: molybdopterin cofactor biosynthesis MoaC region; + KEGG: dsy:DSY3965 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="molybdenum cofactor biosynthesis protein C" + /protein_id="ACL75955.1" + /db_xref="InterPro:IPR002820" + /translation="MIEELSHLDTEGRAKMVDVSFKEPTCREASAQASLEMSEELLEL + VKLNKIAKGDIFSVSKCAGIMAAKQTSMLIPLCHQIPLDKVELDFQIENNRIVIKTFA + RAYSKTGVEMEALTAASIAALTIYDMCKAVDKSIIISEIKLLKKAGGKSGEFFRENLS + R" + gene complement(1941462..1942448) + /locus_tag="Ccel_1604" + CDS complement(1941462..1942448) + /locus_tag="Ccel_1604" + /inference="protein motif:TFAM:TIGR02666" + /note="KEGG: drm:Dred_2268 molybdenum cofactor + biosynthesis protein A; + TIGRFAM: molybdenum cofactor biosynthesis protein A; + PFAM: Radical SAM domain protein; molybdenum cofactor + synthesis domain protein; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="molybdenum cofactor biosynthesis protein A" + /protein_id="ACL75956.1" + /db_xref="InterPro:IPR000385" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR010505" + /db_xref="InterPro:IPR013483" + /translation="MKILIDKYGRKIDYLRISVTDRCNLRCIYCIPQFGVLQTREEDM + LSIKEIVSFVKVASSHGIKKIKITGGEPLLRKDIVSLVSCIKEIDSITDISMTTNGVL + LKKYASDLKKAGLKKLNISLDSLCSDKYKEITKIGKLKDVLTGIETAMELEFPQVKVN + TVIIRDINFDEILDFVRFSTETGITVKFIEYMPTKNSLDGYAKKFVSADEMRFLCSEA + YSLLPAVVDGNGPAKYYVIPGTNGTIGFISPLSCKFCSDCNRIRLTSDGRLLSCLYAQ + ECVDIKDSLRKGPDIDEVTKLLYRAIVSKPASHSLTVEDKQMDFCSMMRIGG" + gene complement(1942528..1943034) + /locus_tag="Ccel_1605" + CDS complement(1942528..1943034) + /locus_tag="Ccel_1605" + /inference="protein motif:TFAM:TIGR00176" + /note="TIGRFAM: molybdopterin-guanine dinucleotide + biosynthesis protein B; + PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB + region; + KEGG: nth:Nther_1267 molybdopterin-guanine dinucleotide + biosynthesis protein B" + /codon_start=1 + /transl_table=11 + /product="molybdopterin-guanine dinucleotide biosynthesis + protein B" + /protein_id="ACL75957.1" + /db_xref="InterPro:IPR004435" + /translation="MIPIVSIVGKSNSGKTTLIENLIPNLKKMGYKVGTIKHDAHKFD + IDHKGKDTWRMARAGANTVVITSMEKMAMIKYIDCEKNLDEITEWLFPDVDIVITEGY + KSMDKPKIEVIRFDNPITSTDNNLIALVNNFVDEESFQPPEGFSNIKLFRFKDIDKIT + DFIVQKFL" + gene complement(1943047..1944255) + /locus_tag="Ccel_1606" + CDS complement(1943047..1944255) + /locus_tag="Ccel_1606" + /inference="protein motif:TFAM:TIGR00177" + /note="TIGRFAM: molybdenum cofactor synthesis domain + protein; + PFAM: molybdopterin binding domain; MoeA domain protein + domain I and II; MoeA domain protein domain IV; + KEGG: sat:SYN_00272 molybdopterin biosynthesis MoeA + protein" + /codon_start=1 + /transl_table=11 + /product="molybdenum cofactor synthesis domain protein" + /protein_id="ACL75958.1" + /db_xref="InterPro:IPR001453" + /db_xref="InterPro:IPR005110" + /db_xref="InterPro:IPR005111" + /db_xref="InterPro:IPR008284" + /translation="MLGIEQARDLVLESVVKKDSEVVDITSSLNRILACDLYSDIDLP + TFNNSAMDGYAVISSELKGASFDQPISLEVIGEIPAGYTYSGILMNGKAIKIMTGAPI + PQGADAVVPIEYTKAEGALIKVFRGVKDKENIRYKGEDLAHGKLVLKKGKKLSPADIG + MLAAQNLRTISVSKLPSVSILATGDEVVDVGEELSPGKIRDINSYTLYANVIKYGGIP + ISLGIAKDNKDAIIRSIENGLNSDILVISGGVSVGDYDFVKEVLIEKGVSIKFWKVAI + KPGKPILFGVKGNTLVFGLPGNPISTLVTFREFVLPAMCKMQGRVDNPVREQYAVLER + DIAITPGRRHYFMGNICYRDGSYFTKPVGIQSSGALNSMLQSNCLIVVPEDTPQVKSG + EQVLVQLLDE" + gene complement(1944292..1945491) + /locus_tag="Ccel_1607" + CDS complement(1944292..1945491) + /locus_tag="Ccel_1607" + /inference="protein motif:PFAM:PF00766" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; Electron transfer flavoprotein + alpha/beta-subunit; Electron transfer flavoprotein alpha + subunit; + KEGG: cno:NT01CX_1204 electron transfer flavoprotein, + alpha subunit" + /codon_start=1 + /transl_table=11 + /product="Electron transfer flavoprotein alpha subunit" + /protein_id="ACL75959.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR014730" + /db_xref="InterPro:IPR014731" + /db_xref="InterPro:IPR017900" + /translation="MAELQILSDKCVKCLQCINVCPCNAIKNDKNVVYIDNTCTLCGI + CIPKCSFSAISYNENFTKSKFNIDEYNGILIFGEQRDGKVSSVVYELLGEGNRLARQL + GTKVSVVLLGNNTDKVVRELFAFGADDVFQIDHPLLECFNDELYTDIVVQVILQSKPE + IFLVGATTYGRSLAARVASRLNTGLTADCTCLEIDAEKRLLKQTRPAFSGNLMATIIC + PNHRPQMCTVRSKVMNPIEPDFSKIGQIIKPNVTISPNLKIKKIDSIKNKVQRVNLAD + ADIIVSAGRGIQKPQNLELIREFADCLGAAVGSSRALVDAGWIEYSHQIGQTGINVRP + KIYFACGISGAIQHLAGMMSAKYIIAINKDPNAPIFKVANLGMVGEIEHIIPALIKEV + KNKKANT" + gene complement(1945568..1946359) + /locus_tag="Ccel_1608" + CDS complement(1945568..1946359) + /locus_tag="Ccel_1608" + /inference="protein motif:PFAM:PF01012" + /note="PFAM: Electron transfer flavoprotein + alpha/beta-subunit; + KEGG: cno:NT01CX_1205 electron transfer flavoprotein + subunit beta" + /codon_start=1 + /transl_table=11 + /product="Electron transfer flavoprotein + alpha/beta-subunit" + /protein_id="ACL75960.1" + /db_xref="InterPro:IPR014730" + /translation="MDIIVCVKQVPETTNVKINKDTNTIIREGNNSIINPFDLYAVEE + AIRLREALGGNVTAISMGIPQAEELLREVIAIGVDNAVLLSDKAFAGADTLATSYTLA + AGIRKISSYDLIICGRQSTDGDTAQVGPSLAEKLEIPHVTCVSKIEEISKDCIKCYRL + IEDGYEVVEMRLPGLITVVKEINEPRLPSLFGLRKAMQAEIPIWTANDINIDNTLCGI + AGSPTYVVDTFSPNHEIENEILNGEPEEQAKIVIDKLMKIIYKKG" + gene complement(1946478..1946930) + /locus_tag="Ccel_1609" + CDS complement(1946478..1946930) + /locus_tag="Ccel_1609" + /inference="protein motif:PFAM:PF01047" + /note="PFAM: regulatory protein MarR; + KEGG: bca:BCE_A0172 transcriptional regulator, MarR family + protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MarR family" + /protein_id="ACL75961.1" + /db_xref="InterPro:IPR000835" + /translation="MIISNNEKELRELIRQIEAKLGILNEMKSSCCGVSFTQCHAITE + IGRACNISLNELAEKLNVDNSTMSRNVNNIVNKGLANRELDPNDRRYVTISLTENGKK + MFDEIELTMNNYFKKVYENIPQDKRAQAIESLELIADAITKSVCCNKG" + gene complement(1946981..1947790) + /locus_tag="Ccel_1610" + CDS complement(1946981..1947790) + /locus_tag="Ccel_1610" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: paa:Paes_1634 nitrogenase cofactor biosynthesis + protein NifB" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL75962.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013032" + /translation="MVKILHPCFDETESGCRIHLPIAKKCNTKCNYCKMAFSKCDIRP + GVTDKLLDVSDVVTYVNESIELYNDCKIIGIAGPGDPLANPDDIFSALEIVSENYPDF + KKCICTNGFGVEDCADKIKEAGIDYITLTINSINVNTLSKIYKYIYYRDEYYEGESAA + QLILRLQKSALDILSSIKGLKIKINIVFIPGINDKEIDELIQFLCKFKIDIINIIPLL + SVSGTEFGTIEPLTHSDFCEIKKDLENRYPKVKFKQSCQRCRSDARGRIHL" + gene complement(1947965..1948843) + /locus_tag="Ccel_1611" + CDS complement(1947965..1948843) + /locus_tag="Ccel_1611" + /inference="protein motif:TFAM:TIGR00674" + /note="TIGRFAM: dihydrodipicolinate synthase; + PFAM: dihydrodipicolinate synthetase; + KEGG: tye:THEYE_A0933 dihydrodipicolinate synthase" + /codon_start=1 + /transl_table=11 + /product="dihydrodipicolinate synthase" + /protein_id="ACL75963.1" + /db_xref="InterPro:IPR002220" + /db_xref="InterPro:IPR005263" + /translation="MRLEGVYVAVVTPFDNGKIAEKIYEEYLENLISSGIAGIVVCGS + TGESSMLTMEEHIHLFKLSKEIVNKRIQVIANSGANSTHEAIYLTKEAEKIGVDASLS + VVPYYVKPTQEGLFLHFKAIHDETKNIPLIIYNVPGRTVVDISVETVVRLSALERYIG + IKEASSDMEKVSIMVSQTKPNFSVLSGNDSTFLPLLSVGGKGVISVIGNIMPKELVAL + YDSVEKGDLKTAIDLNTKMLPLYQALSLESNPIPVNYALYKMGQIPNELKLPLTPLSE + PNQKKMEQVLKDLSII" + gene complement(1948857..1950074) + /locus_tag="Ccel_1612" + CDS complement(1948857..1950074) + /locus_tag="Ccel_1612" + /inference="protein motif:PFAM:PF00202" + /note="PFAM: aminotransferase class-III; + KEGG: reu:Reut_A2723 bifunctional + N-succinyldiaminopimelate-aminotransferase/acetylornithine + transaminase protein" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class-III" + /protein_id="ACL75964.1" + /db_xref="InterPro:IPR000923" + /db_xref="InterPro:IPR005814" + /translation="MSSDCYINSTELIKKAEKSLMYVTNRPDVVFIKGKGSYLWDSNS + NKYLDMIAGWAVCCLGHSPEIMVDALTRQANLLINPSPSFYNEPAIEFANLLTKISCM + DKVFFINSGAEANEGAIKLARKYGQKYMNGAFEIITAWNSFHGRTLATMAASGKKIWE + NLYQPRPQGFAKVEYNDIESLKQAISKDTCAIMLELVQGEGGVIAADKTYIKQVRQLC + DENNILLIIDEVQTGLGRLGHMFAYEEYGIEPDIMTLAKGIGGGFPLSALLAKDKVCC + FEAGDQGGTYSMTPLGAAVGKAVVEEIINSDLCNNAKKMGEYFTEQLCKLMDEHKVIK + EIRGSGLLIAIGLHEEIANQIKDECMNNFLIINAPNTKTLRFMPALNISTVEVDEAIS + ILNNVLNKVSTIS" + gene complement(1950229..1950423) + /locus_tag="Ccel_1613" + CDS complement(1950229..1950423) + /locus_tag="Ccel_1613" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75965.1" + /translation="MAVLEIVAANSLVTKGQQRMMQKKAREKLAAKSSFIIRSNQSNL + LLNNCFSVDYWIFNINMEYK" + gene complement(1950535..1951812) + /locus_tag="Ccel_1614" + CDS complement(1950535..1951812) + /locus_tag="Ccel_1614" + /inference="protein motif:PFAM:PF00148" + /note="PFAM: oxidoreductase/nitrogenase component 1; + KEGG: ckl:CKL_1743 VnfN" + /codon_start=1 + /transl_table=11 + /product="oxidoreductase/nitrogenase component 1" + /protein_id="ACL75966.1" + /db_xref="InterPro:IPR000318" + /db_xref="InterPro:IPR000510" + /translation="MRNTYLCIDSIEKCGILGVSHVIAQISNSSVVIHGPKGCVYPAY + EASINYPLNINYTEMCEKSTVFGGEHDVSEKIVDEFYENRPDLMAVVTTCSSEIIGDD + IEGLIKLANLPIPVIRVDGGGFLNTQTSGTNTAMKALIEKLCVNIDNSYPIVNLISPI + CISSSWQEDMKYLSSLLNEFGIKARPLFCNATVEDIRDYGRACLNVVICSSIGLDTAE + YMSKKYGIPYLYLPYPVGLEKTDFFIKSILQILQNKNDISALLDEKKATIKRQFNNGM + GKVNTFRLFEYIKQLKKMIVGPPEIALAFLNIIANEFEDKIDIVIVKDISVEGADETI + AKFKEVSPSTKVIISDDNQEIKESIQSLKPQVLLGSDTEFYFAKESYEPAYINICYPG + AREIRFNRHPVVGYEGTLNFFEEWYNKIINRYY" + gene complement(1951817..1953163) + /locus_tag="Ccel_1615" + CDS complement(1951817..1953163) + /locus_tag="Ccel_1615" + /inference="protein motif:PFAM:PF00148" + /note="PFAM: oxidoreductase/nitrogenase component 1; + KEGG: mac:MA1631 nitrogenase associated protein E" + /codon_start=1 + /transl_table=11 + /product="oxidoreductase/nitrogenase component 1" + /protein_id="ACL75967.1" + /db_xref="InterPro:IPR000510" + /translation="MSREIESKMAMLSMLVREVKADNLNIRDCIDMHQFCAFWGAFDI + LNYFNDVVILVHGPSGCLGNRRFLPAMGHLGECDNKPHLSTSFTNREVVFGGEKKLVD + SLNEVNSRYNPKIIAVLTNCCADIIGDDVEGCIEGLPDEIREKVIYLNSGGYSGKSYR + RGTEMAFKLLAKHLQTNQHTIDITNQEKSVNLFLRRWIWDQTKQEEINEIKRMFQMIG + VRLNKIFNQGLSFEDFYEMQNAQLNVALCLFFGMGLFSELNNNFGIPYSKVTAPMGLF + ATKKWLHEISNILELDVNIEELDEVKELEAQRRLLVNEIGKGRKCIIWTQTGERMLAL + VKLAYELEMEPIVVGVEPSIIRDKLPIFEKEILEDGLDVKIFVSKYIEDVNELIEYLG + NPVIFCNNNYFPDQTVFKYRFAQNPVYGFNGTRKIYQEMFNALKKKSNKYSLFVEG" + gene complement(1953174..1954004) + /locus_tag="Ccel_1616" + CDS complement(1953174..1954004) + /locus_tag="Ccel_1616" + /inference="protein motif:PFAM:PF00142" + /note="PFAM: NifH/frxC-family protein; + KEGG: csc:Csac_2466 nitrogenase iron protein" + /codon_start=1 + /transl_table=11 + /product="NifH/frxC-family protein" + /protein_id="ACL75968.1" + /db_xref="InterPro:IPR000392" + /db_xref="InterPro:IPR006140" + /translation="MKSIKQIAIYGKGGIGKSTTCSNISAALGLMGYKVLQIGCDPKA + DSTKNLVGGNKMPNILDYVKENSKNISIDNIVTKGFANTYCIEAGGPEPGIGCAGRGI + ISAIEIIEQLNLIKELDIEVVVYDVLGDVVCGGFAVPLRMGFAKDVYLVTSGEVMALY + AANNISKAINRFAQRSDVRLGGIICNQRNAYLEKEIVNILSSKLGTHIIGWIPRDNIV + QECELAEKTVVEGSPESNQAQVYKELAKSIIENNNYVIPTPLSDEEFDKMVKEPLIKR + " + gene complement(1954036..1954602) + /locus_tag="Ccel_1617" + CDS complement(1954036..1954602) + /locus_tag="Ccel_1617" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: ton:TON_1418 ribosomal protein-alanine + acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL75969.1" + /db_xref="InterPro:IPR000182" + /translation="MVIKQLSDCDYKAKLREFIEDLFSTWKQESSFSKENICCPQRPI + NEIMGKVDKVDGNMSEFIVAFDEETGSIFGMLHITFDSNKSAHISLVNVSPKYRRIKV + GFSLLSYSMVLSVKKGIDYIMLETWNGNNRAISLFEKFGFVKTSANENTIELKTNLPS + ILKEAYPNTDTLDYSILNNDVLKSISVF" + gene complement(1954778..1955830) + /locus_tag="Ccel_1618" + CDS complement(1954778..1955830) + /locus_tag="Ccel_1618" + /inference="protein motif:TFAM:TIGR01361" + /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate + aldolase; + PFAM: Chorismate mutase; DAHP synthetase I/KDSA; + KEGG: lin:lin1641 bifunctional + 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase" + /codon_start=1 + /transl_table=11 + /product="phospho-2-dehydro-3-deoxyheptonate aldolase" + /protein_id="ACL75970.1" + /db_xref="InterPro:IPR002701" + /db_xref="InterPro:IPR006218" + /db_xref="InterPro:IPR006268" + /translation="MSKSLKAIRQEIDNINDSILEMLNKRTELIKEITDLKDQNGSEY + FDPERETEMMKKVLSKNSGPLYNELIREVFSAIFSTSLKFMGISRQKKLLVSSSSNAC + FKSINEMFGLGNNEPVIIAGPCAVETPEYLETIAKHLRDKNIRFIRAGAYKPRSSPYD + FQGLKENGLKILQDVSKRYGLFSITEVVDTRDVNLVTQYVDILQIGARNMQNFELLKE + VGKTNHPVLLKRGISATIQELMLAAEYIALKGNNKIILCERGIRTYETKTRNTLDISS + IPIIKKETHLPIVADISHSLGRKDIVNNIAKAVLAAGADGIMVEVHPIPELALSDSKQ + QLNLSEFDDMLDFIKR" + gene complement(1955914..1956618) + /locus_tag="Ccel_1619" + CDS complement(1955914..1956618) + /locus_tag="Ccel_1619" + /inference="similar to AA sequence:KEGG:CHY_0557" + /note="KEGG: chy:CHY_0557 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL75971.1" + /translation="MSFGKCSICNSVILYKEDFFEAKCEFCGKEEESYIICSNNHYLC + KVCAAKEVMDKLYAILPSIDYKNPIDIAEKIISKCGFSGHTPHPITAAAFLTAVKNVT + NHITTEDVLEGISRAYDIPGGWCGYHGACGAAVALGTSFSVLLNATPSSDKERSIANR + VTSAGLLEVAELGGPYCCVASIRVVLEKGIELSKKYLGLEFPDKQIKYKKCWAATFQP + NCKKEKCRFYNMEIQK" + gene complement(1956700..1957347) + /locus_tag="Ccel_1620" + CDS complement(1956700..1957347) + /locus_tag="Ccel_1620" + /inference="similar to AA sequence:KEGG:MAE_56560" + /note="KEGG: mar:MAE_56560 bacilysin biosynthesis protein + BacA-like protein" + /codon_start=1 + /transl_table=11 + /product="bacilysin biosynthesis protein BacA-like + protein" + /protein_id="ACL75972.1" + /translation="MYKLQNDDLLCKKCIFQKEKLFGYIDKKNSVTMATLGPEGTTSS + ETAKVFKKYIEDINKLADLKINLYDSFELAINEVHKRSADFILLPNAYGKMTNFYWDT + TIELGFVFTNKTPEYGIAMLDKKNLYDKPTLTISTCKAVEHLLQELMDTTEFKNKSYE + IVEANSTTKSLMLLEDGKVDLALTNDTSLKNSKAYFISNTKYTDVLWSIFMLKTS" + gene complement(1957363..1957863) + /locus_tag="Ccel_1621" + CDS complement(1957363..1957863) + /locus_tag="Ccel_1621" + /inference="protein motif:TFAM:TIGR02087" + /note="TIGRFAM: 3-isopropylmalate dehydratase, small + subunit; + PFAM: aconitate hydratase domain protein; + KEGG: hhe:HH1135 3-isopropylmalate dehydratase" + /codon_start=1 + /transl_table=11 + /product="3-isopropylmalate dehydratase, small subunit" + /protein_id="ACL75973.1" + /db_xref="InterPro:IPR000573" + /db_xref="InterPro:IPR011827" + /translation="MKINGYVHKFDDNIDTDVIIPARYCVTLNKKELARHCMHDIKEE + FYKNVRDSDIIVAGENFGCGSSREVAPIAIQACGIKCIIAKSFARIFFRNAINIGLML + VIDHKLYDLVSTGDNIEVDFENKFILNKSNNINVDFNMSNSNIIDEIVKHKGLINYIK + DKKFNI" + gene complement(1957908..1959164) + /locus_tag="Ccel_1622" + CDS complement(1957908..1959164) + /locus_tag="Ccel_1622" + /inference="protein motif:TFAM:TIGR01343" + /note="TIGRFAM: homoaconitate hydratase family protein; + 3-isopropylmalate dehydratase; + PFAM: aconitate hydratase domain protein; + KEGG: tye:THEYE_A0867 3-isopropylmalate dehydratase, large + subunit" + /codon_start=1 + /transl_table=11 + /product="homoaconitate hydratase family protein" + /protein_id="ACL75974.1" + /db_xref="InterPro:IPR001030" + /db_xref="InterPro:IPR006251" + /db_xref="InterPro:IPR011826" + /translation="MKQTLVEKIFSNKIGKAVYANGTVFSPIDLAMGTDATIPITIET + FNEFGLENIVNPDKIVLVNDHFVPAKDIATAKFALMMKEFAKKQNIKNFFEIGRSGIC + HVLLPEKGFIKPYDIVVGVDSHTCTYGGLSAFSTGVGSTDMACVWATGKLWFRVPETT + KIIFSGELPKGVYAKDLALYLIGQLGINGANYDMLEFDGELIKNLDISSRLTLCNMVI + EMGAKAGIINADAVTQKYFREKNLKTEDIDFNSDNGARYKKIIEIDVSKIEPVIACPY + SPGNIKTAKELVDLKIDQVVIGSCTNGRIEDFRVAHKYLKDNEVHHEVKLIVIPGSQE + VLKQMEEESILIDFIKCGALISPPTCGPCMGGHMGVLANNEIGLFTTNRNFLGRNGDS + SAQVYLCNPAIAAYSATKGSIQIPEF" + gene complement(1959292..1959630) + /locus_tag="Ccel_1623" + CDS complement(1959292..1959630) + /locus_tag="Ccel_1623" + /inference="protein motif:PFAM:PF07883" + /note="PFAM: Cupin 2 conserved barrel domain protein; + KEGG: bte:BTH_II0571 pectin degradation protein KdgF" + /codon_start=1 + /transl_table=11 + /product="Cupin 2 conserved barrel domain protein" + /protein_id="ACL75975.1" + /db_xref="InterPro:IPR013096" + /translation="MSIDKWTKVNNELIGENADMFIISSENITVSKFEFRETIDLSTH + SHKNEQTTIVVEGEMTIKFGTIEKKMSAGDACIIPANVPHCAKISKVPFKSYDIFHPI + REDFTNKIGK" + gene complement(1959641..1960807) + /locus_tag="Ccel_1624" + CDS complement(1959641..1960807) + /locus_tag="Ccel_1624" + /inference="protein motif:PFAM:PF00682" + /note="PFAM: pyruvate carboxyltransferase; + KEGG: mth:MTH1630 trans-homoaconitate synthase" + /codon_start=1 + /transl_table=11 + /product="pyruvate carboxyltransferase" + /protein_id="ACL75976.1" + /db_xref="InterPro:IPR000891" + /db_xref="InterPro:IPR002034" + /translation="MDFYSLDEKEEIKNFKFFFCDTTLRDGEQVSGIRYTPEQKVEIA + QMLDKAGIESIDAGFAATSEEERLSIRKICDLGLKMRIMSMCRVIREDIDFASSCGVE + GVILFIPGSDIHLKAKFGEDIPAVRKNIVQKAMDAIKYAKDKGLFVEFGVEDSTRTDF + NVLLEILSQAEQEGADILGTTDTIGYLTPERTYNFIKKLVRNLKLPIGVHCHNDMGLA + TANTIAGLLAGGGYCSPTVNGMGERAGNASLEEVIMILKVLYNQDLKYDTKILGELSK + TVEKYSGISMDIFKPIVGQNAYSHESGIHVHGMLKDINTYELFDPQLVGHSRKYEMGK + HAGKHTIQHILKTNGFELSEEEVEDFWRHMKSNEKAGVYYSVEDVITEYKKLRR" + gene complement(1960884..1962086) + /locus_tag="Ccel_1625" + CDS complement(1960884..1962086) + /locus_tag="Ccel_1625" + /inference="protein motif:PFAM:PF00441" + /note="PFAM: acyl-CoA dehydrogenase domain protein; + Acyl-CoA dehydrogenase type 2 domain; + KEGG: chy:CHY_1732 acyl-CoA dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="acyl-CoA dehydrogenase domain protein" + /protein_id="ACL75977.1" + /db_xref="InterPro:IPR006090" + /db_xref="InterPro:IPR006091" + /db_xref="InterPro:IPR006092" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR013107" + /translation="MEFSFSKELLQLKAMVSKFVDKDLAPFAAEYDKKENPKDCIPWS + IIEKAMGLGLGSAAVPKEFGGSGLSSLEILTIIEELARGDAGFAYTLLSTITGAQLIT + KFGTDEQKNQWLTKIANDQTKRFLMGFALSEPQTGSDNMSPNPNAGMLTTAELTDGQY + IINGTKSFITNAGIAGLYLVWARTDKSKGAPQGGLSVFLVPADAPGLKVGKIEDKMGN + RLSQQGELIFENCIIPASNLLGKEGMGLPVCLAMIENRFSTVGAIGTGIAQAAFNISY + KYAKERVQGGAPIINQQAISHKLANILIAIESSRLLYQKAAWHLDNMIPGMVIGSMSK + VAGSEAAIMASNETIQILGCYGYSREYPAEKLLRDSKALSICESANEVQRSNIIMMLQ + MMEQKPQG" + gene complement(1962132..1963691) + /locus_tag="Ccel_1626" + CDS complement(1962132..1963691) + /locus_tag="Ccel_1626" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: vpa:VP2425 putative long-chain-fatty-acid-CoA + ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL75978.1" + /db_xref="InterPro:IPR000873" + /translation="MLKNDIKSFYQLFNYIKDNNDNYINYLSWSGKKYKYFRKTFSEI + HDDIQACYNNLKQAGITENSVIYIDIDNSYEFLICDFAIILTGALSIVSNNTEPLDKV + KDRVRQFKAEYIISKRELIDSLVDVNVIDISSLFQIGNNSIVTQTLYNNKDFSVVFSS + GTSGFPKALGITEQGSIGSSKHFFNYMGFCSSDKFMIYLPLANYQQRFFFWGCLITSV + NIALGDDKSLFHALKEFNPTILLAPPNFYYNLFCSDNNNGFFKKIFKNINNKFICKHI + THKPIYEALGKKMHYLLTGMAPIDLKVLEHFSDIKLEIYQIYGQTEIGMIACNNKKLN + KIGTVGRPIIKLYLSDDNEIVTESVFPIVSCYYREDNTKDFLGMVRPTGDVGSIDNDG + FLSINGRKNETIILNNGIKINPIMIENKIKSSLQIADMVIFKTRQESNNFALNIVLLI + DGFSNLNSEAIKQNINSVQEIKSNTNIVNIYKYDLKIEEKKVFYTENGKFSRVRAIDF + FKENFEKLVKI" + gene complement(1963737..1963988) + /locus_tag="Ccel_1627" + CDS complement(1963737..1963988) + /locus_tag="Ccel_1627" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75979.1" + /translation="MIFKINYEKVIINTLKEIASDKNINKDTIILKDIYIDSMGWLQF + LIKLEKKLKCTFEPDFLAKGKYETVEDLINGIKNYVNSK" + gene complement(1964015..1964992) + /locus_tag="Ccel_1628" + CDS complement(1964015..1964992) + /locus_tag="Ccel_1628" + /inference="protein motif:COG:COG0332" + /note="KEGG: cac:CA_P0134 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="3-oxoacyl-(acyl-carrier-protein)-like protein" + /protein_id="ACL75980.1" + /translation="MEIDTYIKYIDYYLPENFITVDDVFSSLDNEIFERKNISKDTFC + SKLKKETKLNKISIFKKEDDLASIVFSMIEKLLKETKINPQEIDYLVCGNEVLLKHNN + TSIIHYIQKAFNFNKSTIVPLLQPCAAALFAMGLSRSLLNREKKNMLILSACKWESAE + DRFIDFTVRGDGIGLLLVGSDTGFLRIADWNSCNLGNPSYNKIENKAQSQDFRSDMIN + RGVSFFNETLSKFKLEKDDIGKVIPPNVRHDVYFDVYSHYLKMDPKVFYLDNVPNGGH + ICDIDIVRNLKDYINSKKKAKNQNIVLYTPDVEKSFDVNYHLVLLKNAT" + gene complement(1965193..1966155) + /locus_tag="Ccel_1629" + CDS complement(1965193..1966155) + /locus_tag="Ccel_1629" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpr:CPR_1477 PP-loop family protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75981.1" + /translation="MFQQKYEKFLKTVNDYDLIPKGIDKVAIAMSGGKDAQVLAALLL + EYKQQERPDLELEIVTVASPSWKYKPDEYFASDESKKDYIVEQKKAVDETKKYWEKKG + IPCTYVNTVPGITEDMIMNASKPCVWCFFGLYRALCKYLEDEHKKGKNITLAAGLTKF + DLLYVLESLIIRSGGKTWEHDKEHNPQKYYFNRMQLSWFSPYPKLKIGIPNTEINKIT + PIINLTDNETRELANSLGLPRIPDPCHKLFGERFESDKRHFDRYLAGTTTEDVNLDHV + NSGFFSEYQSLLDTFTRVGVLPPVEEIDNILYDGLYNKSLTSVF" + gene complement(1966215..1966438) + /locus_tag="Ccel_1630" + /pseudo + gene complement(1966688..1967371) + /locus_tag="Ccel_1631" + CDS complement(1966688..1967371) + /locus_tag="Ccel_1631" + /inference="protein motif:TFAM:TIGR01726" + /note="TIGRFAM: polar amino acid ABC transporter, inner + membrane subunit; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: dde:Dde_1431 amino acid ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="polar amino acid ABC transporter, inner membrane + subunit" + /protein_id="ACL75982.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR010065" + /translation="MLADIPNLIKMFLIGPFPQGPLGGLAINVFLAVITMASGFILGL + FLALGRISKNIVIRRIVTCVIEITRALPLLLIVFWFYFFIPLLAGRPLPILLSAYLSL + TFYSAVNQAEIFRGGLTSIDKGQWQVASCTGLSHYQCMTYIILPQVLRMMLPSFVGFL + ISLFKDTSVIYIIGIIDLTQIGIMLSQREPDKLIFSYILVAMLYFILCFILSHFAKKW + ESKQARWSK" + gene complement(1967361..1968107) + /locus_tag="Ccel_1632" + CDS complement(1967361..1968107) + /locus_tag="Ccel_1632" + /inference="protein motif:TFAM:TIGR01726" + /note="TIGRFAM: polar amino acid ABC transporter, inner + membrane subunit; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: dde:Dde_1430 amino acid ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="polar amino acid ABC transporter, inner membrane + subunit" + /protein_id="ACL75983.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR010065" + /translation="MGSIINYEFDWQKILSGQYLEWILQGIQISLSLMLLSSLFAVVL + GVLLTFGQLSKYRVIRFISFLYIELCRNIPTLIWLLFFYYVFPELFSEPIKTMLNNNQ + ALNFWAAIAGLSISSSGYISEIIRGGISGVSKEQVSAARTLGHSQWEIWIYIIWPQAI + RICFPPLVSRLIHNMKNSSLALALSVHEIVWATQQIESITFRGIEATIIATLFFLCIN + YVFSRLGLSVEKRFLTDKNFKKIKKVKDVG" + gene complement(1968110..1969612) + /locus_tag="Ccel_1633" + CDS complement(1968110..1969612) + /locus_tag="Ccel_1633" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: extracellular solute-binding protein family + 3; ABC transporter related; + SMART: AAA ATPase; + KEGG: tth:TTC0795 amino acid ABC transporter, ATP-binding + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75984.1" + /db_xref="InterPro:IPR001638" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MDKNNPIIKINNVSKWYNDLQVLKDINLEIYNGEVLVILGPSGS + GKSTLLRTINGLENIQSGEVFINNEIYNCRNCKALSRKKRAEVGMVFQQFNLYPHMTT + LENVTLALRMVKKKTKEEALEIAIPILHKVGLDHKSHSYPSQLSGGEQQRVAIARSLA + MQPKVMLFDEPTSALDLELINEVLDTIIGLSMDGMTMVIVTHELGFARRVASRVAFLD + KGEIIEIDKPHDIIIRPKKERTKMFMKKIFSQKSSLNSVKRANTINIGVVDNSPPMCF + SEDGNKLVGFDVDLAKSIAKRLNVSLNLQPLKNKERIEYILTNKIDACIAKLNHTKAR + DNLIDFSVSYLQDCKKILMYKENIGPISELAGKDIAYTIDTSTAMEIENFFEEHNWVK + PNFIAYCSDEQAYNAMKHKLVAGYASDEIIINHFINGEAERGNFQYHPEVCCYSYFCV + GVSENDSEWLNEINNILLEIYDSGEYEEIFYKWFKSQDKKFLKPFERWSN" + gene complement(1969605..1972868) + /locus_tag="Ccel_1634" + CDS complement(1969605..1972868) + /locus_tag="Ccel_1634" + /inference="protein motif:PFAM:PF00384" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; molybdopterin oxidoreductase; molydopterin + dinucleotide-binding region; molybdopterin oxidoreductase + Fe4S4 region; + KEGG: dsy:DSY4615 putative anaerobic dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="molybdopterin oxidoreductase" + /protein_id="ACL75985.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR006656" + /db_xref="InterPro:IPR006657" + /db_xref="InterPro:IPR006963" + /translation="MKNSVVKYGMIIDLDKCIGCYSCQVSCRKEHAIPRGADRLKVHI + QDAGTYPALMRLFLPGLCNHCEKPTCTEYCSSNALYYTDEGIITYDAEDCNHCLSCME + ACVTGAIRYQKEVGLLSKCDFCFERLQQGLQPACVLSCMAKALYFGELNHRESKLMHI + LEANKNYLYVQKTLAPNLPKVFFLQRGNNRYESLTKADFSLYNLQFADSIDLHLKQDK + QNSNIKCINTVDLMCPAECNISVFVEDGVARKIYGNPQSLNNQGTICAKGAAGLELVY + SPLRIKTPLVRTGERGNEKWQEISWESALKQIAEKLLAIKKKYGEESVILDCGDLTDV + EPYMMLFHAFGTPHTYTHSAICDTNRRWGSKLLMGDERPLPDIQRPLLINNHDNTLYY + RSEHDIKLLINVGANPLVATRFNYMSRGIPAAQLTNQMYYVVIDPAFTNSAAKANLWL + PIVPGTDAELLACLLCYILTHDEPGNKHTSFIDHHFIENYTEGWEDFKRDFLAQAEQK + DETNGLLFFSPEWGADKTGIAQDEIKRLAHLMGITKPAAIEIGMHGGAHHLTGDLTST + LANVLCAITGNIDVPGGMVFTGSIKPVLNLISRKINGNRKITRAVAGEVRQGTYQQLH + KDLYGDYPFAWKGVLSTIPRNIIEGVTLKRGPFKGHTYPIKAFINRTGNPVYTGGNTD + EWIKALTAVQGGEYLLDMIVHIDTHINETGKYADFILPECSYLEKMGLSDQYTINPEI + ALRERVIVPQHESKTPFWIMQKLAGALVAAGDKDINESSFTCYRSEEDLLNIQLQGCP + GLRNIGQPLPYPQYPEGALIEGTPGNPNVYFNGKLIQQGEVLTVDWLRKNGGLAAWPA + SYYRYRRNKEAKPSGYLPMTNSGKFEFSFHYMTGLKEKMDCFYPASFLWKENNSQFTE + SLQQEYPFHLITGRTHQTGTMSQVCVSLSDLETEANKKMNDTFTIPSHTQNTKKDEFE + SNTMAIPVFLINENDGKNLGIYTGDMIRLKNSNGKYLTGKAFLSSGIKSRVIKTTFGS + GGRKATGMGIFSGAVSFTPNINKLYDSNAINQFTGMPAFGDIMVKIEKVAKERKNDG" + gene complement(1973026..1973898) + /locus_tag="Ccel_1635" + CDS complement(1973026..1973898) + /locus_tag="Ccel_1635" + /inference="protein motif:PFAM:PF00497" + /note="PFAM: extracellular solute-binding protein family + 3; + KEGG: dde:Dde_2764 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 3" + /protein_id="ACL75986.1" + /db_xref="InterPro:IPR001638" + /translation="MKKSIVCFIFLVIISVLLTACGTEKQESILDKVLERGVVNIGSG + NNVPPMNYIDENGNWTGFDIELSDAIAERLGVKLERVVVNNKTRISFLANGTVDMVVS + NLSHTRSRDEQIDYVEPPYLWTGKIAYAKKGKFKNLTDLAGKKIAVDQGSNAYIAIQQ + EIEKVNGAKPDIQTFQSNAECFLALKQGKVDAFTQDSVIIAGVAGKEGVEYEPIGGIY + SPGLYGIGVPPNDSKWKDKISFILQDLMRDGTYDKIYDKWFGTNGKFPLQPSAKPVLP + KESFGEDQLYVWPD" + gene complement(1974038..1974295) + /locus_tag="Ccel_1636" + CDS complement(1974038..1974295) + /locus_tag="Ccel_1636" + /inference="similar to AA sequence:KEGG:Cthe_1362" + /note="KEGG: cth:Cthe_1362 NusG antitermination factor" + /codon_start=1 + /transl_table=11 + /product="NusG antitermination factor" + /protein_id="ACL75987.1" + /translation="MNNWFVFRVQIGEEYKACEFLNKLYDKEESVEFVPQVEVVTKNS + QSIRKELTPTFPGYVFTGSILKEKTFVDLAYLYARFSKCVF" + gene complement(1974722..1975573) + /locus_tag="Ccel_1637" + CDS complement(1974722..1975573) + /locus_tag="Ccel_1637" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0351 PpiC-type peptidyl-prolyl + cis-trans isomerase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL75988.1" + /translation="MQSVDKLSVKRNRIIIISLILLTVLATLATAFIISKKTGKASDY + VFGEQALKINGKMVETSIFLDEKNIFFDRNKGNSALMQKTDEEINDLILEEVIKKVLA + DNYFYNESGYKVTQKEIDDYYNKYVKPSLEGSGGEGSSISEGLDYKSEAEYKKDVELY + LLKLKSVPSIAKEYGISLDENDFNNKYDEYTKKYKDMPKSIHPKDEYKKMLLVREFSI + SDKLNTWLEKLRSKAEIEIIEPSLKAYRLYKNEEYSKAADEYQKAYKQYRLTFYQDKE + KECRSKE" + gene complement(1975716..1976354) + /locus_tag="Ccel_1638" + CDS complement(1975716..1976354) + /locus_tag="Ccel_1638" + /inference="protein motif:TFAM:TIGR02365" + /note="TIGRFAM: dihydroxyacetone kinase, L subunit; + PFAM: Dak phosphatase; + KEGG: oan:Oant_4070 dihydroxyacetone kinase, L subunit" + /codon_start=1 + /transl_table=11 + /product="dihydroxyacetone kinase, L subunit" + /protein_id="ACL75989.1" + /db_xref="InterPro:IPR004007" + /db_xref="InterPro:IPR012737" + /translation="MSSFKNTLASSVVYNVINTIIDNWTYLSEVDGLIGDGDHGVNMN + KGFTMTKNKLEGKEISLSEGFNILGKTLILEIGGSMGPLYGTFFIEFSKACKDVEDID + KEAFGATLEAALKGMQAFDKAKVGDKTLMDTLVPAIEGYKAALAEGKDFKAALEDMKS + EAEKGKESTRDMVAKIGRAARLGERSRGVLDAGATSCNLILKSMADAIIELL" + gene complement(1976388..1977389) + /locus_tag="Ccel_1639" + CDS complement(1976388..1977389) + /locus_tag="Ccel_1639" + /inference="protein motif:PFAM:PF02733" + /note="PFAM: Dak kinase; + KEGG: smd:Smed_3823 glycerone kinase" + /codon_start=1 + /transl_table=11 + /product="Dak kinase" + /protein_id="ACL75990.1" + /db_xref="InterPro:IPR004006" + /translation="MQRIINDPFNCVEDMLEGFLKTHSDIVVKTDNPRTIKYKNAPVP + GKVGIVTGGGSGHKPAFIGYCGKNMVDAVAVGEIFASPTAKAFLDAMREADSGNGVAC + LYGNYAGDNMNVKMATTFAEEEGITVKTVVANDDVASAPKSEKEKRRGVAGEILMWKV + GGAKAAKGGTLDEVIAAAQKAIDNTRSVGIGLTSCTIPAVGHSNFKIEPGTMEVGIGH + HGEPGISVSELKTADEMAQEMLDIILPDYPFVAGDEVVALVSGLGATPIMELYILYNK + VEEILAQKGIKVYRSYVGNYFTSLEMMGATLTLMKVDEELKELVDEEVNTVGMKQFK" + gene complement(1977420..1977878) + /locus_tag="Ccel_1640" + CDS complement(1977420..1977878) + /locus_tag="Ccel_1640" + /inference="protein motif:TFAM:TIGR00689" + /note="TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB + family; ribose 5-phosphate isomerase B; + PFAM: Ribose/galactose isomerase; + KEGG: msu:MS0383 RpiB protein" + /codon_start=1 + /transl_table=11 + /product="sugar-phosphate isomerase, RpiB/LacA/LacB + family" + /protein_id="ACL75991.1" + /db_xref="InterPro:IPR003500" + /db_xref="InterPro:IPR004785" + /translation="MSIAIGCDEAGFQFKEVIKNLLLEKGLDVEDFGVYNTDPVLYPD + IAVAVAKSISEGKHERGILICGTGIGMAIAANKVPGIRAAVCHDSFSTERSRKSNNAQ + IMALGARVIGIELAKLLVDLWLECEFGGGGSEAKVNKIMEYENEFLKSCR" + gene complement(1977912..1978679) + /locus_tag="Ccel_1641" + CDS complement(1977912..1978679) + /locus_tag="Ccel_1641" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + KEGG: pmr:PMI3007 short chain dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL75992.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /translation="MLEYCGADLNFSLQGKTAIITGGAAGIGLATAHFFKGKGVNCVL + ADLNPEADKIAHELGDNCIGVSGDITKAEYRQSVINAAVKRFGSVDILVNCAGIVALD + SAETLNDDMWDKTISINLTASFKMAQAVGKYMIDAGKKGSIVNMASQAGVIALDKHVA + YCASKGGIIAMTKVMAYEWGKYGIRVNAVSPTVVLTDLGKKAWEGPVGDAFKKEMPSE + RFAEPDEIAGAIAFLCSGAAGMITGHNLLIDGGYTIK" + gene complement(1978780..1979781) + /locus_tag="Ccel_1642" + CDS complement(1978780..1979781) + /locus_tag="Ccel_1642" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: periplasmic binding protein/LacI + transcriptional regulator; + KEGG: vei:Veis_2044 periplasmic binding protein/LacI + transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="periplasmic binding protein/LacI transcriptional + regulator" + /protein_id="ACL75993.1" + /db_xref="InterPro:IPR001761" + /translation="MKRMKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVT + ETSKPADKKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQV + ETMISDGVDAIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYA + GELEMQAIADKIGGKGNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWS + RSEAMTVMENWLQAFDKIDAVVAENDEMALGARKAIEAKKLDIPTIGVDGITDALDAV + EKGTLIATIFQDGAGQGSKALEIAVAKAKGENVDKEYWIDFEPVTKDNVAEFKQRAQ" + gene complement(1979837..1980799) + /locus_tag="Ccel_1643" + CDS complement(1979837..1980799) + /locus_tag="Ccel_1643" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: dac:Daci_4580 monosaccharide-transporting ATPase" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL75994.1" + /db_xref="InterPro:IPR001851" + /translation="MENIKNYRKMTAGQFLEKFATLIGLFLVILIFALLKPKFLDVNN + VFNLLRQASINGLLALGMTFVVLTGGIDLSVGSILGASGIFAALVAQNHDIPWFVAVF + VGLGVGFILGSLNGIVISWLKVPAFVATLGMLSVARGITYLASNAQPVPGLSEGFLKI + GGGNVGIIPIPVIILAVVFIICSVLIYKAKYGRYIFGVGGNAKAARLSGINVKKIKWS + AYMIAGVLAGLAGVVLTSRVSSGLAMAGQNYETDAIAAVVMGGTSLAGGKGRLWGTLV + GVLIIAVLNNGLDMMAVSSYWQLIIKGLIIIAAVMMDSLNSSND" + gene complement(1980816..1982300) + /locus_tag="Ccel_1644" + CDS complement(1980816..1982300) + /locus_tag="Ccel_1644" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: bha:BH2322 sugar ABC transporter ATP-binding + protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL75995.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSLLEMKDISKSFNGVNVLHNVHFKLEKGSVHALMGENGAGKST + LMKILAGVTKSDTGSISINGSNVEINSPTDSQNMGIAMIHQELSPIPGMTVAENIYLG + REPGKGGFVDYRMLYRQTGELLKSLHINNISPKEKLQNLQVADQQLVEIAKAISFNAE + IIIMDEPTSAITDKEVDNLFLIIDNLRKEGKGIIYISHKMDEVFRISDEITVLRDGVY + VDSWQAEDINNEILIKNMVGRELSDIYPKVHVPIGEKVLEVRNLTLKNKFSGINFDVR + KGEILGIAGLVGAGRTEVMQALFGLSPADEGEIIFEGKKLNPKEPVEAIKNGLAFVTE + DRKGEGLVPYMSVGNNITLASMKDFEKNFLIDMKSEDEVIHKQISSLRIRTQGKEQLV + SSLSGGNQQKVVLAKWLIKKPKLLILDEPTRGIDVGAKSEIYKIMCDFVAQGNSIIMI + SSEMPEVMGMADRIIVFSNRKLGGELKREDFVQENIMRLAVSKM" + gene complement(1982513..1984093) + /locus_tag="Ccel_1645" + CDS complement(1982513..1984093) + /locus_tag="Ccel_1645" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: cbe:Cbei_4431 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL75996.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MFKILVADDEDVIRKGIVVILKRELANIDICCIEAENGIEALKL + CKEHLPQLVITDIRMPFCDGLNLIKNIKETGYSPTFIILSGYADFEYAKSAIKLGVKE + YVLKPIKKHELVSMVEGYVKSLANEKQRIDEKFARESENKKVVENVKQKLLRSLLDST + DAEESNRCLTELYDLGIHFSEKLLLCAIIQYQVNNENKDYIDFAVKNIADEVLTQKMG + KDFLITVQYESGRLAAVFEGLKRETMFLSVKQELNKICNLVRKYLMVDVFAGIGDAVY + GSTLLHKTFNFANMATNYKLYRTGNSVQLFSEIPMSLRYEQIDWGNLIRPLKNINNAE + IINSFEKLIRLTPSLQSLSVIEQSYTKLVDSINRQLVKYNSTRTESIIKPLPFFELWS + FLQLKQEINRYLNQVCQAADEAGIDVPNKKLIVEVLQFVRENAASDINLNIVAEKFDR + TPAYMSALFKKGTGMGFNEYITSIRMAMAKKLLADTSIPIGEVSGLCGYINPKYFSVV + FKNTFGVSPVVYRQNSMH" + gene complement(1984068..1985921) + /locus_tag="Ccel_1646" + CDS complement(1984068..1985921) + /locus_tag="Ccel_1646" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: histidine kinase HAMP region domain protein; + histidine kinase internal region; + KEGG: csc:Csac_2551 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL75997.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MKTLINKLTRLSLVWQVTIVFSLIMIIPAIVITTSYFEIVRDNL + LEEANKKVQENLKKLDSNINSNISDMNSALNQLVFSQEFQYYLNPENNLSTHEKNYYV + YSVQNELLNIRYVYTNQFNRLVIYSSNNQIDEYFDWSYHMERLYDRDYYSEIMQSSSE + HIYGNVRVYDRSLGNLVNYEELENKEELVLPIYQKILDIRTKQCIGIIEVDMTMSKLA + DSSKLIDQDSEVKYLIFDRNQKLVFTSDDKSKGEFATIKFPQESGVSDIKIGDADYLI + AYYKDDITGLTSAAVMDKKKILASTSGVATLLLLIAILSIVFIILFTNVAARVFFRKL + KEIDRMITHIEAGQFDVRIKVGGFNEISRISESFNHMAERLQGLLVSMVQKEKAQKEA + EIHALQAQINPHFLYNTLENMRMQCEIDDYYVVADKLENLGDLLRYSLHWESPKVKIS + EELNNIEQYIEIMRMRFNKRLTHQIECPESLKNIMIPKLILQPLVENCFTHGFKDSLP + PWKIFVNVSIVENKLSITVEDNGVGIGNERLEEIYKCIAENKTIYNKNKSKNSIGILN + VSQRLKMICPAGSGMYIESEQNVGTKIILTIIIESGVQNGGEEDVQNIGGR" + gene complement(1986168..1987007) + /locus_tag="Ccel_1647" + CDS complement(1986168..1987007) + /locus_tag="Ccel_1647" + /inference="protein motif:PFAM:PF03741" + /note="PFAM: Integral membrane protein TerC; + KEGG: ckl:CKL_2793 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integral membrane protein TerC" + /protein_id="ACL75998.1" + /db_xref="InterPro:IPR005496" + /translation="MSTKKALKWVMFWIGLALIFNLGIYVFKGKEPALEFLGGFVIEK + SLSIDNLFLFIMVFSSFGIKLEYQRRVLNYGILGALILRLIFVLLGVTIVNMFHWVLY + VFGAILIISGVRMIFNNEDNNAVKDSKIIKILGKIIPVTDKVEGDKFFVRKNKILYAT + PLFAVLILIEFTDIIFAVDSIPAIFSVTTDPFIVYTSNIFAILGLRSMYFVLGNLHEK + FKYVKYGVALILVFTGVKLSVLMFDIKIPIELSVGIIFFVLASSIILSVLFSGRKKEI + KQG" + gene complement(1987312..1990161) + /locus_tag="Ccel_1648" + CDS complement(1987312..1990161) + /locus_tag="Ccel_1648" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; type 3a + cellulose-binding domain protein; cellulosome protein + dockerin type I; + KEGG: cth:Cthe_2760 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL75999.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR001956" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MSKVQKERKKRLSVLLIIAFIAGQIMSAFTVSAEAPPSSFTPAE + GWENFNYFNFAEALQKSLYFYDAEKCGEEAGYDKGGRLEWRGSCHEGDAKIPLKNTNL + SAAFIEKYKSILDPDGDGTVDVHGGFHDAGDHVRFGLPQSYTAGTLGWGFYEFRDSYK + AIGEEQHIIDILKYFTDTFLRCSYLDKDGNLIAFCYMVGEGDVDHCYWGPPELYPEEY + QKSRPADFATAETPGSDVCASTAAALCTSYLNFKDSDPQYAEECLKVAKALYEFAKKY + RGKAAGDGYYTSDYDEDELAWAAVWLYQCTGNMDYIKDIDSVDAQGNYTGYMKRIIPE + TYNTNTWYNSWTHCWDAVWGGTFLKLNELLPENELFNFIASWNVEYLSGGVAKHTDPN + DHNYYKTSPAGYTMINGWGSARYNTAAQLCALVYMKHHPERTDFGEWAKSQMEYIMGR + NPMGYSYIVGYGYEQGLPSARHPHHRAAHGSKTNSMNDPEEHRHILWGALSGGPDASD + YHIDSTTEYAYNEVAVDYNAAFVGACAGLFNYYGQGQEPIADFPPKEPRADDYYCEAR + VARETADSTQVVLRIHNESCQPPHYETGMKARYFFNIDELLKSGQGIDDVIFAVEYDE + QISMQQEPIKYTGPFKWDEAGTYYYEFDWSGSKIYGDRELQISFRAKQDSNYLTHWDS + SNDYSMKNLTSTYAVTKNVPVYLDGTLVYGEEAPKLDPSTEPENPDNTPPSISVSYKS + GTSDGTKNTIRSSINIKNTGTVPINLSDIKVKYWFTNDGNQQNSFTCEYAALGTGNVI + GNFSNISNPVPGADTYCEIGFTSEAGKLAPGGSTGAIPFRIEGASPYDQSNDYSYNSK + MAELGDNTKITGYIKGELKYGVEPVVISINLGDVDGSGTVDAIDFALMKKYLLGALEL + DSESCVRADVNKDESVNAIDLALLKKYLLGAISTF" + gene 1990443..1991276 + /locus_tag="Ccel_1649" + CDS 1990443..1991276 + /locus_tag="Ccel_1649" + /inference="protein motif:PFAM:PF01925" + /note="PFAM: protein of unknown function DUF81; + KEGG: tte:TTE0100 permease" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF81" + /protein_id="ACL76000.1" + /db_xref="InterPro:IPR002781" + /translation="MITTSIVILLISVLAGFLGSLLGLGGGIIITPALTLLLGIDIKY + AIGASIISVIATSSGSAVAYLKDRITNVRVAMFLEIATTIGALTGAFIAGLVSTKYLY + LIFGFLLLYSAINMFKKRKQELPRDISPSPLSQKLNLSGAYYDKALSETVEYNVTGVY + GGFGMMYVAGVISGLLGIGSGIFKVMAMDSFMKLPMKVSTATSNFMIGVTAAASAGIY + LSRGNIDPSIAAPVALGVLLGASVGTKVMQRLKSSTLRLVFIPVLLYVSIQMIVKGVK + L" + gene 1991273..1991629 + /locus_tag="Ccel_1650" + CDS 1991273..1991629 + /locus_tag="Ccel_1650" + /inference="protein motif:PFAM:PF07843" + /note="PFAM: protein of unknown function DUF1634; + KEGG: tte:TTE0099 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1634" + /protein_id="ACL76001.1" + /db_xref="InterPro:IPR012861" + /translation="MKSKIESSEIFISKILRIGVIASAIVIAAGLILLFITGKSGYPG + SSFPTSLGDILTGLVVLKPYAIILTGLLILIITPVFRVGVSIFTFLKEKDYMYVIITT + VVFVILIISFLLGKVE" + gene complement(1991778..1992878) + /locus_tag="Ccel_1651" + CDS complement(1991778..1992878) + /locus_tag="Ccel_1651" + /inference="protein motif:TFAM:TIGR02276" + /note="TIGRFAM: 40-residue YVTN family beta-propeller + repeat protein; + KEGG: pna:Pnap_4548 40-residue YVTN family beta-propeller + repeat protein" + /codon_start=1 + /transl_table=11 + /product="40-residue YVTN family beta-propeller repeat + protein" + /protein_id="ACL76002.1" + /db_xref="InterPro:IPR011964" + /translation="MKKRAISLFASMLLLTLTACSQKVLQEPPNNSGSQSIQSNLENA + LQTPTKNTTQSEINNMSQYYFYTANEDESSVSAVNVATMQTTASIPVGKGPHNVQVTP + DRNFVFVVENKSNTVSAIDTKTNKITKTIKVREGPKHIIFSKDSKTAYVTVTEMAETG + EMSGSDKKGNVYVVDIATGTVKNKIPVGKMPHGLRMSPDGKNLYVANSNSNDISVIDL + SSNKVIKTIKVGKKPAQVAVTPDNKQVFVTIGDENRVDVIDTSTMSVKKSIPVGKTPV + QDFVTPDGKFIYVANTGSDSISVIKTETLDVAATIAAGSKAHGVAISKDGKYVFVTNA + GSGNVTVVDAKSNVVIATVAVGKGPRGITVCD" + gene complement(1993020..1993556) + /locus_tag="Ccel_1652" + CDS complement(1993020..1993556) + /locus_tag="Ccel_1652" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; + KEGG: tte:TTE0880 cell wall-associated hydrolase + (invasion-associated proteins)" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL76003.1" + /db_xref="InterPro:IPR000064" + /translation="MSGRYSKLLTGCIFVLLLFFTSTDIMASNSLTEDMITNIDIRNT + PISESMDYESYVIRMVVDYAKEFVGVRYVYGGTSPKGFDCSGFIGYVYKNFGIELSRS + AQSMYSNGKKVSRDALKAGDILFFDASSRNRAGAIDHVGIYLGGDNFIHASSSKGSVR + IQKLSQYKALYIGAKRVI" + gene 1993745..1994698 + /locus_tag="Ccel_1653" + CDS 1993745..1994698 + /locus_tag="Ccel_1653" + /inference="similar to AA sequence:KEGG:Cbei_2773" + /note="KEGG: cbe:Cbei_2773 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76004.1" + /translation="MHTDKRLLKAYKNAKLQLFDNNSKYIFFSDSHRGDDSISDEFAR + NQNIFRHALNYYFENGYVYVEAGDGDELWEYKKFRHIRLAHSDVFIVLKKFFENNRLI + MLYGNHNIYLKNEDFVSKNFYSYYDDYSQDIHDLLKGMTPLESLVLKNKATGQEILVV + HGHQGDLLNDQLWFISMFLLRYFWRYIHVIGFHSPSSPARNHFKRHKIERNYKKWIQK + HKIMLICGHTHRQKFPKSKELPYFNTGCCIHSKGITGIEILEGKILMVDWRVRSDKNG + VLQVERYVMRGPVPIEEFDMNSNRDYEDCMNKDLKYDEEDC" + gene 1994805..1995797 + /locus_tag="Ccel_1654" + CDS 1994805..1995797 + /locus_tag="Ccel_1654" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; integrase domain + protein SAM domain protein; + KEGG: cth:Cthe_0728 site-specific tyrosine recombinase + XerC" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL76005.1" + /db_xref="InterPro:IPR002104" + /db_xref="InterPro:IPR004107" + /translation="MKNIFDFEMPLVLKDFLNYLQTIKGKSKNTIQVYFYDLRIFLRF + LKIHRNLVDKNIEFNSIDITDVDISLLKTVTLSDLYTYMSFVSNKRDNTSHARARKVA + SLKSFFNYLSTKAKLLDINPTIELESPKILKRLPRYLNFDESKKLLTSVNKADHEYAI + RDYAIITIFLNCGIRLSELVGINLHNIKDNTLIVFGKGGKERSIPLNRACLQAIDDYL + KVRPVNGLKDKSALFISRRNQRISKESVQKIVKRYITEAGLDPQRYSTHKLRHTAATL + MYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVDKHPLSDFGVVKQSK" + gene complement(1995887..1997194) + /locus_tag="Ccel_1655" + CDS complement(1995887..1997194) + /locus_tag="Ccel_1655" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: sus:Acid_0258 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL76006.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MFKKALLLTIVISNIVVGSMTTGTMAVTQMVKSMGEGTASAAAT + TTNDIKYGDVNMDNAVDSVDLALLKAYILAITSTLPNIAAADVTGDGTLDALDYAVLK + KYLLGLITILPADDNGNGKILIPHKSWTCGMADGIPKPETGVLVFETTMKLQNSYDLG + KTQYGLRKVFVVQNGSITATKIQGSVMSGGLDFQLTLSNGAMEIEQLLMIKTNDGNYI + YLRSAGTAVNQNDVRMVWDFEAPNSSSYNWLNSGKYVGRRIIDSVAGTMKISVYDVSG + INFTPDSTNSLIVTEPDDVPDQPWDYRKASYERNGSKFITEAVSLGASQSVGASKRGS + RNIIPITGGSVTGNLTAKILAAGADYQNLSNPITIDARYLWQTDDGEIIIVRNGGQFG + SLVPTFEVRADSKYSYLNQKLYLSSDPGGGAGGVTITFYESIK" + gene complement(1997345..2000200) + /locus_tag="Ccel_1656" + CDS complement(1997345..2000200) + /locus_tag="Ccel_1656" + /inference="protein motif:PFAM:PF03422" + /note="PFAM: cellulosome protein dockerin type I; + Carbohydrate binding family 6; + SMART: cellulose binding type IV; Parallel beta-helix + repeat; + KEGG: cth:Cthe_2195 carbohydrate-binding family 6 protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate binding family 6" + /protein_id="ACL76007.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR006584" + /db_xref="InterPro:IPR006626" + /translation="MQKNKVSKKFISLILSLVIVLCSIFTFTVSPMVVTAATQAAYYV + SPTGSDGNPGTIDAPFQTITKARDVVRTVNKNMTGDIYVYLRGGDYRLTSTINFGPED + SGTNGFRIFYQAYQDEIPVLNGATKVTGWTQHNGNIYKATLNRNTKLRYLFVNDKRAQ + MTKKTVKGQGGYGTYAVTKGQASWAWTSGSNSDGVKYNASDVPEITSNKDDLEIVNGT + TWNENIVCTRDVITSGSSRVLLLQQPYGAIAQLPGWGAAFTTTSTHTIYNAFEFLNSP + GQFYFNKTTKTLYYYPRPGEDMSTADVEAPVLEKLIDISGKSNTNRVKNITFQGITFA + NTDWNLIKVGDSYGRTTCQSADGFIAYYNGNWHDTKYTLLDTYPGMINVSSSDSINFT + GNIIKHSAADGITMVNDVINSNLVGNYIYDITSSGITVGHPQHVYLGDGGEHQKYAPG + VEGICTNVVINNNMLWDCSTAPGFGGCAGITAFFVNKLKVTYNTVHTTGYNGITLGWG + WCNFLDSNTCKDNVINNNRIYNALNRLHDSGAIYTIGQMPYTTINENYVKGIPDNSTG + PTYGLHNDEGSAFITENDNVLDISPGVTYTINCEDFGQKHDLTILRTYATVNKMGKNP + PKSTIDTPVAVPDNVWPLAQYNIALNAGVQEAYRSILPSNLFPVQDYVFPASCATKCG + ADLNIRSSGNAANTVWFAPAGTTKFVVGPTMTKAVGTATSIVTPETAGTYKLFVVNSS + GAKIGESDALLRVSGSASQIEAESFSSQSGVQTENCSEGGQDVGYIENGDYTVYNNFD + FKNGVTGFKARVASGASGGNIEIRLDSITGPLVGTCPVTSTGGWQTWADATCNVSGVS + GIHNLYLKFTGGSGYLFNINWFEFTGGGTTPVLTGDVNGDDSVDATDYAMMKKYLLGL + INDFPVEDDLKAGDINKDGVIDAIDLALLKKNLLSGT" + gene complement(2000664..2001107) + /locus_tag="Ccel_1657" + CDS complement(2000664..2001107) + /locus_tag="Ccel_1657" + /inference="similar to AA sequence:KEGG:DSY1199" + /note="KEGG: dsy:DSY1199 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76008.1" + /translation="MKNIKKLVAITLSVLVVGAAGMVYAADIKTPAEVVSALTGKSMT + DIYEEREEGKTYGTIANESGKLDEFKTKVLERKKAILDDKVKNGELTKEQADEIYNAI + KNNQAICDGTGTARMGRQNGMGFGQGLGGGKGQGMGRGAGCGIRY" + gene 2001283..2001975 + /locus_tag="Ccel_1658" + CDS 2001283..2001975 + /locus_tag="Ccel_1658" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: dsy:DSY1198 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76009.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNK + YSPLLLLLDVMMPKKDGFEVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVK + PFSPGEVMARIRAILRRVDISDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIE + ILWLLSNNPGKVFSRDNLLDSVWGYEYFGDARTVDTHIKRLRAKTDITDTSAWDIKTI + WGVGYKFEVKHV" + gene 2001968..2003752 + /locus_tag="Ccel_1659" + CDS 2001968..2003752 + /locus_tag="Ccel_1659" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: pth:PTH_2684 signal transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76010.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008358" + /translation="MFKKTLAFKLTLGFVVIVFISMLTIGVFFIQIFRQYTFDSKERA + MLEKAHNISDVIAENTLSNGQMHGFGGIMHFLDTMAEANVWITDSKGNPAVFSGMGMG + MGMRQRFSSEPIPDEAKNVIQEVLSGKDSVSESFSSVYKETTLTVGVPIFDTYQNVTG + SVFLHAPVTGITQTLNKAVSILSVSIIIALLLAIGLGLFYSLLFTRPLKAMNSTALEM + ANGNYSVRTGISSKDELGQLGNSLDLLASKLGYTIDQLFQEKGKMSDIISSISEGLVA + FNLKLEPLNNNNALSDIMNRTHPYKSELLTKDFESLEINLMITKVIKEKKSFQVTKNW + MNKKLRFTLSPIIDNKGNVTGCVVLVLDISESERLEQLRKDFVANVSHEFRTPLTVIK + GSIEALIDGTIDNKEDIERYYGRMLSETKSLQRLVGDLLELSRLQSGKISVNNELVHI + PSLLSDITKSMQTIAIMKEISIVYTPINDVPAVSGDYDRLRQLFVIFIDNAIKYSPQK + TEIHIRAAVKSTLEISIEDHGYGISEEELPYVWDRFYKTDKSREGGGTGLGLAIAKHL + IKLHKGSVIIKSSLGKGTTVTVSLPFAK" + gene 2003846..2004559 + /locus_tag="Ccel_1660" + CDS 2003846..2004559 + /locus_tag="Ccel_1660" + /inference="protein motif:PFAM:PF02683" + /note="PFAM: cytochrome c biogenesis protein transmembrane + region; + KEGG: cth:Cthe_1948 cytochrome c biogenesis protein, + transmembrane region" + /codon_start=1 + /transl_table=11 + /product="cytochrome c biogenesis protein transmembrane + region" + /protein_id="ACL76011.1" + /db_xref="InterPro:IPR003834" + /translation="MRKVILLSPIYYFLTFVEGILTFVSPCILPMLPIYFLYLAGESD + KEIKQSTTAKGRLLVNSIGFVIGFTVIFTLLGATATSLGYFLSNHRNLLEKISGLVMI + LFGLNFIGILKINFINMEKRINFQFKRLKFISSILFGMVFAFGWSPCLSSFLGSALAI + ASNSKTVFQGILLLFFFSIGLGIPFIITSIIFEKVKGAFKKIQAHSKTISIVSGALLI + VAGILVFTGSLKYFNYFGL" + gene 2004577..2005155 + /locus_tag="Ccel_1661" + CDS 2004577..2005155 + /locus_tag="Ccel_1661" + /inference="protein motif:PFAM:PF00578" + /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific + antioxidant/ Mal allergen; electron transport protein + SCO1/SenC; Redoxin domain protein; Thioredoxin domain; + KEGG: cth:Cthe_1947 redoxin" + /codon_start=1 + /transl_table=11 + /product="alkyl hydroperoxide reductase/ Thiol specific + antioxidant/ Mal allergen" + /protein_id="ACL76012.1" + /db_xref="InterPro:IPR000866" + /db_xref="InterPro:IPR003782" + /db_xref="InterPro:IPR006662" + /db_xref="InterPro:IPR013740" + /db_xref="InterPro:IPR013766" + /translation="MNKKVSIIIWTLAVFAIIAAAYIFYSKNRPQSFVTPPQETSSQS + QSSQSDKVMAPDFALKDMDGKTVKLSDYKGKVVILNFWAVWCKYCKLEMPDLNELDKE + LSQENNAVILAIDVEESHDTVKNYLTSNGFDLKVLLDNDGSVSRSYGVSGYPTTFIIN + KDGSVYTYIPYKTDKATLLQILDQLKAEEQLF" + gene complement(2005147..2006313) + /locus_tag="Ccel_1662" + CDS complement(2005147..2006313) + /locus_tag="Ccel_1662" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: cbe:Cbei_3888 major facilitator superfamily MFS_1" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL76013.1" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MTTLLLIIIYIAFISLGLPDSMLGAAWPTVRTDLSVPMAGAGLI + SMIISGGTIISSILSGKLIQKFGTGKLTLMSVFMTAMALLGFSFSQNYIWLCLVAIPL + GLGAGAVDAALNNFVALHFSARHMSWLHCFWGIGATAGPVIMSVAIIQNGSWQKGYLS + VAIIQICLVIILLFSLPLWRLFGENRQEDIAVENQNQHVFRLPGIPPALLSFFCYCAL + ETTAGLWGASYLVQTKGVSADVAAGWISMYYLGITLGRLVNGFITTKWSNPALIRGGQ + IIIGIGAILLLISNQTYVNLLGLILIGMGCAPIFPSMLHETPVRFGKNNSEKLMGVQM + AVAYMGTTLVPPAIGVLSGVVGIQFYPIFILVLLIVMLVSSEKINKIVTRRTLK" + gene complement(2006327..2007325) + /locus_tag="Ccel_1663" + CDS complement(2006327..2007325) + /locus_tag="Ccel_1663" + /inference="protein motif:PFAM:PF00480" + /note="PFAM: ROK family protein; + KEGG: bcl:ABC1130 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="ROK family protein" + /protein_id="ACL76014.1" + /db_xref="InterPro:IPR000600" + /translation="MALKNVNLIKQINLDKVRRVIKENKKATKPQLANLTGLSVVTIN + SLVELLLGNGEILVDELEVSSGGRPATIYSFNEEYSMALVIYTNEYEMKDLTHIAVVN + LYGEVIEVNKIALDEISEYSFDLTIDKMLKKYPNIKLIGIGMPGQEIRGKMENSDYIS + LEGKAFVEHLRKQFQIPVVFENDVNAAVLGYCISNQCEDKNVIGIYIPEKYPLGVGIF + INGNMYKGKDGFAGEAKFLPDEFDWNNPTFVSENISVALKKLILTFTCLLNPDILVIY + RENLTRLSIDPIIEDCKKILKSEVMPDVVVSNIFGEDFAEGIKQISLKPFEPKWQR" + gene 2007551..2007727 + /locus_tag="Ccel_1664" + CDS 2007551..2007727 + /locus_tag="Ccel_1664" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76015.1" + /translation="MQNDEKMEYKVARYDKARGCECECGCQEPVSVAVFPNAAQINPQ + DLKTINPKITVISN" + gene 2007797..2009113 + /locus_tag="Ccel_1665" + CDS 2007797..2009113 + /locus_tag="Ccel_1665" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: tye:THEYE_A0807 radical SAM domain protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76016.1" + /db_xref="InterPro:IPR007197" + /translation="MENLLLRREPFGGILAEQEGSKVRFLNHTGFEITYGIANGWSDN + DIIHHIKSKYDVSNSSLVENDIKNFRQMISKVKDWDTAESLWKDSSDNKEIASIPALS + APLDLSWEVTKRCNLNCHHCYNDSHAINYEPNLEQIHSVVNELSSTRLRNIVVTGGEP + LMREDLKTIIGWLRPLTFNLTLATNGTLINEQNIPWLGEMIDLVNLSLDAGNKFAYEK + FRGRKGTFDKCLRGLELLVRKKVPVVIQTTISRFNIDSLEELADLAIEKGATAWIARL + PVYSGRANQYKGDFLSRDEIVKKAPYLSEIRSRYKRKFAELQIGVNFVWSYGKPFNYV + QQQDRAISCAAGTVSTLLTAEGTLVPCSLFSSTDFRSNVVWDNNFLKEWEIAQCMQTM + RSLRLHQIRKCFHCEDYKVKCSSGCRAKSYLSGDLYSKDPDCGYLS" + gene 2009249..2010398 + /locus_tag="Ccel_1666" + /note="ribosomal slippage" + CDS join(2009249..2009572,2009574..2010398) + /locus_tag="Ccel_1666" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76017.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSVDADETEQLKQAHEAQIDELHRQIGQLTVERNWLKKKSEQFGLLTE + PPKHGGKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRVKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene complement(2010589..2010843) + /locus_tag="Ccel_1667" + CDS complement(2010589..2010843) + /locus_tag="Ccel_1667" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: sha:SH2597 IS605/IS200-like transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76018.1" + /db_xref="InterPro:IPR002686" + /translation="MDKNNLAHTTWECKYHLVFAAKYRRQIIYGKIKQDIGKMLRELC + ERKGIEIIEAECCKDHIHMLVRILPKYSVSEIMGYLKGKI" + gene complement(2011126..2011590) + /locus_tag="Ccel_1668" + CDS complement(2011126..2011590) + /locus_tag="Ccel_1668" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76019.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene complement(2011820..2012164) + /locus_tag="Ccel_1669" + CDS complement(2011820..2012164) + /locus_tag="Ccel_1669" + /inference="protein motif:PFAM:PF04324" + /note="PFAM: BFD domain protein [2Fe-2S]-binding domain + protein; + KEGG: cpr:CPR_0435 BFD-like iron-sulfur cluster-binding + protein" + /codon_start=1 + /transl_table=11 + /product="BFD domain protein (2Fe-2S)-binding domain + protein" + /protein_id="ACL76020.1" + /db_xref="InterPro:IPR007419" + /translation="MAKNRVICTKNNIDYLSIRKAMTSGARTIEELVELTGVCTECEG + CKSELNAILSSVCGCKKVSLETVVNAVKNGADTVEKVGEITGAGTGVDEETGEECGKC + KGLIQNIIDLGR" + gene complement(2012309..2014105) + /locus_tag="Ccel_1670" + CDS complement(2012309..2014105) + /locus_tag="Ccel_1670" + /inference="protein motif:PFAM:PF02836" + /note="PFAM: glycoside hydrolase family 2 immunoglobulin + domain protein beta-sandwich; glycoside hydrolase family 2 + TIM barrel; glycoside hydrolase family 2 sugar binding; + KEGG: cpe:CPE0147 beta-D-glucuronidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 2 TIM barrel" + /protein_id="ACL76021.1" + /db_xref="InterPro:IPR006101" + /db_xref="InterPro:IPR006102" + /db_xref="InterPro:IPR006103" + /db_xref="InterPro:IPR006104" + /translation="MLYPVLNSSRTLIDLSGIWSFKADDGTGFQQQWYANKLKNPMTM + AVPASYNDQKESIDLRDHYGYVFYQREIAIPKTLEGQRIVLRFGAVTHYAKVYLNGQL + ITEHKGGFLPFEVEIQDKVKSQNNLLTVAVNNVVDYSTLPVGSEVGGNMLGGVLPPVP + GVTPKKQNAPNFDFFNYAGIHRPVKIYSTPKKFIEDITIVPSLEGTKASVYYKIDTIG + QGETTLTIYDEEREVVAEAKGNEGTFIIENVHLWQPLNAYLYAAEITFGEDRYEQSFG + VRTVEVKDSQFLINGKPFYFKGFGKHEDFIAHGRGLDEVLNVKDLSLLRWIGANSFRT + SHYPYSEEMMNLCDREGFVVIDETPAVGVNVNFGAMSGGGKRDTFEVLHTHQHHHDVV + VDMIERDKNHPCIVMWSIANESDTTAFPESSYNYYKPLYDLAHKVDPQNRPVTIVGVQ + GEYKTDKTLPAMDVICLNRYYGWYIYGGDLNAAKQALSIELDYWKTIGKPIIFTEYGA + DTVAGLHLATPTMFTEEYQVEFLRANHEIFDKYDCFVGEHVWNFADFQTIQGIMRVEG + NKKGAFTRDRRPKLAAHYLQNRWTQIPDFEYK" + gene complement(2014138..2015154) + /locus_tag="Ccel_1671" + CDS complement(2014138..2015154) + /locus_tag="Ccel_1671" + /inference="protein motif:PFAM:PF00294" + /note="PFAM: PfkB domain protein; + KEGG: cpy:Cphy_0227 ribokinase-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="PfkB domain protein" + /protein_id="ACL76022.1" + /db_xref="InterPro:IPR011611" + /translation="MEKNFDIISFGEMMLRLSPPGKQRFSRSGSFEKQAGGSELNIAA + GVAALGLNTAIISRMPVHDVSQFIMNEIRALGVADDYIIYDKNPDTRLGIYYYESGAS + PRKPSIIYDRKGSAINRIKFDEIPPEAYGSTRLFHTSGITLALGEATRSAAQNMMKRF + KEAGAILSFDVNYRANLWSEDEARRTIEKVLPLLDILFISEETTRKMFRKTGELHDIM + KSYCSDYGIPVVATTERKVIGASQHSFSSTIYSSKDDRFYNEHAYEKIEVVDRIGSGD + AYVAGVLFGMLKYTDLQKALEFGNAMAAVKSTIPGDLIVTSFGEIERIIKAHQGEQQS + EMNR" + gene complement(2015208..2016170) + /locus_tag="Ccel_1672" + CDS complement(2015208..2016170) + /locus_tag="Ccel_1672" + /inference="protein motif:TFAM:TIGR01182" + /note="TIGRFAM: 2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase; + PFAM: KDPG and KHG aldolase; + KEGG: cpy:Cphy_0054 2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase" + /codon_start=1 + /transl_table=11 + /product="2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase" + /protein_id="ACL76023.1" + /db_xref="InterPro:IPR000887" + /translation="MDDILKRIGELGIVPVIKIEDVEKAVPLAQALYNGGLPCAEITF + RTKAAAEAIRRVRETLPGMLVGAGTILNKEQVDQSIEAGAAFIVSPGFNPKVVKYCKE + KGILIIPGCSNPSDVEQAIELDLKVVKFFPAEAAGGLKMIKSMAAPYAEMKFMPTGGL + TPQNMSDYLSFPNVVACGGSWMAKDELVEAGDFEQITLLTRNAIEIMLGFRLKHVGIT + AGNDQEAKKIADFLTNLFGFQQTDNNASIFVSEAIEVMKQPHFGTKGHIAVQTNSMER + AISYIKHKGYSFNHESAVSDPKGKIKSIYLKDEIFGFALHLVQK" + gene complement(2016188..2017039) + /locus_tag="Ccel_1673" + CDS complement(2016188..2017039) + /locus_tag="Ccel_1673" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + KEGG: cpe:CPE0149 D-mannonate oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL76024.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /translation="MKNPIDVDLSNKVAVVTGAGGVLCSMFAKAIARCGAKVVLLDRT + LEKAQKHAEEIVSDGYTAKAFQCNVLDKETLEQVRAKVNSELGTCDILINGAGGNKPL + ATTTNEYYFSGDFDKSDLVTFFNLDTKSVELVFNLNFIGTLIPTQVFAPDMLNKEDAS + IINISSMNAFTPLTKIPAYSGAKAAISNFTQWLAVHFSKTNIRVNAIAPGFFSTKQNA + SLLFNPDGTPTERTGKILNSTPMGRFGEPEELIGALLFLLYKPASSFVTGVVLPVDGG + FSSYSGV" + gene complement(2017063..2018109) + /locus_tag="Ccel_1674" + CDS complement(2017063..2018109) + /locus_tag="Ccel_1674" + /inference="protein motif:TFAM:TIGR00695" + /note="TIGRFAM: mannonate dehydratase; + PFAM: Mannonate dehydratase; Xylose isomerase domain + protein TIM barrel; + KEGG: cac:CAC1332 mannonate dehydratase" + /codon_start=1 + /transl_table=11 + /product="mannonate dehydratase" + /protein_id="ACL76025.1" + /db_xref="InterPro:IPR004628" + /db_xref="InterPro:IPR012307" + /translation="MKLSFRWYGETDPIKLEYIRQIPNMHSIVTALYDVPVGGVWSID + SIAALKKSVEDKGLVLDVIESVPVHEDIKLGLQSRKKYIDNYKENIKRLGEAGVKCIC + YNFMPVFDWTRTQLDKELPDGSTALVYYKEQLEKMNPLTGELSLPGWDSSYKKEDLKT + LFEEYSKVDEERLWENLEYFLKEIIPVAEEADVKMAIHPDDPPWNIFGLPRIISSEKD + LDRFLKLVDSPYNGLTFCTGSLGSGTFNDIYNMVDKYSKQNRIHFMHVRNIKILEDGS + FEESAHFSSYGSLDIVKIMSSLHKNHFDGYLRPDHGRMIWGETGKPGYGLYDRALGAS + YINGIWETLEKLNR" + gene complement(2018164..2019552) + /locus_tag="Ccel_1675" + CDS complement(2018164..2019552) + /locus_tag="Ccel_1675" + /inference="protein motif:TFAM:TIGR00792" + /note="TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) + transporter; + PFAM: major facilitator superfamily MFS_1; + KEGG: cpe:CPE0153 glucuronide permease" + /codon_start=1 + /transl_table=11 + /product="sugar (Glycoside-Pentoside-Hexuronide) + transporter" + /protein_id="ACL76026.1" + /db_xref="InterPro:IPR001927" + /db_xref="InterPro:IPR011701" + /translation="MRPFDNRDKIGYLFGDFGNDFFFFYISAYLMLFYTDVVGLSPVT + VGTIFIAARIWDAFADVLWGRFIDSRPATKRGKFRPWILRMFLPMIIFGVLTFTYFPN + MDINTHMIYSLLTYVVWGTLYSTVNIPYGSMASVISTDPIERASLSTFRSMGSSLGGI + AIGLIVPLVVFVNNKPVGSRFTKLAVVFAICATICYLLCYYLCIERVKTQVGVKQKFD + FKVTAKGIVRNRGLISLIFAALAVIFATLLSQGLNSYLFKDYFQNTIALTVAGVVTVL + PILIIAPAVSTIVKKFGKKESAAIGVLLSAIIFLLMFLLPIRSPWVFITFLFFGGLGV + GFFNATIWAFITDVVDYQEYLTGTREDGTIYSVYSFSRKIGQALSGGLSGFALAAIGY + ISVPKGQPAVVQTPEVANSIKGLATLGPAICYFVIFIILQFWYPLGKGKLSELQAYLK + EKHTGDDKLKPL" + gene complement(2019539..2020996) + /locus_tag="Ccel_1676" + CDS complement(2019539..2020996) + /locus_tag="Ccel_1676" + /inference="protein motif:PFAM:PF02614" + /note="PFAM: Glucuronate isomerase; + KEGG: csc:Csac_1949 glucuronate isomerase" + /codon_start=1 + /transl_table=11 + /product="Glucuronate isomerase" + /protein_id="ACL76027.1" + /db_xref="InterPro:IPR003766" + /translation="MTVKTFINNNFMLKSKTAASLYHFNAASVPIFDYHCHLSPKEIL + ENRTFSNMTEIWLAGDHYKWRLMRANGVDERCITGDADPYEKFLKWAETVPKCIGNPL + YHWTHLELKHYFDIDELLVPESAPEIWKACNNKLKSPEFTTRGIIERFNVKALCTTDD + PIDDLKSHIELEKDKNFKVKVLPTFRPDKALQIENTGFADWIASLSKVTEMNISSFED + LILALQKRAEFFKSIGCMISDHSFGYPDFTKGKLHEARSAFLKAMAGEELEQGEIEAY + KTQLMLALGRTYHRLGFAMQLHFGVVRNTNTKMLKSTGVDAGFDSIGNGISADSLISL + LDWMNKTDELPRTVIYCLNDTDNAKIASIIGCFQSTMFPSKLQLGAAWWFNDHRDGMV + NHMQTVANHGLLSGFIGMLTDSRSFLSYTRHDYFRRILCDLIGEWVEHEQVPLELDML + GSMVKDICFNNSVRYFGLKLENEVQENKRCYNETL" + gene 2021318..2022007 + /locus_tag="Ccel_1677" + CDS 2021318..2022007 + /locus_tag="Ccel_1677" + /inference="protein motif:PFAM:PF01323" + /note="PFAM: DSBA oxidoreductase; + KEGG: cpy:Cphy_1656 DsbA oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="DSBA oxidoreductase" + /protein_id="ACL76028.1" + /db_xref="InterPro:IPR001853" + /translation="MKIEFFHDVICSFCFPMSYQMRKVKKLMPEVSIEHRSFALVKDV + EDFNIMFGSREAAKQEIMSHWESANRNDDEHRFNIEGMKAASFPFPSSMKVLIAGKAA + YFTAGDMGYWDVFDALQQALFVENQNIEEDAIVFNCVRRAGINFDEWYKHYKNKETEK + AVQEDLILANKYQIHSVPCLVINETYKVSGAQPLSQIISAIEKASKDDGTGVTEQGGA + CRLDNGKFLCD" + gene 2022149..2022853 + /locus_tag="Ccel_1678" + CDS 2022149..2022853 + /locus_tag="Ccel_1678" + /inference="protein motif:PFAM:PF00027" + /note="PFAM: cyclic nucleotide-binding; regulatory protein + Crp; + KEGG: lsl:LSL_1782 Crp family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, Crp/Fnr family" + /protein_id="ACL76029.1" + /db_xref="InterPro:IPR000595" + /db_xref="InterPro:IPR001808" + /db_xref="InterPro:IPR012318" + /translation="MYHRGNYRSDHTHESHEACISLVPIFNHLESDQMDEIMKATKPV + SYKKGEIIYRAGAQSNSLYIVSNGKIRIYRLSESGKEQLVRILIPGDFTGELALFRES + IHESYAVAMEDTNVCMITRSDLQEFLLKFPSISLKILSEFSKRLETSEKQTTRFATEK + VETRLALFLAKCVDSGEKTTEFVLPMNKKNLASYLGTTPETISRKLTDFKNHGYIKQI + SHRKIRILDLDGLLLI" + gene complement(2023036..2023275) + /locus_tag="Ccel_1679" + CDS complement(2023036..2023275) + /locus_tag="Ccel_1679" + /inference="protein motif:SMART:SM00704" + /note="SMART: zinc finger CDGSH-type domain protein; + KEGG: vpa:VPA0765 putative glutamate synthetase" + /codon_start=1 + /transl_table=11 + /product="zinc finger CDGSH-type domain protein" + /protein_id="ACL76030.1" + /db_xref="InterPro:IPR006622" + /translation="MDKPVVAGKSPIPVELKKGETYYYCTCGKSSNQPFCNGAHEGTS + FKPMAFTADKDETAYLCTCKQTKNPPYCDGSHQNL" + gene complement(2023483..2024721) + /locus_tag="Ccel_1680" + CDS complement(2023483..2024721) + /locus_tag="Ccel_1680" + /inference="protein motif:PFAM:PF00464" + /note="PFAM: Orn/Lys/Arg decarboxylase major region; + glycine hydroxymethyltransferase; aromatic amino acid + beta-eliminating lyase/threonine aldolase; + aminotransferase class I and II; + KEGG: cth:Cthe_1058 serine hydroxymethyltransferase" + /codon_start=1 + /transl_table=11 + /product="glycine hydroxymethyltransferase" + /protein_id="ACL76031.1" + /db_xref="InterPro:IPR000310" + /db_xref="InterPro:IPR001085" + /db_xref="InterPro:IPR001597" + /db_xref="InterPro:IPR004839" + /translation="MYNIDTIKKIDSQLAEAIELEVNRQRNKIELIASENFVSDAVIE + ALGTPLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKQIFGAEHANVQPHSGAQANT + AVYFAFLNPGDTILGMNLAHGGHLSHGSPVNISGKYYKVVPYGVREDNCYIDYDELRK + TAKENSPKIIVAGASAYPRILDFKAFREIADEVGAILMVDMAHIAGLVAAGVHPSPVP + YADVVTTTTHKTLRGPRGGMILCKQEYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEA + LTDDFKIYQQNIVKNAKALASALMEKGFKLVSDGTDNHLMLINLTNMNITGKEAQHKL + DEVCITCNKNGIPFDTQSPFITSGIRLGTPAVTSRGMNEEDMKEIADLIHLTISDFEN + SRTNIIRRVEALCNKYPLYE" + gene complement(2024860..2025852) + /locus_tag="Ccel_1681" + CDS complement(2024860..2025852) + /locus_tag="Ccel_1681" + /inference="protein motif:PFAM:PF02769" + /note="PFAM: AIR synthase related protein; AIR synthase + related protein domain protein; + KEGG: cth:Cthe_1060 AIR synthase related protein-like + protein" + /codon_start=1 + /transl_table=11 + /product="AIR synthase related protein domain protein" + /protein_id="ACL76032.1" + /db_xref="InterPro:IPR000728" + /db_xref="InterPro:IPR010918" + /translation="MEPGKLPNDILNKIVFGKINTFRKEVIMRPGIGEDCAAIEFDKY + ACVMSTDPITAAGKNAGRLAVHISCNDIASSGVEPLGLMVTILCPVGTTETELEHLMD + QVCETAGQLNVEIIGGHTEVTPAVNKIILSTTCVGKSLKDKIISSSGAKPGDSVILTK + SAGLEGTAIIAGDFEEELAEVMNKNELQYAKSLINAISVVPEGVLAGRFGVTSMHDIT + EGGVLGAAWEIAEASSTGVTIKKDSIPVEPVTRHICDHFGINPLRLISSGCMIITCKD + GEGLVRLLGENNIKASIIGTITQNKTGRLLISEKEGTSENIEAPGADELYKIIK" + gene complement(2025994..2026686) + /locus_tag="Ccel_1682" + CDS complement(2025994..2026686) + /locus_tag="Ccel_1682" + /inference="similar to AA sequence:KEGG:Cthe_1061" + /note="KEGG: cth:Cthe_1061 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76033.1" + /translation="MNDLLYNKKVICPVCNREIEVTKVKTKGCRVKSRDTDLCVYYEG + INVLFYDVWVCEHCGYAALQDKFESIFTRDIPVIREKISSHWTRRSFSGERDVERALE + AFKLALLNLQVRKAKSSEMAKVCLRIAWLYRAKEDKKEIDFLTFAAESYNDAYQKERF + PLDKLDEYTCMYIIAELYRRIGKLNESVLWFSRIVSSSGARSNPKLIDMARDQYQLAK + DQLAANDGTVEA" + gene complement(2026988..2028166) + /locus_tag="Ccel_1683" + CDS complement(2026988..2028166) + /locus_tag="Ccel_1683" + /inference="protein motif:TFAM:TIGR00342" + /note="TIGRFAM: thiamine biosynthesis/tRNA modification + protein ThiI; + PFAM: thiamine biosynthesis protein; THUMP domain protein; + ExsB family protein; + KEGG: cth:Cthe_1063 thiamine biosynthesis/tRNA + modification protein ThiI" + /codon_start=1 + /transl_table=11 + /product="thiamine biosynthesis/tRNA modification protein + ThiI" + /protein_id="ACL76034.1" + /db_xref="InterPro:IPR003720" + /db_xref="InterPro:IPR004114" + /db_xref="InterPro:IPR004479" + /translation="MNKKIILVRYGEIILKGLNRPVFEDKLIGNIKSAIFKFGKARVI + KSQGRIYIEPQEENYDFDSVLVKVTKVFGVVSVSPVWKVETDYEIIKDTSLKLASKLV + EEKSYKTFKVETKRGNKRFPMQSPEISADVGGFILENIPQLSVDVKNPDFIIFLEVRE + STYIYSEMMKAQGGMPLGSNGKAMLLLSGGIDSPVAGWMMGKRGVEIEAVHFFSYPYT + SERAKQKVIDLAQIMAQYCGKIRLHVVPFTEIQLKINDNCPEEQLTIIMRRIMMKIAE + QIAVKVNAMALITGESMGQVASQTMQSLYCTDAAVNMPVFRPLIGMDKVEVVDIARRI + DTFDTSVLPYEDCCTVFVAKHPQTKPKLDRIIESESVVDFEPLINTAIENTEVIVIKP + " + gene complement(2028163..2029326) + /locus_tag="Ccel_1684" + CDS complement(2028163..2029326) + /locus_tag="Ccel_1684" + /inference="protein motif:PFAM:PF00266" + /note="PFAM: aminotransferase class V; + KEGG: cth:Cthe_1064 aminotransferase, class V" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class V" + /protein_id="ACL76035.1" + /db_xref="InterPro:IPR000192" + /translation="MINEIYLDNSATTKPYDDVVEYVAKVSRDFYGNPSSLHTKGIKS + ENLVKKARTQIAESLKVDSKDICFTSGGTESNNLAILGYLKANPRAGKHVITSEIEHP + SVLEVYKQLALEGYIVDFIPVDNKGVIRLDVLKDTVSDDTSIISIIHTNNETGSVQPI + EEICNLRNKLCPKAVIHIDAVQAFGKTLINPSTCNIDLMSISSHKIHGPKGVGGLYIR + KGLRLKPVLIGGGQESTLRSGTENVPGICGFGLATEIIFSKLDDNYKRTNELRNHFVK + RINETFAESVVNSPDSASPYIINVSFPNLKSEVLLHHLEQRNIFVSTGSACSSRKTHH + SHVLKAMGVSSKYIDGAIRFSLSHTNNVSEMDETIEALKEIIPIISIKRGGKR" + gene complement(2029411..2029686) + /locus_tag="Ccel_1685" + CDS complement(2029411..2029686) + /locus_tag="Ccel_1685" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbl:CLK_1174 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76036.1" + /db_xref="InterPro:IPR001594" + /translation="MPKGGMHDYKSRVSKMKDQCELYDRECIDCGECDICDIDPTKHC + DDCGRCIDEIDEYRSITIQDFMKENITKDQLKNLSKKLAEKENNQKK" + gene complement(2029692..2030492) + /locus_tag="Ccel_1686" + CDS complement(2029692..2030492) + /locus_tag="Ccel_1686" + /inference="protein motif:PFAM:PF01058" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; NADH ubiquinone oxidoreductase 20 kDa subunit; + KEGG: rci:RCIX2382 hydrogenase, small subunit-like protein + (HycG-like)" + /codon_start=1 + /transl_table=11 + /product="NADH ubiquinone oxidoreductase 20 kDa subunit" + /protein_id="ACL76037.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR006137" + /db_xref="InterPro:IPR006138" + /db_xref="InterPro:IPR017900" + /translation="MYNIVKKLVQHGTVTVEYPKKNTKSTYITGIPEFDYSKCTRCKK + CISVCPTGAVVMTDKDGQRGKFPDVNADECIFCRFCEEACSNQAVSLSNKFELAQKSR + ELLRAAPLYVGDKDVNGIDYELIGKKLNQKIGKKFGRSLHIREVDAGSCNGCDYEVQA + LNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAGAC + ACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKAIGRL" + gene complement(2030516..2032108) + /locus_tag="Ccel_1687" + CDS complement(2030516..2032108) + /locus_tag="Ccel_1687" + /inference="protein motif:PFAM:PF00329" + /note="PFAM: NADH dehydrogenase (ubiquinone) 30 kDa + subunit; + KEGG: rci:RCIX2383 hydrogenase, large subunit-like protein + (HycE-like)" + /codon_start=1 + /transl_table=11 + /product="NADH dehydrogenase (ubiquinone) 30 kDa subunit" + /protein_id="ACL76038.1" + /db_xref="InterPro:IPR001268" + /db_xref="InterPro:IPR014029" + /translation="MVSAAILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCIN + VYKNIECVLVGLFANDTTPIDNKLTVYYTFAVRSSNTLITLYSKLENDGSAKVDSIAL + EVPAASLYEREIHDMYGIVFEELPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRE + LEFSTITGEGVFEVPVGPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCEN + QHYMKVLLFSERISGDETFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGH + LGDIQGLCVDTAYIFPSGQFAMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNE + KIILECINKLDKEFKETVAIIKNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVK + TDVRKEFPYAAYSKLKFNVPEHSNCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPV + SVDIGELKPYSYAFGMTESPRGENLHFVMTGENNTIFRYKVRTPSFCNWPALCHAVNT + NTLTDFPLINKSFNLSYAGNDL" + gene complement(2032112..2033599) + /locus_tag="Ccel_1688" + CDS complement(2032112..2033599) + /locus_tag="Ccel_1688" + /inference="protein motif:PFAM:PF00361" + /note="PFAM: NADH/Ubiquinone/plastoquinone (complex I); + KEGG: rci:RCIX2384 hydrogenase, membrane subunit 1-like + protein (EchA-like)" + /codon_start=1 + /transl_table=11 + /product="NADH/Ubiquinone/plastoquinone (complex I)" + /protein_id="ACL76039.1" + /db_xref="InterPro:IPR001750" + /db_xref="InterPro:IPR003916" + /db_xref="InterPro:IPR003918" + /translation="MIAAFVVIPVLAGGLVWISKNKFFIHAINLIGASGLLVLSILSL + ININKYKVISSSGLFKNIFYMDSLSGYILFITTLAFFLVSLYSISYFGQELKNKVITI + RKLKLYYSLSNAFVLSMILALTTRNMGVMWISIEATTLASAFLVGFYNNKRAIEAAWK + YLIICSVGITFALLGIILLFYSSTVKLGGARISGMDWSYLIKYASALDPSILKIAFIF + ILIGFGTKVGFSPMHTWLPDAHSQAPSPVSALLSGVLLNTAMYGVIRVMSIVNKCLGS + SNYTGNLLIVLSVLSIGTAAVFILVQQDYKRILAYSSIEHMGIIALGLGVCTPISIFA + ALYHTFNHAMTKLMLFLATGNVYLKHHTKKISSIRGLIKTMPVTGIVFVLGTFAITGM + PPFGVFMSEFNTVVGTIFSKRYIVTALLLIFLSMVFAGFTKQLGKMFYGNNSNPQIKK + GEIDIIGPAVLIILLCITVLAGIYIPVPFKELMENTTDIILGIGG" + gene complement(2033625..2034287) + /locus_tag="Ccel_1689" + CDS complement(2033625..2034287) + /locus_tag="Ccel_1689" + /inference="similar to AA sequence:KEGG:RCIX2385" + /note="KEGG: rci:RCIX2385 hydrogenase, membrane subunit + 2-like protein" + /codon_start=1 + /transl_table=11 + /product="hydrogenase, membrane subunit 2-like protein" + /protein_id="ACL76040.1" + /translation="MYNNVLNLLAILILISSFTLVANKRQNAYITTFRMQSVLLALIS + LIVSVKSMVESKKFDEVFFIFLLIVVFKVFLIPMVMRRTSNRVEYKVEKDFFINIPIS + MLICCGLVVLCWYVVFNIEGITNPATENYLIYSLSVVMIGLFFMISRKKALGQIIGFL + VIENGLFLSAMLTTGGMPMIVELGLFFDLLTAFLIMGIFVFKINNTFNSIDINKLKQL + KG" + gene complement(2034312..2035250) + /locus_tag="Ccel_1690" + CDS complement(2034312..2035250) + /locus_tag="Ccel_1690" + /inference="similar to AA sequence:KEGG:RPD_3854" + /note="KEGG: rpd:RPD_3854 respiratory-chain NADH + dehydrogenase, subunit 1" + /codon_start=1 + /transl_table=11 + /product="respiratory-chain NADH dehydrogenase, subunit 1" + /protein_id="ACL76041.1" + /translation="MFVSILKFIFQMIFLLLIAPLFTGIIRKIKSKIQHKIGASIFQP + YYDLIKLLKKDLVVSSTSSWIYTVAPYVYFITSLAAAMCLPIIYQFKGFSFYTDLLVI + VYLLVAGRIFMALAGLDTGSTFGGMGSSRELLVSALVEPALFLIIITVGANPEVASTS + VFSIYEYAVKESIGAFSTVNILLFVAMLMVMIAESSRIPVDDPSTHLELTMVHEAMTL + EYSGRHLAFIEMGSYIKQLVFMTFMANILIPVGLNMENILAGLSIYLLKLLVITFLAA + IIEINTVKFRLFSLPNYAAIALIISVLGFLTRFVLI" + gene complement(2035278..2037344) + /locus_tag="Ccel_1691" + CDS complement(2035278..2037344) + /locus_tag="Ccel_1691" + /inference="protein motif:PFAM:PF00361" + /note="PFAM: NADH/Ubiquinone/plastoquinone (complex I); + KEGG: rci:RCIX2387 hydrogenase, membrane subunit 4-like + protein (HycC-like)" + /codon_start=1 + /transl_table=11 + /product="NADH/Ubiquinone/plastoquinone (complex I)" + /protein_id="ACL76042.1" + /db_xref="InterPro:IPR001750" + /db_xref="InterPro:IPR003916" + /db_xref="InterPro:IPR003918" + /translation="MLSNQIAVLFIICIVLYMTGALTSLASYSSPKWSNRLSNSFALL + ASSLLTFLMIYKLIYSRDVSTKLDFNTNIPFLSIEFNIDSLSAFFIMIISIVAVIVSL + FSYTYMSHYFSKKNISVFGCLYNLFIVSMVLLVASSNMLLFLVFWELMSLISFFLVIY + EHEKDEVQKAGRIYIIMTYIGTVCIMAAFVLIAAYTGSFNLSSINPQSIPHGSANIIF + LLLLVGFGTKAGIIPVHIWLPYAHPVAPSNISALMSGVMIKMAIYGLFRFIFNILPVS + GLWWGVAVLCIGIASALIGIAYSVASTTNIKRLLAYSSIENMGIILAGIGMMMIARAS + ENYPLLSLSLTATLLHTLNHAVFKSLLFMGAGTIQYSTHTKNMEKLGGLIKKMPAASV + FIFIGCLSISAVPPFNGFISEFMIFRTIISSISYFAPSENFLLVVILMVAAAALALTG + ALVAFCFVKFFGISFLGMPRSLKAESAKEPGKPMLAALASAAVLCLLLGILPKYAIRL + IDGVGSQLINIKMLATDWSLLSPQYYPVGNSSLSISSGLTAILLVLLGGLLLVVVMAL + RKRTSVERYNTWDCGFTKLNPKMQYSATGFSKSLRIIFRGFFKPGRDLEITEGIAPYH + IKEGKYTTSTVRFFEKYLYVPIISTIIKFSRKIRFTVQTGSIHAYLMYFFVAMVLMLL + YYSFTA" + gene complement(2037500..2037790) + /locus_tag="Ccel_1692" + CDS complement(2037500..2037790) + /locus_tag="Ccel_1692" + /inference="protein motif:PFAM:PF01476" + /note="PFAM: Peptidoglycan-binding LysM; + KEGG: cth:Cthe_0772 peptidoglycan-binding LysM" + /codon_start=1 + /transl_table=11 + /product="Peptidoglycan-binding LysM" + /protein_id="ACL76043.1" + /db_xref="InterPro:IPR002482" + /translation="MARKKYVLKDKKRFFSFLFFSLFLTFTLVYTVSVAGFTEKKYIS + VTVEKGDSLWSIASKYGGNTDIRKKIYLIKKINHMDSSDLSENASILVPVNK" + gene 2038007..2038654 + /locus_tag="Ccel_1693" + CDS 2038007..2038654 + /locus_tag="Ccel_1693" + /inference="protein motif:TFAM:TIGR00498" + /note="TIGRFAM: LexA repressor; + PFAM: LexA DNA-binding domain protein; peptidase S24 and + S26 domain protein; + KEGG: cth:Cthe_0773 SOS-response transcriptional + repressor, LexA" + /codon_start=1 + /transl_table=11 + /product="SOS-response transcriptional repressor, LexA" + /protein_id="ACL76044.1" + /db_xref="InterPro:IPR006197" + /db_xref="InterPro:IPR006199" + /db_xref="InterPro:IPR006200" + /db_xref="InterPro:IPR011056" + /translation="MAKKNSNKQQEILDYVYKCVHENGYPPSVREICSAVGFKSTSTV + HSYLQKLIDKGHLQKDPTKPRAIKILNKTSQVQENRTNKEGYYTSREMVDVPVVGRVT + AGQPILAVENITDTFPLPVDFVQNSDAFMLRIQGESMIDAGILDKDFVLVRQQSSANN + GDIVVALIGDEATCKTFYREKDHIRLQPQNSSMEPIVVKDELSILGKVIGVFRRM" + gene complement(2038748..2038990) + /locus_tag="Ccel_1694" + CDS complement(2038748..2038990) + /locus_tag="Ccel_1694" + /inference="protein motif:TFAM:TIGR02383" + /note="TIGRFAM: RNA chaperone Hfq; + PFAM: Like-Sm ribonucleoprotein core; + KEGG: cth:Cthe_0774 RNA chaperone Hfq" + /codon_start=1 + /transl_table=11 + /product="RNA chaperone Hfq" + /protein_id="ACL76045.1" + /db_xref="InterPro:IPR001163" + /db_xref="InterPro:IPR005001" + /translation="MVKNTINLQDIFLNQVRKEHIAVTIYLTNGFQLKGLVKGFDNFT + VVLDTDGKQQLVYKHAISTISPMKSVNLIFNEQGKE" + gene complement(2039144..2040070) + /locus_tag="Ccel_1695" + CDS complement(2039144..2040070) + /locus_tag="Ccel_1695" + /inference="protein motif:TFAM:TIGR00174" + /note="TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate + transferase; + PFAM: tRNA isopentenyltransferase; + KEGG: cth:Cthe_0775 tRNA delta(2)-isopentenylpyrophosphate + transferase" + /codon_start=1 + /transl_table=11 + /product="tRNA delta(2)-isopentenylpyrophosphate + transferase" + /protein_id="ACL76046.1" + /db_xref="InterPro:IPR002627" + /translation="MNRIIVIVGPTASGKTNLSIELAKAMDGEIISADSMQIYKYMDI + GTAKPTKDEMQGIKHYLINEVLPSEDFNVVRFKELAEKYIVKILEKNKQPIVAGGTGL + YISSLINNINFSESESDWELREALKKEVDELGPEHLHKKLQEVDPDSALNIHPNNIKR + VIRALEVYYQTHKPISYHNEISRKTPPKYEFILVGLSMDRQVLYERINRRVDIMVENG + LVDEVKKLVNLGYADSIISMQGIGYKEILEYLRNTYTLEQAIENIKQGTRRYAKRQIT + WFKRINGIKWFNLDNSGNNINVFNEIYEYIKG" + gene complement(2040083..2042080) + /locus_tag="Ccel_1696" + CDS complement(2040083..2042080) + /locus_tag="Ccel_1696" + /inference="protein motif:TFAM:TIGR00585" + /note="TIGRFAM: DNA mismatch repair protein MutL; + PFAM: ATP-binding region ATPase domain protein; DNA + mismatch repair protein domain protein; MutL dimerisation; + KEGG: cth:Cthe_0776 DNA mismatch repair protein MutL" + /codon_start=1 + /transl_table=11 + /product="DNA mismatch repair protein MutL" + /protein_id="ACL76047.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR013507" + /db_xref="InterPro:IPR014762" + /db_xref="InterPro:IPR014763" + /db_xref="InterPro:IPR014790" + /translation="MGRIIVLDENTSNKIAAGEVVEKPASVVKELVENSIDAGATSIS + VDIKNGGISYIKIADNGIGMDEDDVEIAFERHATSKIKRAEDLDSVITMGFRGEALAS + IASVASVELMTKTAASAYGMYVHVRGGVLQDVRQTGCPVGTTFIIKDLFFNTPARYKF + LKKDSTEAGYISDTISRIALGNPNISFKLTNGKTPLIHTPGNNDLKSVIYSIYGKEII + KNLVHIEYADDKVKISGYIGKPEAARSNRNYQSLYINKRYVKSKLVSYSVEQAFSSIL + MKNRFPFFVLNIDINPILVDANVHPAKIEVRFADESYLSRTIYMAVSNALTTGGGLFN + PVSVPDKDRELFKFADNSQPKKEYVQNEIQLNNKQEENKKADEIRLFTKALEPLAKVD + VHKVSTAAEKQPADTSSFTFTRSEDYNVGQPKNLITNVKQENSDELKNNSPGIREDDS + SQNFDETINKQDQEVNKERVYTELADMKYIGQAFSTYILLQNNDELVMVDQHAAHERI + IYEKLRAKFDSQENTTQLLLEPVVIQLQPFEIDTIKAKEKLLTGIGFVYEDFGNNTII + IRGIPYMVGDYSPRDIFIELTQKLQESIKPVSTPLADEIIHTIACKAAIKANKKLDEK + EVHQLLTELSNTGRRYTCPHGRPTVIRLTKNEIEKMFKRIV" + gene complement(2042106..2044727) + /locus_tag="Ccel_1697" + CDS complement(2042106..2044727) + /locus_tag="Ccel_1697" + /inference="protein motif:TFAM:TIGR01070" + /note="TIGRFAM: DNA mismatch repair protein MutS; + PFAM: DNA mismatch repair protein MutS domain protein; + MutS III domain protein; MutS II domain protein; MutS IV + domain protein; + KEGG: cth:Cthe_0777 DNA mismatch repair protein MutS" + /codon_start=1 + /transl_table=11 + /product="DNA mismatch repair protein MutS" + /protein_id="ACL76048.1" + /db_xref="InterPro:IPR000432" + /db_xref="InterPro:IPR005748" + /db_xref="InterPro:IPR007695" + /db_xref="InterPro:IPR007696" + /db_xref="InterPro:IPR007860" + /db_xref="InterPro:IPR007861" + /translation="MGTVTPMMQQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRE + LEITLTGRDCGLEERAPMCGVPFHAADNYIARLVSKGYKVAICEQVEDPALAKGIVKR + DVVKVVTPGTVTDITMLDERKNNYLMSVYKNGNFYGLASVDITTGDFYATRITWGNTR + GKLLDEIAKYLPSEIIVNNELNSDNELTSEIKQRFNTYVSTFEETSFEYGNSMDILAN + HFEKQTLNIQEYDIAVNASGALLKYLESTQKVNLSHIQKFNSYALEEYMILDASSRRN + LELTETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLDAVEELKN + KFMVRVEARELLKRVYDIERLMGKVVLGSVNCRDLIALKNSMCQIPYIKSLLNGFEAE + YIKNCGEQLDCLEDVCNLIEVSIIDEPPVTIKEGGIIKDGYNPEVDKLRMASIQGKDW + IAALEASQREKTGIKNLKVGFNRVFGYYIEVTKSYFSLVPEEYIRKQTLSNCERYITP + ELKEIEDTILGAEEKIIQLEYSLFVEIKEKIAEQLSRIKSTARALAEIDVLASLAEVA + DREGYCKPEVSLSDKIEIIEGRHPVVEKMTDKSGFVPNDTVLDMEEDRLAIITGPNMA + GKSTYMRQTALIVLMAQIGSFVPAATAKIGLVDRIFTRVGASDDLASGQSTFMVEMSE + VANILINATKRSLLVLDEIGRGTSTFDGLSIAWAVIEYIVNKEQLGCRTLFATHYHEL + TELEGKLPGIKNYCITVKEKGEDVIFLRKIIRGGADGSYGIQVAKLAGVPQSVIDRAK + EILSNLDDADINRSGKARRIKKQVDGQLDLFAQAAKASADAEILEEIRKIDISRLTPI + DSMNILYELQRKMNNRE" + gene complement(2044806..2045192) + /locus_tag="Ccel_1698" + CDS complement(2044806..2045192) + /locus_tag="Ccel_1698" + /inference="similar to AA sequence:KEGG:Cthe_0778" + /note="KEGG: cth:Cthe_0778 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76049.1" + /translation="MDIIEKARELGQLLAKSKEMQEYNTTEAAMKSDDKSNTLMSEYK + QLQIEMVKLTRGEAETQAIEETKEKLLAKQLEINSYSVTMNYLTAKGNLEALMKKVND + ILVYSITGESECSDDKCKSCGGGCRG" + gene complement(2045211..2046647) + /locus_tag="Ccel_1699" + CDS complement(2045211..2046647) + /locus_tag="Ccel_1699" + /inference="protein motif:TFAM:TIGR00089" + /note="KEGG: cth:Cthe_0783 RNA modification protein; + TIGRFAM: RNA modification enzyme, MiaB family; + tRNA-i(6)A37 thiotransferase enzyme MiaB; + PFAM: deoxyribonuclease/rho motif-related TRAM; Radical + SAM domain protein; Protein of unknown function UPF0004; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="RNA modification enzyme, MiaB family" + /protein_id="ACL76050.1" + /db_xref="InterPro:IPR002792" + /db_xref="InterPro:IPR005839" + /db_xref="InterPro:IPR006463" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013848" + /translation="MSEGKRITTKVSAEEINQQYKYIETIKQYNQGVISSIGKPVRYI + IETFGCQMNENDSERLSGMLSGMGYSECSERKDSDLIIFNTCCVRENAEQKVYGHLGA + LKKLKETNPNLIIAICGCMMQQKDVVEHIKKTYKHVDIVFGTHNLYKFPELLNTAITT + RSTVIDVWDSTGSIAENMPISRKENIKAWVTVMYGCNNFCSYCIVPYVRGRERSRSLE + EIKNEVEKLAKDGCKEITLLGQNVNSYGKDLEGDLTFAGLLRELNKVQGIERIRFMTS + HPKDLSDELIYAMRDCEKVCEHLHLPVQAGSSKILDEMNRRYSKEQYLGLIEKVKSNI + PGIALTTDIIVGFPGETEEDFNETLDVVAKARFDMAYTFLYSKRTGTPAAKNPEQIPE + TVKKQRFDRLLELQNKISKEINDGLLGKELEVLVEGLSKSSKTTYTGRTRENKIVNFK + GSPDMVGKLVKVKIEEIQTWSLLGKINK" + gene complement(2046714..2047268) + /locus_tag="Ccel_1700" + CDS complement(2046714..2047268) + /locus_tag="Ccel_1700" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: csc:Csac_1138 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL76051.1" + /db_xref="InterPro:IPR000182" + /translation="MRVIRPAMSDDAAAMSYIHSRTWKAAYKEFISQEYLDNITDEGW + IQIFKRSIVKNIHEVAVFELNNRITGCITYGRGRIGQTCAMSDSVVSDNSSCSGENSG + EIISLYVLPEYWNSKQGYELTRFAVERLRQQGFKDCYLWVIKDNERAKKFYRRFGFNS + TKTFAAVNLGGRDIVEEKFNYILI" + gene 2047425..2047853 + /locus_tag="Ccel_1701" + CDS 2047425..2047853 + /locus_tag="Ccel_1701" + /inference="protein motif:PFAM:PF03061" + /note="PFAM: thioesterase superfamily protein; + KEGG: cph:Cpha266_1470 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="thioesterase superfamily protein" + /protein_id="ACL76052.1" + /db_xref="InterPro:IPR003736" + /db_xref="InterPro:IPR006683" + /translation="MEKEIIKFFEKDRFAHFVGIELTKVGAGFAETSLDLSEKHMNGL + DIVQGGAIFTLADFAFAAATNSNGLATVGINSNITYFKAPKGKKITAVAKETSAGNKI + CGCDVDVLDEDGTLIAKFSGTGYRKGLKIDFSTGILTKMK" + gene complement(2047877..2048095) + /locus_tag="Ccel_1702" + CDS complement(2047877..2048095) + /locus_tag="Ccel_1702" + /inference="similar to AA sequence:KEGG:Daud_0830" + /note="KEGG: dau:Daud_0830 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76053.1" + /translation="MILYTIYDHSVVMGSTSGNAENELGYSEMNINGVQVQVSRCGNS + DYQIQRIISTNPYDFLNPMIQPGTTIPK" + gene complement(2048092..2048856) + /locus_tag="Ccel_1703" + CDS complement(2048092..2048856) + /locus_tag="Ccel_1703" + /inference="protein motif:PFAM:PF00574" + /note="PFAM: peptidase S14 ClpP; + KEGG: cth:Cthe_1097 ATP-dependent Clp protease proteolytic + subunit ClpP" + /codon_start=1 + /transl_table=11 + /product="peptidase S14 ClpP" + /protein_id="ACL76054.1" + /db_xref="InterPro:IPR001907" + /translation="MNNKNYENNQGPETQPAEQSKPAPELQQLKELGTPEIPKEETNI + HCLTIIGQIEGHILLPPHNKTTKYEHIIPQLVAIEESKQIEGLLLVLNTVGGDVEAGL + AISEMVSSLSKPTVSLVLGGGHSIGVPMAVSANYSFIASSATMTIHPIRMNGLVIGVP + QTYEYFDKMQERVVNFVCSHSGIKKEKFRELMLKTGELANDVGTVLFGEEATQTGLIN + QVGGLSDAIKKLNELIEINRKKNAENPAQQPEGRLQ" + gene complement(2049005..2049592) + /locus_tag="Ccel_1704" + CDS complement(2049005..2049592) + /locus_tag="Ccel_1704" + /inference="protein motif:TFAM:TIGR02852" + /note="TIGRFAM: dipicolinic acid synthetase, B subunit; + PFAM: flavoprotein; + KEGG: cth:Cthe_0421 dipicolinate synthase subunit B" + /codon_start=1 + /transl_table=11 + /product="dipicolinic acid synthetase, B subunit" + /protein_id="ACL76055.1" + /db_xref="InterPro:IPR003382" + /db_xref="InterPro:IPR014214" + /translation="MLLEGIKVGFALTGSFCTFNKAVPQIENLINEGAEVFPIISQVV + NDFDTRFGTAEDLKAKLKQITGKAPVCTIIEAEPFGPKEILDILVIAPCTGNTIAKIA + NAVTDTSVTMACKAHLRNARPVVIGVSTNDGLSANAKNIGVLLNTKNIYMVPFGQDDP + TKKCTSLVADFEKTIPTVVEALKNKQIQPILIHNN" + gene complement(2049595..2050470) + /locus_tag="Ccel_1705" + CDS complement(2049595..2050470) + /locus_tag="Ccel_1705" + /inference="similar to AA sequence:KEGG:Cthe_0420" + /note="KEGG: cth:Cthe_0420 dipicolinate synthase subunit + A" + /codon_start=1 + /transl_table=11 + /product="dipicolinate synthase subunit A" + /protein_id="ACL76056.1" + /translation="MVRGKSYSIIGGDLRSVKLAELIAQDGNSVNIYGFTTAGFEIML + EQSKTLTEAVVDADVVIGPIPCSNDNEFINAPFHNESIHINELFKVMNKNQLFLAGRI + SDKIAHLAQVCNVYTIDLLEREEMAVLNGIPTAEGAIQIAMEEMPITLHNSNTLILGY + GRIGKILAKMLHGIGSNVYVEARKYADLAWIKSLGYSPVMLSDLSHILKKIDVIFNTI + PSMVLNYELLKLLNPECLIIDLASKPGGVDFNKAKDLGVKAIWALSLPGKVAPVTAAI + FIKDTTYNIIEELGV" + gene complement(2050666..2051901) + /locus_tag="Ccel_1706" + CDS complement(2050666..2051901) + /locus_tag="Ccel_1706" + /inference="protein motif:PFAM:PF05193" + /note="PFAM: peptidase M16 domain protein; + KEGG: cth:Cthe_0419 peptidase M16-like protein" + /codon_start=1 + /transl_table=11 + /product="peptidase M16 domain protein" + /protein_id="ACL76057.1" + /db_xref="InterPro:IPR001431" + /db_xref="InterPro:IPR007863" + /db_xref="InterPro:IPR011765" + /translation="MFKKVQLSNGLRLVYEKIPYVRSVSVGLWVGTGSRNETSENNGI + SHFIEHMLFKGTAKRSAKDIAECIDSIGGQINAFTGKECTCYYTKTLDTHLDIAMDVL + SDMFFNSSFASDDISVEKRVVVEEIGMYEDTPEELVHDIFSEMVWDGNPLGYPILGTE + KCINKFDKDMILKYMEEFYTPYNTVISVAGNFDEGKLIELVNNYFQNWKSKETYNNNF + SPAQYKVNKIVREKDTEQVHLCMGFEGIGHGSDKLYSLLSLNNILGGGMSSRLFQNIR + EKRGLVYSIYSYPSTYQGSGLFVVYAGMNPEYFQTVIDLTKAELETIIKEGITKDELA + KTKEQLKGNYILGLESTSSRMNSIGKSELLTGKIKTPEEILQKIDRVDMDSIDEMIKR + VFNFEKMSISAVGNIKNKL" + gene complement(2051987..2054098) + /locus_tag="Ccel_1707" + CDS complement(2051987..2054098) + /locus_tag="Ccel_1707" + /inference="protein motif:PFAM:PF01138" + /note="PFAM: 3' exoribonuclease; RNA binding S1 domain + protein; KH type 1 domain protein; Exoribonuclease, + phosphorolytic domain 2; Polynucleotide phosphorylase, + phosphorolytic RNA-binding, bacterial/organelle-type; + SMART: KH domain protein; + KEGG: cth:Cthe_0418 polynucleotide + phosphorylase/polyadenylase" + /codon_start=1 + /transl_table=11 + /product="3' exoribonuclease" + /protein_id="ACL76058.1" + /db_xref="InterPro:IPR001247" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR004087" + /db_xref="InterPro:IPR004088" + /db_xref="InterPro:IPR015847" + /db_xref="InterPro:IPR015848" + /translation="MFKSFSMELAGRTLTVETGKLAQLANGSALIRYGDTVIMSSATA + SAAPRDGIDFFPLSVDYEERLYAVGKIPGGFIKREGKPSEKAILTSRVIDRPIRPLFP + KDLRNDVAVVNTVMSVEQDNSPEIAAMIGASVAISISDIPFNGPIGGVVLGLVDGEVI + INPNEEQRAKSKMYVTLAGTKEKITMIEAGADIVPDDVMFDAIKKGHEEIKKICDFIN + GIVKEVGKAKFTYESADVPADLFEVVKEFAYDKMRIAVLATDKQDRDAKVSQLTEETQ + AALAEQFPEMESKINDALYKLEKKVVREYILKEGKRIDGRRLDEIRTLSAEVGILPRT + HGSGLFERGQTQVLTTVTLGAMGDVQMLDGIDTEETKRYMHHYNFPGYSVGEAKTSRG + PGRREIGHGALAERSLVPVIPTETEFPYAFRLVSEVLMSNGSTSQGSVCGSTLALMDA + GVPIKAPVAGISAGLVIDEENPDNFVTFMDIQGIEDFFGDMDFKVAGTTEGITAIQMD + IKVDGLSYEIIRQAFELTRMGRLQIINDVILKAIPQPRKELSEYAPKIITTNIDPEKI + RDVIGPGGKMINKIIAETGVKIDIEEDGRVYILTPDSAAAQKALKIIQGIAKDIEPGE + VYLGKVVRITTFGAFVEILPGKDGLVHISKLDKKRVEKVEDVVSIGDEILVKVTEIDK + QGRINLSRKDAMAEENTTEEK" + gene complement(2054360..2054623) + /locus_tag="Ccel_1708" + CDS complement(2054360..2054623) + /locus_tag="Ccel_1708" + /inference="protein motif:PFAM:PF00312" + /note="PFAM: ribosomal protein S15; + KEGG: cth:Cthe_0417 30S ribosomal protein S15" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S15" + /protein_id="ACL76059.1" + /db_xref="InterPro:IPR000589" + /db_xref="InterPro:IPR005290" + /translation="MVKDLKQEIITKYQLHEGDTGSPEVQVAILTQRINHLNEHLKIH + KKDYHSGRGLLKMVGARRSLLNYLKKNDIERYRAIIQKLGLRK" + gene 2054897..2055862 + /locus_tag="Ccel_1709" + CDS 2054897..2055862 + /locus_tag="Ccel_1709" + /inference="protein motif:PFAM:PF07726" + /note="PFAM: ATPase associated with various cellular + activities AAA_3; ATPase associated with various cellular + activities AAA_5; + KEGG: cth:Cthe_1054 ATPase" + /codon_start=1 + /transl_table=11 + /product="ATPase associated with various cellular + activities AAA_3" + /protein_id="ACL76060.1" + /db_xref="InterPro:IPR011703" + /db_xref="InterPro:IPR011704" + /translation="MVYIINNSAQLKKIVDNVENVIVGKRNSIELAIIALISNGHVLL + EDVPGVGKTSLVSALSKSISASFKRIQFTPDVLPSDITGFSIFNQKTGEFEFRPGTAM + CQILLADEINRTSPKTQSSLLEVMEENQVTVDGTTYKLPKPFMVLATQNPIEYIGTYP + LPEAQMDRFFIKISLGYPQQGEEVYILSRFLEDNPLETLEAVATSDDILQIQKDVKQV + YIDKTLKNYVVDIVSMTRKNQYIALGASPRGSIAVCRAAQAWAYFNGRDYVIPEDIKK + MLLPTLSHRIVLKQEAKLKKMSSSDILTSIIEKVYIPLVDNYEKK" + gene 2055849..2057054 + /locus_tag="Ccel_1710" + CDS 2055849..2057054 + /locus_tag="Ccel_1710" + /inference="protein motif:PFAM:PF01882" + /note="PFAM: protein of unknown function DUF58; + KEGG: cth:Cthe_1055 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF58" + /protein_id="ACL76061.1" + /db_xref="InterPro:IPR002881" + /translation="MRKNRITFIFLFILSIVFLYNFGGFVSYFFFNTFLALLILSIAY + TIFIFVRIKFIQEIDKRVIIKGENVKLVVKISNEDILLYPYVFASFYSSHSALKGENS + SQSLSINPKSHKEFIFDMECKFRGEYEVGLREIYIEDFLGLIKLKYKIPEPKKIIVYP + KIEHLSNFSILSSGSSDSQSVENGIQDNMNNIKDIREYIDGDSFRKIHWKLTARNDKL + MIKNYEGSIDANVNILLDLRKNVYNDEENIIIEDKLIEAVVAVLYFYLSKSIPVNYVY + FSEKLEVFKASTMMDFEQIYKTLSCVNFDQQVAMPDILRLHSESCSNSSDMIVFTSIL + DIDLYNEMYKSQMANHTVTLIYVSPDSFGNVKSSIIEDIMDNLPEIGIKAYSIHPDDD + IKILLGGSD" + gene 2057054..2059474 + /locus_tag="Ccel_1711" + CDS 2057054..2059474 + /locus_tag="Ccel_1711" + /inference="protein motif:PFAM:PF01841" + /note="PFAM: transglutaminase domain protein; + KEGG: cth:Cthe_1056 transglutaminase-like protein" + /codon_start=1 + /transl_table=11 + /product="transglutaminase domain protein" + /protein_id="ACL76062.1" + /db_xref="InterPro:IPR002931" + /translation="MVRENKYGVFANLILVMLLSLSVCQTLYTSLFMTYKWSINIFLY + VIPLTFVFYLMLKNKVTCIVSGIILFLLSGFAFVIMYISNSLSSYSIWLIDTMQGYLD + EPNFSYQAITVFFITFFVTLMVYIFAIKLYNIYLVSFVTFSLFFGQAYANIFVSKPAF + VLFLFSFLLYYFFYILKGRTEEKSYDPGNRLKYLLYIIPVCIAVLIVSLNFPIGNKRI + SWHWLDNRLDKAIESFSQKNTSSFDFFSLNATGFGSNDILGGNISPDKTHVMDVKSEY + YNLYLKASSKAYYNGHGWYDNDSVYIPVFENPGQALNNINMDANQLEAGTMINNSNAN + NELYKSSKIEVKFKNIKTKSLFIPANTLQITPKKQLGLFIDNYGMISAEKPQGSNFEY + IVNYNYLFLNSEKFKNSIRKSYKGYLMNNIDAYEKNQYKLLFNIDIDNLSDEDKNVIA + NIDLFNGIQDQLLDINTKYVSLPSTVTKRVRDLAENITMSKDNNYDKAKAIETYLATN + YPYTLKPGKPPLKKDFVDFFLFEGKKGYCTYYATAMTVLLRCIGIPARYVEGYILPPD + NRNGVFKVTNQQAHAWVEVYFEGFGWIPFEPTSPFVAAMYQDNNIRPVIASNMNGQYY + DEYRKMMEKYQREGKNQPLDLSENLPVGNKESTTPRVAFIVAVSLISLILLALLSVCL + FNRIRFYCLLGKIRKQNTNEAVLTAYRYLLKLFRIQDVSISAGETPSQFGMRVEKLMD + FKGYSFNKYDFNIITEYYVKARYSRDNLPDKAKQEIIDFIDTVLKLTSEKVSRIKFNI + YKYFLGKV" + gene complement(2059607..2060479) + /locus_tag="Ccel_1712" + CDS complement(2059607..2060479) + /locus_tag="Ccel_1712" + /inference="protein motif:PFAM:PF00892" + /note="PFAM: protein of unknown function DUF6 + transmembrane; + KEGG: tde:TDE2471 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF6 transmembrane" + /protein_id="ACL76063.1" + /db_xref="InterPro:IPR000620" + /translation="MPKMALFFAAFIWGSSFFIMKDTVDVFPPHILLGFRFTIACILL + SVVFYRRLKNINFEYLWKGGVIGLFLFLGYSTQTIGITNTTPGKNAFLTAIYCVIVPF + LFWIVDKSKPDIYNYSAAVICLTGIGLVSLTGSFTIGIGDAFTLLGGFIYATHLVAVA + KLGRGKDPIILTIIQFGYAGVFSWIIGLTTEYFPTEVSIKNVTGLLYLAIFATAVALL + FQNIGQKYTHPSAAAIILSLESVFGVMFSIIFYGEQLTLRLAWGFLFIFIAVIISETK + LSFLKKDKKGLSQN" + gene complement(2060700..2062094) + /locus_tag="Ccel_1713" + CDS complement(2060700..2062094) + /locus_tag="Ccel_1713" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cth:Cthe_1846 periplasmic sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76064.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MSSSLRTKLSISYVMIALICILLISIFTTLFIHKHFEEYVKQNT + EHKNREIVTTLAGQYMDNGQWNSKVIETIGISSLENGIILRVRDIYGNIIWDARAHNN + GMCQRIIEHMSQNASKIPGGEKAVYTEVPYSINHNLKKIGTVEIGTYGDNYLNEHDIA + FINDLYKLLWAVGLFSLILSLLFGTVMSKRLVSPIARVINTAKSISKGFYSDRITEKS + NTREINQLTVSINDLAENMEKQETLRRRLTGDVAHELRTPLATLQSHMEAMIDGIWSA + DSERLKSCHEEIVRISKMVGDLERLAKYESENITLNMDTFDITKLAKRQVQNFETEFL + CKGLELELTGPSCLVYADKDKISQVFVNLLSNALKYTPKGGSVELHIQDNNNFIEISV + EDNGLGIPEEDLPYIFERFYRADKSRDRLTGGSGIGLTICKSIVLAHGGDIYAQSNPG + KGTKFIFTVPKLLK" + gene complement(2062124..2062828) + /locus_tag="Ccel_1714" + CDS complement(2062124..2062828) + /locus_tag="Ccel_1714" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cth:Cthe_1847 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76065.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MTDSARKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNG + YNEFNPDLIILDLMLPDISGEEICKRIRKISLVPIIMLTAKVSDDEVITGLDIGADDY + VLKPFSPKQLLARVAAVLRRTVKESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINL + TPNEYRILITMAGYPKKTFTREELISMALGDDFEGFDRTVDTHIKNLRQKIEDDPKAP + KYLVTVHGVGYRFAGE" + gene complement(2062931..2063164) + /locus_tag="Ccel_1715" + CDS complement(2062931..2063164) + /locus_tag="Ccel_1715" + /inference="protein motif:TFAM:TIGR00003" + /note="TIGRFAM: copper ion binding protein; + PFAM: Heavy metal transport/detoxification protein; + KEGG: cth:Cthe_0738 copper ion binding protein" + /codon_start=1 + /transl_table=11 + /product="copper ion binding protein" + /protein_id="ACL76066.1" + /db_xref="InterPro:IPR000428" + /db_xref="InterPro:IPR001802" + /db_xref="InterPro:IPR006121" + /db_xref="InterPro:IPR006122" + /translation="MAKEITDIIVEGMSCTHCVNSIKNAVGSLNGVQKVDVDLATKKV + TVEFDPEVVKGKQIKDAIEDQGYDVTMEHTNFV" + gene complement(2063296..2063775) + /locus_tag="Ccel_1716" + CDS complement(2063296..2063775) + /locus_tag="Ccel_1716" + /inference="similar to AA sequence:KEGG:Cthe_1850" + /note="KEGG: cth:Cthe_1850 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76067.1" + /translation="MKNSYKLTFTIIGAIIVVLAVILIVKFSGNDSQNTAVADIVIPK + SQITDKVTFYPLKTGKTNMEVLAVKASDGTIRTAFNTCQVCNGSPRAYYKQEGEVIVC + QNCGNRFSTDMIEQQRGGCNPIPIYSENRNEDAENITITKNFIENNKGLFTANWKTE" + gene 2063941..2065080 + /locus_tag="Ccel_1717" + CDS 2063941..2065080 + /locus_tag="Ccel_1717" + /inference="protein motif:TFAM:TIGR00350" + /note="TIGRFAM: cell envelope-related function + transcriptional attenuator, LytR/CpsA family; + PFAM: cell envelope-related transcriptional attenuator; + KEGG: cth:Cthe_0727 cell envelope-related transcriptional + attenuator" + /codon_start=1 + /transl_table=11 + /product="cell envelope-related transcriptional + attenuator" + /protein_id="ACL76068.1" + /db_xref="InterPro:IPR004474" + /translation="MKSARISFFSCLLSGIILFIIGTVLVFNTNTRPSPQQKHDTALP + SNNFKNSVDVTETHTNSGDPINFLVLIKEASGANTDSMIVANYEPVTNQISLLTIPRD + IKPTGKGTYKINSVFYLGTKKYANLSPSERKYKATEYTAQTISNLTNIPIDYYVYLEI + DTIKEIVDMLGGVYFDVPADLRYFDPSQDLNINLKKGYQLLDGDKAEQLLRFRKTPYN + INKASSDIRKYYDGSDLKRTEMQIRFVNELIKQKATILNLPKLIPVINYTFSNVITNI + SLSDTLNLVSGFTKASRPEMNTFQLCGVDRTINDIYYFIYNNKAEDLKTNAQYDTQDI + IDKYFQAKTGLFSPDPDKKYNFRSVLAENPSNSETETRSNGKDKP" + gene complement(2065134..2067038) + /locus_tag="Ccel_1718" + CDS complement(2065134..2067038) + /locus_tag="Ccel_1718" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: cpo:COPRO5265_1378 putative branched chain amino + acid ABC transporter substrate-binding protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL76069.1" + /db_xref="InterPro:IPR012854" + /translation="MKKLFVLFSVIICLIVSSVSVFAAEDLLDENTSTIITVSFKAGT + TSYTVNGKAVKAEASAVVQGKTFVPVKVITDALGASFTPDLKKKTAVIKYNDVEIKIT + DKKKEAVIAGKKTKMDAAPYIKNSSFMASVTFLADVFGADLKNSGGKVTFTKEIANPN + SIKDFGTIIKNTNKTKVGDSYYKWSMKLPRELTLSSRTFNGDNNFFISQDESYGIMIA + IKDKDKDATLEDEQQNLREEAEDSTLIDYGIYESNGIEYAEIVYKGSDVTFVKRVYMT + DTKEFVLLLLLENDKSYLDNKYQDLIDSFQFKFSKDGSTEDLSDVSATGYRKYQDTQL + KWSAKILPYWREYKDDNIHNEVQFDGLFGEIFSVKIYSLEKGETLDSITSSAIKNYEC + DYNPEIFKFERQESAVIGGVKCSKIYYKYNISDKPIYGCDIFFVGKNYKYVLCYELSE + ESYNDSSKRMMVEGMVNSFRFEQLDLKATGKLMDPSKITSSTKTRTFDDDYYSFKLPS + GWKTSQDNTDDFKQYYSSDGYLSLAITTVDMKLPSSDFFAGLDQYFNSLVNKNLKLES + KTAINEKGTFGYKYVLNLNTNDTQYRQEIYVLTKGNQAIQVTLTANSFYYGSKNKEIV + SSIWNSFTLK" + gene complement(2067082..2068206) + /locus_tag="Ccel_1719" + CDS complement(2067082..2068206) + /locus_tag="Ccel_1719" + /inference="protein motif:PFAM:PF00089" + /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; + SMART: PDZ/DHR/GLGF domain protein; + KEGG: csc:Csac_2307 2-alkenal reductase" + /codon_start=1 + /transl_table=11 + /product="peptidase S1 and S6 chymotrypsin/Hap" + /protein_id="ACL76070.1" + /db_xref="InterPro:IPR001254" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR001940" + /translation="MKKRYLIFLAAIMLLLSFNFIVSGATQLKVSINGFQTDIGTATV + NNKVYVDAEAFANQLGLSASKTSNSINISTKNDDIIPNIIKSISPSVVGIIGNIDSGN + STADGVVLGTGVIIKSGGDILTNAHVVENMSRIIVVLNDGTGYEARIKYIDKPSDLAV + IKIDRIGLTAATLGKMQDIVIGKTAIAIGTPMSFQNRNSASVGVISGLNRSVDGFYQY + KLIQTDAAINPGNSGGPLLTTKGEVIGINSMTTVNAQGLSYAIPIDTVQYVLNHFYKY + GKVKRVTLGADFEEDYVALYGLPSKNGLKITSIKKGSCSEKYGLKKDDFIYSINGVYV + NTLVDLNEAYKSVLPGNKVKVGVRRNGKTQSINVVMDELK" + gene complement(2068301..2068693) + /locus_tag="Ccel_1720" + CDS complement(2068301..2068693) + /locus_tag="Ccel_1720" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mgi:Mflv_2011 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76071.1" + /translation="MTNNLKWKKAAVCIFPLAIIIIAYFLRNQLIYLGTLFPSCPSYT + YLNIYCPGCGNTRSVQHLLKGDILGSIRFNPIPLLGIILSILAYIELITYVFGRHRKI + FPRNRTFWWTLVVISSVYFVVRNFIRPF" + gene complement(2068717..2069520) + /locus_tag="Ccel_1721" + CDS complement(2068717..2069520) + /locus_tag="Ccel_1721" + /inference="protein motif:PFAM:PF00795" + /note="PFAM: Nitrilase/cyanide hydratase and + apolipoprotein N-acyltransferase; + KEGG: cdf:CD0487 putative carbon-nitrogen hydrolase" + /codon_start=1 + /transl_table=11 + /product="Nitrilase/cyanide hydratase and apolipoprotein + N-acyltransferase" + /protein_id="ACL76072.1" + /db_xref="InterPro:IPR003010" + /translation="MNSKIKLGLCQMAVTDSKNENVKKAVFMLEECCKRGADIAVLPE + MFNCPYDTKLFPLYAENFENSKTLSVISDSAKYNNMYIVAGTIPEFSNGCIYNTSIMF + DRQGKIIAKHRKIHLFDVNIKDGVSFRESDVLAAGRSVTVAQTEFGRIGLAICFDMRF + TELYSQMSEAGAKIIITPASFNMTTGPVHWELLVRARALDNQIFHAAVSSARNTSDTY + ISYGNSMVCDPWGRVISKADEKEGILIADIDLNMVNSVRSQIPVNKIID" + gene complement(2069660..2071018) + /locus_tag="Ccel_1722" + CDS complement(2069660..2071018) + /locus_tag="Ccel_1722" + /inference="protein motif:PFAM:PF05167" + /note="PFAM: protein of unknown function DUF711; + KEGG: cth:Cthe_0410 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF711" + /protein_id="ACL76073.1" + /db_xref="InterPro:IPR007841" + /translation="MLGPFEVLETIDMIQKENLDIRTITMGISLRDCCHPDIDISCKK + IYDKITRYAEKLVVTGENIEREFGIPIINKRISVTPIALIAESSESDEYVKFAEAMDK + AAQTVGVDFIGGFSSLVHKGYTVGDKRLIQSIPEALSRTKLVCSSVNVASTKAGINMD + AVAEMGRIIKKCAELTADSGALACAKLVVFANAVEDNPFMAGAFHGIGEPECVINVGV + SGPGVVKCALEKVKGADFGTVSETIKKTAFKITRMGQLVAQEASRRLNVPFGIVDLSL + APTPAIGDSVAYILEEMGLEKCGTHGTTAALALLNDAVKKGGVMASSYVGGLSGAFIP + VSEDAGMIEAAMSGALSLEKLEAMTCVCSVGLDMIVVPGDTSAETISAIIADEAAIGV + VNTKTTAVRIIPAPGKKVGDKVEFGGLLGSGPVMKVNPFSSSEFIKRGGRIPAPMHSL + KN" + gene complement(2071030..2071299) + /locus_tag="Ccel_1723" + CDS complement(2071030..2071299) + /locus_tag="Ccel_1723" + /inference="protein motif:PFAM:PF01842" + /note="PFAM: amino acid-binding ACT domain protein; + KEGG: cth:Cthe_0409 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ACT domain-containing protein" + /protein_id="ACL76074.1" + /db_xref="InterPro:IPR002912" + /translation="MRAVITVIGKDKVGIISGVSNILAESNVNILDITQTILQDVFTM + IMLVDISHCNIPFHDLSDKLESKGVEIGLKIQIQHEDIFNSMHRI" + gene 2071516..2072901 + /locus_tag="Ccel_1724" + CDS 2071516..2072901 + /locus_tag="Ccel_1724" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: aoe:Clos_0640 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76075.1" + /db_xref="InterPro:IPR007197" + /translation="MNLHEKLGILADAAKYDVSCSSSGGTRKNKNGVGDSHACGICHT + WADDGRCVSLLKILLSNECIYDCVYCINRSSNDVPRASFTAEEVIELTMNFYRRNYIE + GLFLSSAVLKNPSHTMELMLEIVKKLRTEHGFFGYIHIKAIPGADERLINEAGMYVDR + MSVNIELPSDKGLEVLAPQKPKRALLKPMHQINSKIIENKENRRLFKKGDSFVPAGQS + TQLIVGATPDKDLSILKLSEALYDNFNLKRVYYSAFIPTVTDPRLPALIKPPLLREHR + LYQADWLLRFYGFDADELLSKANPSFNPELDPKADWALRNLHLFPVEVNTAEYEMLLR + VPGIGVKSAQRIITARRVGRLNFDNLKKIGVILKRAGHFLTCVGKTYDSYSSNEAIVK + ESLISAKLQPKSKKSVPGQLSLFSFVNETETHENLSELFLIDSPSNNGQWLSYYNQPQ + DGRLLLSDIHL" + gene 2072885..2073625 + /locus_tag="Ccel_1725" + CDS 2072885..2073625 + /locus_tag="Ccel_1725" + /inference="similar to AA sequence:KEGG:Dred_1283" + /note="KEGG: drm:Dred_1283 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76076.1" + /translation="MIYIYDGTWDCFLTAIHHYYYDKQDVSNIESVLCYEPNLIDEYR + TITTDVVKAKAVEEAMLHKISSESLENLQKCFFSEIEGREMWILKYIRLGFKIGSRID + SMLGDKTVLDVLIPARKVGIECHRMLGLLRFELLEGSIYYAKIQPDHNIISFISPHFK + NRFADQNWIIHDTKRKIASLYNTKKMLLSYMDLSNIPELHSEELKFQALWKNYYKHIA + IKNRINPKLQKNFMPKRYWKNLTEKKPD" + gene complement(2073796..2075193) + /locus_tag="Ccel_1726" + CDS complement(2073796..2075193) + /locus_tag="Ccel_1726" + /inference="protein motif:TFAM:TIGR01087" + /note="TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate + ligase; + PFAM: cytoplasmic peptidoglycan synthetase domain protein; + Mur ligase middle domain protein; + KEGG: cth:Cthe_1041 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylmuramoylalanine/D-glutamate ligase" + /protein_id="ACL76077.1" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR005762" + /db_xref="InterPro:IPR013221" + /translation="MNNKLEQFKKDVKNKRVAVMGIGVSNIPLIKYLVSFGVDVTAFD + KSTEEKLTDAFNELKGLPVKYSLGPDYLSRLNGFDMIFRTPGMRPDLPELVEAVANGA + ELTSEMEVFLKLCPAQVFAVTGSDGKTTTTTLIYKTLSEEGFKCWLGGNIGTPLLSKI + DDVAETDKVILELSSFQLMTIKDCPSVAVITNISPNHLDVHKSLQEYIDAKKNIFINQ + NENDKLVLNFDNEITKSFNYEARGEYVYFSRLNNINEGVVYQNGRIIVKKENSITEII + EGDKIKIPGVHNIENYMAATAATIDYVKPETIARIASSFNGVEHRIELVRELNGVKFY + NSSIDSSPSRTIAALKTFKDKVILIAGGKDKGIPYDSMGEIITEKVKCLLLIGATASR + IEEAYKNYLQQRDLENDIKIIHCDTYQEVVQKAHAEAEQGDCIILSPASTSFDMFKNF + EHRGNVFKELVNNLK" + gene 2075290..2075376 + /locus_tag="Ccel_R0041" + /note="tRNA-Leu1" + tRNA 2075290..2075376 + /locus_tag="Ccel_R0041" + /product="tRNA-Leu" + gene complement(2075423..2076220) + /locus_tag="Ccel_1727" + CDS complement(2075423..2076220) + /locus_tag="Ccel_1727" + /inference="protein motif:PFAM:PF01739" + /note="PFAM: MCP methyltransferase CheR-type; + KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type" + /codon_start=1 + /transl_table=11 + /product="MCP methyltransferase, CheR-type" + /protein_id="ACL76078.1" + /db_xref="InterPro:IPR000780" + /translation="MDYEGFKEEILKMTKINLTLYKEKQMKRRIDALIRKNNYSTYKD + YVQALKVNKELFKEFINYLTINVSEFYRNPDQWSVLEKEIFPLLLSKKKKLTIWSAAC + STGDEPYTLVMVLNKLMPLSSIKILATDIDMGAIEKAKTGIYNAKSVENLPKEYINKY + FTILGESYKIKDEVKNCVEFKQHNLLRDPYPANIDLIVCRNVLIYFTEEAKTDIYKKF + NMSLNHQGILFVGSTEQLIMANKYNFKSLKTFFYIKESDNFNYQDLK" + gene complement(2076364..2078382) + /locus_tag="Ccel_1728" + CDS complement(2076364..2078382) + /locus_tag="Ccel_1728" + /inference="protein motif:TFAM:TIGR00216" + /note="TIGRFAM: hydroxymethylbutenyl pyrophosphate + reductase; + PFAM: RNA binding S1 domain protein; LytB protein; + KEGG: cth:Cthe_0714 4-hydroxy-3-methylbut-2-enyl + diphosphate reductase" + /codon_start=1 + /transl_table=11 + /product="hydroxymethylbutenyl pyrophosphate reductase" + /protein_id="ACL76079.1" + /db_xref="InterPro:IPR000110" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR003451" + /translation="MELVIANSAGFCFGVNNAVKIVFELATKSDHKIYTLGPIIHNDQ + VVQKLTKHGVTTIDNPEEAVAPAKVVIRAHGVGPKIIEGLKNRGLEVVDASCRYVEKI + HSLVNKKYKEGYQIIIAGDKTHPEIIGINGWCDNSAFIIEDEYNVDKLPDIKKKICVV + AQTTFIREKWEKIILRLNKRFENVLKFDTICNATDKRQTEAEKISKIVDMVLVIGGNN + SSNTNKLYQICKTNCDNTFKIQTADDIPPVDIKKIKKIGITAGASTPDWVIKEVIHKM + SELDRQDMEMSFADAFESSLVTLTTGQITKGKIIGYNNNEVFIDMGYKSDGIIPMQEF + SDDPDFNPEKSLKVGDEIDVFVVRVNDGEGNVLLSKKRVDAVKGLEVIERAYENKQPV + KVKITEKVNGGVIGNASGVRVFIPASQISDRFVKDLSEFVKQVLQVEIIELNKQKRKV + VGSARILIEKNKEAASSLIWDSIEIGKTYKGQVKSLMDFGAFVDIGGVDGLVHLSELS + WNKIRHPSEVVKVGDEIIVSVLDFDKEKKRISLGYKKQSDNPWIKAAEKYQVGNVVSG + KVVRLVPFGAFVELEEGIDGLVHISQISSVRLGKPGDALKVGQQVDAKIIEFDTESKK + ISLSIKEVNPIDPEGAKKEESIPAAEVEELPNEHVEEMTNTIGESIKE" + gene complement(2078400..2079071) + /locus_tag="Ccel_1729" + CDS complement(2078400..2079071) + /locus_tag="Ccel_1729" + /inference="protein motif:TFAM:TIGR00017" + /note="TIGRFAM: cytidylate kinase; + PFAM: cytidylate kinase region; + KEGG: cth:Cthe_0712 cytidylate kinase" + /codon_start=1 + /transl_table=11 + /product="cytidylate kinase" + /protein_id="ACL76080.1" + /db_xref="InterPro:IPR003136" + /db_xref="InterPro:IPR011994" + /translation="MPKSIAIDGPAGAGKSTIAKKVSAELGFIYLDTGAMYRAVALKA + IETGINTKSREDLINIIDNINITITHDDNVQKIFLDGRDVSEHIRTAQVSAGAADVAA + IKEVRLKMVELQRRIAGEKDVVMDGRDIGSYVLPQANLKVFLTANIDERAKRRYEELV + LKGQEVYLEEVREDMMNRDHNDMSRAFAPLKKVPDAVEIDSTSMTIEEVAERILYFYN + NYANI" + gene complement(2079114..2079476) + /locus_tag="Ccel_1730" + CDS complement(2079114..2079476) + /locus_tag="Ccel_1730" + /inference="protein motif:TFAM:TIGR01796" + /note="TIGRFAM: chorismate mutase; + PFAM: Chorismate mutase of the AroH class; + KEGG: cth:Cthe_0711 chorismate mutase" + /codon_start=1 + /transl_table=11 + /product="chorismate mutase" + /protein_id="ACL76081.1" + /db_xref="InterPro:IPR008243" + /translation="MAVRAVRGAITVPENTKESIWEGTKELLVEIVNRNSLKNADIIS + AIFTVTHDLSAAFPAVAARQIGWNDIPLMCTNEIDVPGSLEKCVRVLIHINTEKTNAE + INHVYLNGAAVLRPDLVK" + gene complement(2079513..2079932) + /locus_tag="Ccel_1731" + CDS complement(2079513..2079932) + /locus_tag="Ccel_1731" + /inference="similar to AA sequence:KEGG:Cthe_0710" + /note="KEGG: cth:Cthe_0710 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76082.1" + /translation="MANEGFGSKEIASAAIRISLTNDRTTEKKLQAEFQQIGISTAAV + DYGGEFISSVMKIVERAVVSSKREGVISESHAEQGAVAGATREAISQIMPKAIGLNVG + GKIGIARYRDHVSVAVFFGIGLLNLNEVSIGLGHRVV" + gene complement(2080123..2080608) + /locus_tag="Ccel_1732" + CDS complement(2080123..2080608) + /locus_tag="Ccel_1732" + /inference="similar to AA sequence:KEGG:Cthe_0709" + /note="KEGG: cth:Cthe_0709 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76083.1" + /translation="MKISLKKNNDKLNNTDKTASLEKILFWTCIFFFVALISVQVALS + VPSVRLRLNIMDKTMGIPLGNDEYLYGRGKVTLLLLSEEPDPQVKILVNGDEVAVFDK + IKIPVNVNDGDVVEVDGSESQTSHIVKVENASLNINGKCLNAIVTVKSNLKKLVKIQF + I" + gene complement(2080697..2081923) + /locus_tag="Ccel_1733" + CDS complement(2080697..2081923) + /locus_tag="Ccel_1733" + /inference="protein motif:PFAM:PF03486" + /note="PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; glucose-inhibited division protein A; + fumarate reductase/succinate dehydrogenase flavoprotein + domain protein; HI0933 family protein; FAD dependent + oxidoreductase; + KEGG: cth:Cthe_0708 FAD dependent oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="HI0933 family protein" + /protein_id="ACL76084.1" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR002218" + /db_xref="InterPro:IPR003953" + /db_xref="InterPro:IPR004792" + /db_xref="InterPro:IPR006076" + /db_xref="InterPro:IPR013027" + /translation="MGKVIVIGGGPAGMMAAGIAAGRGRDVILLEKNNRLGKKLLISG + KGRCNITNDTDVEGLIENTPGNGNFLYSAFYTFSNQDLIDFFNQKGLSTKVERGGRVF + PESDSSRDVLNTLMSFLNSNGVRINTDAAVTEILSQENKVTGVRLSDGSTLEAESVIL + AVGGMSYPGTGSTGDGYEMARKLGHTVTPLKPSLVPLITREEWIHDLQGLSLKNVAVS + FKNNNGKVIYDDFGEMIFTHFGVSGPVILSASRHLLSYDFRNVDLILDLKPALTWEKL + DERVQRDFDKYSRKQFKNSLDDLLPQKFIPVIIRLSEINPEKPVHQITKEERKKLVTL + LKYLKITIVGARPIKEAIVTAGGIKTSEINPSTMESKKIGGLFMAGEVIDVDAYTGGF + NLTIAFSTGYLAGLNC" + gene complement(2081944..2082837) + /locus_tag="Ccel_1734" + CDS complement(2081944..2082837) + /locus_tag="Ccel_1734" + /inference="protein motif:PFAM:PF01380" + /note="PFAM: helix-turn-helix protein RpiR; sugar + isomerase (SIS); + KEGG: cth:Cthe_0706 RpiR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, RpiR family" + /protein_id="ACL76085.1" + /db_xref="InterPro:IPR000281" + /db_xref="InterPro:IPR001347" + /translation="MKNSLKNIDLLSLIQQKYDNFSKGQKLIANYISNHYDKAAYVTA + AKLGEIVGVSESTVVRFAIELGFDGYPKLQKVLQELIKSKLTSVQRIEVSSNRLNEDN + ILKSVLQSDMDKIKITLEQIDTNKFNEIVETILESKRIFILGVRSSAPLASFLGFYFN + LIFDNIRLVHTTSVSEMFEQIIKAQPGDVVIGISYPRYSKRTIKALQFAKDQGVKTIA + ITDSAESPVAQAANQYLLARSDMASFVDSLVAPLSLLNALIVEIGMRRKNDVYNTFEK + LEKIWDEYDVYEKDDYRDEKL" + gene 2083020..2083664 + /locus_tag="Ccel_1735" + CDS 2083020..2083664 + /locus_tag="Ccel_1735" + /inference="similar to AA sequence:KEGG:Cthe_0704" + /note="KEGG: cth:Cthe_0704 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76086.1" + /translation="MIQIDDAGSGSFVGGTCIGFYRPETNEYYFDIIPVELYNTDNFK + KKLYLEDVVEIAKKAFIALRVSKSESIEICRGYMFERLKSWLTDEGFCWYVTQITGRI + QEVVEKNFELYAINLGLPNDYIKFTRFPFHFHKLLRWVLSDYENRINLCKVGWKSWQN + LKNVTPTLSFTQIHQSNLICLKCGKHIKKGSDVAVLEFYSNKQNFVYLHRGCKT" + gene complement(2083736..2085268) + /locus_tag="Ccel_1736" + CDS complement(2083736..2085268) + /locus_tag="Ccel_1736" + /inference="protein motif:PFAM:PF02436" + /note="PFAM: pyruvate carboxyltransferase; Conserved + carboxylase region; + KEGG: cth:Cthe_0701 oxaloacetate decarboxylase" + /codon_start=1 + /transl_table=11 + /product="Conserved carboxylase region" + /protein_id="ACL76087.1" + /db_xref="InterPro:IPR000891" + /db_xref="InterPro:IPR003379" + /translation="MPGVRITETVLRDAHQSLIATRMKTEEMLPIVEKLDNIGYHSLE + AWGGATFDSCMRFLNEDPWMRLRKIKDVAKKTPLQMLLRGQNLLGYKHYADDIVEYFV + QKAVANGMDIMRIFDALNDARNIETAIKACKKEGGHAQGCICYTISPVHNLELFVKDA + KQLESMGADSICIKDMAGLLVPYQAYELVKALKESVKIPIQLHTHYTSGVASMTYLKA + IEAGIDIVDCAISPMSMGTSQPPTEPLVATLKGTDFDTGLDLEKLSEIADYFRPLKEK + YIESGLLDVKVMGVDVNTLIYQVPGGMLSNLVSQLKQSNALDKYEEVLKEVPRVRADF + GYPPLVTPSSQIVGTQAVLNVLTGERYKMVPKESKGVVKGEYGKTPAPISDEIKAKIL + GDEKPITCRPADLIEPELEKIREAVKDYIEQDEDVLSYAMLPQVAEKFFKQRIEDRNK + ATAPASDEIKPEVVAAISAVVNEMGERDGTQYRIGNISKLNQNQNRWSLYGMLDRFRT + KI" + gene complement(2085300..2085668) + /locus_tag="Ccel_1737" + CDS complement(2085300..2085668) + /locus_tag="Ccel_1737" + /inference="protein motif:PFAM:PF00364" + /note="PFAM: biotin/lipoyl attachment domain-containing + protein; + KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein" + /codon_start=1 + /transl_table=11 + /product="biotin/lipoyl attachment domain-containing + protein" + /protein_id="ACL76088.1" + /db_xref="InterPro:IPR000089" + /db_xref="InterPro:IPR001249" + /db_xref="InterPro:IPR001882" + /translation="MSKYIIKVNGTPYEVEVEEVGGGRPISAAPKLRATKPGHTSAAK + AAQPQAGKAGDVAAPMPGTVLKVKVAIGDEVKKGQVLLILEAMKMENEIVAPADGKVT + ALNVEAGKSVTAGELMVSIA" + gene complement(2085707..2087257) + /locus_tag="Ccel_1738" + CDS complement(2085707..2087257) + /locus_tag="Ccel_1738" + /inference="protein motif:PFAM:PF01039" + /note="PFAM: carboxyl transferase; + KEGG: cth:Cthe_0699 carboxyl transferase" + /codon_start=1 + /transl_table=11 + /product="carboxyl transferase" + /protein_id="ACL76089.1" + /db_xref="InterPro:IPR000022" + /db_xref="InterPro:IPR011762" + /db_xref="InterPro:IPR011763" + /translation="MSQIEKIQNLKNMKKTIAKGGGEEKIAKRHADGKLSARERIHLL + FDENSFVEVDAFIESRCFDFGMQKKKLPGDGVVTGYGTVNGRKVFVSSQDFTVIGGSL + GEMHAKKITKVMDMALKMGAPFIAINDSGGARIEEGLDALSGYGDIFYRNTLASGVIP + QISVIMGPCAGGAVYSPAITDFIFMVEKTSQMFITGPQVIKSVTGEDVSVENLGGADV + HTATSGVAHFKSSSEEECIEDIKRLLSFIPDNNVSDTMYYGVSDAADRLAESLNSIIP + EESNKPYDMFDVIAEVVDDGDFFEVQSYFSQNIIIGFARMNGRSVGIVANQPKIMAGS + LDMNAADKAARFVRFCDAFNIPVVSLTDVPAFLPGVAQEHNGIIRHGAKLLYAFSEAT + VPKINVILRKAYGGAYIAMNSKTIGADMVLAWPSAEIAVMGPDGAANIIFKKDIAASE + DPAETRKEKIAEYRDKFSNPYVAASRGYIDDVIEPSETRVKIITALEMLDTKRENRPS + KKHGNIPL" + gene 2087588..2088346 + /locus_tag="Ccel_1739" + CDS 2087588..2088346 + /locus_tag="Ccel_1739" + /inference="protein motif:TFAM:TIGR02895" + /note="TIGRFAM: RNA polymerase sigma-I factor; + PFAM: sigma-70 region 2 domain protein; + KEGG: cth:Cthe_0403 putative RNA polymerase sigma factor + SigI" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, SigI" + /protein_id="ACL76090.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR014244" + /translation="MTILNLFGNSRKKPQPIEEAVVRIKNGDTHLKEGLINDYKPFIL + KVISSVTGKFVDTKNSDELSIGLMAFNEAIESFNTEKNAGFLSFAEMVIKRRIVDHMR + KDYKNRKVYPFTYFQDSDHKDKNTIENKYMVVDANTYFDNVELKEEIDLFKTRLKGFG + ISLSDLVGNVPKHTDSKKLAISIARVLSENKTLSELLTKKKTIPMSGLLKIVKVNRKT + IERNRKFIIAVFLIINSKLEVLQEYVCNIEKGGK" + gene 2088348..2089589 + /locus_tag="Ccel_1740" + CDS 2088348..2089589 + /locus_tag="Ccel_1740" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0316 PA14" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76091.1" + /translation="MGNNTGTILEIKGNKAIVMTNTCDFIAITRMPEMFVGQQVDLNN + SAIKSKSNPLKYFAIAGMFVLILCSVLIYQLVKPSAVFAYVDVDINPSLELLIDKKAN + VIEVKTLNSDADALVKDIRLVNKSLTNAVKIIIKESQNKGFIRPDTKNAVLISASINP + GKSISSAVSSEKILDVIVSDLQKTDFSIGAVSIKAEVVKVDPIERSEAVKNNISMGRY + KLFEEITESDENIDIEKAKTEGLSKIIEEYETKEQEKTIASVDKDNSYKPVQDNKEIL + DKPKNSTTKDNPKVADNKKPENNNSQKYSNGNSNSSKSSAVKPNKAEDQFKASRSNSE + NNSSNNRDQSKNTNKKSSDEKKTLDQGSKPITTDDGTKSLNNKNNNKNNDEKPKNHPA + KENKQENGNNNQQKSKEKNKK" + gene complement(2089603..2090169) + /locus_tag="Ccel_1741" + CDS complement(2089603..2090169) + /locus_tag="Ccel_1741" + /inference="protein motif:PFAM:PF06962" + /note="PFAM: putative rRNA methylase; + KEGG: cth:Cthe_0696 putative rRNA methylase" + /codon_start=1 + /transl_table=11 + /product="putative rRNA methylase" + /protein_id="ACL76092.1" + /db_xref="InterPro:IPR010719" + /translation="MCILKNSLYQSHEIVSRVVCNGDIVVDATAGNGHDTAFLAKLVG + AGGLVYSFDIQESALNTTRNKLEAENLLNRVNLIHDGHQNMMKYVNKPIKAAMFNLGY + LPGGDHNIGTRGGTTIEAIKSAMELVVPHGIISIVVYYGGDSGFDEKNEVINYIKTID + CKKFSVMQTEFVNQINCPPIFVCMEKNA" + gene 2090314..2090799 + /locus_tag="Ccel_1742" + CDS 2090314..2090799 + /locus_tag="Ccel_1742" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bsu:BSU36610 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76093.1" + /translation="MDQYNEPDNALQDNPPSAATNTAVLNNNTYHHARPDYQFQQQQI + PQPGLHNSIINSLSGWMKFLGIYTIVVGALTCLGIITAAIGIPLIFSGISLTKASKAI + KEYIGFNSPNVLYNVFFYLNKYFKIQGILVIVALALSVLYIIIILVVLVLGAYNFMYN + Y" + gene complement(2090796..2091503) + /locus_tag="Ccel_1743" + CDS complement(2090796..2091503) + /locus_tag="Ccel_1743" + /inference="protein motif:PFAM:PF00849" + /note="PFAM: RNA-binding S4 domain protein; pseudouridine + synthase; + KEGG: cth:Cthe_0693 ribosomal large subunit pseudouridine + synthase B" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase" + /protein_id="ACL76094.1" + /db_xref="InterPro:IPR000748" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR006145" + /translation="MLGIRLQKFIAHAGVASRRTAEEMIKQGRVAVNNTVVQDMGFTV + SNDDFVTVDGKPVKIEEEKVYIMLHKPVGYVSTSQDQFGRPTVVDLVKDAGKRLYPVG + RLDYDTSGLILLTNDGDFTYRLTHPKHEINKVYEAVISGFPEKNEIKSFESGLKIENY + QTSPAEFVVLEKQGINTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALDNL + PVGKWRHLSLRELKMLY" + gene complement(2091675..2092133) + /locus_tag="Ccel_1744" + CDS complement(2091675..2092133) + /locus_tag="Ccel_1744" + /inference="protein motif:TFAM:TIGR02874" + /note="TIGRFAM: sporulation protein YtfJ; + PFAM: Sporulation protein YtfJ; + KEGG: cth:Cthe_0691 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YtfJ" + /protein_id="ACL76095.1" + /db_xref="InterPro:IPR014229" + /translation="MSSHPIEGLMTTAMQSIKEMVDVNTIVGDAVQAPDGTVIIPISK + VSFGFAAGGGDYGEDSDSNNSREDKSDGKFPFAGGSGAGVSINPVAFMVCGQNHVKLL + PVNVNSSVEKILDMVPELVQKANEMINEKMSKSKSDNCKQKKEENEKGKE" + gene complement(2092069..2092698) + /locus_tag="Ccel_1745" + CDS complement(2092069..2092698) + /locus_tag="Ccel_1745" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0690 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76096.1" + /translation="MVIFLIVVIIICIVITTILNIRMTLGFTAKLQNKDCSVFITIYS + FRNKVIKNLMIYPVPKKNKKPKRKTVNGKRDLKQLRRSLQILRRLFRRSLIIKDFKLH + VQQGTGDAFNTAVLYGFIWSAIGMIENLIFTQYKIKNKEIKVDADFNGKYIKINLDCI + FSLKIVNIITVGKVIAILYLKNRKGGGAGVKSSNRRSHDYSNAKYQGNG" + gene complement(2092744..2093316) + /locus_tag="Ccel_1746" + CDS complement(2092744..2093316) + /locus_tag="Ccel_1746" + /inference="protein motif:TFAM:TIGR00281" + /note="TIGRFAM: segregation and condensation protein B; + PFAM: chromosome segregation and condensation protein + ScpB; + KEGG: cth:Cthe_0688 condensin subunit ScpB" + /codon_start=1 + /transl_table=11 + /product="chromosome segregation and condensation protein, + ScpB" + /protein_id="ACL76097.1" + /db_xref="InterPro:IPR005234" + /translation="MEISTIECVIESLIFSYGDPLPLDKICEILELDKKTARSILKNM + MDSYNNSNRGIIIREINEKYQMCSKPEYFDYVSKLYQIRQKQALSQAAYEVLAIIAYN + QPITRAKIEQIRGVNSDSAVTRLTERNLIKEAGKLDVPGRPRLYETTDEFLRCFGFKS + IRDLPLLDIDDLNELNLQELVEEFDEEGNK" + gene complement(2093341..2094144) + /locus_tag="Ccel_1747" + CDS complement(2093341..2094144) + /locus_tag="Ccel_1747" + /inference="protein motif:PFAM:PF02616" + /note="PFAM: chromosome segregation and condensation + protein ScpA; + KEGG: cth:Cthe_0687 condensin subunit ScpA" + /codon_start=1 + /transl_table=11 + /product="chromosome segregation and condensation protein + ScpA" + /protein_id="ACL76098.1" + /db_xref="InterPro:IPR003768" + /translation="MESSLTNACTLKLDNFEGPFDLLFHLFEKNQVDIYDIPISIITD + QYLDYLYAMQQLDLEVASEFLIMAATLLHIKSRTLLPSKKEEIQEEKDPREELVRRLV + EYRRYKEFTQELKEMEKKWGRVTFRLPETLDLPVREEIMEIDPQLLRQQYLALLDRNK + KKMNLGAKNITKLVEHEKVSLRSKMREVVKHLIYKVSFKFSELFSFKTKSKTEVVTGF + MAILELAKMKKVKIVQNQQFSDIHVISNTQNEKEDNELFNEIDENIREF" + gene 2094325..2094966 + /locus_tag="Ccel_1748" + CDS 2094325..2094966 + /locus_tag="Ccel_1748" + /inference="protein motif:PFAM:PF02163" + /note="PFAM: peptidase M50; + KEGG: ckl:CKL_2813 protease" + /codon_start=1 + /transl_table=11 + /product="peptidase M50" + /protein_id="ACL76099.1" + /db_xref="InterPro:IPR008915" + /translation="MLFSREYIMYKLMIIPGILLGFVLHEFAHAITADKLGDPTPRAQ + GRITLDPRSHIDILGFVMILLVGFGWAKPVMTNPRHYKKPRRDDILVSLAGPFMNLLV + AIGFLLLLKLVAVTGFLSSNQVVLGNVADLLQFSAKINVVLFVLNLLPIPFFDGYHVI + ANVFNTWKYRFFTILEQYSTVIFILLALSGAFGMIIGIPASFIFNSLFKAIIF" + gene complement(2094982..2096208) + /locus_tag="Ccel_1749" + CDS complement(2094982..2096208) + /locus_tag="Ccel_1749" + /inference="protein motif:PFAM:PF00768" + /note="PFAM: peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1; Penicillin-binding protein 5 domain + protein; + KEGG: cth:Cthe_0679 serine-type D-Ala-D-Ala + carboxypeptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase S11 D-alanyl-D-alanine + carboxypeptidase 1" + /protein_id="ACL76100.1" + /db_xref="InterPro:IPR001967" + /db_xref="InterPro:IPR012907" + /translation="MKRNSVLAFSLIIAIVTAMFPAVVSADTNEAAVEASAKYDDVAV + TKLETKTNVLDLRAKSAVLMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAG + RFTFDEKVSVSEYSAGMGGSQAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGS + EETFVTDMNNKAQALGMKDTKFMDCTGLNDDGYSTAHDVALMSRELVIKHPKVLQFTG + KWHDTFRNGTFDLYNTNKLVKFYANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLG + EPDSNTRFAESRKLLDYGFANYEVINLDKKGNVVGNIPVKKGNKLSVSAVYGTDTSIM + VSKGQKGKVEKEVALVPGLSAPVEINQKVGEVIYKIDGKEAGRFELVAREKIEKISYG + RIFSKLVVRWFSLGRA" + gene complement(2096302..2097624) + /locus_tag="Ccel_1750" + CDS complement(2096302..2097624) + /locus_tag="Ccel_1750" + /inference="protein motif:TFAM:TIGR02644" + /note="TIGRFAM: pyrimidine-nucleoside phosphorylase; + PFAM: glycosyl transferase family 3; Pyrimidine nucleoside + phosphorylase domain; Glycosyl transferase, family 3-like; + KEGG: aoe:Clos_1589 pyrimidine-nucleoside phosphorylase" + /codon_start=1 + /transl_table=11 + /product="pyrimidine-nucleoside phosphorylase" + /protein_id="ACL76101.1" + /db_xref="InterPro:IPR000053" + /db_xref="InterPro:IPR000312" + /db_xref="InterPro:IPR013102" + /db_xref="InterPro:IPR017459" + /db_xref="InterPro:IPR017872" + /translation="MRMYEIIEKKRDGFELSLDEINFFITEYCNNSIPDYQAAALLMA + IFLRGMNERETADLTNVMANSGDRIDLSSIAGIKVDKHSTGGVGDKTTLILAPIVAAC + GIPVAKMSGRGLGHTGGTIDKLESIPGFNTSLSTEQFIDNVKSIGISIAGQTGNLAPA + DKKLYALRDVTATVNNTSLIASSIMSKKLASGADRIVLDVKTGSGAFMKTFEDSVELA + KTMVKIGKNTGRKTIAVVTDMDIPLGFAVGNSLEIIEVIDTLKSKGPEDLKVVSFELA + ARMLELSGIGNIDECRARVSNAVESGKALSKFAELIENQGGNKDVINDSTLFPQPAYK + LDFICEKPGYIQFMKTDQIGIASLVLGAGRETKESKIDYSAGIMFNKKTGDRVEAGES + VAVLYTNREETLLHAVSLLKEAVVISELPHERKPLILAYIDSEGNIKK" + gene complement(2097733..2098617) + /locus_tag="Ccel_1751" + CDS complement(2097733..2098617) + /locus_tag="Ccel_1751" + /inference="protein motif:TFAM:TIGR02225" + /note="TIGRFAM: tyrosine recombinase XerD; + PFAM: integrase family protein; integrase domain protein + SAM domain protein; + KEGG: cth:Cthe_0676 tyrosine recombinase XerD subunit" + /codon_start=1 + /transl_table=11 + /product="tyrosine recombinase XerD" + /protein_id="ACL76102.1" + /db_xref="InterPro:IPR002104" + /db_xref="InterPro:IPR004107" + /db_xref="InterPro:IPR011932" + /translation="MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTN + IVNTNKTTVIAYLLHLQKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPK + VEKKLPQILSTQEVELLLDQPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINF + DLGLIKCNKGTRERTIPIGSISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQ + GFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYA + QIAKNKIKDVYKKTHPRA" + gene complement(2098790..2099425) + /locus_tag="Ccel_1752" + CDS complement(2098790..2099425) + /locus_tag="Ccel_1752" + /inference="protein motif:TFAM:TIGR02831" + /note="TIGRFAM: stage II sporulation protein M; + PFAM: protein of unknown function DUF95 transmembrane; + KEGG: cth:Cthe_0675 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="stage II sporulation protein M" + /protein_id="ACL76103.1" + /db_xref="InterPro:IPR002798" + /db_xref="InterPro:IPR014196" + /translation="MIHKTASVVKEHIRDNKYTYLSLFIFYIIGIVAGSLTVNELDYN + QKTEMTTFFNDFLKLLNNNNVNGISLLKISLLDSIRVIILFWLLGVTVIGLPVYYLTI + GIRGFSTGFSSGIIMGVLGEKGVLVSIFCFLPKEILTIPFIIALGVNGIRLTKGIVKN + WIRKPVKKEDTLKFKFLPYCFVTLFFSLFILVMTILDAFIAPFTLRLLTFL" + gene complement(2099526..2100068) + /locus_tag="Ccel_1753" + CDS complement(2099526..2100068) + /locus_tag="Ccel_1753" + /inference="protein motif:PFAM:PF00293" + /note="PFAM: NUDIX hydrolase; + KEGG: cth:Cthe_0674 NUDIX hydrolase" + /codon_start=1 + /transl_table=11 + /product="NUDIX hydrolase" + /protein_id="ACL76104.1" + /db_xref="InterPro:IPR000086" + /translation="MDYNEKTLKTEDIYKGNIIKVQNLTVSLPNGKEATRDIVLHPGA + SVVVPINEKGELYMVKQFRKPLDMTTLELPAGKLDSVGEDPKLCAERELMEETGLRAG + KIEHLISIHTTPGFCNEVIHMYVATELIEGESCTDEDEFLDVEKIHVSKLVDMILNHE + ITDGKTIIGVLMAERMLREK" + gene complement(2100082..2100519) + /locus_tag="Ccel_1754" + CDS complement(2100082..2100519) + /locus_tag="Ccel_1754" + /inference="protein motif:PFAM:PF00075" + /note="PFAM: ribonuclease H; + KEGG: cth:Cthe_0673 ribonuclease H" + /codon_start=1 + /transl_table=11 + /product="ribonuclease H" + /protein_id="ACL76105.1" + /db_xref="InterPro:IPR002156" + /translation="MKQIEIYTDGACSGNPGAGGWGAVLMYGEHKIEISGFEKSTTNN + KMELTAAYEALKRLKEPCRVNLYSDSAYLVNAFLQGWLDKWIKNGWKRNKNEEVKNVD + LWKELVKLADIHEIKWIKVKGHADNEYNNRCDKLATDEIKKNS" + gene complement(2100548..2101360) + /locus_tag="Ccel_1755" + CDS complement(2100548..2101360) + /locus_tag="Ccel_1755" + /inference="protein motif:TFAM:TIGR00112" + /note="TIGRFAM: pyrroline-5-carboxylate reductase; + PFAM: NADP oxidoreductase coenzyme F420-dependent; + 6-phosphogluconate dehydrogenase NAD-binding; + NAD-dependent glycerol-3-phosphate dehydrogenase domain + protein; + KEGG: cth:Cthe_0672 pyrroline-5-carboxylate reductase" + /codon_start=1 + /transl_table=11 + /product="pyrroline-5-carboxylate reductase" + /protein_id="ACL76106.1" + /db_xref="InterPro:IPR000304" + /db_xref="InterPro:IPR004455" + /db_xref="InterPro:IPR006115" + /db_xref="InterPro:IPR011128" + /translation="MKKIGFIGTGMMGTAMIKGIIGAKIVNPSDIHVFDLDKAKLEVL + CNDLRVNAEESSREIVNKCDFVFLAVKPNVVKIVLEDIKDVFSNEKLFISIAAGIPLK + TYKNTLGQDKKIIRAMPNTPAVIGEGMTIISFDSCVQDSEVKEAMDLLSSLGKVECMD + EKLMNEVVALTGSSPAYIFMLIEAMADAAVLSGIPRQTAYRLASQAVAGSAKMVAETG + KHPGELKDQVCSPAGTTIEAVAALEKNGFRNSIMEAMNECTKKAKELGKIYG" + gene complement(2101508..2102806) + /locus_tag="Ccel_1756" + CDS complement(2101508..2102806) + /locus_tag="Ccel_1756" + /inference="similar to AA sequence:KEGG:Csac_2054" + /note="KEGG: csc:Csac_2054 phenylacetate--CoA ligase" + /codon_start=1 + /transl_table=11 + /product="phenylacetate--CoA ligase" + /protein_id="ACL76107.1" + /translation="MIWNTQVECMSRNSMKELQLERLKNTVKVAYENVPMYKRKFDEI + GLRPEHIQTLKDIEKIPFTTKNDLRDNYPYGLFAAPLKKIVRLHASSGTTGKPIVVGY + TKNDMENWSENIARLVIAAGGREDDIAQIVFGYGLFTGGFGLHQGLEKVGVTVIPASA + GQSERQLMVMQDFGTTILVGTPSYVLYLAEIADELGVDKSKLKLKLGLFGGEGHTPEM + RAEIERRWGIKATENYGLSEIQGPGVAGECYCQCGMHINEDHFYPEIINSETGEAFEY + GNKGELVLTTLTKEGIPMLRYRTKDITILNPEKCECGRTTVRMNKVLGRTDDMLIIRG + VNVFPSQIESVLIGLEGIGPHYQIIVTKNGYMDAIEVLVELIDGKLLEKFSELEKLEK + KIRHELKVVLQIDAKVRLVEPKSIERTTGKAKRVIDMRNK" + gene complement(2102828..2104423) + /locus_tag="Ccel_1757" + CDS complement(2102828..2104423) + /locus_tag="Ccel_1757" + /inference="similar to AA sequence:KEGG:GSU0226" + /note="KEGG: gsu:GSU0226 L-lactate permease, putative" + /codon_start=1 + /transl_table=11 + /product="L-lactate permease, putative" + /protein_id="ACL76108.1" + /translation="MVGSLILTLLPILVIVCMLVIFKKSADISGIIGWLCVSVVALVF + FKTSLPVIFRSTVSGVIRSFPVSMIVLTSLFMMAYMEKTGALKRIIIFIKTIASHNKA + VQIMMINIGFGTLMVAVGATPVSILPPILLAMGYSTYVSIALPSIGYDSLCTYSLLGA + PLVAFLDFANNFLGQGHEITPSQAGRVFFMFLPLVSTLIGFCMLYIVDKWDGIKKGFL + PCIVTGGVIAVVSYFTNKVDNLVTLTGVLSGLAVILAMALYLKFTGKKVIDKSILTDE + EREYEKKYPLWKAMSPWIILIGFILVLNLPKPVYDFLYNLTLPIRGIAVDGKPIATRA + LWNAYTWIAVAVVVSMLVIQPKKTELKDSLKIWIKRAPRPVFSAAIFFAIGDVMNYSG + WSLDTMAYKTESMIKVLANTSADAFSGAYGFITGFVGLFGGFVTGSEASTIAMFANYT + METANKLNLGLDGLIIVTAALAFGGGLASVISPAKLQNAAASIDKLGEENKVIRIAFV + FALLLTFITSLYAMVLLKTGLKI" + gene complement(2104543..2105550) + /locus_tag="Ccel_1758" + CDS complement(2104543..2105550) + /locus_tag="Ccel_1758" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein with 4 transmembrane + domains near carboxy terminus" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76109.1" + /translation="MKTAELKKKIVFSLIMIMMCFTALNYVNGYFNIIDFIGTQYTKI + KEKEMKYMYGERTSRGDRYTGNSEDYSGNNVTYDDQFNSTYDGRTLNSLNNINTNEYM + YLQEQNGNSSSGREFNFSDFTYDDNVKSITQQLKSQVESDSYRNKLDFYYINDFEYTF + NAIKELEPVIEKTAKAQKMPKELVSAVLFREMMFLGQEDILDGVPLLGGKSIGICQIG + IDNVRLNEQVVHGKSSLIANCSDQEIKEMLETPELAVYFCSVQLKARAIQVTGDKNVN + LKNLKKEQIIKILAEYNQSKITRNFGPIKTKEKYAEETYTYYKLFSEFNTSEDSASSS + K" + gene complement(2105886..2107517) + /locus_tag="Ccel_1759" + CDS complement(2105886..2107517) + /locus_tag="Ccel_1759" + /inference="protein motif:PFAM:PF07521" + /note="PFAM: beta-lactamase domain protein; + RNA-metabolising metallo-beta-lactamase; + KEGG: cth:Cthe_0611 RNA-metabolising + metallo-beta-lactamase" + /codon_start=1 + /transl_table=11 + /product="RNA-metabolising metallo-beta-lactamase" + /protein_id="ACL76110.1" + /db_xref="InterPro:IPR001279" + /db_xref="InterPro:IPR011108" + /translation="MNISFLGAAKTVTGSCFLVETKDTKFLVDCGMFQGKANEVLLNT + EPFSFNPGDLDFMLLTHAHIDHSGRIPKLYMDGFKGTIYATKPTVQLCGIMLPDSGHI + QEMENEWTNRKRQRAGQSPIKPLYTIKEATDCLSLFKGVAYDEVISVSQDVRVRFNDA + GHILGSAIVEIWIRENNQETKIVFSGDIGNKGMPILRDPSIIGDTDYLIVESTYGDRL + HTLKKETDKIEKFINIISETISKGGNVVIPSFAVGRTQELIYDLNKYMDVFDDKVNQI + LNVPVYVDSPLATSATQIFRENLDCFDEEAKEYIANGDNPLDFPSLKFTQSPEESRKL + NEKSESMIIISASGMCEAGRIKHHLKHNLWREESTILFVGYQAEGTLGRKIQDGAKKV + RLFGEEIFVNARIETIDGFSGHADKDGLISWIGSIGRKPKKIFVVHGEQGVGASFAQT + ITDELGLQCIVPSRGESFVISGGNIYEHVPSDKAKKRFKRLAVVEMLETLKEEFDELS + EILKSDLKQEKSDVEIDEIAAKLKMVEKSFIEALK" + gene complement(2107610..2108596) + /locus_tag="Ccel_1760" + CDS complement(2107610..2108596) + /locus_tag="Ccel_1760" + /inference="protein motif:PFAM:PF05343" + /note="PFAM: peptidase M20; peptidase M42 family protein; + KEGG: cth:Cthe_0609 peptidase M42" + /codon_start=1 + /transl_table=11 + /product="peptidase M42 family protein" + /protein_id="ACL76111.1" + /db_xref="InterPro:IPR002933" + /db_xref="InterPro:IPR008007" + /translation="MQETLKTVTQAFGVSGNEEEIREIITTEIKKYVDEIKVDAMGNL + IAVKKGKKKKILFAAHMDEIGVIATFIDDNGFIRFSNLGGVSAFNSLAQRVRFQNGTI + GCINVEEKLESMKTLRLGKMYIDIGCTSKEEAEKYVKVGDTASFTGDFHVQGDYAVSK + AMDDRSGCAVLIELIKTMPKTDNEIYFVFTTQEELGLRGAKTASFGIMPDCAIAIDVT + RTGDTPECNSMEVKLGKGPAIKVKDSSYIAHPQIRRILQNLAQENGIPYTLELLDRGG + SDPGAMQTSGTGIPCGGISIPCRYVHTPCEMVSIQDLNNCVKLAGLFMKRYK" + gene complement(2108628..2109674) + /locus_tag="Ccel_1761" + CDS complement(2108628..2109674) + /locus_tag="Ccel_1761" + /inference="protein motif:PFAM:PF05343" + /note="PFAM: peptidase M42 family protein; + KEGG: cth:Cthe_0608 peptidase M42" + /codon_start=1 + /transl_table=11 + /product="peptidase M42 family protein" + /protein_id="ACL76112.1" + /db_xref="InterPro:IPR008007" + /translation="MMLIKELTDLNGVSGNENEVREYIKSKINGLCDSIEVDSIGNII + AYKKGSSGKYKVMLSAHMDEVGFMVSGYMEKGFLKFKPVGGIDSRILPGKRVVIGKKR + LKGVIGAKPLHQQSSEERERIAKIKDLYIDIGAETKEEAEKMAPLGEFIAFDSEYVEL + GKDCIKAKALDDRIGCAVLMEVLKYNFEFDLYACFTVQEEVGLRGAQVAAFKIMPDIA + LVLEGTTCADVPEVKPFDFSTVLGNGAALTLVDRTCYSDRKLVQFLYDTAVKNGIKVQ + YKQTTTGGNDAGQIQRTGTGVKTASISVPCRYIHSPVSVMSMSDFECVERLTLAALNE + MNKDKDFIKNIAAV" + gene complement(2109728..2110786) + /locus_tag="Ccel_1762" + CDS complement(2109728..2110786) + /locus_tag="Ccel_1762" + /inference="protein motif:PFAM:PF05343" + /note="PFAM: peptidase M18 aminopeptidase I; peptidase + M20; peptidase M42 family protein; + KEGG: cth:Cthe_0607 peptidase M42" + /codon_start=1 + /transl_table=11 + /product="peptidase M42 family protein" + /protein_id="ACL76113.1" + /db_xref="InterPro:IPR001948" + /db_xref="InterPro:IPR002933" + /db_xref="InterPro:IPR008007" + /translation="MEISNCLEYLSGLVAVAGFEASAAAKIAETFRDYCDEVRIDKFF + NVIFLKKGFNKSAKKILITAHIDEIGFLVNSIDDKGFIGISPIGGIDSKILLAQEVII + HGSEDIPGIIGAMPPHLMKQEDAGKAVKIKDLRVDTGLKGEELKKIVSIGDVVSLKSS + FSLMNKNKASGKSFDNRTGIVCMMEILRGLKDINHENDIIFMASTQEETSLVGVTTAA + FALMPDAAIVIDVCHGDIPELSKGMSSTPGKGPEISIGPNLHKGMVEKMFELAKDICI + PFQKMVESGDTGTEAWATQVSGCGIPTALLSIPVRYMHTAVETVNLDDIKFAARIITE + FARLSSEKLETLLEWKNI" + gene 2110959..2111035 + /locus_tag="Ccel_R0042" + /note="tRNA-Met2" + tRNA 2110959..2111035 + /locus_tag="Ccel_R0042" + /product="tRNA-Met" + gene 2111073..2111148 + /locus_tag="Ccel_R0043" + /note="tRNA-Phe1" + tRNA 2111073..2111148 + /locus_tag="Ccel_R0043" + /product="tRNA-Phe" + gene complement(2111200..2111376) + /locus_tag="Ccel_1763" + CDS complement(2111200..2111376) + /locus_tag="Ccel_1763" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76114.1" + /translation="MLDNYLSGGVKNMKLIKKETFKDILAIFIAVIQVVWPFILISIG + VYLLLTLFLTKIWL" + gene complement(2111369..2112334) + /locus_tag="Ccel_1764" + CDS complement(2111369..2112334) + /locus_tag="Ccel_1764" + /inference="protein motif:TFAM:TIGR01727" + /note="KEGG: tte:TTE2526 ABC-type + dipeptide/oligopeptide/nickel transport system, ATPase + component; + TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase + subunit; + PFAM: ABC transporter related; Oligopeptide/dipeptide ABC + transporter domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="oligopeptide/dipeptide ABC transporter, ATPase + subunit" + /protein_id="ACL76115.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR010066" + /db_xref="InterPro:IPR013563" + /db_xref="InterPro:IPR017871" + /translation="MSEALVEVKNLKKYFPIKGGVFQRTVGHVKAVEDISFEINKGET + LGLVGESGCGKSTVGRTILRLHEKTGGEVLFKGTEIFELRKQEMQKLRPRIQIVFQDP + YSSLNPRLTVGEIIGEALLEHGFCEKKNLKQRVLKVMDQCGLLTFHIDRYPHEFSGGQ + RQRIGIARALALNPEFIVCDEPVSALDVSIQSQIINLLSDLQKEYGFSYLFISHDLSV + VKHISHRVAVMYLGCLVEIADKVQLYDNPFHPYTKALLSAVPLPDPRLKREKIVLSGD + LPSPANPPSGCRFHTRCPVCRDICKREVPELKDVGQNHKVACHYA" + gene complement(2112331..2113308) + /locus_tag="Ccel_1765" + CDS complement(2112331..2113308) + /locus_tag="Ccel_1765" + /inference="protein motif:TFAM:TIGR01727" + /note="KEGG: tte:TTE2525 ABC-type + dipeptide/oligopeptide/nickel transport system, ATPase + component; + TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase + subunit; + PFAM: ABC transporter related; Oligopeptide/dipeptide ABC + transporter domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="oligopeptide/dipeptide ABC transporter, ATPase + subunit" + /protein_id="ACL76116.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR010066" + /db_xref="InterPro:IPR013563" + /db_xref="InterPro:IPR017871" + /translation="MSEKLLEIKDLHTFFYTDAGVVKAVNGVSFQVNKGQTIGIVGES + GCGKSVMSLSIMRLIQDPGKIVEGQVIFSGQDLVKLSQSEMRKINGDRISMIFQEPMT + SLNPVFTVGNQIAEALILHENLTKKQAREKAIEMIATVGIPRAEGIYDSYPHELSGGM + RQRIMIAMALSCNPELLIADEPTTALDVTIQAQILDLLKEIKRKFGTSIMLITHDLGV + VAEMADYVIVMYAGRIIEQGNVNDIYLNPMHPYTIGLLKSKPSITSVSDRLYTIPGQV + PNLIDLPEICYFSDRCKMCKDVCKQGFPKLIDMGNDHLVACTLFEEVTK" + gene complement(2113324..2114730) + /locus_tag="Ccel_1766" + CDS complement(2113324..2114730) + /locus_tag="Ccel_1766" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease + component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76117.1" + /db_xref="InterPro:IPR000515" + /translation="MKIKIFTTISLFAAVLCYILPFLTFKDYSTISGFNLITSLFRRK + ELHKLSENIQTYVFTSTSVPLLVTFILFITAIVFVAYYQFRKSSKALSGALGAVICAV + LSYGVQLSNSQTSITDFFGTILLELKTGDGKTIFKTSEITCQTGSGARLLVIAAFVSL + ILVSVLKILDTRERNRGDNIQTPWAMAIKQFKRNKLAIVGIFLIFFLIIICFYGPVFS + KYSLLKTDILMAKLKPSHEHLLGTDSSGRDILTRLMYGGRISITVGFVAVLLEILLGT + TIGGMAGYYSGKIDNMLMRLVDIFLSIPFLPVVIIIGAIMSDLNIPPQRRIYFVMFII + GVLSWPVMARLVRGQILTLREQEYMIAAEALGLKDRRKIVRHLIPNVIPSIIVSATLG + IGEAILLESALSFLGLGVSMPFPSWGNMVQAVRDTNDFILRSWLWIPPGICIFTIVLA + INFVGDGLRDAFDPKMKK" + gene complement(2114744..2115709) + /locus_tag="Ccel_1767" + CDS complement(2114744..2115709) + /locus_tag="Ccel_1767" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cac:CAC0177 oligopeptide transport permease protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76118.1" + /db_xref="InterPro:IPR000515" + /translation="MWNYLARRILQMIPIIIGVSIILFLIINLVPGNFIDSKVSSTHM + TPQQIQHLKDIYGINDPIYLKYFKWVIGAIHFDFGDSFTYQKPVSTVINTYVWNSFSI + ALAAFILELIIAIPIGIISATRQYSKTDMIFTFLALIGISFPSFFLGYILIKVFAVNL + HILPLAGLNTPGSSYIGFEFIIDRLKHMILPVLVLALISAGSMMRYTRTAVLEIVKQD + YIRTARAKGLSEKVVIYKHALRNALIPIVTLIGLSLPGLFSGAIITESIFGIPGIGKI + ALEAVTKRDYPLLMGFSLFVAVLTLLGNLLSDIFYAIVDPRVKLK" + gene complement(2115803..2117542) + /locus_tag="Ccel_1768" + CDS complement(2115803..2117542) + /locus_tag="Ccel_1768" + /inference="protein motif:PFAM:PF00496" + /note="PFAM: extracellular solute-binding protein family + 5; + KEGG: tpd:Teth39_0202 extracellular solute-binding + protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 5" + /protein_id="ACL76119.1" + /db_xref="InterPro:IPR000914" + /translation="MKKKLAILLIVLSIILTVPACSSKSDSGDTSGGSSTGTKVSQTG + FDYKKYGVEYTASTDTAKSPKVATDRKDTLVVGLPDTTGIFNYLYGDNAYDWFAIYTM + FDFNIDVDFDGKAIPGATDYTISEDGLTYTFKIKDGVKFWDGNPATASDLEFAYYLEA + DPKYDGPSDISKTFIKGLDPYKNGNADKIEGIKVLDDKTLQITVDKASGPAIYALQVP + LLEKKYYGADFKKGDTAKVKEKNGAPMGTGQYKFVEYKAGQELKLVANENYFKGAPKI + KNLIFSVTPTGQELQRVMAGETDIDMADVSPDNMKAAKDAGFIDIYRFATNGYGFVGL + NDADPKFSDVKVRQALMYALNRAAVVEKVYGEYARVVNIPESNVSWAYDDEGCNTYEY + NLDKAGQLLDEAGWKLNSNGKREKDGKEFKIKFSCMSPHPVTDIMVPVMKDDYAKLGI + DVTVENLDWPTLYQKATKKQLDAYFMANGLTPDPDNSLANAYKSDASQNYYNYKNNEV + DKLCEEGLKEISTEKRKPIYKELYKILNNDLPVLFVYQRSDMWVANSRIKNYELSSFR + DFFYNLYKAEIGK" + gene 2117852..2117936 + /locus_tag="Ccel_R0044" + /note="tRNA-Tyr1" + tRNA 2117852..2117936 + /locus_tag="Ccel_R0044" + /product="tRNA-Tyr" + gene 2118401..2120245 + /locus_tag="Ccel_1769" + CDS 2118401..2120245 + /locus_tag="Ccel_1769" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: aoe:Clos_1946 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76120.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MQSKNKGRFKMLYSFMEGYKWLFALAVLFTMLAIVFNYLMPQIT + KVIVDSVIGTEKLELPDFILNYIHSHGGRNMLRNNLLACSLLVLVLAALSGFFTLLFR + ICIAKASEGTIRKMRNHLFNHIQRLPYSWHVKNQTGDIIQRCTSDVEVIRNFISQQLI + EMVRTVFLVGFSITVMFTMNVRLSLIALAFLPIVVAYSSVFYNKIAAKFKFADEAEGA + LSAMVQENLTGVRVVRAFGRQNYEIENFDTKNDHFANYWIKLGFLLSKYWGIGDFVSG + LQVMLIVVMGSIDAAHGVITLGEFLVFVFYNSMLIWPVRNFGRILSELSKTSVSLNRI + LEIVGEEEEKDCEDAVTPDMTGDIEFKNVNFDYEGVKPVLKDISFKIKAGTTFGILGG + TGSGKSTITYLLDRLYNLPEGQGTIEIGGIDIRKIQLEHLRRNIGFVLQEPFLFSKTI + KENIDIFENTGDMDRIRYCADVAAVDDAVMSFSKAYDTIVGERGVTLSGGQKQRVAIA + RMLMQKPPIMIFDDSLSAVDSETDAKIRSALKNSTGQSTVLLISHRITTLMQADVILV + LDDGKISEIGSHTELLSNDKGIYKKIYDIQSSLETELSDSTVQTGGGN" + gene 2120245..2122077 + /locus_tag="Ccel_1770" + CDS 2120245..2122077 + /locus_tag="Ccel_1770" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: aoe:Clos_1945 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76121.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017940" + /translation="MAYYEEEDYKKPFSLKVWANVIPFVKLYKKAFAMAMSFLILVSL + IDIIYPFFQRYAINNFITPKTTDGIGKFALVNGCVLVIQAVAVIIFIRNAMTVELNVS + KSIRKSLFVHLQKLSFTYYNKTPVGYMMARVMSDTGRIGQMVSWGLIDLLWAVIYVIG + VFIAMLFLNVKLALLVMTIIPFISVITMYFQKKILNVNRKIRKINSTMTGAFNEGITG + ARTSKTLVIEDNNLKDFSQVTDKFYSSTMRATILNAVFIPIILCFSATSLTIVLTYGG + YIVMKNPSELGTLSVFITYAVSIFEPIQQIARVFADFVSTQANIERVTGLLETEPDIT + DTPEVIEKYGDNFNPKKENWEPLVGDIEFKNVTFKYPDGDEYILTDFNLKIPAGTTVA + IVGETGAGKSTLVNLACRFFEPTAGQILIDGRDYRERSQLWLHNNIGYVLQSPHLFSG + SIRENIRYGKFDATDEEIEAAIKIVAANSVINSLENGLDTNIGEGGDRLSTGEKQLIS + FARAVISDPRIFVLDEATSSIDTQTEQMIQEAIMHILKNRTSFLIAHRLSTIKKADII + LVVKNGKIIERGNHSELLKQKGYYYSLYKKQFEEETGAAVLNKV" + gene 2122291..2123541 + /locus_tag="Ccel_1771" + CDS 2122291..2123541 + /locus_tag="Ccel_1771" + /inference="protein motif:PFAM:PF05636" + /note="PFAM: protein of unknown function DUF795; + KEGG: cth:Cthe_1301 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF795" + /protein_id="ACL76122.1" + /db_xref="InterPro:IPR002119" + /db_xref="InterPro:IPR008513" + /translation="MKVLGIVAEYNPFHNGHMYHIEESKKLTGCDAVVCVMSGNFIQR + GEPAIINKFARTEIALGNGVDLIIELPVPFAVSSAEFFSYGAVSILNNIGIVDCISFG + SESGDIISLQKIAEILVSEPQSYKAELKKQLSAGLSFPVCRQRALDKYLKIQNDSNES + LSSLLETSNNILALEYLKALSRLNSPIQPYTVKRISNCYNTPQLTGSISSATAIRNSI + YKSEIDVSRQALPTLAQQIMDREFSLGRGPNSLYSFEDIILAFLRHATPQELEKIQDV + SEGLEYRIKNAADNSGSFDDLLANICTKRYPKTRIQRILISLLAGMKRFDMEQFMACG + GPQYARILGFNEIGRQLLSLMKKKSSIPVITKASHYKTSDDSPILRMLEIEARATDTY + VLAYKNPAFKKAGQEFTQNIIICR" + gene complement(2123548..2125215) + /locus_tag="Ccel_1772" + CDS complement(2123548..2125215) + /locus_tag="Ccel_1772" + /inference="protein motif:PFAM:PF00753" + /note="PFAM: beta-lactamase domain protein; + RNA-metabolising metallo-beta-lactamase; + KEGG: cth:Cthe_1302 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain protein" + /protein_id="ACL76123.1" + /db_xref="InterPro:IPR001279" + /db_xref="InterPro:IPR004613" + /db_xref="InterPro:IPR011108" + /translation="MSKSKKKLKVIPLGGLQEIGKNITAFEYGDDILVVDCGLSFPED + EMLGIDLVIPDITYLIKNKEKVRGIVLTHGHEDHIGALPYVLREINVPIYGTKLTLGL + IKCKLEEHGLLDTVQMETVHQGQTVQLGAFKVEFIRSTHSIADAVALAIFTPVGTVIH + TGDFKIDYTPIEGQPMDLARLAEIGKKGVLLLMCDSTNVENEGYTLSERTVGETFDQI + FMNCKSRILVSTFASNVHRVQQIFNAAVKFERKVTVLGRSMINVVNVAMELGYLNVPE + GVLIDLDNMDKVPRDKLVIISTGSQGEPMSALTRITFNEHKKVEIVPDDLVIISASPI + PGNEKLISKVINELFKKGAKVIYEALADVHVSGHACQEEIKLIHNIVKPKFFMPVHGE + HRHLRQHAELAFKMGMPKENIFIMEIGKVLELTNNSAKINGAVTAGKVLVDGLGVGDV + GNVVLRDRRHLSQDGLIVVVITIEGDTGNVVAGPDIISRGFVYVRESEDLMEQLKEIA + KQAIFKSSSKNQGDWSIRKSAIREALRDCIYERTKRKPMILPIIMEI" + gene complement(2125249..2126436) + /locus_tag="Ccel_1773" + CDS complement(2125249..2126436) + /locus_tag="Ccel_1773" + /inference="protein motif:PFAM:PF00534" + /note="PFAM: glycosyl transferase group 1; + KEGG: cth:Cthe_1303 glycosyl transferase, group 1" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase group 1" + /protein_id="ACL76124.1" + /db_xref="InterPro:IPR001296" + /translation="MKILMLSWEYPPRIIGGISRVVYDLANNLGRYGNQVHVLTCWEE + GTPDFENEKNVTVHRVRLSDVSTTNFIEWVLQLNFAMLESAVRLLQENKFDIIHAHDW + LVAYAAKVLKNSFSIPLISTIHATEFGRNNGIYSDMQKAINSVEAMLSDESEKLIVNS + KYMKEEIKSIFKVTGDKISVISNGIELNKFNKIEFDKEFRNNYAAPSEKIVFFVGRLV + SEKGVQVLLNAIPEIIRSYNDVKFVIAGKGPCLNNLIEQSRNLNIQNRVYFTGFVGEE + VLLKLYRCSDIAVFPSTYEPFGIVALEGMVAGIPVVVSDTGGLREIVDHRVNGMKFYS + GNSNSLADCILELLSNETLAKQISINALENVHRLYNWNIITEQILQEYNYVISQYNSS + NKN" + gene complement(2126785..2126858) + /locus_tag="Ccel_R0045" + /note="tRNA-Gln1" + tRNA complement(2126785..2126858) + /locus_tag="Ccel_R0045" + /product="tRNA-Gln" + gene complement(2127098..2130844) + /locus_tag="Ccel_1774" + CDS complement(2127098..2130844) + /locus_tag="Ccel_1774" + /inference="protein motif:TFAM:TIGR02785" + /note="TIGRFAM: recombination helicase AddA; + PFAM: UvrD/REP helicase; + KEGG: cth:Cthe_2039 DNA helicase/exodeoxyribonuclease V, + subunit A" + /codon_start=1 + /transl_table=11 + /product="recombination helicase AddA" + /protein_id="ACL76125.1" + /db_xref="InterPro:IPR000212" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR014016" + /db_xref="InterPro:IPR014017" + /db_xref="InterPro:IPR014152" + /translation="MSETKWTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKIT + DKENPVDIDSLLVVTFTNAAATEMRERIGAAISDTIEKNQGSKNISRQLILLNKASIT + TIHSFCLEVIRSNFQSIEIDPGFKILDETEATLLKSETLSDLFEEIYEDAEENEDFFE + LLESYGGNRDDLKIQDMVMSIYSFVQSYPWPEKWLEQQIESYNFEVGNDFGETTWGRI + LLETSLMRLEGLRDIMNEACAKIKNAQGLEKYLSVFIEDNDNLEKLIGICKTGMNWDQ + LYNYVNSFEFRNLPRCGKDAEKSVQESVKKIRDELKSVINGLRDEVFFMESDEIASDL + KTMYPILKCVSRLVMDFGRRYAHKKSQRASVDFNDLEHFCLNILAETDKDGNIRPTKI + AQNYKDKFTEILVDEYQDSNLVQEIIINMISKKDIGSPNVFMVGDVKQSIYRFRQAKP + ELFLEKYNNYSIDEDSSYRKILLFKNFRSRKDVVDGINYIFKQIMSQKVGELDYNEIE + ELNPGAGFSPCQNEETVVGGAIELHLIETSVGDNTVLSEGSEPMDEQDFPEEDEILDN + IQKEARMVANRIIELFQADKDGKKYAVYDKKLGEYRNVRFSDIVILLRTTRNWTEVFS + AELANADIPVFADTGSGFFKTPEVQVVLSLLQIIDNPYQDIPLLAVLRSPIVNFSTAD + LTDVRLMNRNASIFEALKETAVHDTQVSKKASDFLQKLEKWRDMSLYMSTHELIWQLY + NETGYFSIVGAMQDGERKQANLKILFERALQYENTSYSGLFNFISFIDKLKTNKGDMG + SAKVLGENDNVVRLMSIHKSKGLEFPVVFLCGCGKKFNMQDMYKSILLHQELGFGPDF + VDYKKRIKYPSIPKQAIAQKIRIETLSEEMRILYVAMTRAREKLIITGSVNNIEKSAL + KWLGTAQSNDNKFPPHNMLKAQNYLDWICPSVMRHKDSVILRNAAGLGVDYSGPTISD + DSSWTIILADQSDIAVAKRFETDTQDREDITKWLQEKGSADSGDSHEIHRRLDWKYTY + RDFAQIPSKISVTELKRYFHLNNDEDNSQLQYKTATIKKPAFLEGKKGLSPAEKGTAM + HFVMQHLDFHNEDIAGQVKIMVKKELLTEIQAKSIDIMKISAFINSVIGKRMLKSVKV + YREVPFNIELPYKEIYPQLPDVSDYEDKILLQGVVDCYFEEEDHIVLIDYKTDYIPYG + DKQSVKEKYRLQISYYSRALEMLTLKRVKERYIYLFSTGEIVEM" + gene complement(2130871..2134320) + /locus_tag="Ccel_1775" + CDS complement(2130871..2134320) + /locus_tag="Ccel_1775" + /inference="protein motif:TFAM:TIGR02773" + /note="TIGRFAM: ATP-dependent nuclease subunit B; + KEGG: cth:Cthe_2040 DNA helicase/exodeoxyribonuclease V, + subunit B" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent nuclease subunit B" + /protein_id="ACL76126.1" + /db_xref="InterPro:IPR014140" + /translation="MGLQFIYGRAGSGKSFHCLNSIKTKQNKDSNKKLVLIVPEQYTL + QAERDLIKVLGTGGILKTEVLSFRRMAYRVLNEVGGITYPHIHPSGKNMIIYRILERL + KDQFTIFHKSANCKGFVNTLSTLITELKRYNVRAESFDEVLQGLADDNYLSHKLKEIK + LIYSEFDSMLVDRYRDTDDELTLLSSKLEGTEIYAKSEIWIDGFAGFTPQEVEVISKL + IQQAENVHITMCTDILFDDVQADLTDVFAAVKKSCKKFVSIAESYGVKILPPVCLNTP + NLPRFKDSRELQSLETNYCSYSYRAYQLPTQDIELFESVNIYTEIEECARDIIKQCRD + NGMQFKDITVATRNLTGYENLIGVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFT + ENWSYESVFRYLKSGLTGIDNTKIDILENYVLACGIRGSRWTQEADWNTSIEFRPDDG + QKPENDEMLLNINKTRNEIREPLIRFRNRTKGRRTAGDFCAGIYEYLVEIGVEQRIRN + YIEKFTQSGQLRLAGEYQQVWNILMDVFDQAVEVMADETFGLEKFANVFKIGLAEYKI + SSIPASLDQVLVGSIEHIRSHEIKALYILGTNDGVFPSAGMSEGVLSDADREVLDKRG + IELASDTKTRAFDEQYLIYRTLTTPKNYLRLSWPIADHEGRTMRPSTIISRMRKIFPK + VTEKSNIVKPSADKQHIDLIASPIPAFNQLVCALRQKNEGIEQGEIWREIFAWFSGQD + EWKQKCDAMINALKYRNIAAPVDKSKIRELYGKSPYFTVSRLEKYTSCPFAFYVQYGL + GARERKIYRMSPPDVGTFMHAVIERFSKMVDENNYSWREFDRQWCSEQVSKIVDELLD + SMKNTILGGSKRFKALAVRLKRVVTRAVWLITEHIRRSSFEPVGYEVDFGDGGAYPPM + VIELDSGEKIRLVGRIDRIDALRAENGTYLRIVDYKSGEKDFKLSDVYYGLQMQLITY + LDALWEYSDKSNGEKIIPGGILYFRIDDPMIRCTDNSTPEEIETAIMKKLKMKGLLLA + DVQLIKYMDNTIEGNSIIIPARINKGDVLGKSSAATIEQFTVLRSYVKQLLKDMCSEL + MKGNVPISPYKKKKLTSCSYCNYSSVCQFDQSQKENSFRMLHDREDNDIWKLMNEIDV + KDN" + gene complement(2134360..2135304) + /locus_tag="Ccel_1776" + CDS complement(2134360..2135304) + /locus_tag="Ccel_1776" + /inference="protein motif:PFAM:PF02517" + /note="PFAM: Abortive infection protein; + KEGG: bay:RBAM_037910 YyaK" + /codon_start=1 + /transl_table=11 + /product="Abortive infection protein" + /protein_id="ACL76127.1" + /db_xref="InterPro:IPR003675" + /translation="MSIKYQDMGGTGNTKPSRFVASVSVILYFYFFIGSFIGSIPIVY + ALIKNRDAFYDLTFSNDIFGFMDRYVNPFANYIFTNFTIYLMLAGLVIAVKFIHYRTF + TSLITTKRKIEWSRFWVGFLVYGGLVSAGSLIDYFLSPETYTVSFDASKFWIALPFIL + IMTPLQAATDELVFRGYVIQSFGLKIKNGILLSAISGFMFTLPHLMNPEVTASNKVGV + ISTICMILNYFAIGMIFAMVTIKTNSLEAAIGAHAVNNLICFLIISYPDNVLSTNTVF + YTTNFNAVGSLISVIITGILFYFITGLIIKEPIKSEKI" + gene complement(2135440..2135814) + /locus_tag="Ccel_1777" + CDS complement(2135440..2135814) + /locus_tag="Ccel_1777" + /inference="protein motif:PFAM:PF02629" + /note="PFAM: CoA-binding domain protein; + KEGG: cth:Cthe_2077 CoA-binding protein" + /codon_start=1 + /transl_table=11 + /product="CoA-binding domain protein" + /protein_id="ACL76128.1" + /db_xref="InterPro:IPR003781" + /translation="MNEEQMLEKKVWAVVGANQDPEKYGNKIYKKLKNSGYEVYPVNP + GYETVEGDKCYGDLSSLPQKPYVIDMVVSPKRGRIIIEEAAKLGIKNIWLQPGTYDDK + LLKRINELELDAVMACVLVALR" + gene complement(2135900..2137618) + /locus_tag="Ccel_1778" + CDS complement(2135900..2137618) + /locus_tag="Ccel_1778" + /inference="protein motif:PFAM:PF01593" + /note="PFAM: amine oxidase; + KEGG: cpy:Cphy_2915 amine oxidase" + /codon_start=1 + /transl_table=11 + /product="amine oxidase" + /protein_id="ACL76129.1" + /db_xref="InterPro:IPR002937" + /translation="MICPSILYSKEPSPPQPDNPSFEERQAMAKYALFRTCHPEDYCN + ILNAFSPSENITAIARPGQFKGKSVGIIGGGLAGMAAAFELRKLGFDITILEASEDRI + GGRVYTYYFDREKKLYGELGPMRIPVNHETVWHYINLFKLKTRPFIQSDPETFIYLDQ + RRARNDPYGKNVMNYIYPTYDLASWEAKTSWQELGYYGIEAPVLEASPADRIEVIQVK + PRYSRQLLFWDSLNTRQMFEYKKLSQGAINLLSNLFPIGGEFLYHNYVDLVQEYFPVN + FWFLYEIAGGMVNLPLAFHRSFISNAPWEYYPEVPTELLGKVTWKQGIKVKGIYKCLE + NGKITLAYDNKRLMEKGYENFDYIVCAVPFSILRTFEIIPMFSNIKMQAIKEVTYGNS + QKTILNCNRRFWEEQGIFGGGSYTDLPVTAIWYTSSRGQVPQRLNQRNREAEPGVIVG + SYNFNLDAVRLGNMTDEGRFDKIKRNIEEVHGLAKGYLDNIVTDFKTQVWDNDPLFRG + AFCYFTPQQKKLFSWTMTLPEYGDRVFFAGEHVSAIHRWQQGALKSGMEAANAIACTN + PNTLLT" + gene 2137741..2138667 + /locus_tag="Ccel_1779" + CDS 2137741..2138667 + /locus_tag="Ccel_1779" + /inference="protein motif:TFAM:TIGR01292" + /note="TIGRFAM: thioredoxin reductase; + PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; HI0933 family protein; + KEGG: tex:Teth514_0924 thioredoxin reductase" + /codon_start=1 + /transl_table=11 + /product="thioredoxin reductase" + /protein_id="ACL76130.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR000759" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR004792" + /db_xref="InterPro:IPR005982" + /db_xref="InterPro:IPR008255" + /db_xref="InterPro:IPR013027" + /translation="MNDVIIIGGGPAGYTAALYSSRAQLDTLVIEKMFSGGQMATTDV + MENYPGFEEPIGGPDLALRMEKQARKFGTVVLNDEVLELELDSPIKKVKTKNNTFESK + TIILSMGASPKMLGLPKEEKFRGSGVSYCAVCDGAFFRGKTVAVVGGGDTAAEDALYL + ARFCPKVYIIHRRDTMRATKILQNELCCNNRIEFFWDSVVEEIEGQFGVEGLKIKNIK + TGEKSSIDVDGLFVAIGLNPNNSLVKDKLELTKEGYVITDDRMRTNIPGVFAAGDLRE + KYLRQVITAAADGASAAYNAEKYIIENMKNIT" + gene 2138741..2139166 + /locus_tag="Ccel_1780" + CDS 2138741..2139166 + /locus_tag="Ccel_1780" + /inference="protein motif:PFAM:PF00571" + /note="PFAM: CBS domain containing protein; + KEGG: cth:Cthe_2352 signal-transduction protein" + /codon_start=1 + /transl_table=11 + /product="putative signal transduction protein with CBS + domains" + /protein_id="ACL76131.1" + /db_xref="InterPro:IPR000644" + /translation="MKVKDIMTTNVTYVEPNASILDTAKLMQQHNVGSIPVCDKGSVV + GMVTDRDIVVRNIAIGKNPQQTPVSDIMTTGVTSVSPDMEMSQVTKMMADSQIRRVPV + VDQNNLVGIVALGDVATDAKFDTEVADTLTEISRPSKPQ" + gene complement(2139202..2139966) + /locus_tag="Ccel_1781" + CDS complement(2139202..2139966) + /locus_tag="Ccel_1781" + /inference="protein motif:PFAM:PF07739" + /note="PFAM: regulatory protein MerR; TipAS + antibiotic-recognition domain protein; + KEGG: dsy:DSY4240 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MerR family" + /protein_id="ACL76132.1" + /db_xref="InterPro:IPR000551" + /db_xref="InterPro:IPR012925" + /translation="MEYTIKKLAQIAGVSTRTLRYYDEIGILKPARINSSGYRIYGQK + ETDRLQHILFYRELGVELDKIGEFVNNPAYDCISALKDHRRKLLEKKNQLEQLIRTID + KTIAASEGRIEMTDKEKFEGFKQKIIDENDRKYGEEIREKYGEETVNQSYNKLKGMSQ + EQCKELEELTALVQETLKQAFKTGDPAGVLAQKAADLHRQWLSYSWPNYNSEAHAGVA + QMYVDDERFRAYYDKEQPGTAEFLRDAILIYTGKKD" + gene 2140111..2140665 + /locus_tag="Ccel_1782" + CDS 2140111..2140665 + /locus_tag="Ccel_1782" + /inference="similar to AA sequence:KEGG:CLD_3728" + /note="KEGG: cbb:CLD_3728 rubrerythrin family protein" + /codon_start=1 + /transl_table=11 + /product="rubrerythrin family protein" + /protein_id="ACL76133.1" + /translation="MSYTYPSSHPQGTARKVTNRLREIMIAELIAINGYQSHLANSNM + INVNEVWHHIMLDEIRHYETVLNLLRKYDPVQYKASLEQHEDSLKPKSPMQLYNPSYD + KQIILNNIREAIKGELEAVILYEEEIEAYSSYKDIKIAIQAIINDEKEHAEHLTQVMK + KYESEQFIYIKEKGKSEYQRRGKP" + gene 2140750..2140912 + /locus_tag="Ccel_1783" + /pseudo + gene 2140922..2141632 + /locus_tag="Ccel_1784" + CDS 2140922..2141632 + /locus_tag="Ccel_1784" + /inference="protein motif:PFAM:PF03734" + /note="PFAM: Peptidoglycan-binding domain 1 protein; + ErfK/YbiS/YcfS/YnhG family protein; + KEGG: cac:CAC2416 peptidoglycan-binding domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="ErfK/YbiS/YcfS/YnhG family protein" + /protein_id="ACL76134.1" + /db_xref="InterPro:IPR002477" + /db_xref="InterPro:IPR005490" + /translation="MFILINRNKLYWIFSVFLLLIALFFAVNTFVIKGNFTRHATNNQ + QQFLIFVHIDEKTLYLFENEKCIKKYPIASGKPGWPSPIGEWKIVEKSQWGKGFGGRW + LGLNVRWGNYGIHGTQDESSIGRSASHGCIRMYNRDIKELYDIAPLGTAVVIRNGPFG + PFGTGFRNLKPGDRGSDVLAVQERLKQLGYFNGYESGIYEDDLKEAIFQFQKDHNLKV + KITITTVDYNAMGYTEFE" + gene complement(2141646..2142032) + /locus_tag="Ccel_1785" + CDS complement(2141646..2142032) + /locus_tag="Ccel_1785" + /inference="protein motif:TFAM:TIGR00223" + /note="TIGRFAM: aspartate 1-decarboxylase; + PFAM: aspartate decarboxylase; + KEGG: efa:EF1858 aspartate alpha-decarboxylase" + /codon_start=1 + /transl_table=11 + /product="aspartate 1-decarboxylase" + /protein_id="ACL76135.1" + /db_xref="InterPro:IPR003190" + /translation="MNITLLSGKIHRATVTQAELNYVGSITIDQDLLEAAGIMEYEKV + CVVNINNGIRLETYTIAGEKGSGIICLNGAAARYAQVSDKVIIMAYAQMTKEEAQKHK + PNVVFVDDNNRITRKTNYEKHGQIVE" + gene complement(2142071..2142916) + /locus_tag="Ccel_1786" + CDS complement(2142071..2142916) + /locus_tag="Ccel_1786" + /inference="protein motif:TFAM:TIGR00018" + /note="TIGRFAM: pantoate/beta-alanine ligase; + PFAM: Pantoate-beta-alanine ligase; + KEGG: cbl:CLK_3626 pantoate--beta-alanine ligase" + /codon_start=1 + /transl_table=11 + /product="pantoate/beta-alanine ligase" + /protein_id="ACL76136.1" + /db_xref="InterPro:IPR003721" + /translation="MKSVNTIHEVKNIVKDWKKQGLSVGLVPTMGYLHEGHGSLILKA + RENSKVVVSIFVNPMQFGPTEDLEKYPRDLEKDLKYCEELGADLIFSPEPGEMYPEGF + CTSVDMSVLTEELCGLSRPSHFKGVCTIVNKLLNIVNPDRAYFGEKDAQQLVIVKRMV + RDLNMDIEIVGCPIIREKDGLAKSSRNTYLNSEERRAALVLSKSIFTGKDMVKKGCRE + TDVLLKKMKAIIDQEPLARIDYLKAVDTMTMQQVDTIDRPVLIAMAVYIGNVRLIDNF + SFIPD" + gene complement(2142913..2143776) + /locus_tag="Ccel_1787" + CDS complement(2142913..2143776) + /locus_tag="Ccel_1787" + /inference="protein motif:TFAM:TIGR00222" + /note="TIGRFAM: 3-methyl-2-oxobutanoate + hydroxymethyltransferase; + PFAM: Ketopantoate hydroxymethyltransferase; + KEGG: cno:NT01CX_1071 3-methyl-2-oxobutanoate + hydroxymethyltransferase" + /codon_start=1 + /transl_table=11 + /product="3-methyl-2-oxobutanoate + hydroxymethyltransferase" + /protein_id="ACL76137.1" + /db_xref="InterPro:IPR003700" + /translation="MTVEENRSKNTAASIQNQKRNGDKISMLTAYDYSTAKLMDEAGV + NCILVGDSLGMVMLGYENTLSVTMEDMIHHTAAVARGCKYAFVVADLPFMSYQTSVYD + AVVNAGRLVKEGNAHAVKLEGGKEVCPQIKAIVDAKIPLISHLGMTPQSINSFGGFKV + QGKDEAAAIKLIDDAKAVEAAGATAVVLECVPAELSKIITKKLSIPTIGIGAGKYCDG + QVLVYQDMLGIYSDFTPKFVQKYADLGSEMKSAFKKYICEIKDSTFPGLEHSYKIDEA + VIDKLISEEKL" + gene complement(2143810..2144655) + /locus_tag="Ccel_1788" + CDS complement(2143810..2144655) + /locus_tag="Ccel_1788" + /inference="similar to AA sequence:KEGG:EF1861" + /note="KEGG: efa:EF1861 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76138.1" + /translation="MNVGFIGAGKVGNTFGKYFEQNNIELTGYFDTDINAAQEAADFT + RSGLFTSVSELVKSSDMIFITTTDNSIEKVWNIVKQLSIKGKIICHCSGALSSDIFTG + IDKKGGFGYSIHPLFSCSSKTASYKELYNALITIEGSREHLQEVEELFRGLGNDTRII + DSTQKIKYHAAAVFASNQVIALAGQGTDILEQCGFSRNEAIKSVLFLMGHAIENIEKQ + GLVEALTGPVERNDVMTVRKHLQILSEEEKEIYISLSKKLIDIAKEKNPENNYVELEN + LLEHN" + gene complement(2144886..2146274) + /locus_tag="Ccel_1789" + CDS complement(2144886..2146274) + /locus_tag="Ccel_1789" + /inference="protein motif:TFAM:TIGR00389" + /note="TIGRFAM: glycyl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); + Anticodon-binding domain protein; + KEGG: cth:Cthe_1312 glycyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="glycyl-tRNA synthetase" + /protein_id="ACL76139.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR002315" + /db_xref="InterPro:IPR004154" + /db_xref="InterPro:IPR006195" + /translation="MAAEKTMEKIVALAKNRGFVYPGSDIYGGLANAWDYGPLGVELK + NNVKKAWWLKFIQESPYNVGVDCAILMNPQVWVASGHVGGFSDPLIDCKDCKTRHRAD + KLIEDWNNENNIEFRVDGLKNEELMQYIKDKGVRCPSCGSANFTDIRKFNLMFKTFQG + VTEDSKSEIYLRPETAQGIFVNFKNVQRTTRRKIPFGIGQIGKSFRNEITPGNFTFRT + REFEQMELEFFCEPGKDLEWFKYWKDFCYNWLLSLNMKKENLKLRDHEKEELSHYSNA + TTDIEFLFPFGWGELWGIADRTDFDLKQHMTHSKDDLSYFDPTTNEKYVPYCIEPSLG + ADRVTLAFLCEAYDEEEVAEGDVRTVLRFHPALAPVKIAVLPLSKKLGEDADKVYQML + AKSYYCEYDETGSIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRDRDTMQQVRIKIE + DLAAYFENKFEF" + gene complement(2146289..2146495) + /locus_tag="Ccel_1790" + CDS complement(2146289..2146495) + /locus_tag="Ccel_1790" + /inference="protein motif:TFAM:TIGR00690" + /note="TIGRFAM: DNA-directed RNA polymerase, omega + subunit; + PFAM: RNA polymerase Rpb6; + KEGG: cth:Cthe_1314 DNA-directed RNA polymerase, omega + subunit" + /codon_start=1 + /transl_table=11 + /product="DNA-directed RNA polymerase, omega subunit" + /protein_id="ACL76140.1" + /db_xref="InterPro:IPR003716" + /db_xref="InterPro:IPR006110" + /translation="MIYPSINELMKKVDSRYTLAVEAAKRARQLVDGATKMAKCDSDK + EVTIAINEIAEDKITYVRTKSGIK" + gene complement(2146513..2147118) + /locus_tag="Ccel_1791" + CDS complement(2146513..2147118) + /locus_tag="Ccel_1791" + /inference="protein motif:PFAM:PF00625" + /note="PFAM: guanylate kinase; + SMART: guanylate kinase/L-type calcium channel region; + KEGG: tpd:Teth39_1324 guanylate kinase" + /codon_start=1 + /transl_table=11 + /product="guanylate kinase" + /protein_id="ACL76141.1" + /db_xref="InterPro:IPR008144" + /db_xref="InterPro:IPR008145" + /db_xref="InterPro:IPR017665" + /translation="MQQKGLLVVVSGPSGTGKGTVCKKLLSQRDNVRYSVSATTRKPR + EGEIEGQSYFFVSESKFLDMIKNDALIEWDKYCDNYYGTPKSYVDSSMESGMDIILEI + TVEGALEIKQKYPDSVLIFILPPSFEELRRRIECRATECTDVIEKRLQKAASEIKYVS + KYDYLILNDSVDEAVMNIEKVLDSERLKPSRNVEIIESLFK" + gene complement(2147128..2147406) + /locus_tag="Ccel_1792" + CDS complement(2147128..2147406) + /locus_tag="Ccel_1792" + /inference="protein motif:PFAM:PF04025" + /note="PFAM: protein of unknown function DUF370; + KEGG: cth:Cthe_1316 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF370" + /protein_id="ACL76142.1" + /db_xref="InterPro:IPR007169" + /translation="MKLINIGFGNIVSANRLVAIVSPESAPIKRIIQEARDRGMLIDA + TYGRRTRAVIITDSDHIILSAVQPETVAHRLNTKEQDGNETDEDSVTQ" + gene complement(2147421..2148302) + /locus_tag="Ccel_1793" + CDS complement(2147421..2148302) + /locus_tag="Ccel_1793" + /inference="protein motif:PFAM:PF03755" + /note="PFAM: YicC domain protein; domain of unknown + function DUF1732; + KEGG: cth:Cthe_1317 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="YicC domain protein" + /protein_id="ACL76143.1" + /db_xref="InterPro:IPR005229" + /db_xref="InterPro:IPR005829" + /db_xref="InterPro:IPR013527" + /db_xref="InterPro:IPR013551" + /translation="MVRSMTGFGRGTFSDNGKEFTVEIKTVNHRYIDFYIKLPRQIGY + LEERVREVASQSLFRGKVDIFISFEDRSDNSRSVTLDEPLASAYIQAVEKLKEKYSLK + DDLSVSLISRFPDVLRIEKNEDDEEHLWSVLKIALDSAIASLLQMREKEGNELRNSLL + QKSDLMETIISDISQRSPQVVTEYKQKLEYRIKELLNQQTVDENRIAMEVAIFADRCG + IDEELVRLGSHLTQLRDILNIKKQPIGRKLDFLVQEINREINTIGSKSNDIIITKNVL + ELKSEAEKIREQIQNME" + gene complement(2148554..2148925) + /locus_tag="Ccel_1794" + CDS complement(2148554..2148925) + /locus_tag="Ccel_1794" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; + KEGG: cth:Cthe_1318 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="response regulator receiver protein" + /protein_id="ACL76144.1" + /db_xref="InterPro:IPR001789" + /translation="MGELKFVVVDDAVFMRTLIKRMIEENTNYHVVGEGSNGHEAIEQ + AKRTQPDIMTLDITMPEMDGIVAIKEILEVSPATKIIMVSAMGQQAMVIDAIKMGAKD + FIVKPFDKTRVQQAIENVINL" + gene complement(2148912..2149649) + /locus_tag="Ccel_1795" + CDS complement(2148912..2149649) + /locus_tag="Ccel_1795" + /inference="protein motif:PFAM:PF04452" + /note="PFAM: protein of unknown function DUF558; + KEGG: cth:Cthe_1319 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF558" + /protein_id="ACL76145.1" + /db_xref="InterPro:IPR006700" + /translation="MKESQIGDGRVNIIEEDFQHLKKVLRAQIKDELTVCCGGFDYTV + EIEEIKNSSIVCVITDINKNYTESSLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPV + MTERCVSRINTDKDAQNKLARWQKIAREAAKQCNRGIIPNIHYPITFKEAVEMASQAE + LSVIPYEKESAVGLKNVVARYQGITSGSIIIGPEGGFEEKEVKMAEDRGVKKISLGPR + ILRTETAGMVSLSLMMYELGDVSNGRT" + gene complement(2149646..2150596) + /locus_tag="Ccel_1796" + CDS complement(2149646..2150596) + /locus_tag="Ccel_1796" + /inference="protein motif:TFAM:TIGR00406" + /note="TIGRFAM: ribosomal protein L11 methyltransferase; + PFAM: methyltransferase small; ribosomal L11 + methyltransferase; + KEGG: cth:Cthe_1320 50S ribosomal protein L11P + methyltransferase" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L11 methyltransferase" + /protein_id="ACL76146.1" + /db_xref="InterPro:IPR004498" + /db_xref="InterPro:IPR007848" + /db_xref="InterPro:IPR010456" + /translation="MKWYEVRVSTTDEASDAVSEMLTTMGAGGVAIKDPFDIKKEILK + PNSLDYADDEFLESLGEDVVIQAYFQSGNDIDKLLKQINEGLVNISQFLNIGKGLEGY + NEVDDEDWSTAWKKYYKPLQLTDRIVIKPTWEDYSPNADEIVIQMDPGMAFGTGTHET + TQMCSILLDKYMKDDTEVLDIGCGTGILSIIAAKLGAKQVEAIDIDEVAVKVARENIE + LNQEITKVSARKAVLSDLKAEEHKYDIIVANIIANVIIDLSSQIPYYLKKESLFITSG + IIKERKQEVIDACEKNGMSRIETLEMGEWVAMVFKCPDTL" + gene complement(2150635..2151774) + /locus_tag="Ccel_1797" + CDS complement(2150635..2151774) + /locus_tag="Ccel_1797" + /inference="protein motif:TFAM:TIGR02349" + /note="TIGRFAM: chaperone protein DnaJ; + PFAM: DnaJ central domain protein; heat shock protein DnaJ + domain protein; chaperone DnaJ domain protein; + KEGG: cth:Cthe_1321 chaperone protein DnaJ" + /codon_start=1 + /transl_table=11 + /product="chaperone protein DnaJ" + /protein_id="ACL76147.1" + /db_xref="InterPro:IPR001305" + /db_xref="InterPro:IPR001623" + /db_xref="InterPro:IPR002939" + /db_xref="InterPro:IPR003095" + /db_xref="InterPro:IPR012724" + /translation="MADKRDYYEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGDTTA + EAKFKEVNEAYEILSDSQKRSRYDQFGHAGTDPNGFGGAGGFSTDFDFGGIGDIFETF + FGGSGFGGRSKTRRGPQKGADIKYSTEISFEEAAFGVEREINVSKMEVCSKCTGSGAK + PGSNVTTCNHCNGTGQVQIKQNTPFGQFINTKTCDACKGEGKIITEPCPACNGKGRLR + STKKIKIDIPAGIDDGQTISLRGGGDPGVKGGPNGDLYVNIRVKPHPLFTRQGNNVVC + EVPITFTQAALGAELEVPTLDGKVKYTVPEGTQTGSVFRLKGKGIPYLRGNGRGDQYV + KVNIEVPKKLNDKQKALLREFAEISGDDSHEQRKGFFDKMKDAFK" + gene complement(2151918..2153768) + /locus_tag="Ccel_1798" + CDS complement(2151918..2153768) + /locus_tag="Ccel_1798" + /inference="protein motif:TFAM:TIGR02350" + /note="TIGRFAM: chaperone protein DnaK; + PFAM: Heat shock protein 70; + KEGG: cth:Cthe_1322 molecular chaperone DnaK" + /codon_start=1 + /transl_table=11 + /product="chaperone protein DnaK" + /protein_id="ACL76148.1" + /db_xref="InterPro:IPR001023" + /db_xref="InterPro:IPR012725" + /db_xref="InterPro:IPR013126" + /translation="MAKVIGIDLGTTNSCVAVMEGGEPIVIANPEGNRTTPSVVAFSK + TGERMTGQVAKRQAITNPERTIISIKRDMGTDHKVDIDGKKFSPQEISSMILQKLKSD + AEAYLGETVTQAVITVPAYFSDAQRQATKDSGKIAGLEVLRIINEPTAAALAYGLDKE + HDQKIMVYDLGGGTFDVSILEIGDGVFEVLATNGNNKLGGDDFDQRIIDFLVDTFKKE + SGIDLKNDKMAMQRLKEAAEKAKVELSGVTSSNINLPFITADASGPKHLDVTLTRAKF + DEITADLVENTMVPTRQAMQDAGLTPDKIDKILLVGGSTRIPAVQEAVKKYLGKDPFK + GINPDECVAVGAAIQAGVLTGDVTGLLLLDVTPLSLGLETLGGVFTKLIERNTTIPTK + KSQVFSTAADGQTSVEIHVLQGEREMAQYNKSLGRFQLTGIPSAPRGVPQIEVTFDID + ANGIVHVSAKDLGTGNEQKITITASTNLSDSDIDKAVKEAEKFAAEDKQRKEEIDVRN + NADSLIYQSEKSLKDLGDKVSADDKSKIESGVNKVKDALKGTDIEVIKKATEELQQSF + YDISSKIYQQTQGAQSDPGAAGFGGQQEAPGAGQDENVVDADYKVVDDDK" + gene complement(2153841..2154434) + /locus_tag="Ccel_1799" + CDS complement(2153841..2154434) + /locus_tag="Ccel_1799" + /inference="protein motif:PFAM:PF01025" + /note="PFAM: GrpE protein; + KEGG: cth:Cthe_1323 GrpE protein" + /codon_start=1 + /transl_table=11 + /product="GrpE protein" + /protein_id="ACL76149.1" + /db_xref="InterPro:IPR000740" + /translation="MKKEKFPNEENKKTNEMNFEENNKEMESDTPEIVDSQGDETVNT + EIEELKAKLEEKTKQCEDFKNMVQRTAAEFDNYKKRTVKEKEALSLDAAIDTVNTLLP + VVDNLERAVKAAEGMEDNPLKEGVEMVMRQLKDCLGQLGVEAIEAVNNPFDPELHNAV + MHVTDDEIGENIVVEEFQKGYTMKGKVIRYSMVKVVN" + gene complement(2154462..2155508) + /locus_tag="Ccel_1800" + CDS complement(2154462..2155508) + /locus_tag="Ccel_1800" + /inference="protein motif:TFAM:TIGR00331" + /note="TIGRFAM: heat-inducible transcription repressor + HrcA; + PFAM: Negative regulator of class I heat shock protein; + KEGG: cth:Cthe_1324 heat-inducible transcription repressor + HrcA" + /codon_start=1 + /transl_table=11 + /product="heat-inducible transcription repressor HrcA" + /protein_id="ACL76150.1" + /db_xref="InterPro:IPR002571" + /translation="MLLDDRKLKILQAIIDDYIYSAEPVGSRTIAKKHELGLSSATIR + NEMADLEEMGLLEQPYTSAGRIPSDRGYRLYVDQLMKIDELNECEIEKIRSDMNIRIN + ELSQLIRSASAVMAKITKYTSMAVSPHMKKSVLKSVQVVPIESGKALVIIVTDANIVR + NNLIRIPESVTPAFLIQISNMLNEQLKGFTLEMLKSDILNEKFEKLTALPFRLIKPIL + DGIEELIITIDNPEVYLEGATNILNFPEFKEVDKAKEFLNILDEKKLVSDLLTNSVND + NNEIIIHIGNENAMEGIKDCSLVTASYSVGNHVIGTIGIIGPTRMEYSRVVSSMNYIR + NKINQEILKLLDNG" + gene complement(2155703..2156572) + /locus_tag="Ccel_1801" + CDS complement(2155703..2156572) + /locus_tag="Ccel_1801" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1220 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76151.1" + /translation="MRYLENAFKFTFKNFIITLPLLIAMAIPSMIMGVGSLGFLFNMK + NFEQIFEQMLDSSGTFIPTYRMFIDLYGPAMIISMIISAVLGLILSILVYPATYGMIN + KKYETGISTLSDMTSSMTKYIGRYVLYGLLKIAIWIGLVIAYLILVTIGIVVVTAVSK + VAGAILLVLFTLAFIAACIALGVYTSLWFTAVCVEDSDILTGLKNSFRYVSGSFGKIL + GISMLIAIFGSIGGAIIGVVVGWIPIIGGAVSSIVSYLAQFITIVFFFEIYREKSGKY + ACAEYYRQMNGGI" + gene complement(2156609..2157448) + /locus_tag="Ccel_1802" + CDS complement(2156609..2157448) + /locus_tag="Ccel_1802" + /inference="protein motif:PFAM:PF01063" + /note="PFAM: aminotransferase class IV; + KEGG: cno:NT01CX_1857 branched-chain amino acid + aminotransferase, putative" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class IV" + /protein_id="ACL76152.1" + /db_xref="InterPro:IPR001544" + /translation="MTFEENIGTNCIINGETLPSDALNQYSDEKYSACYEVIRIIKGT + PLFYDDHFSRLKSSVQKTQNELEITKRDLKAQIHKICELNKFTDCNVKVLVLLYEKEQ + ITLLHINKFYYPSQEEYDSGVKSCTVKLSRNNPSIKMVNTSYKAEVKRVAEANGAFEV + LLVNDSNRITEGGKSNVFFVKGDKIYTSPEEYILKGITRQYIIDVCVKLGYEVIETLI + SVEQLSNFDAAFITGTSINAMPLKIIDSCLLNSAENAVTQNVMKGYNSLVSAYIESNR + NKN" + gene complement(2157535..2158125) + /locus_tag="Ccel_1803" + CDS complement(2157535..2158125) + /locus_tag="Ccel_1803" + /inference="protein motif:PFAM:PF01966" + /note="PFAM: metal-dependent phosphohydrolase HD sub + domain; + SMART: metal-dependent phosphohydrolase HD region; + KEGG: cth:Cthe_2359 metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL76153.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /translation="MSDNSFHFFAFLSRMKYINRWGLMRNTYTENIQEHSLQVAIIAH + GLAVIRNTYFNGEVNPERVAILAMFHDCNEIITGDMPTPIKYYNPQISKIYKDIEDIS + KEKIISMLPEEMADEYYSLFFKNPDDTSCWRLVKAADRISAYIKCIEEVKAGNNEFKK + AQETILQTIMEINLPEVRYFMEKFIPSFNLSLDEID" + gene complement(2158134..2159279) + /locus_tag="Ccel_1804" + CDS complement(2158134..2159279) + /locus_tag="Ccel_1804" + /inference="protein motif:TFAM:TIGR01353" + /note="KEGG: gur:Gura_0243 metal-dependent + phosphohydrolase; + TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="deoxyguanosinetriphosphate triphosphohydrolase" + /protein_id="ACL76154.1" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006261" + /db_xref="InterPro:IPR006674" + /translation="MIWRQLREQQENLLSPYAARSVNSFGRIINEEKCPIRTDYERDG + NRILYSMEFRRLRHKTQVFFNAKNDHICTRMEHVLNVGSIAVTIARTLNLNQDLTYAI + ALGHDLGHAPFGHSGERVLDKCMKKVNLEFGFQHELHSLRVVEKLATRISKEKIHEKC + GLNLTFEVRDGIVSHCGENYNEYSLKRDLGKTPQSLCNVKDRGGLPFTLEGCIVRLVD + KIAYAGRDIEDAVRVNLMNVHDIPKDIRNELGNTNGEIINTLVCDMVENSYGRDCIRL + SPDKGQALEKLINENIRLIYKADKITRYEKIAENTLEGLFDSLLDSLSDFEKLQTNEN + KVYRMFYNFIADKAYDESESDAQKVIDFIAGMTDQFAQSCFEEIYWM" + gene complement(2159357..2159872) + /locus_tag="Ccel_1805" + CDS complement(2159357..2159872) + /locus_tag="Ccel_1805" + /inference="similar to AA sequence:KEGG:RBAM_013480" + /note="KEGG: bay:RBAM_013480 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76155.1" + /translation="MKKNYSFVGVLLIVAGAVLLVLKMLFGLDFLNLTTRDFWVFIVL + LIGLTFEFSFFITGKNSGLLIPGGIFTTIGLLFMFEVTTNWYFAEYTWPVYILSVAIG + LFQMYLFSGREKGLLIASMIIAGISAFFFACMFMNTILTFIKPSFFIPVALIAAGIAI + FASGRKTRGQW" + gene 2160104..2160853 + /locus_tag="Ccel_1806" + CDS 2160104..2160853 + /locus_tag="Ccel_1806" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bay:RBAM_037190 YycO" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76156.1" + /translation="MYKANYTPEGPQVDISSILKKESLSSTDYSLLFKQTGLSGTAID + EFRLSSDGNAKILSIQNNYFKRNKIFREQLNPFTVQESILVNGSISRFIQMAPIKNGD + ILLTKSCYTLYWRHGHCGIVIDAQKGITLESLTPGSHSITQDITKWQYFPTFKILRLK + NGDQKKLDEIASFAAKNLAGIKYGICSPKRYDDSKPKVENCSQMIWQAYYHYGYDIDG + NKGLLVTPSDLAKSDLFEVVQTFGFPPEKPW" + gene complement(2160862..2162874) + /locus_tag="Ccel_1807" + CDS complement(2160862..2162874) + /locus_tag="Ccel_1807" + /inference="protein motif:PFAM:PF00884" + /note="PFAM: sulfatase; + KEGG: cpy:Cphy_0635 sulfatase" + /codon_start=1 + /transl_table=11 + /product="sulfatase" + /protein_id="ACL76157.1" + /db_xref="InterPro:IPR000917" + /translation="MYMDKKIGLFQRYGSILFFPITIIYLESIFKIVVFKELFNIGIV + YMILFSIPAGILLYLVSNLFSSRVNRTISIVLTVFLTFIFIVQIVYFHIFKTFLAIYS + INGTGQVLQFWQEVLSAVKSKAAVILLLLVPLLLIISGKRVLFVKKVSIKTKAWLAFT + MVCIQITATILVFASGTGELSTGFIYSKAVIPDLSMNRFGMLTTSRLDVKHLVFRVNS + PRTEEKEEITAIADNTEILNKPQPEKTVETQDLQKPEINNDDNIMNIDFDKLIASESD + PNIVSMHRYFKSVKPTKKNNYTGMFKDKNLIMITAEGFSPYAVNKDLTPTLYKMYQEG + FRFTNFYTPMWGVSTSDGEYVACNSLIPKSGIWSFYISGKNYMPFCMGNQLKKLGYGT + RAYHDHSYTYYHRDVSHPNMGYDFKAVGNGLNIKKSWPESDLEMIQKTADEYMGKTPF + HTYYMTVSGHLMYTFNGNAMSAKNRELVKNLPYSSGVKAYLACNIEFDRAMGELIALL + EQSGIADDTLIAISPDHYPYGLTNKEISELAGHQIETNFELYKGIFILWSKGIKSEEI + SKPCASMDILPTISNLMGVEYDSRLLMGRDIFSDAPPLVVFSNWSWLTDKARYNSKNG + KFLLAEGETNESVNKQYRTEISKRVNDMFTYSEKILENNYYKKVIR" + gene complement(2163001..2163582) + /locus_tag="Ccel_1808" + CDS complement(2163001..2163582) + /locus_tag="Ccel_1808" + /inference="similar to AA sequence:KEGG:Cbei_4413" + /note="KEGG: cbe:Cbei_4413 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76158.1" + /translation="MNLRDKYIELYNTYIKRDGADKLLEYMLSKSSDFFTAPASTRFH + GSYEGGLVEHSINVYECLVDYLSRGRVKDIYDLNYDSETIAIVALLHDLCKINCYRPG + TRNVKDERGVWKTVPTYEYDDKMPYGHGEKSVYIITGFMKLTREEAFAIRYHMGFSGC + EDKRCIGDAFEQFPLAFALCTADMEATYFIEGK" + gene complement(2163792..2164742) + /locus_tag="Ccel_1809" + CDS complement(2163792..2164742) + /locus_tag="Ccel_1809" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: cth:Cthe_1890 cellulosome enzyme, dockerin type I" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL76159.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MEKNYTPKSKRVIRCMAVFMSVVIFLILIAPAKVNAEASSADNE + VVGSYTLFGDLNCDNKVDSIDYAKMKIILLGTTDQSTVNIKAADLNGDGDVNSLDLAL + MKKLIMGEIITFPVKTKYPSTVDNSSTYLFLDDSNNTFKVSLEENGSTGYQWEYTISD + NAAANLLSVDSYCFTPNLIGTPVQKVWTFKALKPGKYTIQFTYRRPWETDVQPLKTLK + YDIYVSSVSGTININQDDSFKIALMGGGIFGGTWKYSNTDETAICLLNKEIIDEKPGI + PDSLNLTEWTFIAVKPGNYKLIFEGSSLYSGKVQCEINVI" + gene complement(2165193..2166476) + /locus_tag="Ccel_1810" + CDS complement(2165193..2166476) + /locus_tag="Ccel_1810" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL76160.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene complement(2166675..2167517) + /locus_tag="Ccel_1811" + CDS complement(2166675..2167517) + /locus_tag="Ccel_1811" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; + KEGG: mbu:Mbur_2229 glycosyl transferase family protein" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL76161.1" + /db_xref="InterPro:IPR001173" + /translation="MNNNIIFPKISVLMPVYNTSNYVSKALDSVLAQTFTDFEIIAVD + DGSSDNSMEILKDYSIKDSRVKVFQNEENRGVSYSLNHALRHASAPLVARMDSDDIMV + KDRLEKQYTYMQKNPDCVVLGGQETYIDENDKITGNTKYPLSDAEIKRKFFQFQPIAD + PTSMYNRLKIPPEVFYFDESLTVAEGLDLYFRLFKYGKFANLEDSIILYRQRQGSLFS + TDIKRTFKFISMVRKRAKKQYGIKAPFTAGIINFSQKIITSILPLRVAVKLNDIIKKL + TVKV" + gene complement(2167518..2168618) + /locus_tag="Ccel_1812" + CDS complement(2167518..2168618) + /locus_tag="Ccel_1812" + /inference="protein motif:PFAM:PF03372" + /note="PFAM: Endonuclease/exonuclease/phosphatase; + KEGG: sgr:SGR_2286 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Endonuclease/exonuclease/phosphatase" + /protein_id="ACL76162.1" + /db_xref="InterPro:IPR005135" + /translation="MFINKKNIHRIVTVLLFLWLAFIISHLILAGRVYFWNFPASAPT + FLFTIISMILLLYFLFQKKKRIFNLVVVSICLILSLTQLDINLFSKTEVTNDLENYSP + IKVICWNTNLWDQDKDKDEFYSFIKKQDADVYLLQEYLHYQTEKDSGQPYRLCNIVPG + FPLHYMHFDDSERIRKEFPGYYFSTNNQFVIISRFPIKKSYTDYSEQYTVSDVNINGR + NVRFYNVHMLLHIETTNPLKPYFYDALHRRFLAREIGFKNLKRDLRNEKSDYFVAGDF + NSTKAMGVMDDLLKDHIDGVRYSNDILPLSYQLYGFKLWRIDFAILPKANDNIRFKTY + KTISPDKLSDHDPIVLSLDVKKSNLKLMEESD" + gene complement(2168658..2169476) + /locus_tag="Ccel_1813" + CDS complement(2168658..2169476) + /locus_tag="Ccel_1813" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; + KEGG: sma:SAV_835 glycosyltransferase" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL76163.1" + /db_xref="InterPro:IPR001173" + /translation="MKKASIVIPTKDKISRLRLVLKALEGQVDDTVEVIIVFDGCNKE + TLKNFEGIRLSYTPIKVIHEQNVGRAKARNSGILKASGNVLIFLDDDRIPSPNFVYKH + IKAHEKGRYAIVGERSDVNYPEEKLDEFYRNGLTDSDYSRIKKDSVSERFNYLKKTAR + IFLGQYIECVTFSTGNSSVQRQDLLNVGMFDENFTGWGLEDTDLGYRLYKSGVKIKRN + YSIVNYHLVHPVNNIQQNNENRRNFYYFISKIEGDKAAIRMTKLLHRIIYKQRF" + gene complement(2169505..2170917) + /locus_tag="Ccel_1814" + CDS complement(2169505..2170917) + /locus_tag="Ccel_1814" + /inference="protein motif:PFAM:PF00202" + /note="PFAM: aminotransferase class-III; + KEGG: bmc:BAbS19_II03620 aminotransferase class-III" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class-III" + /protein_id="ACL76164.1" + /db_xref="InterPro:IPR005814" + /translation="MKEEKELKLLTIEDGHKMTEKENLRLFKKHIGNNLGKTLALLGF + ADAIPIEASGMYITLSDGRKILDMTGHVGVLVAGHNHPRIIEARKKWAEERRLETWKF + FPSPYQGVLCHNLSLIFPEDLEIVFFCNSGAEANEGAMKLAEKYSGMSRKTIVFTDIS + FHGKTHATLTVSGSEKNQNHHFNKTENCIMVKYGDIDDFKRVIEENKTGRNSTKIGTF + IVEAIRTEGVVVPDKEYFKEVRRLCDKYDIVLIMDEIYTGFGRTGKWFAFEHQGICPD + IVSFSKAFGGGKATFAGFITRPRIFNKAYSKLNEATLHSTTYNGYGEEVTAAIEVLHI + IKDEKLVENSKEMGDYLLKGLLEVKREFPDLVADARGVGLLTCIKFHSRAEKVLKFFS + STGSELVEKFVTGSVITSMLKDYNILLNTPPHDSSQLLITPSLIITKEQIDYFIDSLK + KVLGGNLWKVGFDYIKRLNS" + gene complement(2170973..2172022) + /locus_tag="Ccel_1815" + CDS complement(2170973..2172022) + /locus_tag="Ccel_1815" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + short-chain dehydrogenase/reductase SDR; 3-beta + hydroxysteroid dehydrogenase/isomerase; Male sterility + domain; + KEGG: rca:Rcas_0368 NAD-dependent epimerase/dehydratase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL76165.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR013120" + /translation="MKKKVLITGNNGVLGRNLVKYLHNNGRENYELVLFDINQNNSEF + SSFRTYKGDIRKKEDVERVIGDIDIVVHCAGASPSYEESQIYDIIINGTANLLECAFT + TGKAERFVYISSTSVYGVPEKAPIYETDEVKPYDPYNRSKIETERLCDHWRTKGHCVS + VLRPRSFLGPERLGTFGILYDWASEGRNFPMLGPGKNKYQLLDVEDLCQAIYLAMSVD + ANNANDLFNIGAKDFSTIKDDYQAVLDAAGFNKKIKCFPAKPMFFILNILEKLKLSPF + YKRLYLKLNRNYYVSIEKAEKKLGYKPKHSNKDSLVRNYRWYLENKNKIGNKPGASNN + VVWNQGVLKYAKHFF" + gene complement(2172027..2173028) + /locus_tag="Ccel_1816" + CDS complement(2172027..2173028) + /locus_tag="Ccel_1816" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; + KEGG: sgr:SGR_2292 putative sugar transferase" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL76166.1" + /db_xref="InterPro:IPR001173" + /translation="MNSKPLVSVIIPNYNYEKTLPKCFDTLMNQTYKDFEIIFVDDGS + TDNSIEIAKKYPCKIFKTPKNGGVAAARNLGVEYASGDILFFLDSDVALYKDAIENTL + KEFEKDPSLGSVCGIYSKDPLFKGGLAKDYRTLQGHYWRISSVGYVTAGFFSLGAVKK + SVFQELKGFNVNLSNTEEIEFGNRLNQKYRLLLTDKVVGCHDDEERLKTLARKIHIRA + VQRIPFYLHRKKLTKGFETPLRGLGMLAVGLSTVAIPMTILSLYFAALFLVCLLAFVL + SDFGQYRFVYKEKGFFFTLVFIAFHWIITAAAFWGFVRGVLSMIFSRKFREKYSYEG" + gene complement(2173054..2174364) + /locus_tag="Ccel_1817" + CDS complement(2173054..2174364) + /locus_tag="Ccel_1817" + /inference="protein motif:PFAM:PF01943" + /note="PFAM: polysaccharide biosynthesis protein; + KEGG: mmz:MmarC7_1361 polysaccharide biosynthesis protein" + /codon_start=1 + /transl_table=11 + /product="polysaccharide biosynthesis protein" + /protein_id="ACL76167.1" + /db_xref="InterPro:IPR002797" + /translation="MTFTQGLIENIKIKSRKLIRNGEIRTFIENLGIVFIFRFTSAVL + SVIGLVLAARYLGAVSVGNITMMQNTAYLLYIPMCFGINLSIIKFLPDCNNKEENEKL + LGSIGVWSLVLTVVSIVVYWVFHSFINTALGFSATQLLLTVIMAVTINYSMITEAILR + SRKRFLTLGIIKMASSLIFFAFTLVSSLVLKNYYYFVYGIILNQLVVIIWSLKTIKIK + KFRFSMKTSKLAYKYGAINMVSGVLSYIMFSSDLYIVNHFCSAYDVGIYSLYQVNVKN + FFNLMFHEIFAVVFLPTIVQMNTMKIYKRIKSLIPIILPIAIIANMTISICLVLLYGR + SYTINWIYILLISVSLGFHFLYYVFNSVFTVEGKNGALLCMTVLGLPMPVLILISIVL + TRTWGINGQLISLLVTQLTLVGVFLFIIKFKYLKNKQTYINILK" + gene complement(2174398..2175405) + /locus_tag="Ccel_1818" + CDS complement(2174398..2175405) + /locus_tag="Ccel_1818" + /inference="protein motif:PFAM:PF01040" + /note="PFAM: UbiA prenyltransferase; + KEGG: cth:Cthe_2690 phosphoribose + diphosphate:decaprenyl-phosphate + phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="UbiA prenyltransferase" + /protein_id="ACL76168.1" + /db_xref="InterPro:IPR000537" + /translation="MEVKTKYDIICNKSENFQIFYKRKMVIMKQESSFNVINKKEKNS + FIDAVICFIKLIRVRQWSKNIFVFSGILFPSGVIGLLQVIQLFIAFFLFCVISSSVYI + INDIIDLEKDILHPVKRFRPIASGKIKVKFALAIFYIICPASIILSFLLNKYFGIILC + IYFVINLSYSLKLKEFVFIDLLIISFGFVLRTLSGIIIVNGTNSFWFLLSIAFLSLYL + GMNKRKKELLTLAEDSEKHRKNLGEYSIELINEIIPMLTACTVISYSFHTLYEVKVKY + TFFTIPIVVYGVFRYQYLTDKAGYGESPEMVLLKDKPIVLALVVWGVIYISAKLLTKS + F" + gene complement(2175471..2176270) + /locus_tag="Ccel_1819" + /pseudo + gene complement(2176828..2177292) + /locus_tag="Ccel_1820" + CDS complement(2176828..2177292) + /locus_tag="Ccel_1820" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76169.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene 2177909..2178955 + /locus_tag="Ccel_1821" + CDS 2177909..2178955 + /locus_tag="Ccel_1821" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76170.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(2179171..2179539) + /locus_tag="Ccel_1822" + CDS complement(2179171..2179539) + /locus_tag="Ccel_1822" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76171.1" + /translation="MLIDINWEEFFDGGAFEDITKESNKIWIVAIDQDPFSNSISSSI + TFEVTNVKRNQIVASDSYLTYRYLEKSRKNGKISPRGIVTQYIYKSKITDSRNNLILI + CDVEEYGFGGSELIEIIDTD" + gene complement(2179709..2180521) + /locus_tag="Ccel_1823" + CDS complement(2179709..2180521) + /locus_tag="Ccel_1823" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76172.1" + /db_xref="InterPro:IPR001584" + /translation="MCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRET + YGSPRITKALKNEGINCGKNRIAKLMKENNITAKTRKKFKATTNSKHNYPVADNILNQ + DFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQ + AIGRQRPSNGVIHHSDRGVQYASKEYQKVLKSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(2180569..2180853) + /locus_tag="Ccel_1824" + CDS complement(2180569..2180853) + /locus_tag="Ccel_1824" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76173.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDNSFKEQAVRLVTEQGKSVSIVAKDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene complement(2180919..2181212) + /locus_tag="Ccel_1825" + CDS complement(2180919..2181212) + /locus_tag="Ccel_1825" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76174.1" + /translation="MISSEIIKVLSDAIKLRKSVVLKYDRPGDNAKGERIGYPHALYV + HTSTNNILFDLFQIQGDSSKPLVAGGDWRQFDVKYVTSIWIKGDIFNVQNGYN" + gene complement(2181290..2182054) + /locus_tag="Ccel_1826" + CDS complement(2181290..2182054) + /locus_tag="Ccel_1826" + /inference="protein motif:TFAM:TIGR01764" + /note="TIGRFAM: DNA binding domain protein, excisionase + family; + KEGG: azo:azo3490 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DNA binding domain protein, excisionase family" + /protein_id="ACL76175.1" + /db_xref="InterPro:IPR010093" + /translation="MNEEQVNEIINGQIAILEGINKLLALFTLEPLNDATNPILGSTE + AAKLLGISKSTLIEGCNNKEIPFRKIGSKYIFSRVALMAWLHNVNMSYLFEKIEAVKK + RNREKLFGGDEDPVAILNNYLRFTINPISGANENFKLEFSEAKEEKEKVDAEVAAALI + GVSIGKMREIARGFLYNKIPISREGGKFMFPKEELLEWAETPFGKKIIEDYIKNKEIT + AKRREDADKRREEERLEKEAKKKARLKKKLNKSGVN" + gene complement(2182144..2182887) + /locus_tag="Ccel_1827" + CDS complement(2182144..2182887) + /locus_tag="Ccel_1827" + /inference="similar to AA sequence:KEGG:ABAYE0548" + /note="KEGG: aby:ABAYE0548 NAD-dependent DNA ligase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent DNA ligase" + /protein_id="ACL76176.1" + /db_xref="InterPro:IPR001357" + /translation="MIYRKPFDELIPLIQTSLEDNILTEEEIQDILWACNSFKGSSKY + YNIITADIQKLHGIMHGILADNQISLEEIEGLRNWIFENHHLKGLYPYDELLSLISSV + LSDGILDYNEKSMLKVFFSDFIDFNNSVNIDIYEINKLKDIIKIEGLCSVDPDINFCN + ELFCFTGVSSRLRRADIQNIVESLGGKFKNTVTKDTKYLVIGDNGNPCWAFSCYGRKV + EQAVTLRKSGKSILIVHENDFWNAVESVK" + gene 2182980..2183264 + /locus_tag="Ccel_1828" + CDS 2182980..2183264 + /locus_tag="Ccel_1828" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76177.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene 2183312..2184124 + /locus_tag="Ccel_1829" + CDS 2183312..2184124 + /locus_tag="Ccel_1829" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76178.1" + /db_xref="InterPro:IPR001584" + /translation="MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRET + YGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTRKKFKATTNSNHNYPVADNILNQ + DFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ + AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRAEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(2184187..2184351) + /locus_tag="Ccel_1830" + CDS complement(2184187..2184351) + /locus_tag="Ccel_1830" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76179.1" + /translation="MSIANYEDMEYAKYTFKSELDKAINMLEGIIDGIKIDGDINATE + VVELMNLTFP" + gene 2185189..2185785 + /locus_tag="Ccel_1831" + CDS 2185189..2185785 + /locus_tag="Ccel_1831" + /inference="protein motif:PFAM:PF04607" + /note="PFAM: RelA/SpoT domain protein; + KEGG: esi:Exig_1629 RelA/SpoT domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="RelA/SpoT domain protein" + /protein_id="ACL76180.1" + /db_xref="InterPro:IPR007685" + /translation="MTNDGIKQWFKNNKDRYYNFSEQLSDVIKSILNSEGIQYHTITF + RVKDIDSLVKKIEKKKYKDPINQITDFSGLRIIAYTNSDVNKICYLLENEFCIDYINS + NNKNLLLNVDKVGYRSIHYIVMYGSERLHLGEYKDFKDFKCEVQVRTLLEHAWAEIEH + DRIYKSQYDIPDNLKRKFNLQSGNLELIDNEFDINQPN" + gene 2186079..2187125 + /locus_tag="Ccel_1832" + CDS 2186079..2187125 + /locus_tag="Ccel_1832" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76181.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(2187826..2191526) + /locus_tag="Ccel_1833" + /pseudo + gene 2188302..2188640 + /locus_tag="Ccel_1834" + CDS 2188302..2188640 + /locus_tag="Ccel_1834" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76182.1" + /translation="MDKITDTKTEFRLKQWTQIVQTCQASGMTAVSWCNQNNVNIKSY + YYWLRRIRTLTIENGPLELQSKGQQIVPVSFRQTAAVTIHINSVSIDIPDGTSKDTIA + AVLSALKTIC" + gene 2188634..2188990 + /locus_tag="Ccel_1835" + CDS 2188634..2188990 + /locus_tag="Ccel_1835" + /inference="protein motif:PFAM:PF05717" + /note="PFAM: IS66 Orf2 family protein; + KEGG: cth:Cthe_0516 IS66 Orf2 like" + /codon_start=1 + /transl_table=11 + /product="IS66 Orf2 family protein" + /protein_id="ACL76183.1" + /db_xref="InterPro:IPR008878" + /translation="MLGDISKAEDIYIVCGYSDMRKSIDGFAAIIKGTFGMDPFSPSL + FLFCGKRRDRLKALYWEGDGFVLLYKRLENGSFKWPRTPEQARRLTMQEFRWLMDGLA + IDQPKAIREAKQGDIY" + gene 2189066..2190655 + /locus_tag="Ccel_1836" + CDS 2189066..2190655 + /locus_tag="Ccel_1836" + /inference="protein motif:PFAM:PF03050" + /note="PFAM: transposase IS66; + KEGG: cth:Cthe_0515 transposase IS66" + /codon_start=1 + /transl_table=11 + /product="transposase IS66" + /protein_id="ACL76184.1" + /db_xref="InterPro:IPR004291" + /translation="MQKIDITGLSPNQIEYVSSLEKTVENQQVRIEQLTELLIKSQKT + LYGQSSEKRRYVFDEDSGQLSLFNEAEVEADNKAEEPTVQTIVAAHARKPKRTKEELA + ETVPVVEVVCDLDKDKRTCNICNTDLRYLGKEYVRDELEIIPAQVRILRYIRLNYVCK + ECEKETCEANIVKAPVPKPVMKRSLASASTVAYVMYQKYANGMPLYRQEKDWANQGVK + LSRATLANWIIRPSHEWLEPMYDAIKKNLVTEPLIHADETVLQVLKEPGRRATTESRM + WVYTSGQSLTPAVLFEYQPTRSGQHARRFLEGFSGYLQTDGYSGYNAVPNVIHCGCWA + HLQRKFEEAIPNGADNKSSKAAIGYDYCNRLFAMEKKWIELSSENRHQERRKNAKPLL + DEFWQWVSHLNPLQNSNLGKAVTYALNQKETLINFMLDGCIEISNNRAENAIRPYVTG + RKNWLFADTTRGAKASAIVYSMIESAKANQLNPYMYLVYLLSKLPDLKELTQKSLTPY + LPWSPELPCWCHKDSNKAPQD" + gene complement(2191601..2192692) + /locus_tag="Ccel_1837" + CDS complement(2191601..2192692) + /locus_tag="Ccel_1837" + /inference="protein motif:PFAM:PF00227" + /note="PFAM: 20S proteasome A and B subunits" + /codon_start=1 + /transl_table=11 + /product="20S proteasome A and B subunits" + /protein_id="ACL76185.1" + /db_xref="InterPro:IPR001353" + /translation="MSLCVAMNNPKNFVYIASDGRIRNIGNRLISDNHNKITKITDHV + LLFASGVQGAADYVAKKVKKEVNEQTPISEIFTLVQNESRKCHEDYLKRYPELNRFCN + SGHTTIAAILAYYDLKQNICGYVEYSHVNGFIPMVHNDSELKTRGMGQDFALELILKN + FSNIQPVDNIVNAYRQVSQKEDAVGGKITIYCIDRNGAKLVYEDAMQDLTFGRNVKMG + PDARLSWGQVTDQPFIPQTAADVGALTSQQLYTTLGLDYVVTGKIFASQINGGIANLT + DSVTIGTPNSDGDKSIYFENMGNPVATIYKNRNGELSIWCDNKIRLSGYDGTQIVGAV + GFFDKEPIPKQTASKLPNTITYNRFRKFE" + gene complement(2193208..2194254) + /locus_tag="Ccel_1838" + CDS complement(2193208..2194254) + /locus_tag="Ccel_1838" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76186.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(2194342..2194809) + /locus_tag="Ccel_1839" + CDS complement(2194342..2194809) + /locus_tag="Ccel_1839" + /inference="protein motif:PFAM:PF04586" + /note="PFAM: peptidase U35 phage prohead HK97; + KEGG: bce:BC2586 phage prohead protease" + /codon_start=1 + /transl_table=11 + /product="peptidase U35 phage prohead HK97" + /protein_id="ACL76187.1" + /db_xref="InterPro:IPR006433" + /translation="MDKAIIQGNINTNESRAIFNEDIKPFRERIKEGAFKESLQNYGK + VPLYFNHERQIASIEDISLCENDLGLTFIANISDIEVISKCIYGSIKGCSFNFVPFEE + RIIHKELINSRIIEDMILREVSVLDKEPAYPSSINIIYVPDTLRIQAFKYFTC" + gene complement(2194847..2195545) + /locus_tag="Ccel_1840" + CDS complement(2194847..2195545) + /locus_tag="Ccel_1840" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76188.1" + /translation="MSKKINLKSKVSKINYDEILNHDVIREEKGALLGGSTAFPSGTI + KHVLGRCKDINKELYTTLDSKINELLPENILQCVTETMKAKGIVDRIEDEIQQLKLKA + ANYSDGTTESKIEAMSIQLDIDLKNEELTDARKVFMEAYKTALANTVISEELYELYEQ + ARVITTELLNEMDEKIEMYRAKAKALIVSRRDMRVFDDVQRLINQRINHGNIAELAIE + SSKKNIPLIKSIIK" + gene complement(2195627..2196319) + /locus_tag="Ccel_1841" + CDS complement(2195627..2196319) + /locus_tag="Ccel_1841" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + KEGG: hmo:HM1_0052 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL76189.1" + /db_xref="InterPro:IPR014284" + /translation="MTNEELIPKAKQGDKQALQALYDNNIGIMHKLIFRYSVSKQDRD + DFLQECYFVLLNCVKAYKPEREILFISYLGNAIVWMILRKKGQMRKYENNVSLNSKVN + NDTEDVEFIDMLQDSEAEKFVDDIELSFIQSEVQKILTETTDHPVRELIFENLGKQLS + IRYLSKKYNLTERDIHNHINKARDRLKRNHKLRALAEDYGIIAAPVKTNLEELINIFK + AENEWLRQRKII" + gene complement(2196385..2196762) + /locus_tag="Ccel_1842" + CDS complement(2196385..2196762) + /locus_tag="Ccel_1842" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76190.1" + /translation="MNNRLEKYNMKIVEKAVKGFNCKTVMVNDVWAYGVKNIAFEYIP + INDSIPKEIRDGSEENVIKINIDFKDGSISTSFCPEREVCEVLFETDELLIFRIRDID + DYIKQEELTLEFIKMEYESYMNA" + gene complement(2196792..2197046) + /locus_tag="Ccel_1843" + CDS complement(2196792..2197046) + /locus_tag="Ccel_1843" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76191.1" + /translation="MSTSLEIWDIIKPTPKIIAAIKENYNRLIERQNKAADFLDTVQE + QDLYVLEIRLEILEPMAKYIYVLKKWNVVVSDQEIRDGFK" + gene complement(2197043..2197618) + /locus_tag="Ccel_1844" + CDS complement(2197043..2197618) + /locus_tag="Ccel_1844" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76192.1" + /translation="MSILTKSEADRTIKRLQAVFTFHNFGDDGVKVEWMKSIGTLDFK + KCDKLIDQYKKADSKSLPPISLFLQEYWKYENRNKEIISCSCPKCNARGYLTYRHQYE + YKDEQLLSQPFVAHCDCAAGEQFTYNGTQISDHKSEYYVPSASELNLVEEKTPIVSGV + DEIKRQVYRLLGKSLNIQPRISFREQRGRPF" + gene complement(2197596..2198342) + /locus_tag="Ccel_1845" + CDS complement(2197596..2198342) + /locus_tag="Ccel_1845" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbf:CLI_3296 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76193.1" + /translation="MGENGFTVIPNYIFEDENLNKEELLIVITLIRFNNKVKGYAFPS + YKQLKNVSKVKHDKTLINSLNGLVRKGYLKKETVTGIGNKYYILTSKIEELQKCSTFI + SEVPPTSKIEDDLLQKCSTTNTNTNTNTNTNTKYNNTKIFQFIVDNYTTNPDLRNTIN + EFIRFRQGLKKPIKSEYALNLLLKKLDRLADNEQSKIEVLNQSILNSWQGIFTLKEVS + NQKGIQAKSKSTDSNQHILDEIGDEYFDKE" + gene complement(2198355..2198597) + /locus_tag="Ccel_1846" + CDS complement(2198355..2198597) + /locus_tag="Ccel_1846" + /inference="similar to AA sequence:KEGG:CKL_2947" + /note="KEGG: ckl:CKL_2947 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76194.1" + /translation="MATTKMRTVEQTVAYFKENDPQTAVNPTMLRSLLKQGKIKFVKI + GAKYLINVDWFEEWLKNPVMEENIADKNQYGKLRKI" + gene complement(2198601..2198825) + /locus_tag="Ccel_1847" + CDS complement(2198601..2198825) + /locus_tag="Ccel_1847" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding + protein, putative" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76195.1" + /translation="MDIKYKSTEELPISLNSDDVASCLNISKAGAYNLMNSQGFPSLR + IGKRIVVPKEAFLHWMEANTGELSKSKREA" + gene 2198987..2199832 + /locus_tag="Ccel_1848" + CDS 2198987..2199832 + /locus_tag="Ccel_1848" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cdf:CD0846 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76196.1" + /translation="MKNIIYAKNIRASIYKPKKCEIISINGITYIGGSNSIKEYSEAV + LKNSADIEQIISRAMEVEKMIEYDAFSIKEDILLRYIKLGEILDKMGIVDKFYSNSEC + TCMIESLDDLKDDSFEYFTSPENKELIDNSILDFVNDFGLVGVNDIQDYFWGVNSLGE + LDNFTISIIAEPISLIVNDICCFYSFVKHANPEYDMDFDIKVSLYCNQNKVWKSEYVF + KSLWHLIRYSLVSTLTSDGEGLRQCPQCNSWFIPSNPKAEYCSAACRNRYNVYKCRKA + KKENQ" + gene 2199898..2201139 + /locus_tag="Ccel_1849" + CDS 2199898..2201139 + /locus_tag="Ccel_1849" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: ckl:CKL_2943 integrase-related protein" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL76197.1" + /db_xref="InterPro:IPR002104" + /translation="MASIRQRGENSFQVTVSNGYDSKGKKLLKTKTINIDPRLTEKQR + EKELQKQVVLFEEEVKSGSYYEPTKMTMSEFIELWLDKKKNNIESKTHQGYSGLLKGR + VLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHYHRALNAMFGDG + VRWGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTFITLDLVTGL + RRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKITIPKTTSDLL + SIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHPDTLTKTFK + KFIKRNNLPDIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYSHALLSAD + KQAADVMGNLIKKKPQNEKVE" + gene complement(2201311..2201386) + /locus_tag="Ccel_R0046" + /note="tRNA-Thr4" + tRNA complement(2201311..2201386) + /locus_tag="Ccel_R0046" + /product="tRNA-Thr" + gene 2201539..2202585 + /locus_tag="Ccel_1850" + CDS 2201539..2202585 + /locus_tag="Ccel_1850" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76198.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(2202759..2203583) + /locus_tag="Ccel_1851" + CDS complement(2202759..2203583) + /locus_tag="Ccel_1851" + /inference="protein motif:TFAM:TIGR00099" + /note="TIGRFAM: Cof-like hydrolase; HAD-superfamily + hydrolase, subfamily IIB; + PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid + dehalogenase domain protein hydrolase type 3; + KEGG: cac:CAC2941 HAD family phosphatase" + /codon_start=1 + /transl_table=11 + /product="Cof-like hydrolase" + /protein_id="ACL76199.1" + /db_xref="InterPro:IPR000150" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR006379" + /db_xref="InterPro:IPR006380" + /db_xref="InterPro:IPR013200" + /translation="MFDYNKYLLISDLDGTLINSQHFISQENLDAISHFMKYGGSFAV + ATGRTKDNIRPYVRNLVLNGPCILYNGGGIYSFQEERFLETAFLDRNAVENYISYCIN + NCKNMVVEIFTPEMMYIITPDHIVDPYVENEKQVFSRTTLDEVMKMDWIKVLLYDSPE + NLQKAQLAFEEFNLSDKIDSFFSQIFYLELIKKNVSKGFALQRLKNSHLYRDKKIIAV + GDYDNDIEMIRLADVGIAVGNARECVKDAADIVTVSNDENAMREIIFNIIPSLAKK" + gene complement(2203724..2204356) + /locus_tag="Ccel_1852" + CDS complement(2203724..2204356) + /locus_tag="Ccel_1852" + /inference="protein motif:PFAM:PF01258" + /note="PFAM: zinc finger DksA/TraR C4-type; + KEGG: cth:Cthe_0623 TraR/DksA family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TraR/DksA family" + /protein_id="ACL76200.1" + /db_xref="InterPro:IPR000962" + /translation="MDKNQLLHYKDKLLKEAKKADTALEQMRDLDEGEMSNYTPSELS + NYDNHPAELGSELYTLEMNLALKVHEQTKINDIKLALKKIDNGTYGICENCKKKINPA + RLEVMPTARFCMECQEDKEAEEINTPDQQYNEIFDSPFGRKYLNKQEDDEFEGLDQLN + DLLKYGSADTPQDMSGYADYEEFYTNEIDNQGYVEETDKISNQQYKNQLP" + gene complement(2204380..2204682) + /locus_tag="Ccel_1853" + CDS complement(2204380..2204682) + /locus_tag="Ccel_1853" + /inference="similar to AA sequence:KEGG:Teth39_0898" + /note="KEGG: tpd:Teth39_0898 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76201.1" + /translation="MANKNHLFSVLCKKIDNLSLKMEKMKFVDYVYYLEHPRKMLWAN + FVSGLARGFGIAIGFTILGAIAIYFLNIIVKINLPYIGEFISDIVKIVQNSSRNVR" + gene complement(2204858..2205937) + /locus_tag="Ccel_1854" + CDS complement(2204858..2205937) + /locus_tag="Ccel_1854" + /inference="protein motif:PFAM:PF01761" + /note="PFAM: 3-dehydroquinate synthase; + KEGG: cth:Cthe_0786 3-dehydroquinate synthase" + /codon_start=1 + /transl_table=11 + /product="3-dehydroquinate synthase" + /protein_id="ACL76202.1" + /db_xref="InterPro:IPR002658" + /db_xref="InterPro:IPR016037" + /translation="MIRHTINLKERSYPICIATDFQELGKTVLSFRQGNKALLITDEN + VDNYYSDECMKVLQVSGIEVNKHVLKPGESNKTLEAVYGIYNKMVECKLDRSSIVLAL + GGGVVGDIAGFAAATYMRGINFVQIPTTLLAQADSSVGGKTGVDFNGHKNIVGAFYQP + KAVFINVNTIKTLPKREISAGLAEVIKHGLIMDEEYCDYINYNADKIFKFDENVLQYL + AKKNCSIKGYVVEQDEKEDDLRAILNFGHTIGHAIETVENFRLLHGECVSIGIVGVYK + IAQYMEVLSEQLVNQVKEILLKLGLPVSLPGLDVERVYNQIFYDKKVKDNKLKFVLPR + RIGEVFQCTIKDNELIKKVLLDLSN" + gene complement(2205968..2208757) + /locus_tag="Ccel_1855" + CDS complement(2205968..2208757) + /locus_tag="Ccel_1855" + /inference="protein motif:TFAM:TIGR00392" + /note="TIGRFAM: isoleucyl-tRNA synthetase; + KEGG: cth:Cthe_0787 isoleucyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="isoleucyl-tRNA synthetase" + /protein_id="ACL76203.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR002300" + /db_xref="InterPro:IPR002301" + /db_xref="InterPro:IPR010663" + /db_xref="InterPro:IPR013155" + /db_xref="InterPro:IPR015413" + /db_xref="InterPro:IPR015905" + /translation="MAEDYGKSLNLPKTDFPMRANLPQREPEFLKKWEDMDIYNTQLK + KSEGKPSFILHDGPPYANGGIHLGTTLNKVLKDIVVKYKSMSGYYTPYVPGWDTHGLP + IEQRAIKELGLKRHEVGPVVFREACEGFALKYLDVQRESFKRLGVRADWEHPYITLKP + EFEAKQIEVFGEMATKGHIYKGLKPVYWCPECETALAEAEIEYADDTTVSIYVKFQVR + DDKGIFEGVAPKEKVNFVIWTTTTWTLPANLAICLNESFEYSVVKANDEYYVLAAELV + ENTMKAAAVTEYETVAKFKGSQLEGILCKHPFLDKDSIVILGDHVTLEAGTGCVHTAP + GHGAEDFIVCQKYKIPVLVPVDSKGFLTKEAGPFAGMFYKKSNSAIIEKLTQDGRLLA + SEKITHQYPHCWRCKDPIIFRATEQWFASIDGFRQESLKAIKDVKWIPEWGEERITNM + VRDRGDWCISRQRIWGVPIPIFYCKDCGKELITDESIKAVADLFRVKGSNAWYAMDAS + EILPDGIKCKCGNHEFTKETDIMDVWFDSGSSHVAVLENREGLSWPADLYLEGNDQHR + GWFQSSLLTSVATKGTAPYRKVLTHGYVVDGEGRKMSKSLGNGIDPADVIKEYGADIL + RLWVASSDYTTDIRISKDLLKQLSEVYRKIRNTARYILGNINDFNPDTDSVDYNDLNE + LDKWALGRMTNLIKKVNEAYDTYEFHLMFHAIHNFCVVDMSNFYLDIIKDRLYTSKPD + TKERRAAQTVMYEILHNLVRMLTPVLAFTTEEIWQYMPHRAEDDTESVQLNSWPQVNE + KYVNTALSEKWEKIFELRSDVSKALEIARANKTIGHSLNAKVSLYADGENLEFIKSIE + NDLVTIFIVSAVEVKNLADAPADAQKGEEIPEIKVSVEQAPGEKCERCWMFSEFVGND + EKHPTLCKRCADVVG" + gene 2209222..2209725 + /locus_tag="Ccel_1856" + CDS 2209222..2209725 + /locus_tag="Ccel_1856" + /inference="similar to AA sequence:KEGG:CLL_A2183" + /note="KEGG: cbk:CLL_A2183 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76204.1" + /translation="MNFDFAQLISQLKGNKYRRIGSGSCRNVYDLENGYVVKVAKDVR + GILQNQIEHKSYLTHKSVFFAEVAAISENYRYLIMVKAKRITDIRIVLRYYKVKSFDE + LMKNPLLEEDLENHNIGSGDLKRASSWGIVNDVPVLIDYGLNQSTYNKYYRNKLFGRF + RRLNYTS" + gene complement(2209726..2211132) + /locus_tag="Ccel_1857" + CDS complement(2209726..2211132) + /locus_tag="Ccel_1857" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; aminotransferase + class I and II; + KEGG: aoe:Clos_1183 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family with + aminotransferase domain" + /protein_id="ACL76205.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR004839" + /translation="MKIVSIQLKNNGQPKYLQLFNSIKEQISQGEMKPGERLPAIRSL + ASQLGVNTSTVVNAYKQLESNGYITAKKGSGYFISDTKSRIHDTQFSSDLGLYKDASV + INFANATPHPSIFPIESFKACINEVLERDKGFAFGYDESNGYRPLRQSILAYFNREYS + IPVENEDFLQIVSGAQQGIDIIGKALLNPGDYVITESPTYDGAVAAFKSRGARIISVN + MEKDGMDIEELEKKIRICKPKLIYVMTRYQNPTTVCYSQEKLEKLMLLAKENNLYIVE + DDSMSELYFEKEKYMALKVLDKKNEYVIYLKSFSKILMPGLRVGSMVIPKNLIDRFTK + IKHTSDISSSGLIQRSLDLYFRSEKWDEHLQYMKEIYRGRFEFMLAGLDRMGKYGLKY + EKPGGGLYFWVKLPRHLSAEFFYKKCRNNGLVFIPSGIFYDNMTKNCDDYIRLSFASA + GIDQISEGMEILEKCLIN" + gene 2211367..2212245 + /locus_tag="Ccel_1858" + CDS 2211367..2212245 + /locus_tag="Ccel_1858" + /inference="protein motif:TFAM:TIGR00343" + /note="TIGRFAM: pyridoxine biosynthesis protein; + PFAM: Vitamin B6 biosynthesis protein; thiazole + biosynthesis family protein; + KEGG: tex:Teth514_2241 pyridoxine biosynthesis protein" + /codon_start=1 + /transl_table=11 + /product="pyridoxine biosynthesis protein" + /protein_id="ACL76206.1" + /db_xref="InterPro:IPR001852" + /db_xref="InterPro:IPR008867" + /translation="MNERYQLNKNLAQMLKGGVIMDVVNAKEAEIAQKAGAVAVMALE + RVPSDIRKAGGVARMSDPKMIKDIQSAVSIPVMAKVRIGHFVEAQVLEALSIDYIDES + EVLTPADEEFHIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGEAGTGNVVEAVR + HMRTVTNEIRKVQSASKQELMTIAKEFGAPYDLILYVHENGKLPVINFAAGGIATPAD + AALMMQLGCDGVFVGSGIFKSSDPAKRAKAIVKATTYYNDPQIIAEVSEELGTAMDSI + DVRELTGNSLYASRGW" + gene 2212266..2212835 + /locus_tag="Ccel_1859" + CDS 2212266..2212835 + /locus_tag="Ccel_1859" + /inference="protein motif:PFAM:PF01174" + /note="PFAM: SNO glutamine amidotransferase; CobB/CobQ + domain protein glutamine amidotransferase; + KEGG: cbl:CLK_2186 glutamine amidotransferase subunit PdxT + (glutamineamidotransferase glutaminase subunit PdxT)" + /codon_start=1 + /transl_table=11 + /product="SNO glutamine amidotransferase" + /protein_id="ACL76207.1" + /db_xref="InterPro:IPR002161" + /db_xref="InterPro:IPR011698" + /translation="MKKIGVLGLQGAISEHLDKLSKIPNVEPFSLKYKEEIDTIDGLI + IPGGESTAIGRLLSDFNLTEPLKTRVNAGMPVWGTCAGMIILAKTITNDRRRHLEVMD + INVMRNGYGRQLNSFTTEVSLAKVSSDKIPLVFIRAPYVVEVAPNVEVLLRVDENIVA + CRQDNMLATSFHPELTEDLSFHRYFAEMI" + gene complement(2212905..2214464) + /locus_tag="Ccel_1860" + CDS complement(2212905..2214464) + /locus_tag="Ccel_1860" + /inference="protein motif:PFAM:PF01694" + /note="PFAM: Rhomboid family protein; + KEGG: cth:Cthe_1048 rhomboid family protein" + /codon_start=1 + /transl_table=11 + /product="Rhomboid family protein" + /protein_id="ACL76208.1" + /db_xref="InterPro:IPR002610" + /translation="MKSNFLNSLVRYLVEKDYYHLISADNQIPDFSNGIASLIKEIQG + TSVFVEIIDADRYGTEQIRNIMLNGAAMLNNIQGNNAYIFKVFLFDSTPDMDKVEIIK + QHQMDITSEKRFMKCISVNISAKQAEKYFSVPAFDAGLVKSFKRFFSKGLDKRETSYK + DIEDVIEKRKKDFEIQSKAETPWLTYIIIAFNIVMWGLLQLVSMRTGTAYQQQLEPFG + AKVNNLIMEGQYWRFISPMFLHGDIVHLAVNCYSLYIIGSQVEKIFGRGRFLAIYFVS + GFIGSAASFAFSLNSSVGASGAIFGLVGAMLYFSLRRPALLKSSYGVNLITMLIINLA + YGFMNKRIDNHAHIGGFVGGFLTAGAVYSYREINGKNILKKVTSILLVAAITMGMLFY + GFNNDINVLSPKLAALEQSDIQNNWQESEKKAEEILDLNPSDKNTKIRVLWSLIRAEI + GQGKLDEGIQNSMALAELSPADGHYLLGVIYYNTKEFGKAKQELEQAKKSGSPNIDNI + NEMLSGIENSK" + gene complement(2214454..2215758) + /locus_tag="Ccel_1861" + CDS complement(2214454..2215758) + /locus_tag="Ccel_1861" + /inference="protein motif:PFAM:PF02574" + /note="PFAM: homocysteine S-methyltransferase; + KEGG: tex:Teth514_1211 homocysteine S-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="homocysteine S-methyltransferase" + /protein_id="ACL76209.1" + /db_xref="InterPro:IPR003726" + /translation="MSFLNDIEKKVLVFDGSMGIMLQSKGLEVGTCPEEWNITHPEMV + KEIYTAYRDAGANVIQSNTFQSNLMKLSEYGLQDKHYDINFAGVSLAKEVMGDKGYVA + ASIGPLGKLLEPFGELTFEQAYNTFKEQVVAVTAGGADIISFETFTDVSEMRIALLAS + KENCNLPVICSISYEQNGRTLMGSDPAVCACILHSLGADMIGTNCSFGPEYMIKVAES + YGKTGLKFSIKPNAGIPKTVDGNLVYDETPEKFAEYAQEFIKYGARLVGGCCGTRPEF + IAEISKAVSGCDAVSFPLNVDFITSSSKAVAFSDIMGAGIGWIDINKEETLKKELLAG + SISTITDAAMDLMEEDCELIAIDVDVPGENELLLSYVVKEAQTYLKQPFILKSNNPSA + LEAALRIYKGKAGVLTNNSSDVAGIMNKYGAVNVGGFISNEK" + gene complement(2215855..2217519) + /locus_tag="Ccel_1862" + CDS complement(2215855..2217519) + /locus_tag="Ccel_1862" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: csc:Csac_0934 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL76210.1" + /db_xref="InterPro:IPR000873" + /translation="MEKLIEITVGSLLDEMAKRYPDHDCVLYTDRPFRKTYSEFNELC + NKVAKSFLKLGIKKGDHIAIWATNIPEWLITLFASAKIGAILVTVNTNYKVFEVEYLL + KQSDTHTLILMDGFKDSNYIQIINELCPDLKNSEPGNLHNEKLPFLKNIISVSSEKHS + GMFSWEDIVDLGNDISDEELYAISNSLDCHDVINMQYTSGTTGFPKGVMLTHYNIVNN + GRCIGDCMHLTHEDKLCIPVPFFHCFGLVLAIMACVTHGTSMVPVDYYSPLKVMNAIQ + TERCTAVHGVPTMYIAMLEHPDFDKFDFSSLRTGIMSGSPCPVKVMEAVIEKMNMKDI + TIPYGQTESSPVCTQTRIGDSLELRVSSVGRALPFIECKIVDPETNQDLPDGVPGEFV + ARGYNIMKGYYKMPEATAQAIDADGWLHTGDLATRDENGYYKITGRIKDMIIRGGENI + YPKEIEEFLYTLPEIKDVQVIGVPSKVYGEEIMACIILKEGCSLTEEQVKEAVKANMA + RHKTPKYVGFMDSFPMTASGKIQKYKMREKAIADLGLQDDAAIETA" + gene complement(2217877..2218527) + /locus_tag="Ccel_1863" + CDS complement(2217877..2218527) + /locus_tag="Ccel_1863" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: regulatory protein LuxR; response regulator + receiver; Sigma-70 region 4 type 2; + KEGG: cth:Cthe_1267 two component LuxR family + transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, LuxR + family" + /protein_id="ACL76211.1" + /db_xref="InterPro:IPR000792" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR013249" + /translation="MSKIRIMIADDHAMVRQGLKTILELEEDICVVSQASNGEEAVAL + ARRVRPDIILMDINMPVINGLQAIKTLKEETVNYKIIVLTLHQDREYLFKTLQLGCEG + YVLKDAESSVLIEAIRNVYRDQTYIQPNMTGELVKEFNRVTLYEQDKSIINNLTNREV + EVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHNIKV" + gene complement(2218524..2219699) + /locus_tag="Ccel_1864" + CDS complement(2218524..2219699) + /locus_tag="Ccel_1864" + /inference="protein motif:PFAM:PF05384" + /note="PFAM: ATP-binding region ATPase domain protein; + Sensor DegS domain protein; histidine kinase dimerisation + and phosphoacceptor region; + KEGG: cth:Cthe_1268 histidine kinase" + /codon_start=1 + /transl_table=11 + /product="Sensor DegS domain protein" + /protein_id="ACL76212.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008595" + /db_xref="InterPro:IPR011712" + /translation="MRSYKHNSVQMNEIISKTIKSLKSGKNEIIEIAENSRKECKRLE + DELVTLKSQVFEIVSVIENLEHDLKQSKKKLYDVNKDFNSHSQNELAQAYQSADNIRV + ELAVRREQETFLIRRRNDLEIRIRDCLKTLERADSLIGHVGIALDYLSGDLQNVGEQL + DNLQQRQFLGIKIIEAQEEERKRVAREIHDGPAQSMSNIVIKAEICERLLDKDIDEAR + KELQNLKKVMRDSLQEVRKIIYNLRPMALDDLGLLPTLERYVISFREETGIDVQLRSR + AINEEIKSVISLAVFRIVQEALNNVLKHAQAKRVSILLEHVNKKLNIIIVDNGVGFNT + DDVKVIEPESTGGFGLFSMKERVALLEGEVNIVSQVGIGTKIKIHIPLMDEGEDTQK" + gene 2219951..2220026 + /locus_tag="Ccel_R0047" + /note="tRNA-Lys1" + tRNA 2219951..2220026 + /locus_tag="Ccel_R0047" + /product="tRNA-Lys" + gene complement(2220110..2220979) + /locus_tag="Ccel_1865" + CDS complement(2220110..2220979) + /locus_tag="Ccel_1865" + /inference="protein motif:PFAM:PF03781" + /note="PFAM: protein of unknown function DUF323; + KEGG: cbe:Cbei_3040 protein of unknown function DUF323" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF323" + /protein_id="ACL76213.1" + /db_xref="InterPro:IPR005532" + /translation="MKKLLIFLLITTMISISACSQEKTSTAEGVDKKEIADNFVLVKG + GNFKNKKSQLYGKNVKISDFYIGKYEVTQKEWKDIMEGNPSQYKGDSLPVEMVNWYEC + IEYCNKRSIKEGLEPYYNIDKNKKDPNNKSDIDDIKWTVTINAEANGYRLPTEVEWEY + AAGGGQDSKNYTYSGSNYVDEVAWYWVNSGDKKLDGDWYWPKIESNKNQTKPIGSKKP + NELGLYDMSGNVREWCWNWYGDALNSQSGAARVWRGGCWLSDDHACESSYRGKFDANG + MGYDHGFRLCRNK" + gene complement(2221290..2221928) + /locus_tag="Ccel_1866" + CDS complement(2221290..2221928) + /locus_tag="Ccel_1866" + /inference="protein motif:PFAM:PF00457" + /note="PFAM: glycoside hydrolase family 11; + KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 11" + /protein_id="ACL76214.1" + /db_xref="InterPro:IPR001137" + /translation="MGKFNKKVLALIFAVSMSVTSLFAGTTYAATDYWQNWTDGGGTV + NVTNGSGGNYSVNWYNCGNFVVGKGWNYGTANRVCNYNAGVFSPSGNGYLCFYGWTRN + SLIEYYIVDSWGSYRPTGTYKGSVSSDGGTYDIYTTQRWNAPSIDGTQNFTQYWSVRQ + SKRPTGQNVQINFGNHVNAWRSKGMNLGYNWSYQALCVEGYQSSGSANVTVW" + gene 2222891..2222966 + /locus_tag="Ccel_R0048" + /note="tRNA-Lys2" + tRNA 2222891..2222966 + /locus_tag="Ccel_R0048" + /product="tRNA-Lys" + gene complement(2223015..2223257) + /locus_tag="Ccel_1867" + CDS complement(2223015..2223257) + /locus_tag="Ccel_1867" + /inference="protein motif:PFAM:PF01541" + /note="PFAM: Excinuclease ABC C subunit domain protein; + KEGG: cbt:CLH_0313 GIY-YIG domain protein" + /codon_start=1 + /transl_table=11 + /product="Excinuclease ABC C subunit domain protein" + /protein_id="ACL76215.1" + /db_xref="InterPro:IPR000305" + /translation="MYYVYILQCSDKTFYTGYTDNIEKRIKVHNQGKGAKYTRARLPV + TLAYYEEAETKSQALSREYSIKRMTRREKETLISHK" + gene complement(2223261..2223908) + /locus_tag="Ccel_1868" + CDS complement(2223261..2223908) + /locus_tag="Ccel_1868" + /inference="protein motif:PFAM:PF04199" + /note="PFAM: cyclase family protein; + KEGG: amt:Amet_4419 cyclase family protein" + /codon_start=1 + /transl_table=11 + /product="cyclase family protein" + /protein_id="ACL76216.1" + /db_xref="InterPro:IPR000169" + /db_xref="InterPro:IPR007325" + /translation="MYLIDLSHEIVENMPVYPGDDSVRLGQTHKYSKDHYNNHWLETG + MHVGTHVDGAMHMTDVCEYICNYPLEKFYGSACVIHTYGKSVLEAESSHTEVLKDKSI + VLVHTGMDRFYGQETYYKDHPVLGMSFCEMLVNHGIKLVGIDAPSPDRLPFEIHKYLL + GNNILLLENLTNMDKIPAAVDFEVMAFPLKIRADSCMVRAVAKVMDKNNFSRGDY" + gene complement(2224082..2224621) + /locus_tag="Ccel_1869" + CDS complement(2224082..2224621) + /locus_tag="Ccel_1869" + /inference="protein motif:PFAM:PF02915" + /note="PFAM: Rubrerythrin; + KEGG: cbk:CLL_A1055 rubrerythrin" + /codon_start=1 + /transl_table=11 + /product="Rubrerythrin" + /protein_id="ACL76217.1" + /db_xref="InterPro:IPR003251" + /db_xref="InterPro:IPR004039" + /db_xref="InterPro:IPR009040" + /translation="MSNLKGTKTEANLMAAFAGESQARNKYTYYASKAKKEGYEQIAA + LFTETANNEKEHAKIWFKLLHDGIGDTAANLKDAANGEHYEWTDMYVQFAKEAKEEGF + DKIAYLFEAVGKIEKEHEERYLALLKNVEGNSVFIKEEKVVWQCANCGHIHEGEQAPQ + ICPVCDHPQAYFQILAKNY" + gene 2224850..2225329 + /locus_tag="Ccel_1870" + CDS 2224850..2225329 + /locus_tag="Ccel_1870" + /inference="protein motif:PFAM:PF03061" + /note="PFAM: thioesterase superfamily protein; + KEGG: cpy:Cphy_2327 thioesterase superfamily protein" + /codon_start=1 + /transl_table=11 + /product="thioesterase superfamily protein" + /protein_id="ACL76218.1" + /db_xref="InterPro:IPR006683" + /translation="MQKPSSKKVSDSRTEQIQILMPEHINGFNRLFGGKLMEWIDVVA + AVVARRHSGCNVTTASIDNLQFKAAAYVNSTIFLLGQITYVGNTSMEVRVDTFVEELN + GIRRMINRAYLVLVALDENDLPVSVPGIILETDEEKVEWEAARKRCELRKQRRREEF" + gene complement(2225337..2225786) + /locus_tag="Ccel_1871" + CDS complement(2225337..2225786) + /locus_tag="Ccel_1871" + /inference="similar to AA sequence:KEGG:Cbei_3616" + /note="KEGG: cbe:Cbei_3616 transcriptional regulator, XRE + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL76219.1" + /translation="MNLEHNDVVNFLIKAKKATYAGKGPELLPSRPQSHDLLYEEGHL + KYIDTYIGGTAFSGEEAMWYQEIPFWSMNYCGRVIAEGFSGDFLKEALLNIPFEKPFR + GPEKYKRDDLLYTSKVHGDFLWFFGMEEIYFHDVKVYECRFHGGSIK" + gene 2226072..2226806 + /locus_tag="Ccel_1872" + CDS 2226072..2226806 + /locus_tag="Ccel_1872" + /inference="protein motif:PFAM:PF02146" + /note="PFAM: Silent information regulator protein Sir2; + KEGG: cbk:CLL_A3387 NAD-dependent deacetylase" + /codon_start=1 + /transl_table=11 + /product="Silent information regulator protein Sir2" + /protein_id="ACL76220.1" + /db_xref="InterPro:IPR003000" + /translation="MNIELLTDILKNADSIVFFGGAGMSTESGIPDFRSENGLYVTTD + GSEYPPETMLSHSFFVSHNDDFFKFYRTKMIFRDAKPNAGHLALAKLEETDRLKAVIT + QNIDGLHQLAGSKIVYELHGSVHRNYCTKCRTFYDLDYIVNAKGTPRCIKCSSVIKPD + VVLYEESLDDDVVSGAIDAIRNADVLVIGGTSLVVYPAAGLIDYFKGKKLVLVNKSST + PYDSRADLVIHDSVGKVLGTAVESLL" + gene complement(2226813..2227205) + /locus_tag="Ccel_1873" + CDS complement(2226813..2227205) + /locus_tag="Ccel_1873" + /inference="protein motif:TFAM:TIGR00494" + /note="TIGRFAM: CrcB protein; + PFAM: Camphor resistance CrcB protein; + KEGG: cbe:Cbei_4956 CrcB protein" + /codon_start=1 + /transl_table=11 + /product="CrcB protein" + /protein_id="ACL76221.1" + /db_xref="InterPro:IPR003691" + /translation="MKEMINVVAVGTGGFVGAASRYFISTLVNKLNTSGFPIATLIIN + ILGSFLIGLLTQLLMSLCPDNKKLNLFLTTGILGGFTTFSTFSLETVNLFQGGKAVFG + VVNIVLSIAFCLTGVVLGKMLAKTIASM" + gene complement(2227334..2227411) + /locus_tag="Ccel_R0049" + /note="tRNA-Pro3" + tRNA complement(2227334..2227411) + /locus_tag="Ccel_R0049" + /product="tRNA-Pro" + gene complement(2227519..2227746) + /locus_tag="Ccel_1874" + CDS complement(2227519..2227746) + /locus_tag="Ccel_1874" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76222.1" + /translation="MVEFCKCGSMMVNGNCSNKHCSTNLGKLLKAKAKKAARTKTTTA + AAPSTTPKSTKTPKASKCITYNISELNLKED" + gene complement(2228130..2228300) + /locus_tag="Ccel_1875" + CDS complement(2228130..2228300) + /locus_tag="Ccel_1875" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76223.1" + /translation="MDDKTKRIITIIVAIFLLIMAISIVGFILKKLIPLAIIVIAGYI + VYRLVSKKGQKY" + gene complement(2228426..2229571) + /locus_tag="Ccel_1876" + CDS complement(2228426..2229571) + /locus_tag="Ccel_1876" + /inference="protein motif:TFAM:TIGR01977" + /note="TIGRFAM: cysteine desulfurase family protein; + PFAM: aminotransferase class V; + KEGG: cth:Cthe_0655 cysteine desulfurase family protein" + /codon_start=1 + /transl_table=11 + /product="cysteine desulfurase family protein" + /protein_id="ACL76224.1" + /db_xref="InterPro:IPR000192" + /db_xref="InterPro:IPR010969" + /translation="MIYIDNAATSFPKPEAVYMEMDKCLRTYCANPGRGSHTMSVASA + STVTTTRERIAKLLKIEDSLSISFTKNATEALNIAICGSLSPGDHVITTCMEHNSVIR + PLKTLEKYGKTKLTIVNGDSLGRVDPQSIRKSINKRTKLIVCTLSSNVNGIIMPVEEI + GKIARDNGIIYLIDASQGIGSINMDISQIHADMLAFPGHKGLLGPQGTGGLYVSPKIK + LRPLMRGGTGSRSELLLQPDIMPDKLESGTLNTPGIAGLGAGLGFIQKNGIESIRKKK + DELTIRLFEGIRRINNIKMFSSGNAYENSGIVAFNLDGMDSTEVSYQLDKQYKIECRP + GLHCAPLAHAHFKTLNSGIIRLSVGCFNTNEEIDFVIQSINMIAKGH" + gene 2229916..2230986 + /locus_tag="Ccel_1877" + CDS 2229916..2230986 + /locus_tag="Ccel_1877" + /inference="protein motif:TFAM:TIGR01123" + /note="TIGRFAM: branched-chain amino acid + aminotransferase; + PFAM: aminotransferase class IV; + KEGG: cth:Cthe_0856 branched chain amino acid + aminotransferase" + /codon_start=1 + /transl_table=11 + /product="branched-chain amino acid aminotransferase" + /protein_id="ACL76225.1" + /db_xref="InterPro:IPR001544" + /db_xref="InterPro:IPR005786" + /translation="MKMNISITKTKNPKQKPDQNNLGFGTYFTDHMFIMDYTEGKGWH + DPRIVPYAPLEMDPASMVFHYGQAIFEGLKAYKAKNGHILLFRPEKNMARVNSSNDRL + VIPRIDEDFGVQAIKELVNVDSDWIPDAPGTSLYIRPFIIATDPFLGVRPSDTYKFII + ILSPVGAYYKEGINPVKIYVESKYVRAVKGGLGFAKTVANYASSLKAQVEAKHSGYTQ + VLWLDGVEKKYIEEVGTMNVFFKIDGEVITPSLEGSILPGITRMSTIELLKKSGIKVT + ERRISIQELYDAHAAGKLDEAFGTGTAAVISPIGEFSWGEKVITVSNGKIGPVAQKVY + DTITGIQNGELEDTFGWTQIVK" + gene 2231102..2232376 + /locus_tag="Ccel_1878" + CDS 2231102..2232376 + /locus_tag="Ccel_1878" + /inference="protein motif:TFAM:TIGR02871" + /note="TIGRFAM: sporulation integral membrane protein + YlbJ; + PFAM: nucleoside recognition domain protein; + KEGG: cth:Cthe_1274 nucleoside recognition" + /codon_start=1 + /transl_table=11 + /product="sporulation integral membrane protein YlbJ" + /protein_id="ACL76226.1" + /db_xref="InterPro:IPR011642" + /db_xref="InterPro:IPR014226" + /translation="MNYFLFTSFIAFCLTFYFCNKNKIVLYIKKSFLPICAILFIIAL + IVFPKTAVSSAVKGIHLWLEVVFPSLFPFFVASQLLNRSGFIGFAGVIMEPIMRPIFN + IPGCGSFALAMGIVSGYPIGASITSDLKRQNLISKTEAERLLTFTNNSGPLFIMGAVA + VGMFNMPSAGYLLYISHVAASLTVGFIFRYYKTSEKSPKKPYLKLSQKIKIELKRLKN + SDMNTFTLFGECIKNSISTILAIGGFIIFFSVLINIMISSGISGWVCSTVPALLGKLG + LGPQILEGMFCGFFEITTGANLINSANAPLVIKLCTVSMIIGWAGLSVHAQVLSVING + SNISAKPYIVGKALQGILSGLYTFTGYKLFSSFIHKTSLVFANSKNSFSNNWMNILES + SLHSVLSISAIMLIITAVYLCTTTFMARKNLF" + gene complement(2232368..2232805) + /locus_tag="Ccel_1879" + CDS complement(2232368..2232805) + /locus_tag="Ccel_1879" + /inference="similar to AA sequence:KEGG:Cthe_1275" + /note="KEGG: cth:Cthe_1275 H+-ATPase subunit H" + /codon_start=1 + /transl_table=11 + /product="H+-ATPase subunit H" + /protein_id="ACL76227.1" + /translation="MEILTILETLEELVEKSPSVPFSGKCLLDREEILEIIKEMRLKL + PDDIKQAKWVKEERQRILLEAQREANNIMKDAENKIASLVDEHEITKKAYEQSNEIIA + AAQKNAREVRLGAREYADGVLNKVEDILTEAAEVIRTNREELK" + gene complement(2232824..2233306) + /locus_tag="Ccel_1880" + CDS complement(2232824..2233306) + /locus_tag="Ccel_1880" + /inference="protein motif:TFAM:TIGR01510" + /note="TIGRFAM: pantetheine-phosphate adenylyltransferase; + cytidyltransferase-related domain protein; + PFAM: cytidylyltransferase; + KEGG: cth:Cthe_1276 phosphopantetheine + adenylyltransferase" + /codon_start=1 + /transl_table=11 + /product="pantetheine-phosphate adenylyltransferase" + /protein_id="ACL76228.1" + /db_xref="InterPro:IPR001980" + /db_xref="InterPro:IPR004820" + /db_xref="InterPro:IPR004821" + /translation="MNKFIYPGSFDPVTNGHLDIIERASKICDKLTVAVLINQSKNPL + FSIEERVSLLKKVVKGSTNIEIECFSGLLVDFVKEKNANVIIKGLRAVSDFEYELQMA + LLNKNQAPDIETLFMMSSINYSFLSSSMVKELARHGGNISGLVPECIEKEIIDKFKLK + " + gene complement(2233327..2233890) + /locus_tag="Ccel_1881" + CDS complement(2233327..2233890) + /locus_tag="Ccel_1881" + /inference="protein motif:TFAM:TIGR00095" + /note="TIGRFAM: methyltransferase; + PFAM: Protein of unknown function methylase putative; + KEGG: cth:Cthe_1277 putative methyltransferase" + /codon_start=1 + /transl_table=11 + /product="methyltransferase" + /protein_id="ACL76229.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR004398" + /db_xref="InterPro:IPR016065" + /translation="MINILRVISGSVKGLKLFTLEGMNTRPTTDRVKENLFNIIAPYI + PGSNVLDLFAGTGSLGIEALSRGANSAVFCDQNKQSIDIIKKNLQHTKLTEKSEVFLG + EAQLMLKKLSQLSKKFDIIFLDPPYLKKIVPGILQKLEHYGVLDEKFIISVETDIEDQ + LPQETETLCVSRQLIYGKTKLTFYKRI" + gene complement(2233902..2235971) + /locus_tag="Ccel_1882" + CDS complement(2233902..2235971) + /locus_tag="Ccel_1882" + /inference="protein motif:TFAM:TIGR00643" + /note="KEGG: cth:Cthe_1278 ATP-dependent DNA helicase + RecG; + TIGRFAM: ATP-dependent DNA helicase RecG; + PFAM: helicase domain protein; nucleic acid binding + OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain + protein; + SMART: DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent DNA helicase RecG" + /protein_id="ACL76230.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR004609" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MKKITISDLKKKSIRYIKGVGELRESLFKKLGINNIFDLITYYP + RDYEDRSSIKNIADLQNGVPCSFEGTIVSNVSVTRPRKGLTLSKVSIEDSTGKITAIW + FNQPYVKNSLAIGENYIFFGKADRKLNKLQIVNPVFEKSSLKDMKKSLKILPVYSSTK + DLGQNTIRTVVNEAIKGIEDFELEDMIPDAVREIHNLADKTYAIKQIHFPASAQDMER + ARFRLAFEELFMLQLGLLSYKSLATCTRVGIKYTHIEMESFVKSLPFQLTNAQKKVFM + EVEKDMESSHIMNRLVQGDVGSGKTVIAVLALFKAVKCGYQGALMVPTEILAEQHYKS + IRSLFDSFGISVQLLSSSLTKKQKQLIVEELKEGKTDVVIGTHALIEDYIQFKQLGLV + ITDEQHRFGVRQRTILTEKGQNPDVLVMTATPIPRTLALILYGDLDISIIDELPPGRK + PIKTYSVNESMRERINKFVRDKVKEGRQIYIVCPLVEESEEIEAKSAVVTADDISKSV + FSDLNVGIIHGKMKSSEKEDIMKKFVSGEINILVSTTIIEVGVNVPNATLMIIENAER + FGLAQLHQLRGRVGRGDEQSFCILFNQSNSKVSRERMKTMTQSTDGFVISEKDLEIRG + PGEFFGTRQHGLPELKIANLYKDMDILKLAQNSAIEIIEADPGLLEHEVLKKYLSMYF + GDKVTLS" + gene 2236238..2236426 + /locus_tag="Ccel_1883" + CDS 2236238..2236426 + /locus_tag="Ccel_1883" + /inference="protein motif:PFAM:PF00830" + /note="PFAM: ribosomal protein L28; + KEGG: cth:Cthe_1279 50S ribosomal protein L28P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L28" + /protein_id="ACL76231.1" + /db_xref="InterPro:IPR001383" + /translation="MAKCEVCSKATSFGNSRSHALNATSRTWKPNVRKIKIIDNGTPR + SIKICTRCLRSNKVTRAI" + gene 2236769..2237449 + /locus_tag="Ccel_1884" + CDS 2236769..2237449 + /locus_tag="Ccel_1884" + /inference="similar to AA sequence:KEGG:Cthe_1281" + /note="KEGG: cth:Cthe_1281 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76232.1" + /translation="MYSLFHKNHRKNVLMLLAFFVLLAGIIFFASVFFYENSCYTITV + NSQISFSYPVNFSIKNVYASDPASAPYIQASNSKYKNFINYKSPEDNFHFSYPSNFKL + HQQAFPGSEILYHVDFQNKKDNSFTGFVQVWNLPYELSKFLEESKENSLSEFTNFNSK + EIEVNKMKGYFWDYTVKGAKENYKSLEAFLVKDSRLYRISFYIPEKNYTVEDYDMFWK + MVNSLKVN" + gene complement(2237446..2239122) + /locus_tag="Ccel_1885" + CDS complement(2237446..2239122) + /locus_tag="Ccel_1885" + /inference="protein motif:TFAM:TIGR00254" + /note="KEGG: cth:Cthe_1282 diguanylate cyclase with GAF + sensor; + TIGRFAM: diguanylate cyclase; + PFAM: GGDEF domain containing protein; + SMART: GAF domain protein" + /codon_start=1 + /transl_table=11 + /product="diguanylate cyclase with GAF sensor" + /protein_id="ACL76233.1" + /db_xref="InterPro:IPR000160" + /db_xref="InterPro:IPR003018" + /translation="MDKIQKYEKVLINLYWVFIVLLFSALIFKQELYTEANVMFSKKI + FLIVFLILILALNIVKTIFVKNIRLYSDKIFDVFRIIEVFLISVFLLPFSDGIEYLSL + VLPLFFITIHKGKKASYILLALSAVIKLINLIVLYSVQESFDTTQLVYGVFKIACIYI + LFIAIFNITAKIYSGNLKNEQENDRLIAELGEKYEQLASAQDKIKNQYEKLKETNFKL + EDTNKRLTSSIAEFYTLQQVSEAIGSILDINELLNFVNDVIIGVMGVNYSTIVLFDQK + KNRLKVQFTNITNKEELAILTDNVNCELLLDILQNEKPIIENMVDPDKYDFIKTRNIG + SFMCIPLSLKSRKFGLTLIEHRNNNTFNTENLRLLTTLGKQVSMAIENAQLYANLQEM + ATVDGLTGVYNRVYFHEKFENEFRMAKEKGYNLSLVILDIDFFKIFNDTYGHLFGDVV + LKEVAQTVKNNLRGTDTIARFGGEEFVLILPRTSIQQAHEKVEFLRTRIAGNIIKDNL + ISASVTASFGIACYPETSSNQVGLIRDADNALYKAKESGRNCIMIAQKVS" + gene complement(2239140..2241266) + /locus_tag="Ccel_1886" + CDS complement(2239140..2241266) + /locus_tag="Ccel_1886" + /inference="protein motif:PFAM:PF02491" + /note="PFAM: cell division protein FtsA; + KEGG: cno:NT01CX_1629 cell division protein FtsA" + /codon_start=1 + /transl_table=11 + /product="cell division protein FtsA" + /protein_id="ACL76234.1" + /db_xref="InterPro:IPR003494" + /db_xref="InterPro:IPR013126" + /translation="MPGKQKITKNKVETYNEEDLIFALDIGTRTVIGIVGIYEKEYFK + VVAAEVCEHKSRAMLDGQIHDIEKVAEVITQVKERLEKTIGLSLTNVAIAAAGRVLKT + SQTKLEYEIEQGREITSDIVGSLEVDAIQNAQYKLDNEISNEDKMTFYCVGYSVVNYF + LNGYVISSLEGHKGKKIGVEVLATFLPHVVVDSLYTVMSKVGLEVISLTLEPIAAINV + TIPKDLRLLNLILVDIGAGTSDIAVTRDGSVVAYGMVPIAGDEITEKIAQEFLVDFNT + AEKIKISISSGVENIKYTDILGNKYEVTHQKSIEIIKPAIDFLAGSICDKIMEFNQKA + PNAVFLIGGGSQIPGLTSRMAEILGLAENRVAVRGRDVIQNIKTKIKKLSGPESITPF + GIAMMAHMQRGQDFMTVTVNDNEVKLFNSKKLGVADALILLGFNPDKLIGRSGKSLKF + TLNGKDMIVKGEHGMAAQIFVNNELASLDTRIFNNDSIYIKSSYNGSDAKKKVVDYIK + NTKGRTVFLNDDRIELVPYCSINGQVCSINTDIKNGDKVQIEEIVTLKDFVTKFELGL + NSSLLRVNGEIGSQEYILNDNDRITDWTHEESDETAAFEQGREVQENYKTDYVPTNQF + EQDYKENNIVPVPVKGFIINVNGERIELKENRQYIFVDVFNYINFDLSVPKGNIVLKL + NGKPANFTDVISPGDNIEIYWENMQV" + gene complement(2241300..2241932) + /locus_tag="Ccel_1887" + CDS complement(2241300..2241932) + /locus_tag="Ccel_1887" + /inference="protein motif:TFAM:TIGR01083" + /note="KEGG: cth:Cthe_1283 DNA-(apurinic or apyrimidinic + site) lyase / endonuclease III; + TIGRFAM: endonuclease III; + PFAM: HhH-GPD family protein; Endonuclease III/Nth; + SMART: iron-sulfur cluster loop" + /codon_start=1 + /transl_table=11 + /product="endonuclease III" + /protein_id="ACL76235.1" + /db_xref="InterPro:IPR003265" + /db_xref="InterPro:IPR003651" + /db_xref="InterPro:IPR004035" + /db_xref="InterPro:IPR005759" + /translation="MNKKEKALQMIEVLDKLYPDAECSLNYENPLQLLISTQLAAQCT + DARVNIVAKDLYKKYPTVEAFANADISELEEDIKSTGFYRNKAKNIIGCCKIIVEKYN + GTIPDNMKELLELPGVGRKTANLYLYEIHGKQGIVVDTHAKRLSNRTGLTKHEDPEKI + EYDLQKVIPESRWADFCHKLVFHGRAVCNARKPGCDKCEINHLCSYYTKK" + gene complement(2241950..2243422) + /locus_tag="Ccel_1888" + CDS complement(2241950..2243422) + /locus_tag="Ccel_1888" + /inference="protein motif:TFAM:TIGR02095" + /note="TIGRFAM: glycogen/starch synthase, ADP-glucose + type; + PFAM: glycosyl transferase group 1; Starch synthase + catalytic domain protein; + KEGG: cth:Cthe_1284 glycogen/starch synthases, ADP-glucose + type" + /codon_start=1 + /transl_table=11 + /product="glycogen/starch synthase, ADP-glucose type" + /protein_id="ACL76236.1" + /db_xref="InterPro:IPR001296" + /db_xref="InterPro:IPR011835" + /db_xref="InterPro:IPR013534" + /translation="MDLSNKKLKVLFVSAEVDPFAKTGGLADVAGSLPKELTLLGQDV + RVLMPRYKSIDTELTYAADFPVEMGERKETCIIKEGFMPVSGSKEVKVYFLENYHYFY + RDSIYCYSDDAQRFILLCKAALEMLPYIDFKPDIIHCNDWHTGPLCLLLKEKYVKQDF + YKDIATVYTIHNLEYQGNFSADTCSFLNVDEEFFTYEKAEFYGMFSFMKCGLVHSDII + NTVSQQYAREILSTAYGEKMEGILNQRKKDLFGIVNGISYEEFNPEKNEELYAVYNSE + SVWNKKENKRKFQEEFGLAKSDAPLLAVITRLTQQKGLELILGCIDSLIKEKDIQLAV + LGIGDEYYHNAFKNFEKNYPDNVAVFLEFNPILAKKIYASADMFLMPSRFEPCGLGQI + ISFRYGTIPVVRATGGLAETVIDYDRDSKNGNGFSFFDFNRREFEDTLNRAIHVYNEK + PKEWEALVIKALESDFSWKKPCLKYLELYKLALEIKKHIQ" + gene complement(2243441..2244904) + /locus_tag="Ccel_1889" + CDS complement(2243441..2244904) + /locus_tag="Ccel_1889" + /inference="protein motif:PFAM:PF01966" + /note="PFAM: GAF domain protein; metal-dependent + phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region; + KEGG: cth:Cthe_1285 metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL76237.1" + /db_xref="InterPro:IPR003018" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /translation="MNLSKYYLHLVKIIICVIALPCFIYGIFTNTLTPLAVSSCLGIV + LLAYDICRFIIDRRNRKNTKKYGSLQPKENILNSAAGKSHFRTLKLLVEKQNQLEALS + ITSEKFNSTIEIENIIKYVFDVFKKFTGCDRCLICFRDVDSQDIYCKYELGDINYGEV + GKYFDEDSVITQCFNTNSVVVKCGIKIKKRSIVGDKLAIPLNISDEQLGVIFLETKNK + ETFKKVNLIFLQSLANYAAVAMYKSQLINDVYIQKQEIEALYEETAAVNDDLNHNIES + LNKAKDELRQKNEELLKYSESLNTGYIQTVMSLVHAIEAKDAYTSGHCQRVMEISCEI + ATRMNLDEDTIQDLRYAAILHDIGKIGVSASILNKTGKLTDGEFEEIRKHPQISYNIL + KNVEFLRNGLRAILEHHEKYNGGGYPNGLKGEEISLLGRILCIADAFDAMTSDRTYRR + GMTMEVAINEIERCKGIQFDPRISDLFINMIKELINN" + gene complement(2245123..2246688) + /locus_tag="Ccel_1890" + CDS complement(2245123..2246688) + /locus_tag="Ccel_1890" + /inference="protein motif:PFAM:PF00089" + /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; + SMART: PDZ/DHR/GLGF domain protein; + KEGG: cth:Cthe_1286 peptidase S1 and S6, chymotrypsin/Hap" + /codon_start=1 + /transl_table=11 + /product="peptidase S1 and S6 chymotrypsin/Hap" + /protein_id="ACL76238.1" + /db_xref="InterPro:IPR001254" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR001940" + /translation="MIDDRDDKINENGSSIDQPQNDNGTYEANSNSESQESVNQTQED + IQNGSSWQYETVTPVSENKEPVDNVVGENTSQDTVTDNYNLDPQESQTETQDANKSGF + GEDCNLETQVEPNSVYNNYYRENCKKTNTKKSNAWKYVLVSAVSSLVGAALLALLMLF + VAPFVQPQIKSYLGNNFPGLKTESTQPNTGELKRVEIVQSGESAVTSVAEKVGPSVVG + IKTSYQNTNELFGVQSGGGEGSGIIISADGYILTNHHVIEGALNDKTRNIRSDAKIEV + FLPNKIDKPYSAIVKGYDAKTDLAVLKINDTNLPVIEFGNSNDIKIGEPAIAVGNPGG + LEYMGSVTYGVISGLNRTVQLDGGKRIRLLQTDAAINPGNSGGALVNIKGQLIGVNTV + KMVATGFEGLGFAIPVNEAKTIADELITKTYIAKPYLGISVNTQYTEDIAKANNMPAG + VYVADVELFGAAAKAGIMPGDVITKFNNKVIKSYDELEDTKNKMKPGDVVKIEIFRDG + STKTVQAKLGETK" + gene complement(2246760..2248286) + /locus_tag="Ccel_1891" + CDS complement(2246760..2248286) + /locus_tag="Ccel_1891" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cth:Cthe_1287 periplasmic sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76239.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MARFKKTIFQKLVVVFIGLLVLSYVVTGGFLYYFLNGFVTKQET + ETLVESAENIRDFFYKYYLPNKNNKLVQEIFRQTLEMYSVSSNSIIWIVDYTGHILIS + VSNDDQINNVLKQYIDDSGYPKLPDIRQYIRVMNNGGKIRTETGNFFGFFNNEPFKKY + GSSWLTIQMPFDVIPINGREQTIAAVYLHTPVPAIQKVRTSVFSLFLISGGVAISLAI + ILVYIFSIRFTRPLKQINNAAKIIAGGDFQKRLVVSSQDEIGQLAESFNNMVEDLQRL + EELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPPEKQRGYLTIVRDETNRLNRLVN + DLLDLARMESGELTLSMKPFDINELIRICVIKLETLITSKNLQIEANFDVDSMMVLAD + KDSIERVIINLLHNAVKFSNENGKIIVETAKNKEKVFISVKDNGIGIDSDDKKRIWDR + FYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDILLESDVGKGTKFTFTLDYYKSHIED + " + gene complement(2248286..2248972) + /locus_tag="Ccel_1892" + CDS complement(2248286..2248972) + /locus_tag="Ccel_1892" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cth:Cthe_1288 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76240.1" + /db_xref="InterPro:IPR000568" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MSSKSKVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTF + KIQTPSLVVLDIMLPGIDGWQVCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYM + VKPFEPKELVARVKAVLRRYEYKEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKEL + ELLFFLASNPNKVFTREQLLERVWGFDFYGDSRTVDVHVKRVREKIDLEGQPWQLKTV + WGVGYKFEVK" + gene complement(2249189..2249524) + /locus_tag="Ccel_1893" + CDS complement(2249189..2249524) + /locus_tag="Ccel_1893" + /inference="protein motif:PFAM:PF08239" + /note="PFAM: SH3 type 3 domain protein; + KEGG: tel:tll0075 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SH3 type 3 domain protein" + /protein_id="ACL76241.1" + /db_xref="InterPro:IPR013247" + /translation="MLRKKICVGLVAGVLSLSLILGQGVVCAADINISSNIENGITRT + LSAYRVTGNGVRLRAEPNTSSTILGLLYFPEIIQVERWSSDGAWVYARTESGVWGWVS + TAYIEMAVY" + gene complement(2249691..2250536) + /locus_tag="Ccel_1894" + CDS complement(2249691..2250536) + /locus_tag="Ccel_1894" + /inference="protein motif:TFAM:TIGR02875" + /note="TIGRFAM: sporulation transcription factor Spo0A; + PFAM: response regulator receiver; Sporulation initiation + factor Spo0A; + KEGG: cth:Cthe_0812 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="sporulation transcriptional activator Spo0A" + /protein_id="ACL76242.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR012052" + /db_xref="InterPro:IPR014879" + /translation="MSSKKIEVLIADDNREFGDILCEYLSNQEDIEVVGLARDGFEAV + DLILQNTPDIAILDIIMPHLDGLGVLEKIASSNLEKKPLFIVLSAVGQDKITQRALSL + GAEYYIVKPFDMDVLVSRIRQLKDNTYLSSASTSTSMNSSISQHKSDTFITEKKPAHI + NNTSRSLEVEVTNVMHEIGVPAHIKGYQYLRDAIMMVVKDLDVINSITKLLYPSIAKE + YNTTPSRVERAIRHAIEVAWSRGQVEAIDALFGYTVNIGKGKPTNSEFIAMIADKLRL + ELKVS" + gene complement(2250813..2252138) + /locus_tag="Ccel_1895" + CDS complement(2250813..2252138) + /locus_tag="Ccel_1895" + /inference="protein motif:TFAM:TIGR02860" + /note="KEGG: cth:Cthe_0813 SpoIVB peptidase; + TIGRFAM: stage IV sporulation protein B; + PFAM: peptidase S55 SpoIVB; + SMART: PDZ/DHR/GLGF domain protein" + /codon_start=1 + /transl_table=11 + /product="stage IV sporulation protein B" + /protein_id="ACL76243.1" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR008763" + /db_xref="InterPro:IPR014219" + /translation="MHYIKSNKKKLYVLLFVCFCVITLSYLQAFSVIPEKLILLEGEE + YIYNFRSFYFVNIKADNRAVLKLNNTDIKAKGNYLELISPLSFKTEKRGSVKLNFKAF + GVIPLKTMQVDIIPSKRLAACGNTIGVKIKMDGILVIGLSEVDKPDGSKSAPAKDGGI + KTGDVIFEINNKKLSGIKDLIAQIDYSKGDKLTIKFKRGNELMSTTISPIEGVNDKKY + HIGLWVRDSTAGIGTMTFYDPQTHGFGALGHGITDADTGTLMPVISGEIMESNIISVR + KGEHGTPGELKGIFMENKAPLGNIFTNAECGIYGQMYEDIHIAKNRLYQIGLRGQVKV + GPATILSNIEGNKIEEFNIMIEKVSRQSFSGPKGMVLKVTDKKLLNTTGGIVQGMSGS + PIIQNGKLVGAVTHVLVNDPTRGYGIFIEWMLKNISESSEKLGQQRTAG" + gene complement(2252369..2254072) + /locus_tag="Ccel_1896" + CDS complement(2252369..2254072) + /locus_tag="Ccel_1896" + /inference="protein motif:TFAM:TIGR00634" + /note="TIGRFAM: DNA repair protein RecN; + PFAM: SMC domain protein; + KEGG: cth:Cthe_0814 DNA repair protein RecN" + /codon_start=1 + /transl_table=11 + /product="DNA repair protein RecN" + /protein_id="ACL76244.1" + /db_xref="InterPro:IPR003395" + /db_xref="InterPro:IPR004604" + /translation="MLLQLDIQNIALIDKISLEIAPGLNVLTGETGAGKSILIDSINA + VLGERVNRDIIRNGKEKAFIEAVFDYDSTYVNDILDELGIEHEDGSLILSREISLSGK + NTCRINGRLVNVSVLKQVGQLLLDIHGQHDNQSLLKTESHVELLDAFGGEVIQKVISE + YYCLFEEFKSVKSKLKDIVGDKGEIERRMDMLKFQIDEIKNSKLKEGEDEYLLKRRQL + LANSEKIMNSIHSSYQLLSEGGDNGKSALYNINKAFSELSAVQKYDEDLLPLSEKLES + VVYQLEDICEDLRARRDEDDFDRDELSRVEERLDIVTRMKRKYGGSIEEALDFLKKSQ + LEYNELLQSENLAEDLKKQLATITKKLKETAVKLHLQRQKAASVLESNITAELENLEM + KNARFKVNIIMDDTKFNFTKNGLDNVEFLISSNPGEPLKPLSRIASGGEMSRIMLAIK + TILANVDAIPTLIFDEIDTGISGKAAQKVGEKLSYISRTHQVICVTHLSQLACMADNH + FYIEKKSKGESTYTTVRILDEKGRIQEIARIIGGSDITSIAYKHAEELLHSAENFKKS + V" + gene complement(2254104..2254556) + /locus_tag="Ccel_1897" + CDS complement(2254104..2254556) + /locus_tag="Ccel_1897" + /inference="protein motif:PFAM:PF01316" + /note="PFAM: arginine repressor; + KEGG: cth:Cthe_0815 ArgR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="arginine repressor, ArgR" + /protein_id="ACL76245.1" + /db_xref="InterPro:IPR001669" + /translation="MKYNRHAKILDIIENNTIETQEELAEKLKQQGMDVTQATVSRDI + KELRLIKVMTPEGYYKYSAFAQSEKQVSNRLITILTEAYVSSDYANNIVVVKTLSGMA + QAAGSAIDSLKWNEILGTIAGDDTLIMVCRAEKIAEDIVNKFNKMIKS" + gene complement(2254559..2255419) + /locus_tag="Ccel_1898" + CDS complement(2254559..2255419) + /locus_tag="Ccel_1898" + /inference="protein motif:PFAM:PF01513" + /note="PFAM: ATP-NAD/AcoX kinase; + KEGG: cth:Cthe_0816 NAD(+) kinase" + /codon_start=1 + /transl_table=11 + /product="ATP-NAD/AcoX kinase" + /protein_id="ACL76246.1" + /db_xref="InterPro:IPR002504" + /translation="MKKIGVITNREKDKGLKYTNQLVESIEKHGGQAVLPTYDGSFQM + DDIDNQVVEICNNCDMVICLGGDGTFLRTARTAYLYGLPMLGINLGSLGFLTDVEKGE + IDKAVENILNNRFCLEDRIMLTSKLYKDGKLIARDVAINDIVISRGGIPRILHLSTYI + DNNLVEMFPGDGIVVATPTGSTAYSLSAGGPIVEPTSGLILITPICPHILSSRALITS + DMRKIKICVSQGFEHKATVTVDGQKNLEITGGDYLEIEKANSTVKIIRVNSKNFFTVL + RSKIYERKEE" + gene complement(2255485..2256297) + /locus_tag="Ccel_1899" + CDS complement(2255485..2256297) + /locus_tag="Ccel_1899" + /inference="protein motif:TFAM:TIGR00478" + /note="TIGRFAM: hemolysin A; + PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; + RNA-binding S4 domain protein; + KEGG: cth:Cthe_0827 hemolysin A" + /codon_start=1 + /transl_table=11 + /product="hemolysin A" + /protein_id="ACL76247.1" + /db_xref="InterPro:IPR002877" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR004538" + /translation="MEKERLDVLLVNKGLFESREKCKSAIMAGLVWIDGIREDKPGTK + VPVECTIEIRENLNPFVSRGGLKLAKAVSNFDIDLANKTCLDIGASTGGFTDCMLKNG + AAKVVAIDVGYGQLAWELRNDPRVICMERTNVRYVKPEDIGFLSDFASIDVSFISLTK + VLPAVLAVLKDEAELVCLIKPQFEAGREKVGKHGVVRDSGVHKEVIHYIINFVTAANL + FVKELSFSPIKGPEGNIEYLLYITKTENQDSKDIDKLVESVVSEAHSTLVKS" + gene complement(2256319..2258190) + /locus_tag="Ccel_1900" + CDS complement(2256319..2258190) + /locus_tag="Ccel_1900" + /inference="protein motif:TFAM:TIGR00204" + /note="TIGRFAM: deoxyxylulose-5-phosphate synthase; + PFAM: Transketolase central region; Transketolase domain + protein; + KEGG: cth:Cthe_0828 1-deoxy-D-xylulose-5-phosphate + synthase" + /codon_start=1 + /transl_table=11 + /product="deoxyxylulose-5-phosphate synthase" + /protein_id="ACL76248.1" + /db_xref="InterPro:IPR005475" + /db_xref="InterPro:IPR005476" + /db_xref="InterPro:IPR005477" + /translation="MGYLDSIKFPEDIGKLELEQLKVLAEEIRTFLIYKVSKTGGHLA + SNLGIVELTLAIHSNFNTNKDRIVWDVGHQSYVHKILTGRKADFDTLRKLGGLAGFPK + TCESLHDCFNTGHSSTSISAALGIARARDIKKEDYSVMAVIGDGAMTGGMAYEALNDA + GRLASNFIVVLNDNEMSIAQNVGGMSRYLSKLRTDPFYTKTKEDIDNFLDKMPNIGTK + TRRAVRKLKSTVKYLITPGMFFEQLGYRYYGPVDGHNLDELNKALQAAKKIKGPVLIH + VCTQKGKGYSYAEESPDRFHGIAPFEIETGETYGKRLPDYSEVFGEAVLEAAEKNNRV + VAISAAMTKGTGLAKFSTTFPRRFFDVGIAEQHAVTSAAGMAINGIIPVVAIYSSFLQ + RAYDQLIHDVALQKLHVVIGVDRAGIVGEDGETHQGEFDISFLNHIPDFTIMAPADYY + ELREMVNYAINIHTGPIAIRYPRGRGKEIIKHEVPLVNGKGAVLKEGQDVCILAVGRM + VETAFKVSEKLKEKGINAGVVSARFIKPLDVELITECANKYKNIVTMEENCVIGGFGS + RVLDTLNRLDLKARILIKGLPEQFIPQGSREELIKKLKLDADSVTNDIIYMLENTKL" + gene complement(2258197..2258859) + /locus_tag="Ccel_1901" + CDS complement(2258197..2258859) + /locus_tag="Ccel_1901" + /inference="similar to AA sequence:KEGG:Cthe_0829" + /note="KEGG: cth:Cthe_0829 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76249.1" + /translation="MEDYYKHPADEKKVKFRANVISSKKETRVWTLLITVITFFISIF + MSFFSNETLGNATTVVSFLIVFVIIIISILFDLIGTAATAADEAPFHSMASRKLYGAK + QAVKLIRNADKVSNFCNDVVGDICGVISGTAAAFIVYKFSGGNTGAQNSIFGLCITAM + VASLTVGGKALGKSIALQNSNYIIYKVAVVIRFLFGKIDFKTKKKWHNNKKCTNKGTE + KE" + gene complement(2259602..2260486) + /locus_tag="Ccel_1902" + CDS complement(2259602..2260486) + /locus_tag="Ccel_1902" + /inference="protein motif:PFAM:PF00348" + /note="PFAM: Polyprenyl synthetase; + KEGG: cth:Cthe_0831 farnesyl-diphosphate synthase" + /codon_start=1 + /transl_table=11 + /product="Polyprenyl synthetase" + /protein_id="ACL76250.1" + /db_xref="InterPro:IPR000092" + /translation="MNFKEKNNIYVNMIEERLHNIIPEVDEYCLDIEQAMSYSLLAGG + KRLRPVLALAVAEMFDKPFDEVINFGCAIEMIHTYSLIHDDLPAMDNDDYRRGKLTNH + KVFGEAMAILAGDGLLNMAYEIMINDAVESRNIEKMRAAGIVAKYAGALGMVGGQVID + LQSEEKTIESDRLKTMHRLKTGALIKAPVEAAAVICGADKKEFELLSGYAANLGLAFQ + IKDDILDIEGTVENMGKNPGNDSSCHKSTYVTMYGLEESKKLLQTVTQEGISCLDAFG + DKGQFMKELALSLTVRDR" + gene complement(2260501..2260737) + /locus_tag="Ccel_1903" + CDS complement(2260501..2260737) + /locus_tag="Ccel_1903" + /inference="protein motif:TFAM:TIGR01280" + /note="TIGRFAM: exodeoxyribonuclease VII, small subunit; + PFAM: Exonuclease VII small subunit; + KEGG: nth:Nther_1698 exodeoxyribonuclease VII small + subunit" + /codon_start=1 + /transl_table=11 + /product="exodeoxyribonuclease VII, small subunit" + /protein_id="ACL76251.1" + /db_xref="InterPro:IPR003761" + /translation="MSKTVKIEKSFEEAIAELEQIVLKLEKGEATLEESITSFQQGIE + LSRYCAARLDEAEKQITMLIKDEEDNFEEKDFNI" + gene complement(2260730..2261944) + /locus_tag="Ccel_1904" + CDS complement(2260730..2261944) + /locus_tag="Ccel_1904" + /inference="protein motif:TFAM:TIGR00237" + /note="TIGRFAM: exodeoxyribonuclease VII, large subunit; + PFAM: Exonuclease VII large subunit; nucleic acid binding + OB-fold tRNA/helicase-type; + KEGG: cth:Cthe_0833 exodeoxyribonuclease VII large + subunit" + /codon_start=1 + /transl_table=11 + /product="exodeoxyribonuclease VII, large subunit" + /protein_id="ACL76252.1" + /db_xref="InterPro:IPR003753" + /db_xref="InterPro:IPR004365" + /translation="MNRVYSVSDINNYIKQLVSNDIILSDVSIRGEISNFKHHYTGHM + YFTIKDKNSLLKCVMFRSQAVSLRFSPENGMKVIVSGYISVFERDGQYQLYASSMQPD + GVGALHIAFEQLKEKLQREGLFDPENKKKIPVLPGSIGVVTSSTGAVIRDIINVTYRR + NSKMKLVLYPVAVQGQQAAGQIAEAIKCLNEQNKVDVIIVARGGGSLEELWAFNEEIV + ARSIYASNIPVISAVGHETDFTICDFVSDMRAPTPSAAAELAVPDMEVLLYKLESYNM + RMKSSLAKKVTTLKNQLQKLNARPFFAQPYDRVNQQRQTLDNLTKSMVRENQTIIKDK + KSQFGMLAGKLDALSPLKILERGYSLVKNPQGYVVNNVKQINIGDKLEILMNDGLAEC + DVISVREGKIYE" + gene complement(2262015..2262452) + /locus_tag="Ccel_1905" + CDS complement(2262015..2262452) + /locus_tag="Ccel_1905" + /inference="protein motif:TFAM:TIGR01951" + /note="TIGRFAM: transcription antitermination factor NusB; + PFAM: NusB/RsmB/TIM44; + KEGG: cth:Cthe_0834 NusB antitermination factor" + /codon_start=1 + /transl_table=11 + /product="NusB antitermination factor" + /protein_id="ACL76253.1" + /db_xref="InterPro:IPR006027" + /db_xref="InterPro:IPR011605" + /translation="MGRRASRETAMKLLYQLEIQKTDRDEQINMALEDESLTKNDREY + IKGIVDGVYEKTPVLDGIIEKKATGWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSV + NEAVELAKKYSNEDAGAFVNGLLAKVSKGDLPQETSANEVDSQ" + gene complement(2262480..2262710) + /locus_tag="Ccel_1906" + CDS complement(2262480..2262710) + /locus_tag="Ccel_1906" + /inference="similar to AA sequence:KEGG:Cthe_0835" + /note="KEGG: cth:Cthe_0835 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76254.1" + /translation="MNKQVLTDFYNQHKGEILGAAIGFVIAVIVLILGLLKALFIVLC + VVFGFYIGKKLYQDKDYIKNLLDRILPPGTYR" + gene complement(2262728..2263279) + /locus_tag="Ccel_1907" + CDS complement(2262728..2263279) + /locus_tag="Ccel_1907" + /inference="similar to AA sequence:KEGG:Cthe_0836" + /note="KEGG: cth:Cthe_0836 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76255.1" + /translation="MNIILRVLLAIYAFFLTIASMFAMLVTIKSDILSQAYTYLYNDV + LGYRNPSIIMFIVSSIFFCLSLTFLLSGFKPEGDKKAITKYNKNGDIRITLNSIENIA + LATSRKLNGIRDSKAFVTKVGESVSITVKAIVLPDINIPLLSEDMQQKVKSAVEDCTG + VQVDSVRVLVESIFTGYKSSRVE" + gene complement(2263443..2263826) + /locus_tag="Ccel_1908" + CDS complement(2263443..2263826) + /locus_tag="Ccel_1908" + /inference="protein motif:PFAM:PF03780" + /note="PFAM: protein of unknown function DUF322; + KEGG: cth:Cthe_0837 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF322" + /protein_id="ACL76256.1" + /db_xref="InterPro:IPR005531" + /db_xref="InterPro:IPR005829" + /translation="MEENNIIGDYGSVKISEEVVAIIAGIAATDVPGVAGMSGGIAGG + IAEILGRKNLSKGVKVEVGEKEAAIDLYIIVEFGARIPEVAWDIQDKVKNSVQNMTGL + NVVEVNIHIQGVNFDKEIKKDSETK" + gene complement(2264067..2264648) + /locus_tag="Ccel_1909" + CDS complement(2264067..2264648) + /locus_tag="Ccel_1909" + /inference="similar to AA sequence:KEGG:Cthe_0838" + /note="KEGG: cth:Cthe_0838 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76257.1" + /translation="MNFLKRKQIIVLSLVLMLVIAGYLQYNYNKTSQYSEDDSAQIGD + AVYVDNQDASDKENINTAVAGNEEKAATASKEANNFFAQAKMDRDVTRDKDIETMKGI + YEDGMASKDVKSKAYEKMMKIVERSQKEANIETLIKEKGFNDVVALFSDDGSVDVVVK + APAISKADWAKIADIVARQGNIPFDKIIIKNMF" + gene complement(2264775..2265395) + /locus_tag="Ccel_1910" + CDS complement(2264775..2265395) + /locus_tag="Ccel_1910" + /inference="similar to AA sequence:KEGG:Cthe_0839" + /note="KEGG: cth:Cthe_0839 stage III sporulation protein + AG" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AG" + /protein_id="ACL76258.1" + /translation="MYKFSNLIANLKKKITADGSKKVIQNTVIVAIIGIILLIAGSVF + FQGTDKNEEKVPPQTENGTEAVETLSRKEGETKDELEKSLEAILSQIKGAGKVSVMVT + FYSGSESVPVYNTKNSTSDTQEKDKEGGTRSVKQADRENNIIFEESDGVKKPYITKEL + LPKVKGVVIVADGAKDAEVRSSLAKATEALFEVASHKIQVFERNKN" + gene complement(2265451..2266092) + /locus_tag="Ccel_1911" + CDS complement(2265451..2266092) + /locus_tag="Ccel_1911" + /inference="similar to AA sequence:KEGG:Cthe_0840" + /note="KEGG: cth:Cthe_0840 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76259.1" + /translation="MLDFLKSWIINIVTITIILVLFEIIMPSGKIKKIISLIAGFILL + IAVINPFLALKNKNFNLGQNVISDSMYIDKNELEASSRLLKDKQMKQVSQVYKKKVIT + SIQEQAQKVEGVSQAKADIEINEDYSSNKFGEITRVNLQIKRGKKQSDSVRINSVIPV + KKIDISLPFVNGKSKKKVEGPTDNENKKITEQVKQTINKSFEIHKDNIIVTVN" + gene complement(2266107..2267303) + /locus_tag="Ccel_1912" + CDS complement(2266107..2267303) + /locus_tag="Ccel_1912" + /inference="protein motif:TFAM:TIGR02829" + /note="TIGRFAM: stage III sporulation protein AE; + PFAM: Sporulation stage III protein AE; + KEGG: cth:Cthe_0841 mutants block sporulation after + engulfment" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AE" + /protein_id="ACL76260.1" + /db_xref="InterPro:IPR014194" + /translation="MKLQKLVFTVLLIITVFFPLHVHAETIRQNTGSSTGNEQILDDQ + LKDSSGISDSVRKYYTGDSQELFPDFDPGKIVSDAAKGNLNFSFSGVINGLIKYLLKE + VFLNADILIKIIVLCIICAILKNLQNSFLSESVGEMAFFVCYIVLVSVLMVSFSMAMK + MCMEIIDNMVSFMHSIIPLLITLLATSGSISSAGVFQPVLVMLIEIGATVIKNFFIPL + IFIVTILNIVNNISDKIQLTKLAGFMKQICTWGLGFILTIFIAIVSIQGSMGAVVDGV + TSKTAKFALGTFIPVVGKYLADAADTVVGCTLVIKNASGLIAMIGILIICLAPLLKIL + AMVVLYKLACAFVEPISDKKITNCLNDMSGSLTYILGVTAAVAVMFLIAITIVISTSN + MSAAIR" + gene complement(2267365..2267751) + /locus_tag="Ccel_1913" + CDS complement(2267365..2267751) + /locus_tag="Ccel_1913" + /inference="protein motif:TFAM:TIGR02849" + /note="TIGRFAM: stage III sporulation protein AD; + PFAM: Sporulation stage III protein AD; + KEGG: cth:Cthe_0842 stage III sporulation protein AD" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AD" + /protein_id="ACL76261.1" + /db_xref="InterPro:IPR014211" + /translation="MDILQIVCIGIVAVALSSVIKAQKPELALQVSLITGILIFMLVV + VKLSAVIDFIKTFSQKADIDSEYISILLKIVGIAYISEFGAEVCKDAGESSIASKIEL + AGKVTIVVLAVPIITSLLDLVVKLMP" + gene complement(2267787..2267981) + /locus_tag="Ccel_1914" + CDS complement(2267787..2267981) + /locus_tag="Ccel_1914" + /inference="protein motif:TFAM:TIGR02848" + /note="TIGRFAM: stage III sporulation protein AC; + PFAM: Stage III sporulation AC family protein; + KEGG: cth:Cthe_0843 stage III sporulation AC" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AC" + /protein_id="ACL76262.1" + /db_xref="InterPro:IPR009570" + /translation="MEVDLIFKIAAIGILVSVLNQVLIRSGREEQAMMTTLAGIVVVL + LMVSKQIAGLFEAVKTMFQF" + gene complement(2268002..2268520) + /locus_tag="Ccel_1915" + CDS complement(2268002..2268520) + /locus_tag="Ccel_1915" + /inference="protein motif:TFAM:TIGR02833" + /note="TIGRFAM: stage III sporulation protein AB; + PFAM: Sporulation stage III protein AB; + KEGG: cth:Cthe_0844 stage III sporulation protein + spoIIIAB" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AB" + /protein_id="ACL76263.1" + /db_xref="InterPro:IPR014198" + /translation="MIIKIIGSVLLICATSLIGFSLAADCSKRPKVLRELQVLLQMLE + NEISYLSNLLAQSFERIYTSSKTDASLIFKEAAENLSLPGITADTAWEKAVENTYSKL + GLNKEDKGILITFGKMLGSSDLEGQINNINLVSSQLKLQEMKAEQMRQKNEKMYKSLG + VLSGLAIVVVLF" + gene complement(2268534..2269529) + /locus_tag="Ccel_1916" + CDS complement(2268534..2269529) + /locus_tag="Ccel_1916" + /inference="protein motif:TFAM:TIGR02858" + /note="TIGRFAM: stage III sporulation protein AA; + SMART: AAA ATPase; + KEGG: cth:Cthe_0845 stage III sporulation protein + spoIIIAA" + /codon_start=1 + /transl_table=11 + /product="stage III sporulation protein AA" + /protein_id="ACL76264.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR014217" + /translation="MTTAQFFESKSIKGEILPFLIPGIRAVIQNINVNELNNLEEIRL + RAGKPLMVFYKRNDWFVAENGRLSRSLSEAYMVDQKEIVKTLELMSENSIYAYQDEIK + SGYLTLRGGHRIGLSGRVVLQEGKIRNIKDFNGINIRIAREVKGCANHIIKYIIKNNS + DTYNTLIVGPPQCGKTTILRDLSRMLSSGETEYGFSGMKVGIVDERSEIAACCKGVPQ + SDVGYRTDVMDGCPKALGMEMLLRSMSPEIIITDEIGTHGDKEAILKVLNSGIKIIAS + AHGYNITELKMREELLSLIKSAAFERYIVLSSRNGPGTLEEVVDAGMTPIYRLLS" + gene complement(2269730..2270554) + /locus_tag="Ccel_1917" + CDS complement(2269730..2270554) + /locus_tag="Ccel_1917" + /inference="similar to AA sequence:KEGG:CD1619" + /note="KEGG: cdf:CD1619 putative ABC transporter, peremase + protein" + /codon_start=1 + /transl_table=11 + /product="putative ABC transporter, peremase protein" + /protein_id="ACL76265.1" + /translation="MLGKLLKYEVKDTSRIIPFFYAITAVLAGLSLLSGKLELGWFKV + TSSVLLLLVGIAVFVVTLVVICMRFYKNLYSNEGYLSFTLPLKPHLHLISKAIVSFIW + MILSVLICLGAFYVALYGLGVDGEIWSSVLDEIERYGMGNYIYLIIPMVCLSILYLMS + QIYFSITLANRPQFHNMGPAGASILLFLATNVALQIVETIITIIIPLSVNVNLSGSLD + ISLTTQNMVGFLVENINNQNPSSIVIGLGGYIFDIIMICVLFYLTGRMMNKKVSLR" + gene complement(2270548..2271246) + /locus_tag="Ccel_1918" + CDS complement(2270548..2271246) + /locus_tag="Ccel_1918" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cdf:CD1618 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76266.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MSNIIEINSLNKRYGSKKVLENVSLSLESGTIVGLLGPNGCGKT + SMIKIIAGLIKDYEGQVLIDGKAPDEYTKSIVSYLPEKTYLGDNLRAKDALDFFEDFY + SDFDREKAKRMLSQFKLDPNQKIKSMSKGMQEKVQLILVMSRKAKVYLLDEPLGGLDP + ASRKAMLDIILNNYSEDAVVLLSTHLINDVERIFDRVIMVGNNRILINDTVDNIRQTN + GKSVEELFEEVFKC" + gene complement(2271239..2271628) + /locus_tag="Ccel_1919" + CDS complement(2271239..2271628) + /locus_tag="Ccel_1919" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; + KEGG: cbt:CLH_0644 transcriptional regulator, GntR family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL76267.1" + /db_xref="InterPro:IPR000524" + /translation="MANDFTSNVPIYIQIMNEVKLKIVSGVWEAGQRLQSVRELAVEF + SVNPNTMQKALSELEREGLLYTERTAGRFVSQDGAKIKKARDEMAEEYTISYYNLMKK + LGYKEEEIIYVVSSRLSDIEKGGLENE" + gene complement(2271649..2272056) + /locus_tag="Ccel_1920" + CDS complement(2271649..2272056) + /locus_tag="Ccel_1920" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: btk:BT9727_4703 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76268.1" + /translation="MTNRKLILLFLILAAVILPGCTYGNYSSTRSVQINTSSQMYMSY + AKFNGTRTTQVRVKKGKPIDVHAKIVSKEGNLDLSVTDDKKNKIYNGKNLPTSSFVVT + IDKEGVYNITVRGEKHKGSYKITWGEANEENNK" + gene complement(2272268..2272672) + /locus_tag="Ccel_1921" + CDS complement(2272268..2272672) + /locus_tag="Ccel_1921" + /inference="similar to AA sequence:KEGG:Cthe_0846" + /note="KEGG: cth:Cthe_0846 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76269.1" + /translation="MSYISERVAFIKGLAEGMNINDSTNEGKLLNAIIDVLDDISLAI + EDIEEIQDDLGEQVDSIDEDLAEIEKLIYDEDDIEFEEIECPNCGEKIDVDLEMIDED + AESIECPHCHEKIELEWDCECGCDCGHDHDEE" + gene complement(2272705..2273265) + /locus_tag="Ccel_1922" + CDS complement(2272705..2273265) + /locus_tag="Ccel_1922" + /inference="protein motif:TFAM:TIGR00038" + /note="TIGRFAM: translation elongation factor P; + PFAM: Elongation factor P/YeiP protein; Elongation factor + KOW domain protein; Elongation factor P; + KEGG: cth:Cthe_0847 translation elongation factor P + (EF-P)" + /codon_start=1 + /transl_table=11 + /product="translation elongation factor P" + /protein_id="ACL76270.1" + /db_xref="InterPro:IPR001059" + /db_xref="InterPro:IPR011768" + /db_xref="InterPro:IPR013185" + /db_xref="InterPro:IPR013852" + /db_xref="InterPro:IPR015365" + /translation="MIVAGDFKNGVTFELDNNIFQVVEFQHVKPGKGAAFVRTKLKNI + ITGATVERTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDVESYEQLPINKETIGNTL + DLVKENDIVKILSHKGNVFGIEPPTFVELEVTETDPGFKGDTATGATKPATVETGYVI + KVPLFVNTGDIIRIDTRTNEYMERVK" + gene complement(2273419..2274504) + /locus_tag="Ccel_1923" + CDS complement(2273419..2274504) + /locus_tag="Ccel_1923" + /inference="protein motif:PFAM:PF00557" + /note="PFAM: creatinase; peptidase M24; + KEGG: cth:Cthe_0848 peptidase M24" + /codon_start=1 + /transl_table=11 + /product="peptidase M24" + /protein_id="ACL76271.1" + /db_xref="InterPro:IPR000587" + /db_xref="InterPro:IPR000994" + /db_xref="InterPro:IPR001131" + /translation="MVEKEILSNRLNTFREELKKLGQDGALITKRENYMYLSGFSGTS + ANLVITSKKAYLLTDFRYVEQSAVQAPLFEIVEHKPDIKDTILEILDSEGIKNLGFED + KSLTYSEYKSFSCKFRDIEMEGIGSVVESLRSIKDQYEIETITKAVEIADGAFTHVLG + IIKPGITELDVAAELEYKMKKLGASGASFETIVASGLRSSMPHGVASEKKLEIGDTIT + MDFGALYNHYCSDITRTVFLGQPDKKMVDIYNIVLEAQLSSVRGAIQGKTGREVDKIG + RDIIYGKGFEGKFGHGLGHGLGLEIHENPRLSPSGDKILKNNMAVTVEPGIYVEGLGG + VRIEDTIIIRDDNPLVLTRSQKDLIIL" + gene complement(2274556..2274984) + /locus_tag="Ccel_1924" + CDS complement(2274556..2274984) + /locus_tag="Ccel_1924" + /inference="protein motif:TFAM:TIGR01088" + /note="TIGRFAM: 3-dehydroquinate dehydratase, type II; + PFAM: dehydroquinase class II; + KEGG: cth:Cthe_0849 3-dehydroquinate dehydratase" + /codon_start=1 + /transl_table=11 + /product="3-dehydroquinate dehydratase, type II" + /protein_id="ACL76272.1" + /db_xref="InterPro:IPR001874" + /translation="MKKVLVINGPNLNMLGIREKAVYGSETLLDIAKEVTTVSQELRL + ETDFVQSNHEGEIIDKLHAARGVYDVVIINAGAYTHYSIAIRDAIKAIEIPTIEIHLS + NIHSREEFRHTSMIAPVCVGQICGFGKMSYILALHAAVNL" + gene complement(2275162..2276028) + /locus_tag="Ccel_1925" + CDS complement(2275162..2276028) + /locus_tag="Ccel_1925" + /inference="protein motif:PFAM:PF01261" + /note="PFAM: Xylose isomerase domain protein TIM barrel; + SMART: AP endonuclease family 2; + KEGG: tpd:Teth39_1081 xylose isomerase domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="Xylose isomerase domain protein TIM barrel" + /protein_id="ACL76273.1" + /db_xref="InterPro:IPR001719" + /db_xref="InterPro:IPR012307" + /translation="MIRFGPSGNSDSFYEEGFKSSVQMPAWLASKGLNAYEYSCTKGV + KVGEATAREIGQQAESNNISVSIHAPYYINMSSEEEDKRENSKRYIMETLQVAKWMGA + KRIVVHTGSTSKLGREKSLELAIQVLKETLQMSDAAGFGDISICPEVLGKHNQLGTLE + EIMEMCKNDERLIPTIDFGHIHARGLGMLNSQEDFEKVIDYIENSIGKERAKRIHCHF + SRIEFSKGGEKKHWNFADKQFGPEFEHLAPVLVNRQMEPVIICESRGMMAEDASEMKD + IYYGILENQNLF" + gene complement(2276048..2277478) + /locus_tag="Ccel_1926" + CDS complement(2276048..2277478) + /locus_tag="Ccel_1926" + /inference="protein motif:PFAM:PF02127" + /note="PFAM: peptidase M18 aminopeptidase I; + KEGG: cth:Cthe_0726 putative aminopeptidase 1" + /codon_start=1 + /transl_table=11 + /product="peptidase M18 aminopeptidase I" + /protein_id="ACL76274.1" + /db_xref="InterPro:IPR001948" + /translation="MDKEKTQGELLNERLVYKQKNAWEHSEKEVQKAFDLCEDYKTYL + DKGKTEREFCSVVESQLVKSGYENLNELMKKGSKLKQGTKVYYINKQKSAVFAVIGRE + PLTQGINMVGAHIDSPRLDLKPNPLYEDTGMVLLKTHYYGGIKKYQWVTIPYSLHGVV + FKADGTKVEVCIGEDDKDPVFTITDLLPHLAQNQMQKKATEVVEGESLNILLGSIPYK + DDKVKDKIKLNILKLLNEKYGMVEEDFISAELEAVPAFKARDIGLDRSMVGAYGQDDR + VCAFTCVKAMLELTQPEKTALCILTDKEEIGSMGNTGAQSNLLKSFISKLLYLTADNY + SDILTNQCLENSKMLSADVNAAVDPTYTSVNEKSNSSYMGNGVVLQKYTGSRGKYDAS + DANAEFVSEIRNLFNKEGIIWHLSEMGKVDLGGGGTIAQHVANLGVDVLDCGVPILSM + HSPMEISSKIDVYMSYRAMKVFLERK" + gene 2277614..2278411 + /locus_tag="Ccel_1927" + CDS 2277614..2278411 + /locus_tag="Ccel_1927" + /inference="protein motif:TFAM:TIGR01856" + /note="TIGRFAM: histidinol phosphate phosphatase HisJ + family; + PFAM: PHP domain protein; + KEGG: cth:Cthe_0724 HisJ family histidinol phosphate + phosphatase" + /codon_start=1 + /transl_table=11 + /product="histidinol phosphate phosphatase HisJ family" + /protein_id="ACL76275.1" + /db_xref="InterPro:IPR004013" + /db_xref="InterPro:IPR010140" + /translation="MHDNHIHSKFSADSHMEAEEACKRAVEIGLSGLVFTDHVDYDFP + DFDESFLIDYNEYFSFFHELKARWKSKLDILIGVEMGYQPQVIDEIENTLNSYSFDFV + INSVHIIEHKDPYTGDYFIGKTQEQAYERYLQEILCSVNAYDNYDVIGHIGYAARYGN + YKDKPIRYKDYSDIIDEILKAVIEKGKGIELNTSGLRGDLGCTIPGYDVFKRYFELGG + EIITIGSDSHYTEHLGHSFNEALEYMANIGFKQVAHFEKRKPVFEKI" + gene complement(2278455..2278643) + /locus_tag="Ccel_1928" + CDS complement(2278455..2278643) + /locus_tag="Ccel_1928" + /inference="similar to AA sequence:KEGG:CKL_3623" + /note="KEGG: ckl:CKL_3623 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76276.1" + /translation="MREGLIPTVLGTAVTATGLAMRGYDMKKHGMKKRDTAVAIGAGV + IGFGIAHVVLGTIDLIHK" + gene complement(2278722..2280281) + /locus_tag="Ccel_1929" + CDS complement(2278722..2280281) + /locus_tag="Ccel_1929" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: nth:Nther_2705 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76277.1" + /translation="MRKNKLRILFLAVVLITVSFHVDNSYSADHTNKNTLIQSVSIDA + DNDKNPEFKVLLYNTRSDVKYVVQSPYISKYKYMASKIYKLIQYKNGKKIGYVNLTLK + SLSDNNNWMFFINYYSDEANIKLKYDIKAYSEQKNLDILTFPNQKGKYILKREKAQSK + ITLSNKVTYLESAKRYIKFGEIISAKGLGSTVCEIYKYKADNVLTKSKDGFNSQITLN + SIAKREIRGNWLLSVNPMVDWNYKTAFNTMLKMDFESGTIFFSDGVYRENMYNYVPRS + SSVKTYFKNPAGLQVRACKWVLDKGSLFKTVGVYSMYAFADSINKTGYIPTQPMSEWL + NSDYNIKYNFYDTRFNSDTMTSLIYIYKDYPDKYILDKLNKYITFYKNYYKTKQYSIG + KAKFVPDYMDISGKNKINPTSLNHFIAETEVMFLYYNLTGDKECHKMALEMLNSIKLT + SSKWIRPNGDLWYRVTPQGVFMTDDYPLVTYNDLVFFRQILKTVEGKIPAEIEKMYQS + KEKWAKNQRFL" + gene complement(2280416..2281495) + /locus_tag="Ccel_1930" + CDS complement(2280416..2281495) + /locus_tag="Ccel_1930" + /inference="protein motif:PFAM:PF03054" + /note="PFAM: ExsB family protein; tRNA + (5-methylaminomethyl-2-thiouridylate)-methyltransferase; + KEGG: cth:Cthe_0722 tRNA + (5-methylaminomethyl-2-thiouridylate)-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="tRNA + (5-methylaminomethyl-2-thiouridylate)-methyltransferase" + /protein_id="ACL76278.1" + /db_xref="InterPro:IPR004479" + /db_xref="InterPro:IPR004506" + /translation="MGSKKVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQIWQDMDEE + RRKSEGGCCSLSAVDDARRVANKLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPC + IACNRHVKWQAMLDKALSMGIDYIATGHYAKVIQDAETGRFILKKSVTDKKDQTYALY + NLTQQQLSHTLMPVGDYTKDEIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENC + DKKIVPGKFVDTKGNVLGNHKGIVHYTIGQRKGLGIAFGKPMFVVAVDPVNNTVVLGD + DSEVFSEKLTASDLNFISIEKPIDGMRVNAKIRYSAKEAPATISIIDENRIRVVFDTP + QRAITPGQSVVFYDGDVVVGGGTID" + gene complement(2281517..2281978) + /locus_tag="Ccel_1931" + CDS complement(2281517..2281978) + /locus_tag="Ccel_1931" + /inference="protein motif:TFAM:TIGR03419" + /note="TIGRFAM: FeS cluster assembly scaffold protein + NifU; + PFAM: nitrogen-fixing NifU domain protein; + KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein" + /codon_start=1 + /transl_table=11 + /product="FeS cluster assembly scaffold protein NifU" + /protein_id="ACL76279.1" + /db_xref="InterPro:IPR002871" + /db_xref="InterPro:IPR017787" + /translation="MYSEKVMDHFSNPRNVGEIEDADGVGQVGNSKCGDIMKMYLKIE + DNIVVDAKFKTFGCGAAVATSSMATELVKGKTVEEAMNITNKAVAEALDGLPPAKMHC + SNLAEEAIAAALTDYRKRNGLVDSNEGGDCTGECSCCHHSHGREENFEDEE" + gene complement(2282022..2283203) + /locus_tag="Ccel_1932" + CDS complement(2282022..2283203) + /locus_tag="Ccel_1932" + /inference="protein motif:TFAM:TIGR03402" + /note="TIGRFAM: cysteine desulfurase NifS; + PFAM: aminotransferase class V; aromatic amino acid + beta-eliminating lyase/threonine aldolase; + KEGG: cth:Cthe_0720 aminotransferase, class V" + /codon_start=1 + /transl_table=11 + /product="cysteine desulfurase NifS" + /protein_id="ACL76280.1" + /db_xref="InterPro:IPR000192" + /db_xref="InterPro:IPR001597" + /db_xref="InterPro:IPR017772" + /translation="MEDKTVYLDHAATTYVKSEVFDAMKPYFSEHFGNASSIYSLGRD + SKKAVEESREKVANAIGAEPREIYFTGSGSEADNWALKGIAAAFKKKGNHIITSAIEH + PAIMSSCKYLEGEGFEITYLPVDSDGLVTPEQVRDAIRDNTILISIMFANNEIGTIQP + IKEIGAIAKEKGVLFHTDAVQAVGNIRIDVKELNVDLLSLSSHKFYGPKGIGALYIKK + GIKIPSFIHGGQQERGKRASTENVPAIIGLGKAIEIATENLDEYNKKLTEFREKTIEG + LFAKVPYIRLNGHRHNRLPGNVNISFEFIEGESLLLMLDMKGICGSSGSACSSGSLDP + SHVLLAIGLPHEIAHGSLRLTFGDENTHEDVDYILEVIPQMVRKLRDMSPLWEAVKDK + K" + gene complement(2283278..2283724) + /locus_tag="Ccel_1933" + CDS complement(2283278..2283724) + /locus_tag="Ccel_1933" + /inference="protein motif:TFAM:TIGR00738" + /note="TIGRFAM: transcriptional regulator, Rrf2 family; + PFAM: protein of unknown function UPF0074; + KEGG: cth:Cthe_0719 BadM/Rrf2 family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, BadM/Rrf2 family" + /protein_id="ACL76281.1" + /db_xref="InterPro:IPR000944" + /translation="MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQ + LFSSLKKSGLVKSIRGAQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCD + RADECVTVDVWAKIRDKVNEVVDSITLADLVSELENKSNNDYIYYI" + gene complement(2283884..2284162) + /locus_tag="Ccel_1934" + CDS complement(2283884..2284162) + /locus_tag="Ccel_1934" + /inference="similar to AA sequence:KEGG:Cthe_0718" + /note="KEGG: cth:Cthe_0718 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76282.1" + /translation="MIIAVSSNQSDIAEGLKKRGYTVVDLYSYKKPVDAVVYQGKNFD + FSSITEDNISSAQGTGGTGYGVFIVCSNGKNIDEIDYMLKTRCYSSFF" + gene complement(2284228..2284467) + /locus_tag="Ccel_1935" + CDS complement(2284228..2284467) + /locus_tag="Ccel_1935" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76283.1" + /translation="METNTLKRVLAWILLAGFVLLLLNIAIFHVLIVPSVALYLLIAI + FFIFSKSRLAREKRNTVVTGGQQAIEQEAEKNKEN" + gene complement(2284457..2285755) + /locus_tag="Ccel_1936" + CDS complement(2284457..2285755) + /locus_tag="Ccel_1936" + /inference="protein motif:PFAM:PF00004" + /note="PFAM: AAA ATPase central domain protein; ATPase + associated with various cellular activities AAA_5; + SMART: AAA ATPase; + KEGG: cth:Cthe_0617 recombination factor protein RarA" + /codon_start=1 + /transl_table=11 + /product="AAA ATPase central domain protein" + /protein_id="ACL76284.1" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR011704" + /translation="MRDRIQPLAYRMSPRTIDEFVGQKHIIEKDKMLYRMIKADRITS + IILYGPPGTGKTSLARIIANTTQSTFEKLNAVTSGVADIKRIAADTQNTLLNPNGRTV + LFIDEIHRFNKSQQDALLPFVEDGSIVLIGATTENPFFEVNKALISRSTVFMLKPLES + TDIRELLENALVDKERGLGNYKINITDEALGYLCEICSGDARTALNSLELAVLTSELG + VDGQIDIGIDTIEQCVQKKAIRFDKSGEEHYDNISAFIKSMRGSSPDAAVFYLARALY + AGEDVEFLARRIIICASEDVGMANPTALQVAVAAAQAVKMIGMPEARILLAHAAVTVA + CSPKSNSAYMAINRALSDVEAKNTGSVPMHLRNAAAKGMEQLGYGIGYKYAHDYKNNI + VKQEFFPEEMKGTIYYNPTQNGYEARIKEWLERWRTKNGD" + gene complement(2285772..2287715) + /locus_tag="Ccel_1937" + CDS complement(2285772..2287715) + /locus_tag="Ccel_1937" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: cth:Cthe_0243 copper amine oxidase-like protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL76285.1" + /db_xref="InterPro:IPR012854" + /translation="MKNNKYISILIVLAILLASISGTYAADDDKTVIELRAGISQVCV + NGNYSNVTEPPYISDGTFMVPLEWFSETIGGEIAKISVGSERVIYGSNMAEITIGQTD + YTKNYEEKTMPVAPTQKNNITMVPVDFISSIFPVNITNDIDRGTLKIVLEDDGALNDL + SFLTGGISTPKIGNSYFGWSLSIPSGSRVISNSFKSDLIQITNEGRGLYLEIKVETKK + GRTLSQYSNTFKLENSTEESNLNLKAKVPYFESLGISEYDEPTRTRIYDKGQYFYSLT + IGCYDGSVSSKHLMSDKYYSDIISSFNLEYKGNVKGIQDLSKVVNGKVSYYNYISFST + RNKYLSWVMDVPANWNNLQIGSDQLTTFLGIDTKHYVQVAVNSLGEKTLGQYVENIKK + GYDKNFSPKAYTFVSTGERSLAKTTAKNLKFKIKQGAKSYIIDEYYLQKGSFVYEISL + KLPEKEYLKEKNEYLNTVDKISFFSENGDKLLDEINNFNASKEDDRVSLNDKLFNYVN + KAYKWNLKIPGYWTDTSAFNTIQFSNPNSNAFIMIEAIPSTPESKNLPDKEKFFLSAI + MSATGFKLTSKSTVSDKGTKVRNYIYRVEDEEQDLYGTAQIHVFEKGSYSYFFMSFMP + ELTATDKAVKEVNDIWKAFTITK" + gene complement(2287740..2288873) + /locus_tag="Ccel_1938" + CDS complement(2287740..2288873) + /locus_tag="Ccel_1938" + /inference="protein motif:PFAM:PF00089" + /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; + SMART: PDZ/DHR/GLGF domain protein; + KEGG: csc:Csac_2307 2-alkenal reductase" + /codon_start=1 + /transl_table=11 + /product="peptidase S1 and S6 chymotrypsin/Hap" + /protein_id="ACL76286.1" + /db_xref="InterPro:IPR001254" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR001940" + /translation="MKKFNLVRCAFLVIVSVLCTANTFAAGTTLRINGQELIDGVKTI + EGRQYISADAISSHLEGITVTQGNNTIEINSVNKISNVVSKVSPSVVGIIGKLKESSY + EYDETSDNIIFGTGVIYRSSGYIITNAHVVKDMESIVVVLSNSKAYKARLKAIDEDLD + LAEIKIDKGGLQPAKFGDISQVAVGDEVVAIGTPLSFGLRNSATRGIISGMNRSENRQ + YRFIQTDAAINSGNSGGPLVNMKGEVVGINSWVYAGIGVQGMSFSIPIDSVRYAINQF + EKFGKIRRPYLGLAFSDSITSIYGLPNTVSGVTVKSIEKGSPAQKYNIKVDDRLISIN + GIKVNSTTDYNEEMKKYLPGDIAEFKLQRDNREFSISVTFGEK" + gene complement(2288991..2289536) + /locus_tag="Ccel_1939" + CDS complement(2288991..2289536) + /locus_tag="Ccel_1939" + /inference="protein motif:TFAM:TIGR02258" + /note="TIGRFAM: 2'-5' RNA ligase; + PFAM: Phosphoesterase HXTX; + KEGG: amt:Amet_0775 2'-5' RNA ligase" + /codon_start=1 + /transl_table=11 + /product="2'-5' RNA ligase" + /protein_id="ACL76287.1" + /db_xref="InterPro:IPR004175" + /db_xref="InterPro:IPR014051" + /translation="MRVFFAIEFDDDIKTYLSEIQQKVRQHCTSGNFTLKENFHLTLR + FIGEQNTDHVQNLKQVLKDAAQFQGFELILDKPGIFRKGNRGIIWLGIEKSLQLQQLY + NNMEDLLSQKGYQKEERSYNPHITLAREVKTEDFGFLTEKIEIDKLTMKVKSISLMES + KRINDKLAYIPLERAELTDNR" + gene complement(2289688..2292144) + /locus_tag="Ccel_1940" + CDS complement(2289688..2292144) + /locus_tag="Ccel_1940" + /inference="protein motif:PFAM:PF00483" + /note="PFAM: transferase hexapeptide repeat containing + protein; Nucleotidyl transferase; + phosphoglucomutase/phosphomannomutase alpha/beta/alpha + domain I; + KEGG: cth:Cthe_1079 nucleotidyl transferase" + /codon_start=1 + /transl_table=11 + /product="Nucleotidyl transferase" + /protein_id="ACL76288.1" + /db_xref="InterPro:IPR001451" + /db_xref="InterPro:IPR005835" + /db_xref="InterPro:IPR005844" + /translation="MKAVIMAGGEGSRLRPLTCNRPKPMVPIANKPVMEHIIELLKKY + GIRDIAVTLQYMPEKIKDYFDDGSEYGVNLRYFTEDVPLGTAGSVKNAEEFLDETFIV + ISGDALTDINLEEVLDFHKKNSSIATLVLKKVECPIEYGVVVTDSGGKVRRFLEKPSW + GEVFSDTVNTGIYVLSPEVLKYFEKGVVFDFSKDLFPILLEKQEPMFGFVTKDYWCDI + GDLDAYVGVHTDILDKKVNININAMEVRQGVWVSEGAVISRQAEIKPPVLIGKNSVIK + DGSVLGRFTVIGEECHIGEGSTTKKSIMWDGCVLKNNVQLRGSVLCSRVKCREKTSAF + EGTVIGENCILGENSLIKPGIKIWPEKHIDIGTEVCTNLVWGSRYSKNLFGSRGISGE + INVDITPEFASRLAAAYGAVCKKGASLAVSCDEADALKMIKNACISGVLSSGAEAFDV + GTSLLPVTRSAIRYYKLTGGMHISGGNKKGKVIIDILDELGRNISRSAERKIENCYIR + EDFARCEADEIKAVTNVTDHNVFYIRSIINNTIAKNYDLKIALIAPSGAFKNIVTSIL + NELGCRYELVNTRDNHNKRKSLFSELKTLSQVVRYGGFDIGVFFANSYDKIFLVDTKG + RIIADDLYMALISYIHLRSKDGNKVIVPLNASSVIEKMAGENKERVLRTKTSTKELMS + RMLNNEYDKDMLDFFAMNFDPIEAFIRIIDYMVFSNISLADIVDLIPDFHIIKKEVKC + SWSEKGKVIRTIIEENSDSVETIEGVKVVGDKGWVLVLPDAEKPVCKVIGEGLTQEFA + HELTDIFVDKVKSISQNRGT" + gene complement(2292393..2294201) + /locus_tag="Ccel_1941" + CDS complement(2292393..2294201) + /locus_tag="Ccel_1941" + /inference="protein motif:TFAM:TIGR01393" + /note="TIGRFAM: small GTP-binding protein; GTP-binding + protein LepA; + PFAM: elongation factor G domain protein; protein + synthesis factor GTP-binding; elongation factor Tu domain + 2 protein; GTP-binding protein LepA domain protein; + KEGG: cth:Cthe_1326 GTP-binding protein LepA" + /codon_start=1 + /transl_table=11 + /product="GTP-binding protein LepA" + /protein_id="ACL76289.1" + /db_xref="InterPro:IPR000640" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006297" + /db_xref="InterPro:IPR013842" + /translation="MPSERQKYIRNFCIIAHIDHGKSTLADRLLEKTGVLTSREMQEQ + VLDNMELERERGITIKAQAVRMVYKASDGHEYIYNLIDTPGHVDFNYEVSRSLAACEG + AILVVDAAQGIEAQTLANVYLALEHNLEIMPVINKIDLPSAQPEVVKKEIEDVIGLDA + SQAPMISAKNGLNIEEVLEKIVDMIPCPEADEKAPLRALIFDSFYDSYKGVIVYIRVK + EGTLKTGDTIRLMYTKKEFLVTELGYLKPGGLSPADELKAGDVGYIAASIKNVRDTRV + GDTITLVENPAKEPLPGYKKVNSMVFCGIYPADGSKYGDLRDALDRLQLNDAALTFEP + ESSVALGFGFRCGFLGLLHMEIIQERLEREYNFDLVTTAPSVIYRVTTTDGDVIEIDN + PTNLPPVTEIDSMEEPMVKATIMVPTEYVGNIMDLSQERRGIYKDMSYIDEGRAMLTY + EMPLNEIIYDFFDALKSRTKGYASFDYELVGYKESDLVKLDIMLNGEIVDALSFIVHR + EKSVARGRRMAEKLKESIPRQMFEIPIQACIGGKIIARETVKAFRKDVLSKCYGGDIS + RKRKLLEKQKEGKKRMRQVGSVEVPQEAFMSVLKLD" + gene complement(2294339..2295781) + /locus_tag="Ccel_1942" + CDS complement(2294339..2295781) + /locus_tag="Ccel_1942" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: cpf:CPF_2611 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL76290.1" + /db_xref="InterPro:IPR012854" + /translation="MKKTLLFVMIAVMALTLFPAVTGISSAAADSESPVTVETAKIEK + TDDSCSIKIIYPVLSGFSSADKINDTLHNKNLDLIGFIRREQAYLDDYRKELPAEEKY + FPQVAIDSSFDYNTSGNILSLVTNTYEYLGGAHGMTTLQAYTVNTKTGELYSFNSLFN + QKSNYKKVILDKIKASIDKEKEWYFDEAKTFVDEAKGNYKFYIDGNRLVIYFGVYELR + PYAGGISRFSIPAKELKGLLKDDIYNQMVNAKPLEKIRLNGTSVKTQFKTYEKDYVLM + VPLKTAAEILGYKVGWNSKKGASVAGGYIKNNVDTYYTTGSRKIKLTPAKIIGNVMYV + PVAYFSEVLKEDVSYDGEGIRLFTKSTVTPSQFDLQSTEFVRADSAKACADMYTKAVK + ERKGVIQYGLMSPQLRTAKKAGFEEMNWVTGVSSPWVTSYNIKDNGNGTFKITFHWAT + STGKSPDTIATLTVSKVKDQEYYEISAIKE" + gene complement(2295877..2296158) + /locus_tag="Ccel_1943" + CDS complement(2295877..2296158) + /locus_tag="Ccel_1943" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76291.1" + /translation="MPRKTRFKQWRLYRLKIILVSVVFVLIIIFGLLAVDYNKSYIYY + GEPKMEMLQITSVKPDIYRVTFLSNYFDLNLKYLKDNIFKIRAFFITDK" + gene complement(2296247..2297470) + /locus_tag="Ccel_1944" + CDS complement(2296247..2297470) + /locus_tag="Ccel_1944" + /inference="protein motif:TFAM:TIGR02867" + /note="TIGRFAM: stage II sporulation protein P; + PFAM: Stage II sporulation P family protein; + KEGG: cth:Cthe_1328 stage II sporulation P" + /codon_start=1 + /transl_table=11 + /product="stage II sporulation protein P" + /protein_id="ACL76292.1" + /db_xref="InterPro:IPR010897" + /translation="MRDTIYDNTYLEGNKGNLTKLPIILCAVGGIVLGGIVFRLANGK + VNIPINFEHITRKSEATIESSDNIKEFVFKLFGIDMYNPITILNTNYPYFKMFYDKNY + QPYVAEKVQKELSATEKSQTKPVQQPQASIPQKPSEPAGGQLKEASSSITFEGDVEEK + DQKNNPVVSSGKINITNETGFKINIKKLLNEPLKLAPDKKGPKILIYHTHTTESFLKS + ASELGKSNIPSRTTNNKYNVVRVGDALINNLKKYSIDVLHNTTIHDSDYNSSYVKSLN + TLTSYVDKYPSLKMTIDLHRDAASEGKLRPVKKINGKNFAEIMFVIGTDAKLNNPKWR + ENLKLAIQVQARLNEICPGIAKPIYVSKNRYNQHLVNGSVIVEIGGDGNVIDECIRST + SYLAEALNDVIFRKK" + gene complement(2298025..2302305) + /locus_tag="Ccel_1945" + CDS complement(2298025..2302305) + /locus_tag="Ccel_1945" + /inference="protein motif:TFAM:TIGR00241" + /note="TIGRFAM: CoA-substrate-specific enzyme activase; + PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein + activase; + KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme + activase" + /codon_start=1 + /transl_table=11 + /product="CoA-substrate-specific enzyme activase" + /protein_id="ACL76293.1" + /db_xref="InterPro:IPR002731" + /db_xref="InterPro:IPR008275" + /translation="MKKKYHVGLDVGSTTVKMAVLDKYNRIVYSKYQRHYSDIRKSIF + ELMNELCNFFYQEECTMMITGSGGLLVSQWLGIEFIQEVIAGSEAIQTIIPQTDVAIE + LGGEDAKITYFRGGLEQRMNGTCAGGTGAFIDQMASLLQTDAAGLNEFAKNSRVIYPI + AARCGVFAKTDIQPLLNEGAAKEDIAASVFQAVVTQTISGLACGKPITGNIAFLGGPL + YFLSELRKRFEITLDLKPEEVIFPDNSQLFVAVGAAISSKECKTISFKEIKNRLPVLN + TATVHEVERLNPLFSSQKELDDFRERHAQQSVSVKPLKDYEGDCFLGIDAGSTTTKAV + LINNEGELLYSFYGSNKGSPLSSAVKILQDIYSKLPENVRIVNSTVTGYGEGLIKAGL + GVDIGEIETIAHYKAADFFLPGVDFILDIGGQDMKCLKIKDGVIDSIMLNEACSSGCG + SFIETFAKSLNFSVEEFAQQALLAEKPVDLGSRCTVFMNSRVKQAQKEGAQVGDISAG + LSYSVIKNALHKVIKIRNPKEMGKKIIVQGGTFLNDAVLRSFELISEREAIRPNIAGL + MGAFGAALIARERYTGNKSTILTKENIGDFVFETELQRCKLCNNNCLLTINQFNDGSR + FVSGNRCERGAGIKSTTQDVPNLYDYKYKRIFGYKQNNKVVNSRGTVGIPRVLNMYEN + YPFWFTFFDDLKFKVVLSPHSSKKIYELGIETMPSESVCYPAKLVHGHITSLINSKVD + FIFYPSLPYEKVEDKEADNYYNCPIVTSYPEVIKNNMDILHTSGVKLFNPFLPYDDKE + KLTLRLFQVLGKEFNITKAEVEQAVEKAWAEEEKAREDLRKKGEETLKNLQETGKKGI + VLAGRPYHVDPEINHGIPQIITSFGFAVLTEDSVAHLGKTERPLRVVDQWKYHTRLYA + AATVVKEHPELEMIQLNSFGCGLDAVTTDQVQEILHSNDEIYTVLKIDEGNNLGAAKI + RIRSLVAAIDERDKKTVIHHNKSGSFERKVFTKEMRKTHTILAPQMSPIHFQFVEAAF + KKAGYNIVVLHEVDNEAIDDGLKYVNNDACYPSIIVVGQIIHALKSGQYDPDNTSVLI + TQTGGGCRATNYIGFLKKALLDAGMEQIPVISLNALGLEKQPGFKISLKLLDLAFKGL + VYGDLLMRVLFRVRPYEKIPGSANELYKKWADVCIKSIYDNKKGSFKRNIKEIIKDFD + ELEINDVVKPRVGLVGEILVKFHPDANNNVVDVVEKEGAEAVMPDLIDFFLYCAYGPN + FKRKYLSGSLKSQLVNNAAISWIEWYRRHLKKYLRRSKRFDAPHSIYHLANSASEILS + LGHQTGEGWFLTAEMIELIKSGAGNIICMQPFACLPNHVTGKGMIKELRRRYPESNIV + AVDYDPGASEVNQLNRIKLMMSVAFKNMRGETDLQDSYQTPEQEKKQA" + gene complement(2302345..2304126) + /locus_tag="Ccel_1946" + CDS complement(2302345..2304126) + /locus_tag="Ccel_1946" + /inference="protein motif:TFAM:TIGR00459" + /note="TIGRFAM: aspartyl-tRNA synthetase; + PFAM: GAD domain protein; tRNA synthetase class II (D K + and N); nucleic acid binding OB-fold tRNA/helicase-type; + KEGG: cth:Cthe_1331 aspartyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="aspartyl-tRNA synthetase" + /protein_id="ACL76294.1" + /db_xref="InterPro:IPR002312" + /db_xref="InterPro:IPR004115" + /db_xref="InterPro:IPR004364" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR004524" + /db_xref="InterPro:IPR006195" + /translation="MGESIHGLERSHKCTELSSSNIGEKVTVMGWVQKQRNLGSLVFI + DLRDRTGIVQLVFTDKDGEMFDKAKTIRSEYVIATVGTVAARSAEAVNKKMATGEIEI + IASELRILSSSETPPMYIEENSDVNEQTRLKYRFLDLRRPDMQRNLILRHRVAKVARD + YYDQNGFLEIETPILIKSTPEGARDYLVPSRVHPGKFFALPQSPQLYKQLLMVSGYDR + YFQIAKCFRDEDLRADRQPEFTQIDIEMSFVNVDDVLEVNEGFVKKAFKEALGVDVET + PFTRMPYAEAMERFGSDKPDIRFGMELVNMSDLVANCGFKVFTDAVAMGGSVRAINAK + GCAKFSRKEIDALVDLVKTYKAKGMAWISISQENEIKSSFAKFMSEDEMKAILNRAQA + EAGDLICFVADKNNVVFDALGQLRLEIARKLDILNPDEFKFLWVTEFPLFEYDEEDQR + WAAKHHPFTSPMDEDLQYLDTDPGRVRAKAYDMVLNGVELGGGSIRIHIQELQAKMFK + MLGFTEEDANRKFGFLLEAFKYGTPPHGGMAFGLDRLVMLMAKRNSIRDVIAFPKVQN + ASCPMSNAPDVVDETQIEELHISIAKE" + gene complement(2304155..2305483) + /locus_tag="Ccel_1947" + CDS complement(2304155..2305483) + /locus_tag="Ccel_1947" + /inference="protein motif:TFAM:TIGR00442" + /note="TIGRFAM: histidyl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); + Anticodon-binding domain protein; + KEGG: ctc:CTC01958 histidyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="histidyl-tRNA synthetase" + /protein_id="ACL76295.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR004154" + /db_xref="InterPro:IPR006195" + /db_xref="InterPro:IPR015807" + /translation="MAKEVITPSILPGFMELLPADQIVFNNMLDIIKKTYEKYGFIPI + DTPMIEKSEVLLAKSGGETEKQVYRFNKGDNDLSLRFDLTVPLARYVSQHFGDLTFPF + KRYHIGKVFRGEKPQKGRFREFYQCDIDIIGNENLSLINDAEILSVIYSTFKALGFDD + FTIRINNRKVLNGFFEDLQVPDKTEVLRTIDKLEKIGSKEVLIELKSIGLSEENAQRV + LDFVGTKGSCRDIIMHLKEMKVQNEMFNEGINEMELVVDYIDSFKVPSSNYMIDLTIA + RGLDYYTGTIYETVLNQYPSIGSVCSGGRYDNLAQKYTTKKLPGVGISIGFSRLFYQL + REAGILGEMKRATPSKILVIPMNGTMGNALEIATKIRDEGVSAEIYFNEGKIGKKFSY + ADKLGIPYVIVVGEDEVNSGIYKLKDMATGEQTDLTVEQIIEKLKVQDNI" + gene complement(2305871..2307385) + /locus_tag="Ccel_1948" + CDS complement(2305871..2307385) + /locus_tag="Ccel_1948" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cth:Cthe_1341 coproporphyrinogen III oxidase" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76296.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MVENMEKMLIYNNVKKYFDYELEDVIKLFFTQNEIKKSDEPWDE + RSGAFLLCSMSYEDGNECFNISLKAKTFREIISLPCTDIVNSSDKLKVKEFKRILKRK + LFLLLTRYTGKVIPWGILTGIRPAKLVNEFIDRNMTKSEILSVLKEDYFVTENKSRLL + YEVAANQRELFADSRNNSISLYIGIPFCPTRCLYCSFSSSTIAQYKKMVDVYVDTLLK + EIKHTALLMESKGLVAESIYIGGGTPTSLNERQLSRLLNGIEECIDMTYLREYTLEAG + RPDTITIDTLKIIKNSRVSRISINPQTMNAKTLVRIGRLHKPEDVVKAFYAARDMGFD + NINMDLICGLPGENVRMFDDTLRKIKQLNPDSLTVHTMAIKRASQLTREMENYSLETQ + YVDSASMVDMARICAKEMDLAPYYLYRQKNILGNLENVGYSRKGLECLYNIQIMEERQ + TILACGAGAVTKVIFPMNRIERSFNVKSVEEYIGRIDEMLERKANILIEENNRY" + gene complement(2307379..2308005) + /locus_tag="Ccel_1949" + CDS complement(2307379..2308005) + /locus_tag="Ccel_1949" + /inference="protein motif:PFAM:PF00753" + /note="PFAM: beta-lactamase domain protein; + KEGG: cth:Cthe_1342 beta-lactamase-like protein" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain protein" + /protein_id="ACL76297.1" + /db_xref="InterPro:IPR000209" + /db_xref="InterPro:IPR001279" + /translation="MFVKPINGGLYDSISYMVGSGKEAILIDAGVPADKVMAAEKELN + TSIKKIILSHGHIDHLLYVDDIAQKTNAMVYIHIDDEQSMTDARFNISAYTGKASTFK + SKYEILREGNSIKVGELDFKIIHTPGHTCGSICIQVENLLFSGDTLFKFGYGRVDLPN + GNFSDIYNSIVEKLFILPGETIVYPGHGESTTITDEIRSNPIKNAVQW" + gene complement(2308023..2308472) + /locus_tag="Ccel_1950" + CDS complement(2308023..2308472) + /locus_tag="Ccel_1950" + /inference="protein motif:PFAM:PF02580" + /note="PFAM: D-tyrosyl-tRNA(Tyr) deacylase; + KEGG: cth:Cthe_1343 D-tyrosyl-tRNA deacylase" + /codon_start=1 + /transl_table=11 + /product="D-tyrosyl-tRNA(Tyr) deacylase" + /protein_id="ACL76298.1" + /db_xref="InterPro:IPR003732" + /translation="MRAVVQRVKKSTVTVNDKVAGSIGQGLMVLLGVGREDDDRDIEY + LSDKIMNLRIFEDENGKMNKSLLDIGGQLLVVSQFTLFGDCRKGRRPGFDKAGKPEIA + KELYERFVNKCREAGVLTETGIFQADMLVDISNDGPVTLLLDSKKEF" + gene complement(2308487..2310667) + /locus_tag="Ccel_1951" + CDS complement(2308487..2310667) + /locus_tag="Ccel_1951" + /inference="protein motif:TFAM:TIGR00691" + /note="KEGG: cth:Cthe_1344 (p)ppGpp synthetase I, + SpoT/RelA; + TIGRFAM: RelA/SpoT family protein; + PFAM: amino acid-binding ACT domain protein; TGS domain + protein; metal-dependent phosphohydrolase HD sub domain; + RelA/SpoT domain protein; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="(p)ppGpp synthetase I, SpoT/RelA" + /protein_id="ACL76299.1" + /db_xref="InterPro:IPR002912" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR004095" + /db_xref="InterPro:IPR004811" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR007685" + /translation="MIDSFSVLVEKVKKYDPGCNFEMLEKAYVVSKTAHMGQQRISGE + PYIIHPLEVAVILAEMELDCTALIAALLHDTIEDTTCTYDELKAQFGQEVAELVDGVT + KLGKIPFTTKEEQQVENLRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMSEGKQLEKA + RETLEIYAPLAHRLGISKIKWELEDICLRYLDPKGYYDLVEKINTKRKQREAYITKII + ETLREKTNELGIENAQIDGRPKHFYSIYRKMVKQNKTLEQIYDLFAFRIIVNSVKDCY + AVLGLVHELYKPMSGRFKDYIAMPKPNMYQSLHTTLIGPGGQPFEVQIRTWDMHRVAE + VGIAAHWKYKEGINNTKDSDKKFAWLRQLLEWQKDTRDESEFMETLKIDLFTDEVFVF + TPKGDVINLPVGSTPVDFAYSIHSAIGNKMIGAKVNGKMEPIDYKLKNGDIIDILTSS + TIHGPSRDWLKIVKSSQAKSKINQWFKKEKREENIIRGKEMLERELKKQGLTYTQLFK + TEWVEQVLKKYNFSSQEDLYAGVGYGAITANKVITRLKEEFKKTLKPEELEQILETIA + QTKNERKKKHTLESGVVVKGIDNCLVRLSRCCNPVPGDEIIGYITRGRGVSVHRSDCI + NVSAEQGEEERLIDVKWRTTNDVAYKADINLMANDRTSLLLDVTNCITEAKIPIKAVN + ARTTREQITVITLTLEITNTEQLEKIIKRLRKIDSVFDVTRNKQ" + gene complement(2310726..2311241) + /locus_tag="Ccel_1952" + CDS complement(2310726..2311241) + /locus_tag="Ccel_1952" + /inference="protein motif:TFAM:TIGR01090" + /note="TIGRFAM: adenine phosphoribosyltransferase; + PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_1345 adenine phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="adenine phosphoribosyltransferase" + /protein_id="ACL76300.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR005764" + /translation="MDLKDKLRHVMDFPKEGIDFIDITTVLQDPEAFRECMESFKTLA + EKMGDFDLIVGSESRGFIFGAPLAYRMEKGFVPVRKKGKLPYKTVREEYDLEYGKDEL + EIHSDAIAPGEKVLIVDDLLATGGTTEANIKLVEKLGGEVTGIVYFIELMSLKGRDKL + KGYNVDSIVKF" + gene complement(2311338..2313068) + /locus_tag="Ccel_1953" + CDS complement(2311338..2313068) + /locus_tag="Ccel_1953" + /inference="protein motif:TFAM:TIGR00644" + /note="TIGRFAM: single-stranded-DNA-specific exonuclease + RecJ; + PFAM: phosphoesterase RecJ domain protein; phosphoesterase + DHHA1; + KEGG: cbe:Cbei_4321 single-stranded-DNA-specific + exonuclease RecJ" + /codon_start=1 + /transl_table=11 + /product="single-stranded-DNA-specific exonuclease RecJ" + /protein_id="ACL76301.1" + /db_xref="InterPro:IPR001667" + /db_xref="InterPro:IPR003156" + /db_xref="InterPro:IPR004610" + /translation="MQKWILRNPKFDFKKMSKELGISELLCRIIVNRGIKDIDNARKF + IKADNHGLYDPRQMKDLVKGVSIIQEKIKNNKKIRIIGDYDVDGVVSTYILYKAFARC + GAVVDYAIPHRILDGYGINNSLIEKALNDGIDTIITCDNGIAAKEQIQYARESGMTVI + VTDHHDVPDTIPEADAIIDMKQPDCQYPFKLLCGAGVAFKFIQVLYEEMCIPREEESE + FYEFVAIATVCDVVDLTDENRILVRQGLNVISDTKNIGLCALLQKTGILGKNISVYHL + GFIIGPCINASGRLDWAMKGLELLLTDDEKEAMALATELYELNNERKHMTVKGVEDTI + ETIENSSLKSDRVFVVYKPDIHESIAGIIAGKVRERYNVPTFILTSGENCVKGSGRSI + EEYNMFEELSKCKELFTKFGGHPMAAGFSLDADKVDILRERINSITTLTDDDLIAKVY + IDAHIPLSAINIRTAEELNYLEPYGKGNSKPLFAEKNISIKRAGVFGNERKVLKLRLQ + GGTSFIDCIYFGDIDEFDAYVSERFGNTELQNMYKGRTNKIKLDMIFNIEINEYNGYK + NVQVVLQYYR" + gene complement(2313094..2314113) + /locus_tag="Ccel_1954" + CDS complement(2313094..2314113) + /locus_tag="Ccel_1954" + /inference="protein motif:TFAM:TIGR01128" + /note="TIGRFAM: DNA polymerase III, delta subunit; + PFAM: DNA polymerase III delta; + KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase III, delta subunit" + /protein_id="ACL76302.1" + /db_xref="InterPro:IPR005790" + /db_xref="InterPro:IPR010372" + /translation="MSFDILKKELKQNKLKNVYLFYGQEDYLIKYYMNTIANLIVNEE + TKDLNYIYLEGKKDTESLIENCETMPIFSEKKLVIARNSGFFKSKKGGSEGGSDKKSG + NNKLADYIENMPSYTCLIFVEQEVDKRIKLVNSVKKKGLVVEFNYQKPADLVKWVVKV + FKSYKKTIDNIAASYIVENSEYSMAELLNEIDKIVNFIDDKQHISLEDVQSVCTKTIK + SRIFDLTDAVAEGNISKALMLLNDMASLKEPMQKIMYMIVRQIRMVYRVKLLKEQGIR + EDAAAKQMGLTPFVASKVLRLSKYMEIGILERAMYYSLELDESIKTGRMTDRTAIELL + IASMK" + gene complement(2314159..2316519) + /locus_tag="Ccel_1955" + CDS complement(2314159..2316519) + /locus_tag="Ccel_1955" + /inference="protein motif:TFAM:TIGR00361" + /note="TIGRFAM: DNA internalization-related competence + protein ComEC/Rec2; + PFAM: beta-lactamase domain protein; ComEC/Rec2-related + protein; + KEGG: cth:Cthe_0606 DNA internalization-related competence + protein ComEC/Rec2" + /codon_start=1 + /transl_table=11 + /product="DNA internalization-related competence protein + ComEC/Rec2" + /protein_id="ACL76303.1" + /db_xref="InterPro:IPR001279" + /db_xref="InterPro:IPR004477" + /db_xref="InterPro:IPR004797" + /translation="MNIKRPLCLFVVSFILGILIVNAIGLNQFLIVSAVILLAITCLL + KKLGNYKIIIFVSLTFVIAGGMFLYYAEYRYSGSFDQFYGKLVEMKGYVDSEVQNSKN + SKSTFVFKTESVIYKNKTFKVNNSILVYVNNLTPEIGYRTKISFTGVVEKPKPATNPG + GFNYRRYLASIGISGRIYLYEASDIHISGQKGGGYANRLGYVIKNKVIEIVSYSLDKN + QAGLLEGMLIGYKDGLDENAFKAFSKAGLTHIMVASGMNVAFIILPFAFIFKKLRMSN + LSANLITIFILVLFVFVTGFSASVVRAVIMGIIILVGRIIMREPDIYTSISAAALILL + AINPYTLFDIGFQLSFGATLSLVMFYQQIKTFIDSKYIPGVISDTLAATLAAQLGVVP + VTLYYFNNFSTFSILSNILVVPLVEVVTIIGFIMVFAGLLNINLAVIIGYINNTFLSF + ILFVTEVTSKIPFSLLKLPTPTFGMVLFYYLLLIYIFKARSYCKDKKYIKHITIAIVV + SAIIISGVRALLPEPLEITFLDVGQGDSTFIRTAHGTKVLIDGGGRASNSKSEFDIGE + SVMIPYILDKGTKRVDIVIASHGHSDHTEGLETVLREMAVGTVILPETDGRGLEKINT + ICREKNISVIKCKQGDRIRLDNETIFEVLNPLPYKIDSFAQEDLNESSLVLKLVYRNI + KVLFTGDSGIQSEQRMIKQGLDLTANVIKVGHHGSPGSSGQEYIKKVQPYYAIVSVGR + NNFGHPSQFAIDTLEGNGAKLLRTDEKGAIILTSYGDGFNVKTMLP" + gene complement(2316649..2317539) + /locus_tag="Ccel_1956" + CDS complement(2316649..2317539) + /locus_tag="Ccel_1956" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; SH3 type 3 domain protein; + SMART: SH3 domain protein; + KEGG: tte:TTE0880 cell wall-associated hydrolase + (invasion-associated proteins)" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL76304.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR003646" + /db_xref="InterPro:IPR013247" + /translation="MTGKITKVLVGCIFAFSLVLVCSAVMAASQAAQIQGTGVNVRKG + PNTSASIITKLSNKRVSVLDKSSGWYKISFDGKTGWVSDDYIKVLATKGSINANGVNF + REGADTSSKIISSLKKGTSIQILDTLTEWHKIKVGSKVGYVSKKFVSSAANSTKTSRS + TEAATFVSEEDNSLVGRVIAYSKKFIGVKYVYGGKSPSGFDCSGFVGYVFKNFGISLN + SSSSSMYSNGTKVSKTALRPGDLLFFDASSRKSAGAIDHVGIYLGNNQFIHASTSKGK + VLIQSLSEYQGTYIGAKRVI" + gene complement(2317779..2318312) + /locus_tag="Ccel_1957" + CDS complement(2317779..2318312) + /locus_tag="Ccel_1957" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: cth:Cthe_0603 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL76305.1" + /db_xref="InterPro:IPR000182" + /translation="MIKVDILKNDLRIKNINYGSIENIYSFYQNTDVFKYATGVYGSI + SYDTFSNQIAEFISQNNVFFLDIILETKNSSINRNSIGLIKGSLSVKEKILWINSIAI + DLPYQSKGYGQKVISILVDHFKNKYNVNTVGLSVSKSNTLGINFWEKCGFSECDFETL + YGFHKITEHAVIMWKKV" + gene 2318470..2318697 + /locus_tag="Ccel_1958" + CDS 2318470..2318697 + /locus_tag="Ccel_1958" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76306.1" + /translation="MCQVFNEELFECSFITISLLLEIFKKNLIDITDFKSNTEIKISY + IQDNLEHINQIERRSLIESVIRECIEINRSF" + gene 2319043..2319513 + /locus_tag="Ccel_1959" + CDS 2319043..2319513 + /locus_tag="Ccel_1959" + /inference="protein motif:PFAM:PF01047" + /note="PFAM: regulatory protein MarR; + KEGG: ckl:CKL_0101 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MarR family" + /protein_id="ACL76307.1" + /db_xref="InterPro:IPR000835" + /translation="MNSETENSLFIVDELFRKLFNKYNKLESKKFFSKTLDDLTVIEI + NTILVIGHGEEDKKMSEIANTLGVTFGTPTVTVDRLIKKGYVIRRRDNEDRRQVFISL + SKTGKDVFESIIMIRNILAEKIYGILSEDERKVLINILSSLNSNFDEIFSFKNK" + gene 2319623..2321836 + /locus_tag="Ccel_1960" + CDS 2319623..2321836 + /locus_tag="Ccel_1960" + /inference="protein motif:TFAM:TIGR03062" + /note="TIGRFAM: YhgE/Pip N-terminal domain protein; + YhgE/Pip C-terminal domain protein; + PFAM: ABC-2 type transporter; + KEGG: cpy:Cphy_0609 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="YhgE/Pip C-terminal domain protein" + /protein_id="ACL76308.1" + /db_xref="InterPro:IPR013525" + /db_xref="InterPro:IPR017500" + /db_xref="InterPro:IPR017501" + /translation="MQTLKKYKKFAVIVAVILIPLVYSFFYLDAFWDPYSKLDKLPVA + VVNQDNGATIDGENRNLGKEITDNLKTDKNLKWVITSESDAKDGLENRRYYAMISIPG + DFSKNISSAADIDKTQGNLIYTVNEKGNYLASQVLSRVTLEFKDKISKSVSEEIVGTL + LDQIKDLPTSLKELDDGLKEIKDGAELLYDSNGKIVDGQKNFNDGVNKLNNGLADANN + GSKTLIQGSKQLSDGAELFYRNLSGGSGKMTALVNGSNTFMSGLSNLNSGLNQLNSSI + TEAAPQISQLSKGTLDLNSGVQSYTSGVDKYIESVNKVSQTQSALANSIQKYVASHPE + ALTDPNFKAVIATLEASKSVPEQLKTAGGQLSSAGKLLTDGSGKVAGGVSQLTTQLSS + AAQGINKLAAGSNELNKSYPMINQGILDTASSIKTASDKSKELSSGASSVNDGVAKLS + SGISELAAGSEELSKNSGVLLDGETKIQDSLGKLKDGVTEASSGVSSSLLKADGKLNG + TEGLKEYAADPVKITEKKVYGIPDYGTAFTPYFVSLSLWVGALLMFFAIYLDEEVRFR + KFSSKSKGIMRFFAYTLIGIAQALVLDFVIVKGLHLEVANMGLFVLTSIIISLSFTSI + MRFLLVQLRDVGKFLAILLLILQLTSCGGTFPMELVPRFFNVLNPFMPMTYSVNALRE + VIAGINNGFLAQNLIVLVTVMIGFLILNLVVSKLRFGSISSDSDDFVKISEEVSA" + gene 2321999..2322148 + /locus_tag="Ccel_1961" + CDS 2321999..2322148 + /locus_tag="Ccel_1961" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76309.1" + /translation="MRNRKIDDDSLLTVFERIINSIPIRFHSNNRENSYDDSKMSEED + IEKFR" + gene 2322311..2323579 + /locus_tag="Ccel_1962" + CDS 2322311..2323579 + /locus_tag="Ccel_1962" + /inference="protein motif:TFAM:TIGR01326" + /note="TIGRFAM: O-acetylhomoserine/O-acetylserine + sulfhydrylase; + PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent + protein; + KEGG: cbt:CLH_0332 O-acetylhomoserine + aminocarboxypropyltransferase/cysteine synthase family + protein" + /codon_start=1 + /transl_table=11 + /product="O-acetylhomoserine/O-acetylserine sulfhydrylase" + /protein_id="ACL76310.1" + /db_xref="InterPro:IPR000277" + /db_xref="InterPro:IPR006235" + /translation="MSWKIETKCLQEGYKPENGQPRVLPIYQSTTYKYDSTEHVAKLF + DLSVPGHMYSRISNPTVECVENKIAALEGGVGALCTSSGQAASLISILNICEAGDHFV + CSGTIYGGTINLFGASLKKHGISVTFIDQDSSEEEIQKAFQPNTKALFGESIANPKIS + VLDIEKFAKIAHKNNVPLIIDNTFATPILLRPIEHGADIVIHSTTKYMDGHAVCIGGV + IVDSGNFNWESGKFPGLTEPDETYHGMVYTRDCGKAAYITKARVQLIRDYGCCMSANN + AFLLNLGLETLHLRMERHCQNAKKVAEYLATSDKVISVSYPTLPGDPYHSLAEKYLPK + GCSGVVSFRIKGGREGAVKFMDKLKLAAIVVHVADCRTAVLHPASSTHRQLSDEQLVQ + AGIDPGLIRFSVGLENVDDIIVDIKQALED" + gene 2323665..2324147 + /locus_tag="Ccel_1963" + CDS 2323665..2324147 + /locus_tag="Ccel_1963" + /inference="protein motif:PFAM:PF01037" + /note="PFAM: regulatory protein AsnC/Lrp family; + KEGG: dsy:DSY2399 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AsnC family" + /protein_id="ACL76311.1" + /db_xref="InterPro:IPR000485" + /translation="MQFTFDELDKQILELLQADPVISNKDLAEKVGLSPSACLGRTKR + LKEIGVIKKFAAVMDEKKLGYEVISFTFVNLSPHNRDITNAFLSKINETPQILECYNI + TGSWDYLIKIAAHNLADCRDFLIDTLLSFPGVNKIETSMVLSTDKQSFCLPVDSVVEK + " + gene 2324270..2326048 + /locus_tag="Ccel_1964" + CDS 2324270..2326048 + /locus_tag="Ccel_1964" + /inference="protein motif:PFAM:PF05833" + /note="PFAM: protein of unknown function DUF814; + Fibronectin-binding A domain protein; + KEGG: cth:Cthe_0581 fibronectin-binding A-like protein" + /codon_start=1 + /transl_table=11 + /product="Fibronectin-binding A domain protein" + /protein_id="ACL76312.1" + /db_xref="InterPro:IPR008532" + /db_xref="InterPro:IPR008616" + /translation="MPFDGIVTKCIVNELNDLLSGGRIDKVFQPENDEIVMMIRSKGQ + NYRLVASANASNPRLHLTTLQKENPAAPPVFCMLMRKHVAGGRLLNISFHDYERIITL + NIESVNELGDLTVKRLVVEIMGKYSNIILLNSENKIIDSVKHVDSDISSVREIMPART + YLLPPAQNKELPENTEVDKIFNEENIKGAKHPEGLILNTVKGFSPYTCRDICASAGVP + SKTPIGELNDSDKEKIKVALAKYIDKIKSNNFSPCIVYEDKSMLRPIDFYCFEPSKEV + FYKSYELLSTALDQYYMLRDTNERLGQKMGDVLKVVKNGIERCQKKTTMFNEKLREVS + ERDKLQLYGELITANIYCIAEGAKSARVLNYYSANEEYVDIPLNEYKSAQDNAQKYFK + KYSKAKSTHLNVTKQLAETLSELEYLQSVLTMLGNCNSRQEIDEIRQELIDQGYIRQS + YKNAKNKQDKPSSPLEFISSDGFQILVGKNNKQNDLLTLKTAASNDLWLHTKNIPGSH + VIIRTERNTVPDSTLLEAATLAAYHSSAKMSYNVPVDYTTVRNVKKPSGAKPGMVIYE + NFKTINVTPEEEKVMKIINNKNIFSK" + gene 2326066..2327247 + /locus_tag="Ccel_1965" + CDS 2326066..2327247 + /locus_tag="Ccel_1965" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aminotransferase class I and II; + KEGG: cno:NT01CX_0284 aspartate aminotransferase" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class I and II" + /protein_id="ACL76313.1" + /db_xref="InterPro:IPR001176" + /db_xref="InterPro:IPR004839" + /translation="MISKKISHNLANSSMIRAMFEEGEELRKIYGADKVYDFSLGNPD + PEPPVEVKSALRELAGSGELKMHAYMNNAGYPEVRETIAKKINSETGLNLSFNNVVMT + VGAGGALNVVLKTLLNPGEEVIVFAPFFVEYTSYIDNHGGKTVVINTDFKTFLPDPEL + LRTKITPNTKAIIINTPNNPTGVVYSRDTLNSIAKVLEDKSKEYGDTIYLISDEPYRK + LAYDAEVPNILTIYKNAIMIDCFSKSLSLPGERMGYIATNPDAEDINTLMNGFIYCNR + VLGFVNAPALFQKVIAKSINSTVDMNIYKERRDLLYNSLTEFGYECVKPDGAFYLFPK + SLIPDDVEFKNRALKYNLIIVPGSGFGTPGYFRLAYCVSLETIKNSLPAFEALAKEFR + K" + gene complement(2327309..2327716) + /locus_tag="Ccel_1966" + CDS complement(2327309..2327716) + /locus_tag="Ccel_1966" + /inference="protein motif:PFAM:PF06983" + /note="PFAM: 3-demethylubiquinone-9 3-methyltransferase; + KEGG: bcl:ABC0853 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="3-demethylubiquinone-9 3-methyltransferase" + /protein_id="ACL76314.1" + /db_xref="InterPro:IPR009725" + /translation="MKSIIPNISVDNCREAIEFYKRIFGGEIKNVKIADKDGMFKGHE + GKVMHSELYIGKNCIIYFTDFFGDKLQGSHIQIILGMDSKQEIEKVYADLLKEGKADY + ELQKTFWGAYHAVVKDKYGITWGLNYAENGGNK" + gene complement(2327740..2328645) + /locus_tag="Ccel_1967" + CDS complement(2327740..2328645) + /locus_tag="Ccel_1967" + /inference="protein motif:PFAM:PF04015" + /note="PFAM: protein of unknown function DUF362; + KEGG: cpy:Cphy_1972 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF362" + /protein_id="ACL76315.1" + /db_xref="InterPro:IPR007160" + /translation="MRKDRIWKNSTVAITRNANEAVAIKEAVELLQIIPTIGKNDVVV + ITPNWVNNKKSPDSGVVVGPESLRQIISLIKQRQPKRIIVATGTADGETVDVMNNVGF + GKVIRDEGVEFIDLNHGPFIRINLNHSVVSSTNINKLLNEVTILISFTQLKQHEEATI + SAAIKNIALGWPPADEHGHPKKNCGIHKELHGFISAMAEQIPIDLSIVSASPAMIGTG + PTKGIARHTGLVIAGCDPVATDTVAARLLGFRPQAIRYLFECSNKKIGESDIEKITIE + GIPLVEAENIFSQAAYGDGLSVDKA" + gene complement(2328673..2328840) + /locus_tag="Ccel_1968" + CDS complement(2328673..2328840) + /locus_tag="Ccel_1968" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76316.1" + /translation="MIYILMFLMLLSGYYTFTFGISQIKRKNILGGFSTIVVSIFGTI + IPMVILYMKNK" + gene complement(2328852..2330165) + /locus_tag="Ccel_1969" + CDS complement(2328852..2330165) + /locus_tag="Ccel_1969" + /inference="protein motif:TFAM:TIGR02887" + /note="TIGRFAM: germination protein, Ger(x)C family; + PFAM: spore germination B3 GerAC family protein; + KEGG: cth:Cthe_0669 spore germination B3 GerAC like" + /codon_start=1 + /transl_table=11 + /product="germination protein, Ger(x)C family" + /protein_id="ACL76317.1" + /db_xref="InterPro:IPR008844" + /translation="MRKVYKVIILAMAFIYILTGCTTDSKNIDDQAYAIMIGIDKGVE + NKIRLTVQFPTYKGGGSSSSSGGGGGGGGGGSEEKESGQVDGTIVTTIESSTVLEAIN + MLNTSTSRHISLVHCKAIIFSEKLAYEGINFYLSDFARFRETRRIATIGVCRGKAEDF + IIENKTLIGENISKSIELAFSQSQNSGLFPTVFFTNFYKNTISPYSQAHALYVGLNNF + KNLKNEKNGEEPPLKTEEKFYPGEVPKKGNLRQEMIGTAVFNGDKLAGTLNADETRYF + LMVENKFKHGILTIEDKMNPGRAIPFDLRPGRKTDIKVGFDKSTPVIDINLNIEADIV + GIQSGLHYESLDKIQELNKLLHDSIEEGVRKTVQKVQKQMGTDVFGFGYYAADKFMTI + NDFEKYNWLSHFIDAKINVSVYTNIRRTGLMAESMPVRYRDKIAK" + gene complement(2330144..2331256) + /locus_tag="Ccel_1970" + CDS complement(2330144..2331256) + /locus_tag="Ccel_1970" + /inference="protein motif:TFAM:TIGR00912" + /note="TIGRFAM: spore germination protein; + PFAM: Spore germination protein; + KEGG: cth:Cthe_0668 spore germination protein" + /codon_start=1 + /transl_table=11 + /product="spore germination protein" + /protein_id="ACL76318.1" + /db_xref="InterPro:IPR004761" + /translation="MIKEGKFGTAEAIYLITLVIASKTFYTSIRVMIKTTGTAAWYMT + LVSCITSILLFLIISLVMKRFPGKNLAEIFELVTGRFFGKILTLLFSMYFIYYSGSSL + REFLEMIKAYNLPYTPPSLIITAFMIVVVVLAYIGLEGIARLAAVSFYPIFTGIVIII + FLAYPYYNVRAIFPIGGYGIAETIRSGFFRSSAYDEIIILAFIINSINGVKTFKKVGI + YSIVISGITFSITTLCNIMAFDYTMGSENVSNLFQLARVIFFSRFFQRIESVFLFIWI + IASLITVGLAFYIAISCFCKAFRIENHRPLILQFSFLTFMVTLLPEGLIEVSKTNIVF + LREYSMTFIYGVPILVLLISVIFGKKGDRQCEKSIR" + gene complement(2331249..2333027) + /locus_tag="Ccel_1971" + CDS complement(2331249..2333027) + /locus_tag="Ccel_1971" + /inference="protein motif:PFAM:PF03323" + /note="PFAM: GerA spore germination protein; + KEGG: cth:Cthe_0667 GerA spore germination protein" + /codon_start=1 + /transl_table=11 + /product="GerA spore germination protein" + /protein_id="ACL76319.1" + /db_xref="InterPro:IPR004995" + /translation="MSKKKGFIKTLFSYITYKEKKPVKQFYIPEIDNEVTSENKNGQE + KNTSMKRDGSKNRKIKRPVPVAESSRENKPQYEKADDEKISTNIEENIQYIKHKFNFP + SNKDIIIRELTVAKKYKAFIAYIDGMVDRITINNFILRALMVNDDKFQEDSDDECKLD + FIMSNILQTNQAKKVDSPDEFLYEILSGNTLLYVNGCNFYITNETKGYDKRGVDKPLI + EGVVLGSQEAFNENLRTNVTLIRKLIKNNNLTTEFIKVGNVNKQLCAIMSIKGITNPA + IVEEVKRRIKNIKSDMVLGDGVLEQFIEDNPYSIFPTILSTERPDRAAAHIMEGKVAI + LAEGAPFAKIVPVTLLTIMHSPEDSYMRWPYGTLIRLIRFVAAFIATLLPGIYVAITN + FHQEMIPTELLIAIAKAKENVPFPTIVEVVLMELSFELIREAGIRIPGIIGNTLGIIG + ALILGQAAVQANIVSPVLIIVVSVTGLGNFAIPNYSMALAARVSRFCFIILGALLGFY + GISIGIALFAILITNIKSFGVPFFAPIAPKTKESNDLFFKKPAWQQIYRPDYVNALKQ + KRQAKVSRQWTDEEPKYGYERDEEDD" + gene complement(2333201..2334706) + /locus_tag="Ccel_1972" + CDS complement(2333201..2334706) + /locus_tag="Ccel_1972" + /inference="protein motif:PFAM:PF04616" + /note="PFAM: glycoside hydrolase family 43; + KEGG: cth:Cthe_0661 ricin B lectin" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 43" + /protein_id="ACL76320.1" + /db_xref="InterPro:IPR006710" + /db_xref="InterPro:IPR010916" + /translation="MIKKLTALFMVIFTVLVLGTSVAFAEIGIINNGTNFGGVQAHGG + SIIKVGETYYWYGENRDTNNLFVSVKVYSSTDLVNWTDMGNALSRTSAAELNSCNIER + PKVMYNASTNQYVMWMHYENGRDYTLARAAVAYSTSPTGPFTYIGSFRPNNNMSRDCT + TFVDTDGTGYFISAANENADLVVYRLTSDYKSVASQVVTLWPGQYREAPCMFKRDNIY + YLITSGCTGWGPNQQKYATSTSISSGWTGLTNLGNSTCYDSQGACVFPVGRNFVLLTD + RWAGAWGGKVNDSSYLMMPLLINGTSVSLNYTDTVKVAAEFGAIANDYHRYTFEGVKT + NADPYQWNISQPASTDIQVLSVDGDKALKMSDSTTSGYCYAYKDFPAKKGIVTFNVGF + KFENTGRWDRIRLYNGNNIGIDIINFEEGLGWITGTSTRNVLQKVSSNTWYDLKIVAD + TSNQKFDVYINNMLIKTGCAFTGSITEFDRIALDTGNSFTNTAVYDDIIIK" + gene complement(2334880..2335086) + /locus_tag="Ccel_1973" + CDS complement(2334880..2335086) + /locus_tag="Ccel_1973" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76321.1" + /translation="MAWSTCPKCNSHNFEMVEKSMAGTNFNLSFVQCLVCGTVVGVTD + CNNFNNRLNELEKKLSSLSGKVNS" + gene complement(2335319..2336212) + /locus_tag="Ccel_1974" + CDS complement(2335319..2336212) + /locus_tag="Ccel_1974" + /inference="similar to AA sequence:KEGG:Csac_1811" + /note="KEGG: csc:Csac_1811 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76322.1" + /translation="MGLFSSNYNKPGPGVEKDAPPKPRFFIFFEVLKRKFWHLIRINL + LYILCNIPALLLALYVSTVYLQKINIDNGGFSDFYIRVFLAAIMMFLSVITIGPVQAG + FTYIMRNYSREEHAFIWWDFKDNFIKNFKQGMIITGIDFVVMYILGIALNFYLSMEGI + LSTAASAFVFLSIVIYCIMHLYLYPMLVTVKLSIKNLYKNAFIFSILKLLPNILFLIL + NILIAYATFYNPVIGVILYLLIIPSVIGLMNNFFVNPIIKRYVVDPLQSTAEEIGEDE + EDTDDDNGEGFYKKELPEEND" + gene 2336432..2336514 + /locus_tag="Ccel_R0050" + /note="tRNA-Leu2" + tRNA 2336432..2336514 + /locus_tag="Ccel_R0050" + /product="tRNA-Leu" + gene 2336938..2338302 + /locus_tag="Ccel_1975" + CDS 2336938..2338302 + /locus_tag="Ccel_1975" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cja:CJA_3689 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76323.1" + /translation="MYDNVKLNTARKKDTSYIQKQPKHTPTRLMKSSDPAVIIQRLRR + FPQSFTKADAMVLQRTIGNKAVCKLMGEIGLFNNSPASIQQEALPEKLTQMKKEKNKT + GLSDNLKAGVEKLSGLSMDDVRVHYNSGKPERLGALAYTQGTDIYVSPGQEKHIPHEV + WHVVQQVQGRVKPTIHMYGAAVNDDAGLEREASEMGKKACKETIPREKGKTNDHIWLS + HNPIIQGQWLNFGIGQFPDIKTMENRGENQVTSFPQKNTVQSQNVLRIHTKFLGDPRV + RDFISRTCKHKPVINERKEPIQMVVLASFYGAPVQSWAILQAPLAPGPLGAPNPPGWV + GNAHPNHHQRSHLIGGQFGAPKTLNNLVTLTDGSNHPGMSVHENILAAAIANNPAHLF + LYHVTTDNTVFAATNSVGIPTVATPAPQGVIMDAVNLTTGIPVLQAVYVPNNIFQNHA + GCVD" + gene complement(2338384..2340357) + /locus_tag="Ccel_1976" + CDS complement(2338384..2340357) + /locus_tag="Ccel_1976" + /inference="protein motif:TFAM:TIGR00575" + /note="KEGG: cpy:Cphy_2927 DNA ligase, NAD-dependent; + TIGRFAM: DNA ligase, NAD-dependent; + PFAM: BRCT domain protein; NAD-dependent DNA ligase + OB-fold; NAD-dependent DNA ligase adenylation; + SMART: Helix-hairpin-helix DNA-binding class 1; + NAD-dependent DNA ligase" + /codon_start=1 + /transl_table=11 + /product="DNA ligase, NAD-dependent" + /protein_id="ACL76324.1" + /db_xref="InterPro:IPR001357" + /db_xref="InterPro:IPR001679" + /db_xref="InterPro:IPR003583" + /db_xref="InterPro:IPR004150" + /db_xref="InterPro:IPR013839" + /db_xref="InterPro:IPR013840" + /translation="MADKIQLMKDKIEILDRAAKAYYQENTEIMSNIEYDKLYDELLE + LEKETGVVLSNSPSIHVGYELLSNLPKERHEKPMLSLDKTKDVGTLKEWLGTQKGILS + WKLDGLTIVLTYQDGHLVKAVTRGTGEEGEVITNNARVFRNLPVTIAYKGTLILRGEA + IIRYSDFIKINNEIADVGVKYKNPRNLCSGSVRQLNNKVTSERNVYFFGFSLVKADNV + ELDNSRASQMNWLKNQGFDIVDFKEVTSSNIEETVQWFSQNIEANDFPSDGLVLTFED + IAYGESLGSTAKFPRDSIAFKWRDEIKETTLLNIEWSPSRTGLINPIAIFEPVELEGT + TVSRASIHNISIMEGLELGIGDTIGVYKANMIIPQISENLTRSGMAPIPEECPVCKGK + TEIKQENGVKTLYCVNNECLAKQIKSFTHFVGRDAMNMEGLSEATLEKLIAKGLIKEL + ADLFHIEKYKNEILELEGLGEKSFNKLITSINKARKTTAVRLLYSLGIPNVGLSNAKL + ICRYFKYDWNKIENAEFSELIQIGGIGDIMAESFIRFFSDEKKKVIVQDVLNELELEE + VQLSQSEQIFENLNFVITGSVEQFKNRDELKDVIEEKGGKVTGAVTSKTNYLINNDNM + SNSSKNKKAKELNISIITEAQFLEWLNNGVRPE" + gene complement(2340429..2341133) + /locus_tag="Ccel_1977" + CDS complement(2340429..2341133) + /locus_tag="Ccel_1977" + /inference="similar to AA sequence:KEGG:Cthe_1036" + /note="KEGG: cth:Cthe_1036 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76325.1" + /translation="MKQTGRFLIIFSSLMLLWNTFLVKPIKLFTVFMHELGHAFMAIA + TGSGITELKIYFNESGHIMSLPKSWWSSFFIANGGYLGSVLFAILILVLKNTRFRKYI + IGVIAIIFLAFTFKYSGIVSFTMLYSVIFAVFALILYMIQNETLNEWVIEIIGIGSVT + YAIYDTLVDTVIIQLGYQFGFFRIGSMPVTDAVSLARLTHIPAIVWGLIWVGISIFAV + YSVFLKNKSRPIRKRY" + gene complement(2341223..2342230) + /locus_tag="Ccel_1978" + CDS complement(2341223..2342230) + /locus_tag="Ccel_1978" + /inference="protein motif:TFAM:TIGR01441" + /note="TIGRFAM: spore protease; + PFAM: peptidase M63 germination protease; + KEGG: cth:Cthe_1038 germination protease" + /codon_start=1 + /transl_table=11 + /product="spore protease" + /protein_id="ACL76326.1" + /db_xref="InterPro:IPR005080" + /translation="MINLSNRYTDLAIEAHEIFMNSSEAKQQAKEGKTPPGVVIENAG + DEDVKITRVHITSRTGEASIGKPMGNYITLEVPELKDNNEDVNKKTIDAMAKELRDIL + KLKEGSTTLVIGLGNWNVTPDALGPKVVSNLMVTRHLLQYVPEHVDEGVSPVCAISPG + VLGITGIETGEIVKGVVDRLKPDALIAIDALAARSMERVSTTIQIADTGIAPGGGVGN + KRMELSEKTLGMPVVAIGVPTVVDAATLTNDAMDLVIDSLMNESPKDSGFYNTLKDID + RDQKYELIKEALNPFVGHLIVTPKEIDDIISRVSKVVANGLNMALHQGITLGDVGRYI + N" + gene 2342482..2342739 + /locus_tag="Ccel_1979" + CDS 2342482..2342739 + /locus_tag="Ccel_1979" + /inference="protein motif:PFAM:PF01649" + /note="PFAM: ribosomal protein S20; + KEGG: cth:Cthe_1039 ribosomal protein S20" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S20" + /protein_id="ACL76327.1" + /db_xref="InterPro:IPR002583" + /translation="MPNIKSAIKRVKVNEAKTLENTIRKSALKTTIKKCKEAIVTGEN + TSDAYTAATKALDKAAAKNILHKNTAARKKSRLAKALNAAK" + gene complement(2342792..2343934) + /locus_tag="Ccel_1980" + CDS complement(2342792..2343934) + /locus_tag="Ccel_1980" + /inference="protein motif:TFAM:TIGR00539" + /note="KEGG: cth:Cthe_1325 coproporphyrinogen III oxidase, + anaerobic; + TIGRFAM: oxygen-independent coproporphyrinogen III + oxidase; + PFAM: Radical SAM domain protein; HemN domain protein; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="oxygen-independent coproporphyrinogen III + oxidase" + /protein_id="ACL76328.1" + /db_xref="InterPro:IPR004559" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR010723" + /translation="MLNKDRAGLYIHVPFCSSKCNYCDFNSYTGKIDHADNYFKSLKK + EIELYKAELRHYIINTIFIGGGTPSVVNEQYILEILEKCRTEYNISENCEISIESNPG + TLSNEKLKAYKNAGINRISIGLQAYQDKLLKYLGRCHSHKDFTESVKNAKSAGFENIN + GDIIFGIPGQSLGDWKETLDYLVSLGINHISAYSLKIEEETKFGRMEEQGSLVPVEDE + LDREMYHYAVDYLNENGLKQYEISNFAKEGYECKHNLIYWKCVDYLGLGAGAHSCLKN + TRFSNQISIEGYIDYLNRGEKPLYEKNPLEFTDKMSEYMFLGLRLTAGVSGKEFYELF + NRNMFTMYKDIFARLENKSLIKITGDTVKLTRLGLDLANQVFLEFV" + gene 2344037..2345404 + /locus_tag="Ccel_1981" + CDS 2344037..2345404 + /locus_tag="Ccel_1981" + /inference="protein motif:TFAM:TIGR00797" + /note="TIGRFAM: MATE efflux family protein; + PFAM: multi antimicrobial extrusion protein MatE; + KEGG: fnu:FN1789 Na+ driven multidrug efflux pump" + /codon_start=1 + /transl_table=11 + /product="MATE efflux family protein" + /protein_id="ACL76329.1" + /db_xref="InterPro:IPR002528" + /translation="MENNIITKDTTKSFYKMAFALVLPMAVQNLINVGITSIDVLMLG + KVSETVLSAASLAGQVQFIMTLIFFGLTSGAAVLTAQYWGKGDTKSIEKIMGICMRFS + LLVAVFFTAVVLLFPAKVMGIFTNEAPVIAEGVKYLKIVALSYIFMSITMIYLNIMRS + VERVIISTIVYLVSLIVNLVIASTLIFGLFGFPKMGIVGAAIATIASRGVELVIVIIY + HLKFNKVIKFSLSYLFVHDKFLFKDFLTYSIPVTLNELMWGAGVATNAIVIGHLGSSV + VSANSVAQITRQLATVIAFGLANATAIIVGKAIGEKNYEGAKLYANRFIKLSIIAGIA + GGIIILISRPLLISVLNLAPVTRGYLSVMMFVMSYFVVAQAYNTTLIVGVFRGGGDTK + FGLALDISTMWGGSILFGALAAFVFKWSIPIVYIILMSDEIIKIPLVLWRYRSLKWLR + NVTRD" + gene complement(2345505..2347139) + /locus_tag="Ccel_1982" + CDS complement(2345505..2347139) + /locus_tag="Ccel_1982" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: cbe:Cbei_4431 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL76330.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MFRLLVVEDEEMIRNKIIYNTNWKEHGVIEVFQASNGLEAIDIV + RNNNIDIVITDIQMPEMNGIELIREIRSLNRGIKCIIITAYAEFEYAKESVKLNVNDY + ILKPFKSKDLLYIVKKLLEEIVRERNERVEVENLRRQLRENKKALREKLLNDLLSNSY + IGDVDDDLNYLELLELKNREYFIAVININNFMELIKEEDEEQKYIVNLSFYNLVTKFL + SSLATDSSNTLDTKLVYSVINYKIDQIVIAVYNDIDKFIPAFEDLIKAGRRELGFCMT + TGIGNKYKNLTDMHISYKEACSAALLDRVYGRGNVYIFNDLNFGNKVYSKQLHILGDT + KLYDDLKIGAFPEIKKDIENVITQIKSSKLELDAINTIIYNIILLSCKTINELGYDVF + EIMGEDFNLHFDVKEINNLVQLEEWLLSFFYKVNEYINRKRSNRNEKLLSKVKDYVDR + NYSENITLTSISKDFGISSGYLSVLFNDYIGQNFIDYLTNLRIQNAKNLLKSTDLKIY + EIADRVGYRDAYYFSTAFKKSVGINPTDYREKLNIL" + gene complement(2347144..2348937) + /locus_tag="Ccel_1983" + CDS complement(2347144..2348937) + /locus_tag="Ccel_1983" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: cbe:Cbei_4458 histidine kinase internal region" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL76331.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MGDKIVMKDNSFFGLFRKFSIYSIRSKMTICFLALGLVPILLFG + IISYHLYLQNLHKNVTSYSEQVIERVDKNLETYISDIENIMRLKSNYYFQQYSKLNEA + GDIEGNRKYTVRIWETFDSVKQMKTDLVDIRFISSSGSTISCYGRYWVDVSNEPLYRE + LINKKSSIVAIQPPHLNALNKKVFSIGQAVNRNINGNIGIMAIDIDINFLKKICSDIK + LGETGFVFFEKDGKVVFSPQSSDKHGYSNNIIQNPKLMDSENGSFIDSINNTNYIITY + KTSAITGWKIVGVSPEAEMTSGVIMLSKVFFWLITLIIIIILLLTIYLTSVLTNPMRK + LRSTMKQASENDLSIYADIRTRDEIGQLASSFNKMMNQIRELMDKVKEDQQKIRVMEM + KAMQELIKPHFIYNTLDSIIGLLEQNRNDDAIDIIDSLGKFFRTSLSHGREVVLIREE + IDHIRSYLMIQQFRFSNKFDYLFELDDVIYNFKTVKLILQPLVENSIYHGIRSLDKKG + LIVINGYLKDDQIIFEISDNGEGIGEEKIAQLNRIMSGEEEVEDQNMYFGIRNVNERI + KLNFGSDYGLKYQSKVSVGTKVVVNIPQIGR" + gene complement(2348922..2349968) + /locus_tag="Ccel_1984" + CDS complement(2348922..2349968) + /locus_tag="Ccel_1984" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: periplasmic binding protein/LacI + transcriptional regulator; + KEGG: bja:blr1123 ABC transporter sugar-binding protein" + /codon_start=1 + /transl_table=11 + /product="periplasmic binding protein/LacI transcriptional + regulator" + /protein_id="ACL76332.1" + /db_xref="InterPro:IPR001761" + /translation="MDKFRFFNKTKLVYLILGLFIVLPGCGGSTAEKSQATEPSISYQ + ENSKVTENKDIIIAMVPKSLDNPVFLDALEQGERVGRELGIKVEWLGPMQSDTNIQIA + IVESLIRRKVDGIVISCIDPGKIKPVIDKAVRAGIKVATFDSDSPGSNRLFYCGTDNY + AAGIACGKALIKQAKGKQVLNLLIMTADKESNNLNERLNGFIETARAGGIQLNITGTL + YCNDDVNIAGDMLENHIRTGDTPDVFFSTGGWPFVTPPESLPGFHAWCKNGGISILVD + TYYPVLEAAKKGLADSLVGQNFNKMGEMSIRNLYKAIKGEKIPARFIDTGLELGSKSN + FAKLLKEKRRWEIK" + gene complement(2350118..2351290) + /locus_tag="Ccel_1985" + CDS complement(2350118..2351290) + /locus_tag="Ccel_1985" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: gka:GK1908 L-arabinose ABC transporter (permease)" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL76333.1" + /db_xref="InterPro:IPR001851" + /translation="METVKSIFKNNIRQYAMLIALVVIMAFFQIATKGVLLLPMNVSN + LILQNSYVLILAVGMTLCILTGGNIDLSVGSVCAFIGGIMGIFVINMKMNVGLAVLLC + LLVGGIIGIWQGFWIAYVRIPAFIVTLAGMLIFRGLTITMLEGLTLSPFPDSFTNLSA + GYIPDLFGGFGTKLNILTLFIGVIISIIYIYLEVKKRAERKKYDFEVTPGYLFIIQLV + LVLAAINVLSYWLAVYKGIPIILALIGILILAYSIFTIKTVPGRYLYAMGGNEKAAKL + SGINTNKVLFFSYVNMAVLAALAGITFTSRLNAASPQAGVNFELDAIAACFIGGASAY + GGIGTVVGGVIGALVMGVLNNGMSILGIGSDMQMTIKGLVLLVAVAFDVLSKSKSK" + gene complement(2351290..2352825) + /locus_tag="Ccel_1986" + CDS complement(2351290..2352825) + /locus_tag="Ccel_1986" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: gka:GK1909 ABC transporter ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76334.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MAEFILEMRNITKLFPGVRALDNVNFKVRKGEIHALVGENGAGK + STLMNVLSGIYSHGTYAGDIIFNGQECVFNNIKDSEKMGIGIIHQELALEPYLSIGEN + IFLRNERAKYGFINWNKTHIQATELLKKVRLKEDPYTFISEISVGKQQLVEIAKALAK + DVKLLILDEPTAALNEDDSANLLKLILELKAEGITSIIISHKLNEVLEVADSITVLRD + GATIETIKKDEDLTEDRIIKGMVGRQLVDRFPKRTPQIGEISFEVKNWNVYDPSIEGK + KVIKNVNLNVRKGEIVGIAGLMGSGRTELAMSVFGKAYGKNIRGEIIKDGKKIELHNI + KQAIGNGLAYVTEDRKSAGLILIQDIKNNISLAGIQKLKRNMLVDENQEIQIAEDFRK + KMNIKSPSILQKAGNLSGGNQQKVVLSKWIYTEPDVLILDEPTRGIDVGAKYEIYTII + NRLVNEGKSVILISSELPEILGMSDRVYVMNEGRIVGELDRNQASQESIMKCIMQSNR + EVV" + gene complement(2352953..2354089) + /locus_tag="Ccel_1987" + CDS complement(2352953..2354089) + /locus_tag="Ccel_1987" + /inference="similar to AA sequence:KEGG:Amet_3799" + /note="KEGG: amt:Amet_3799 putative solute-binding + component of ABC transporter" + /codon_start=1 + /transl_table=11 + /product="putative solute-binding component of ABC + transporter" + /protein_id="ACL76335.1" + /translation="MKKVIALILVAVLAVGMLAACGTSTSTDASVSSSAASTDSAKGT + DTAASGQLIGVAMPTQSLQRWNQDGANLKKELEGKGYKVDLQYANNDVNTQIQQIENM + IVKGSKVLVIAAIDCSALSDVLKKAADNSVKVISYDRLIMKTPNVDYYATFDNFKVGV + IQGQYIETKLGLKDGKGPFNIELFGGSPDDNNANYFFDGAYSILKPYIDSGKLVVTSG + QKDFAKIAIQGWDSAKAQARMDNLITANYAGGKKLDAVLSPNDSLAIGIVASLKNAGY + GSSDKPYPIITGQDCDKPNVIAMINGQQSMSIFKDTRTLASKVVEMIDSLLQGKEAPV + YDTKTYDNESKVVPSFLCEPVYADKDNYKKILVDSGYYKESDLK" + gene complement(2354358..2355695) + /locus_tag="Ccel_1988" + CDS complement(2354358..2355695) + /locus_tag="Ccel_1988" + /inference="protein motif:PFAM:PF00535" + /note="PFAM: glycosyl transferase family 2; chitin + synthase; + KEGG: cpo:COPRO5265_0045 chitin synthase" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 2" + /protein_id="ACL76336.1" + /db_xref="InterPro:IPR001173" + /db_xref="InterPro:IPR004835" + /translation="MKQTTTTKLKTKKKIYIPVKNKFIISMIAGIAWMATSIYFSVPW + IKDLSLYVTMPIAILIIAGIAYIPGYMNAFMVSSLLLDRQPKVKNTSPKVPVTILIAC + YNEEKSIENTVNYVATQDYEGEIRLIVIDNNSKDKTAETAKKAGEKMNLNLTVVHESK + AGKNFALNTALAHVETEYVLTLDADTLLHKSALRHIVARLESSPDDVCAVAGTVLVRN + SRGNILARIQEWDYFLGIASIKRLQGLFQSTLVAQGAFSLYKTELIRKVGGWPDAIGE + DIVLTWSFLSNNCRVYFEPMAVAFTDVPTSLKHFFRQRSRWARGMVEALKLFKPWSQP + IYSARYLTGCNLFMPFMDFVYTFCWLPGLVLAFFGHFWIVGPATLFVIPLALLQNFVL + YTYQKGVFKSLNLRVRKNIIGFILYVLCYQLLMSPISVWGYIQETLKLRRIWK" + gene complement(2355881..2356513) + /locus_tag="Ccel_1989" + CDS complement(2355881..2356513) + /locus_tag="Ccel_1989" + /inference="protein motif:TFAM:TIGR00693" + /note="TIGRFAM: thiamine-phosphate pyrophosphorylase; + PFAM: thiamine monophosphate synthase; + KEGG: cbe:Cbei_4487 thiamine-phosphate pyrophosphorylase" + /codon_start=1 + /transl_table=11 + /product="thiamine-phosphate pyrophosphorylase" + /protein_id="ACL76337.1" + /db_xref="InterPro:IPR003733" + /translation="MKSKIDYTLYLVTDHQLMSTKTLEEAVEQAIAGGCTLVQLREKT + ASSRDFYQNAINVKTITDKYNVPLIINDRIDIALAVGADGVHVGQSDLPAAVVRKIIG + NDKILGVSAGSVEKAIEAQKIGADYIGVGALFSTSTKTDAKAVSIETLMKIVREVSIP + VVGIGGINAENAVQLKNTGIRGIAVVSAIISQKDIKSSAEKLLEIFVNKA" + gene complement(2356503..2357324) + /locus_tag="Ccel_1990" + CDS complement(2356503..2357324) + /locus_tag="Ccel_1990" + /inference="protein motif:PFAM:PF02110" + /note="PFAM: hydroxyethylthiazole kinase; + KEGG: cbe:Cbei_4488 hydroxyethylthiazole kinase" + /codon_start=1 + /transl_table=11 + /product="hydroxyethylthiazole kinase" + /protein_id="ACL76338.1" + /db_xref="InterPro:IPR000417" + /translation="MSEYTKQITRLISEVRSKKPLIHNITNYVTVNDCANVTLAIGAS + PIMADDIDEAADITSISSALVINIGTLNKRTIESMILSGKKANEKGIPVIFDPVGAGA + SALRNETTSTILDKIKISVLRGNLSEISYIAGRNASTKGVDASEADIQSNDSIAVAKA + AAVKLGCVVAVTGAVDVISDGKNVVTVLNGHKMLSNVTGTGCMTTALVGSFCGAVKDY + FKAAVAGVTVMGISGEIAYEAAGHKGTGSYHIAIIDAISRMDENIFGEKARINEI" + gene complement(2357340..2358650) + /locus_tag="Ccel_1991" + CDS complement(2357340..2358650) + /locus_tag="Ccel_1991" + /inference="protein motif:PFAM:PF01964" + /note="PFAM: thiamine biosynthesis protein ThiC; + KEGG: cbe:Cbei_4489 thiamine biosynthesis protein ThiC" + /codon_start=1 + /transl_table=11 + /product="thiamine biosynthesis protein ThiC" + /protein_id="ACL76339.1" + /db_xref="InterPro:IPR002817" + /translation="MNYKTQMDAAKKGIITNEMKIVSRKESMDENKLRELVAEGRIAI + PANINHKSLSPEGIGEGLRTKINVNLGISGDCPDYTKEMEKADMSIKFGVEAIMDLSN + YGKTNTFRKELIKRSPAMIGTVPMYDAIGYLEKDLMDIKASDFLKVVEAHAAEGVDFM + TIHAGINKRAVECFKRSKRLTNIVSRGGSLLFAWMEMTGNENPFFEYYDDFLGILREY + DVTISLGDALRPGSINDSSDAGQLSELIELGDLTKRAWEKDVQVMVEGPGHMAMNEIA + ANMTIQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAANGADFLCYVTPAEHL + RLPDLSDVKEGIVASKIAAHAADIAKGIPNAREIDNKMSDARRRIDWEEMFSYAIDED + KARAYFESTPPTDRHTCSMCGKMCAMRTTNKILAGEKVEFVTEK" + gene complement(2358647..2359459) + /locus_tag="Ccel_1992" + CDS complement(2358647..2359459) + /locus_tag="Ccel_1992" + /inference="protein motif:TFAM:TIGR00097" + /note="TIGRFAM: phosphomethylpyrimidine kinase; + PFAM: Phosphomethylpyrimidine kinase type-1; + KEGG: cbf:CLI_0857 phosphomethylpyrimidine kinase" + /codon_start=1 + /transl_table=11 + /product="phosphomethylpyrimidine kinase" + /protein_id="ACL76340.1" + /db_xref="InterPro:IPR004399" + /db_xref="InterPro:IPR013749" + /translation="MKKVLTIAGSDCSGGAGIQADLKTFAAHGIYGMSVIVSVVAENT + YRVIDIQDITPDMIKKQIDAVFEDITPDAVKIGMLSDKECMEAVAEKLEQYKPVNVVI + DPVMIAKGGHALMKEEALEFFIKRLIPLAGMLTPNIPEAEAITGMRITDHNDMQKAAR + SIYEMGAGSVLVKGGHLYGDAEDILFDGREFYIYSTKRIQTKNTHGTGCTFSSAIASN + LALGIPFTTAVEKAKEYVTMAIEHSLEIGKGHGPTHHFYGVYKNGLDNRRLL" + gene complement(2359702..2359845) + /locus_tag="Ccel_1993" + CDS complement(2359702..2359845) + /locus_tag="Ccel_1993" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76341.1" + /translation="MVEKVKPDPWNLSVNTGVGKQKLSEIFDKILINAAHLTKVGVFC + FSQ" + gene complement(2359907..2360884) + /locus_tag="Ccel_1994" + CDS complement(2359907..2360884) + /locus_tag="Ccel_1994" + /inference="similar to AA sequence:KEGG:Clos_0174" + /note="KEGG: aoe:Clos_0174 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76342.1" + /translation="MYLINRIFNPEIYQGRYRHTDYFEGWYFKIIDKYAKNIYAVIPG + VSKAKNDKHAFIQVIEAVSGKTLYKRFSVKEFSYSTKVFDISINDNHFNRNGFSINIQ + DGDFTLNGEIGYTDVVPFPKTIFNPGIMGPFSFIPFMECYHGIVNIHCGIEGFLNINN + RDTDFTAGYGYIEKDWGTSFPKSWIWLQCNHFKSENTCLMFSIASIPWLSSSFDGLIS + FLKLGDRFFRFATYTGAKVKKLSYVNNVLEIVVEDSKNRLSLKASVGRGGVLKAPKNG + MMNIDIQESITSQVDVILSDKSGKIIFSDTGNNTGIELAGEFRQFETVN" + gene complement(2360944..2361384) + /locus_tag="Ccel_1995" + CDS complement(2360944..2361384) + /locus_tag="Ccel_1995" + /inference="protein motif:PFAM:PF01475" + /note="PFAM: ferric-uptake regulator; + KEGG: cpf:CPF_2029 FUR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="ferric uptake regulator, Fur family" + /protein_id="ACL76343.1" + /db_xref="InterPro:IPR002481" + /translation="MNTGDNGFLKEKLRECGYKFTGQRAAILDTLVQCSGQHVSTEEL + FNLVKAKHPEIGLATVYRTMILLDKLNLVHKLDFDDGFSRYELVKPNEDHRHHHLICN + TCGCVSEVEEDLLDNLEEEILRKNGFLVKDHRVQFYGLCKKCRE" + gene complement(2361398..2361556) + /locus_tag="Ccel_1996" + CDS complement(2361398..2361556) + /locus_tag="Ccel_1996" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76344.1" + /translation="MLVKCSLCKYQFEYDANKKSNTKCPRCGKIFIEKRGCENCKGCS + LWKTCKNS" + gene complement(2361574..2363397) + /locus_tag="Ccel_1997" + CDS complement(2361574..2363397) + /locus_tag="Ccel_1997" + /inference="protein motif:TFAM:TIGR00231" + /note="TIGRFAM: small GTP-binding protein; + PFAM: GTP-binding protein HSR1-related; Ferrous iron + transport protein B domain protein; Ferrous iron transport + B domain protein; nucleoside recognition domain protein; + KEGG: mta:Moth_1182 small GTP-binding protein + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="small GTP-binding protein" + /protein_id="ACL76345.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR011619" + /db_xref="InterPro:IPR011640" + /db_xref="InterPro:IPR011642" + /translation="MENTTNKKNLKHLVLVGNPNVGKSLFFNALTGMYVDVSNFPGTT + VDISTGRYGDYVVEDTPGIYGVSSFNDEERVARDVIINGDLVLNVIDAVHMQRDIFLT + QQLIDMGKKVIVAVNLIDEAKKNGIKVDTAELSRQLGVEVVATSALKGIGVDEIKQKI + ANARVGIKTEGVQELINTYDLNEISEAEALMLLEDDEVLSQRKGLPTAGKREEIYKSR + RQRVDKITESVLSDSYSGTSLGTTIGRLLLKPITGIPMLLLIMAGMFWFIGVFIAQTV + VDFTEGTVMEGFYKPFIESLLSFIPKNSFIGSLLIGDYGLLTMTVIYILGLLLPLTIG + FYMLMSILEDSGFLPRIAVLSDKALSKVGLNGRAIIPLILGFGCITMATMTTRLLGSR + RERVIATFLLGLTIPCSAQFGVIIGLLTPLGMKYILAYTALLIFIFGISGVLMNKILP + GESTQLFIDLPQIRMPQFKNVMKKTYVKAKAFLIEATPIFAFGAVLITVLQYTGLLGK + IENAISPLTVQWLKLPEQASVVFIMGIIRRDFGAAGLSRMVLTNPQMLVALITITLFV + PCVASIIMIFKERSKLEATAIWLGSFVIAFLIGGILAQVIV" + gene complement(2363432..2363653) + /locus_tag="Ccel_1998" + CDS complement(2363432..2363653) + /locus_tag="Ccel_1998" + /inference="protein motif:PFAM:PF04023" + /note="PFAM: FeoA family protein; + KEGG: hmo:HM1_2506 ferrous iron uptake protein FeoA" + /codon_start=1 + /transl_table=11 + /product="FeoA family protein" + /protein_id="ACL76346.1" + /db_xref="InterPro:IPR007167" + /translation="MTLDKVNRGDTIEIVSIEDKDIRTQAIRLCIYEGSKLKCSEKLP + AGPIILQNRLQEVAISRKLAEHIVIEKVS" + gene complement(2363771..2363956) + /locus_tag="Ccel_1999" + CDS complement(2363771..2363956) + /locus_tag="Ccel_1999" + /inference="similar to AA sequence:KEGG:Aflv_2769" + /note="KEGG: afl:Aflv_2769 uncharacterized protein + contains CXXC motif" + /codon_start=1 + /transl_table=11 + /product="uncharacterized protein contains CXXC motif" + /protein_id="ACL76347.1" + /translation="MEQERVNCLKCKHYFITYDARMPYGCKLFGFKGRQMPSVSVRQS + SGNECEGYTVKNKQKKT" + gene 2364301..2364525 + /locus_tag="Ccel_2000" + CDS 2364301..2364525 + /locus_tag="Ccel_2000" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76348.1" + /translation="MYSRKEKYYDGQGILRNPGDSFFDKEGILRDPGEDYFDFFSVLR + KADENFYDSQGVLRNCDESFYDGAGNMCER" + gene complement(2364565..2365497) + /locus_tag="Ccel_2001" + CDS complement(2364565..2365497) + /locus_tag="Ccel_2001" + /inference="protein motif:PFAM:PF01544" + /note="PFAM: Mg2 transporter protein CorA family protein; + KEGG: mba:Mbar_A0156 transporter" + /codon_start=1 + /transl_table=11 + /product="Mg2 transporter protein CorA family protein" + /protein_id="ACL76349.1" + /db_xref="InterPro:IPR002523" + /translation="MIEIFKTVNNEILRTDTFEDGVWVNLINPTEEEIVEVNSTLGVE + MDFLKAALDEEERARIESDNGQTLIIVDVPIVEKEGNLNVYTTIPLGIILIKHIIITV + CLKEDTILNDFANNRVKSFLTQFKTRFVLQILYRNATRYLQYLKHIDKTSSRVEQEVY + KSMKNKELIQMLKLEKSLVYFSTALKSNEVVLEKLMKFEYIKNYPDDQELLEDVIIEN + KQAIEMANIYSSILSGTMDAFASVISNNLNIVMKFLTSVTIVMAIPTMISSFFGMNVN + LPLKEGGHSFWFIVVISVVMCTVTGYTLYKKKLF" + gene 2365795..2365875 + /locus_tag="Ccel_2002" + /pseudo + gene complement(2365966..2366433) + /locus_tag="Ccel_2003" + CDS complement(2365966..2366433) + /locus_tag="Ccel_2003" + /inference="protein motif:TFAM:TIGR00114" + /note="TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; + PFAM: 67-dimethyl-8-ribityllumazine synthase; + KEGG: cth:Cthe_0107 riboflavin synthase subunit beta" + /codon_start=1 + /transl_table=11 + /product="6,7-dimethyl-8-ribityllumazine synthase" + /protein_id="ACL76350.1" + /db_xref="InterPro:IPR002180" + /translation="MSIKTNEGNLIASGLKFGIVVGRFNEFISSKLLSGAIDGLVRHG + ADESDITVSWVPGAFEIPIAAQKMANSGKYAAVICVGAVIRGSTPHFDYVAGEVSKGV + ARISLDTGVPVIFGVLTTDTIEQAIERAGTKAGNKGYDAAVTAIEMANLLNQL" + gene complement(2366423..2367685) + /locus_tag="Ccel_2004" + CDS complement(2366423..2367685) + /locus_tag="Ccel_2004" + /inference="protein motif:TFAM:TIGR00506" + /note="TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate + synthase; + PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP + cyclohydrolase II; + KEGG: cth:Cthe_0106 GTP cyclohydrolase II" + /codon_start=1 + /transl_table=11 + /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" + /protein_id="ACL76351.1" + /db_xref="InterPro:IPR000422" + /db_xref="InterPro:IPR000926" + /translation="MNFSSIEEAIEDIRQGKIIIVVDDEDRENEGDLLMAAEKATPES + INFMATYGKGMICVPLTSARAGELELFPMVSHNEDRHGTAFTVTVDHRDSTTGISAFE + RAHTIVELTNKKAHPGDFKRPGHVFPLTARDGGVLKRTGHTEAAVDLARMAGLYPAGV + ICEIMNDDGRMARVPQLMEFSQKHGLKIITVAGLIEYRRKNEKLIKRAAEAKMPTAYG + EFKIIGYENTTNGEHHVALVKGDVAGSTDPVLVRVHSECLTGDAFHSQRCDCGEQLEA + ALSRINNEGKGVLLYMRQEGRGIGLINKIRAYELQDQGMDTVEANIKLGFPADLREYG + IGAQILYDLGIKKIKLLTNNPKKLVGLNGYGLEVVGRESIQIKENEKNEFYLRTKKEK + MGHLFDGLNNKTSEKNTTAHQEENKNVD" + gene complement(2367713..2368369) + /locus_tag="Ccel_2005" + CDS complement(2367713..2368369) + /locus_tag="Ccel_2005" + /inference="protein motif:TFAM:TIGR00187" + /note="TIGRFAM: riboflavin synthase, alpha subunit; + PFAM: Lumazine-binding protein; + KEGG: cth:Cthe_0105 riboflavin synthase subunit alpha" + /codon_start=1 + /transl_table=11 + /product="riboflavin synthase, alpha subunit" + /protein_id="ACL76352.1" + /db_xref="InterPro:IPR001783" + /translation="MFTGIVEEMGSVKNIVYGSSSIKLSIECTTVIEGTVKGDSIAVN + GICLTVTELGASWFTADVMPETMRKTGLEKLKPGGKVNLERALRLADRLGGHIVSGHI + DGTGTITGLRKEDNAVLITITAPEHIMKYIVQKGSVALDGTSLTIAELASNTFTVSLI + PLTRGFTILGTKSIGDRVNIECDIIGKYVEKMLKGETLETKPSKKDLSAEFLKEHGFM + " + gene complement(2368390..2369493) + /locus_tag="Ccel_2006" + CDS complement(2368390..2369493) + /locus_tag="Ccel_2006" + /inference="protein motif:TFAM:TIGR00326" + /note="TIGRFAM: riboflavin biosynthesis protein RibD; + PFAM: CMP/dCMP deaminase zinc-binding; bifunctional + deaminase-reductase domain protein; + KEGG: cth:Cthe_0104 + 5-amino-6-(5-phosphoribosylamino)uracil reductase / + diaminohydroxyphosphoribosylaminopyrimidine deaminase" + /codon_start=1 + /transl_table=11 + /product="riboflavin biosynthesis protein RibD" + /protein_id="ACL76353.1" + /db_xref="InterPro:IPR002125" + /db_xref="InterPro:IPR002734" + /db_xref="InterPro:IPR004794" + /db_xref="InterPro:IPR011549" + /translation="MNIHEFYMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFH + EALGCAHAEVCAFSNAPTDISGATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMV + DPNPKVSGKGIQMLKDANINVIVGVLEEEAKKLNEIFIHYITKRLPFVIMKTAMTLDG + KIASVTGDSKWISGEYSREYVHAIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPV + RIVVDSSGRIPIESRVIQSDSEAGLILATTEKIHKDKETQLLSRGVRIIKTAPKNGKV + NLRELMEELYKLEIDSVLLEGGGTLNFSALEAGIVNKVMTFISPKIIGGSSAVTPVGG + KGIEKMKDAIALSDIRVERFDRDVLIEGYVADK" + gene 2369950..2371191 + /locus_tag="Ccel_2007" + CDS 2369950..2371191 + /locus_tag="Ccel_2007" + /inference="protein motif:PFAM:PF00817" + /note="PFAM: UMUC domain protein DNA-repair protein; + KEGG: cth:Cthe_2083 DNA-directed DNA polymerase" + /codon_start=1 + /transl_table=11 + /product="UMUC domain protein DNA-repair protein" + /protein_id="ACL76354.1" + /db_xref="InterPro:IPR001126" + /translation="MDRVILHCDLNNFYASVECLYNPQFRDYPLAVCGSQDLRHGIVL + AKNYIAKKFGIKTGEAIWQAKQKCPNLVVVNPNYALYLRFSKDAREIYSRYSNLVESF + GIDECWIDVSESTKLFGDGEKIANEIRALIKTELGVTASVGVSFNKIFAKLGSDLQKS + NATTVINQNNFKEMVWNLNVGELLYVGRSTRKKLNQIGIMTIGDLAGLPPSFIRRYLG + KWGEILWNFANGMDYSEVTATDYHETIKGIGNSMTTARDLVNTEDVKLTFTVLAESVA + ERLRKHNLKGSTIQIYIRDNELASIERQAKLPVSSYISGEITRKAMNIFNTNWSWYKP + IRSLGIRATDLVTADSHTQLSFFDNYNKRPQLENLEFSIDAIRKRFGHYSVQRAILLK + DSALNANPIEDNIIHPVSFFR" + gene 2371202..2371435 + /locus_tag="Ccel_2008" + CDS 2371202..2371435 + /locus_tag="Ccel_2008" + /inference="similar to AA sequence:KEGG:Csac_0616" + /note="KEGG: csc:Csac_0616 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76355.1" + /translation="MKKVFVELNATFSPNGELTPVSFIWEDGVKYIIDKVYDHRKAAS + LKVGGQGIRYRCKVMGKEVFIFFEEGRWFVEGK" + gene complement(2371484..2371837) + /locus_tag="Ccel_2009" + /pseudo + gene 2371904..2372188 + /locus_tag="Ccel_2010" + CDS 2371904..2372188 + /locus_tag="Ccel_2010" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76356.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene 2372236..2373048 + /locus_tag="Ccel_2011" + CDS 2372236..2373048 + /locus_tag="Ccel_2011" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76357.1" + /db_xref="InterPro:IPR001584" + /translation="MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRET + YGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTRKKFKATTNSNHNYPVADNILNQ + DFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ + AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRAEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(2373103..2374347) + /locus_tag="Ccel_2012" + CDS complement(2373103..2374347) + /locus_tag="Ccel_2012" + /inference="protein motif:SMART:SM00710" + /note="SMART: Parallel beta-helix repeat; + KEGG: dol:Dole_0363 parallel beta-helix repeat-containing + protein" + /codon_start=1 + /transl_table=11 + /product="Parallel beta-helix repeat protein" + /protein_id="ACL76358.1" + /db_xref="InterPro:IPR006626" + /translation="MSKLNKLFFSILIVLMAIGLIPVNSQKNIVYAETYNSTDTSVEA + DTIHVSGIISENTTWTNNYTYVVDGTIIVQQGVKLQIDQGVMVKFTRGTEIVVNGTLT + ASGTELDKVVFTSNNDTAYGGSEVTGYYDYWLGITVSSTGEFNGDYIKVRYAGADSNY + YTPHCAINVQGKLNLTNSEVSNSKNYGIYLNTSFDSAIKNNNIISNRSTGIYINNTSA + DATNTMDIENNTISGNGGCGIYVSQAGTGNAVIEGNRIAGNGGSGIYIDIFGTGNLSV + RNNNLLNNTESGIYVYLGGLSSSIFTGIADNTYEGNTIRGTLCNGVGIGGNTIVDITL + SNAVYYLADFVLVPNDKKLTVQPGTIIKSSSKGSSIYVYGKLNALGTKGSPIVFTSHK + DAAYGGSGIAGYYDYCDLSLIN" + gene 2374548..2375168 + /locus_tag="Ccel_2013" + CDS 2374548..2375168 + /locus_tag="Ccel_2013" + /inference="protein motif:PFAM:PF02586" + /note="PFAM: protein of unknown function DUF159; + KEGG: csc:Csac_0196 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF159" + /protein_id="ACL76359.1" + /db_xref="InterPro:IPR003738" + /translation="MCGRYAIFTEEENQELRNIVNGINEKLKEKAATMKTGEIFPTDT + VPVITDISSDGKKTADLFKWGFPNFKQSSGVIINARSETVHEKPTFKKLLQSSRCIIP + ASGFYEWRKADGKKEKYFIRSSTGNVIYMAGLYNRFIDNTGAVNNRFVILTTDSSEQM + SYIHSRMPVILRPEDALIWFDSKCNCLKFTELFKPYGGNILLKKIG" + gene complement(2375275..2376219) + /locus_tag="Ccel_2014" + CDS complement(2375275..2376219) + /locus_tag="Ccel_2014" + /inference="similar to AA sequence:KEGG:Cphy_2209" + /note="KEGG: cpy:Cphy_2209 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76360.1" + /translation="MKKLTLQDYKEIKAWMYRNSRPIELAIWQYYFENGSKEAVLSAL + EFYQNDDGGFGNALEADSWNPNSSPYTTLRAINILKEIGFNDKQHPIIRGIFKFLGSN + AYFSENGWYFNIPSNDDYAHAPWWTYNMEANAFEGIGLTAEIAGFIFLNADKDSEIFS + KALRISDVIVGKLNTVDEHGEMGVKGYCVLLDALEKIGLTVQDHKSLTEKVKKLVYNS + IERDTSKWIYYTKRPSDYINSSESVFYKDNQDIIAKELDYLIDTRPQNSVWNITWSWF + ENNERFAKEFAISENWWKASVAIDKLIFLKNFCRLDEF" + gene complement(2376250..2376636) + /locus_tag="Ccel_2015" + CDS complement(2376250..2376636) + /locus_tag="Ccel_2015" + /inference="similar to AA sequence:KEGG:Cphy_3137" + /note="KEGG: cpy:Cphy_3137 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76361.1" + /translation="MFRTILQIYVKGSDEAFDLYKRAFDANIGFQDVDENGTVIHREL + DVCGQAIAVGEAHDTTRAGGDRRLTGNTMQFCIQFGAGQEKRLHKAYETLLDGSEIIT + PFGELFFSPCGVELIDKYGVWWCLFI" + gene complement(2376745..2377584) + /locus_tag="Ccel_2016" + CDS complement(2376745..2377584) + /locus_tag="Ccel_2016" + /inference="protein motif:SMART:SM00342" + /note="SMART: helix-turn-helix- domain containing protein + AraC type; + KEGG: lmo:lmo2672 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL76362.1" + /db_xref="InterPro:IPR000005" + /translation="MFKLNNIYRPITAQPFLNDESYTEIQPCEALKPYICCFWGTQKP + YSSFTSTEIKDKLVIPDTCMDIVFNTNMDKNELDGFFAGVSDTTFIDKTKNVTSSTSC + FAIRFYCWAVPLFSDESMKNVLNSFVVVEDYFKNFKRDLYDILISNQLFLNRVDKVQQ + YLINKINLDKQNANIMNSVYKILKSKGTVNISELAGFTAVSQRQLERLFLEYVGVSPK + KLSGLVRYQYLWQDILYNTNLNIHDSVCKYGYTDQSHLLKDFKKYHTLSTVDARIFAY + KTR" + gene complement(2377760..2378671) + /locus_tag="Ccel_2017" + CDS complement(2377760..2378671) + /locus_tag="Ccel_2017" + /inference="protein motif:PFAM:PF00657" + /note="PFAM: lipolytic protein G-D-S-L family; cellulosome + protein dockerin type I; + KEGG: scl:sce3301 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="lipolytic protein G-D-S-L family" + /protein_id="ACL76363.1" + /db_xref="InterPro:IPR001087" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKLLLFSIIMAVMAASFTPATIFAATTQIKGSDVMIIGDSYFA + MSGEITRALENEARNAGVLGANDRFRDYTVSGSTLANNGIPSQYRNGINSGKVKYVIM + DGGGNDCLQGYSAPPYTASTPFIKNATDAVTDLLKQMKADGVVKVFYLFYPDPNGDLN + GLKSKLDALRPIMQSTVANAAQKPETYFFDIRPTWSGNLSQYTLPDGIHPTTAGSVAT + AKAMWAEMQKVNFFGTSTPTIKYGDYNNDGSIDALDFSSFKMYLMNPVRTYTEVLDLN + SDNTVDAIDFAIMKQYLLGIVKNLPYK" + gene complement(2378987..2379073) + /locus_tag="Ccel_R0051" + /note="tRNA-Leu4" + tRNA complement(2378987..2379073) + /locus_tag="Ccel_R0051" + /product="tRNA-Leu" + gene complement(2379161..2379691) + /locus_tag="Ccel_2018" + CDS complement(2379161..2379691) + /locus_tag="Ccel_2018" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0501 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76364.1" + /translation="MRKVHEKSILLGIGIGMIITAIAGLIYSAGTQKELTKDEIISRA + KSYGLIEPVKILNENNSAADSTVAVTTPEKSTPAVSTSSQASTEENKKTDTAKPSKTG + TVTNERNIAIKIERGNTAVDVMKQLLNKGVITSEKDFSDMVYSYRASRKIVSGTYMFK + KNEDLAYIVKKICGFK" + gene complement(2379737..2380375) + /locus_tag="Ccel_2019" + CDS complement(2379737..2380375) + /locus_tag="Ccel_2019" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0500 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76365.1" + /translation="MEAFYVTIIFMGVILVGVSLFLIIMDRVNGKDFFKEFDRKKDEM + FNLIQDSEEMIHELNRMSDYVVTVISEKNQDFFNKFKDIDSKDTVKGESVNISHKEKQ + TQIEEPIISDPLLATEVDKLNQQINHDIQKHTNIQSYKNIQSGNNQQSDTTRQTIEAK + DNDDKASKLVLNSRRKQVLELIERGLSNDEIAEKMKIGKGEIGLIRGLSSSK" + gene complement(2380406..2380687) + /locus_tag="Ccel_2020" + CDS complement(2380406..2380687) + /locus_tag="Ccel_2020" + /inference="similar to AA sequence:KEGG:Cthe_0499" + /note="KEGG: cth:Cthe_0499 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76366.1" + /translation="MSIKPIDFQMVLPKTTEVSKIYNDDVNKNQAIQQQQQTASQTKI + DNKLKQVVNRENVQNGRVMEKQEKGNSRQNEKKKKRQDKEDRPTIDIRV" + gene complement(2380780..2382171) + /locus_tag="Ccel_2021" + CDS complement(2380780..2382171) + /locus_tag="Ccel_2021" + /inference="protein motif:PFAM:PF03961" + /note="PFAM: protein of unknown function DUF342; + KEGG: cth:Cthe_0498 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF342" + /protein_id="ACL76367.1" + /db_xref="InterPro:IPR005646" + /translation="MVEQKDLKVLVTVSPDELKAFITLYNTGDNSTIKKEDIMLALES + QRVVFGIKEDIINYLVESPMYNESFCVAEGIAPKNGKNGSVTYHFNTSVNKTPTLMED + GRINYRELNLIQSVKKGQILCSLVPPVVGVEGKNVKGRVISAINGKPAVLPRGKNVAL + SEDGKSLIATTAGEVEYLDATKVSVYTNHEVPADVDNSTGNVSFVGSVIIKGNVLSGF + SVEAGGNVEVFGVVEGATIKAGGNIILRRGMQGMGKGKLIAGGDIVARYIEYSSVDAN + NNIQAEAIMHSNVKCGNKLELTGNKGLFVGGSCKVGKIVVAKVIGSHMATITDVEVGA + DPSVRERYKNAKEELISMESDIKKADQAITILRKMESAGALTPDKQEILTKSVRTKVY + LSSKIEEVKQEAAILDEKLQQEGNGKVRALNCIYPGVKVSIGTCMMYVKEPLQYCTLY + RDGADVRVGPIDK" + gene complement(2382182..2382946) + /locus_tag="Ccel_2022" + CDS complement(2382182..2382946) + /locus_tag="Ccel_2022" + /inference="protein motif:TFAM:TIGR02479" + /note="TIGRFAM: RNA polymerase sigma factor, FliA/WhiG + family; RNA polymerase sigma factor, sigma-70 family; + PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 + domain protein; sigma-70 region 4 domain protein; Sigma-70 + region 4 type 2; + KEGG: cth:Cthe_0495 RNA polymerase, sigma 28 subunit" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, FliA/WhiG" + /protein_id="ACL76368.1" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007624" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR012845" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MFSESINHLWKQYIETKDAAAKEKLIIQYAYLIKYVAGRLSIYF + GSNVEFDDLVGYGAFGLIDAIEKYDLAKGVKFETYASLRIRGSIIDSIRDMDWVPRSL + RQKNKELEKVYVEIENEKGHTATDKEVAEKMGLSMSDFYKLLNDVNVSSMMSLDEFME + QNYERGLEIFSESTEDKPEASLEFNEMKQLLADCIDKLPEKEKAVITFYYFEELTLKE + ISAIMNVTESRISQLHTKALLRMKGKLFRHRIMLES" + gene complement(2382989..2383363) + /locus_tag="Ccel_2023" + CDS complement(2382989..2383363) + /locus_tag="Ccel_2023" + /inference="similar to AA sequence:KEGG:Cthe_0494" + /note="KEGG: cth:Cthe_0494 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76369.1" + /translation="METIMKIPFLFALIAAIITGLIGINNNISLNQNCIHMLIAIVIF + YFIGILLRTTINRIIEEQNKLKEQAEKEEQEKLRIEKEEAEKLAKEEHLGNNLDLVAD + SNLDDGFTPLDLSQAVRTRMKE" + gene complement(2383427..2383915) + /locus_tag="Ccel_2024" + CDS complement(2383427..2383915) + /locus_tag="Ccel_2024" + /inference="protein motif:PFAM:PF03975" + /note="stimulates methylation of MCP proteins; PFAM: CheD + family protein; + KEGG: cth:Cthe_0493 chemoreceptor glutamine deamidase + CheD" + /codon_start=1 + /transl_table=11 + /product="CheD" + /protein_id="ACL76370.1" + /db_xref="InterPro:IPR005659" + /translation="MDIEIIKVGMADLNSARHPCMITTLGLGSCVGVALFDSTSKIAG + LAHIMLPNSEQAKNKTNVAKFADTAIVKLVDDMIKLGARKDKIVAKLAGGAQMFVFSQ + SSDLMRIGYRNVVASKEKLKLLNIPIISEDTGGNHGRTIELYSDDGRLMIKTIGFGIK + QI" + gene complement(2383915..2384532) + /locus_tag="Ccel_2025" + CDS complement(2383915..2384532) + /locus_tag="Ccel_2025" + /inference="protein motif:PFAM:PF04509" + /note="PFAM: CheC domain protein; + KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation" + /codon_start=1 + /transl_table=11 + /product="CheC, inhibitor of MCP methylation" + /protein_id="ACL76371.1" + /db_xref="InterPro:IPR007597" + /translation="MSISFDEFSNIHMDVLREIGNIGAGNAVTSLAKMIDKKVDMAVP + EVKIMGFDRVSQMLGGEEILVVGILLNVTGDITGNMMFILDITAARKLVNILLGSNDE + NLEFNELELSALKEIGNILTASYLSALAGLTNLKILPSVPELAIDMAGAILSVPAIEF + GKVGDSVLYIETEFCEGITKVFGDFLLIPDVESYAILLRALGVIE" + gene complement(2384566..2385012) + /locus_tag="Ccel_2026" + CDS complement(2384566..2385012) + /locus_tag="Ccel_2026" + /inference="protein motif:PFAM:PF01584" + /note="PFAM: CheW domain protein; + KEGG: cth:Cthe_0491 CheW protein" + /codon_start=1 + /transl_table=11 + /product="CheW protein" + /protein_id="ACL76372.1" + /db_xref="InterPro:IPR002545" + /translation="MADLQFQEFETKQFIVFSLGEERFGIDSLKITTIDRMKTITRVP + KTPSYIKGVINLRGDIIPVMDLRLKFNLPVAEETDETRIIILKLEEVSIGVIVDQVLQ + TIQLGGEAIESAASLMNSTIADYILGIGKVDGEIVTLLNFEKLVKI" + gene complement(2385148..2387223) + /locus_tag="Ccel_2027" + CDS complement(2385148..2387223) + /locus_tag="Ccel_2027" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: CheW domain protein; ATP-binding region + ATPase domain protein; Signal transducing histidine kinase + homodimeric; Hpt domain protein; P2 response regulator + binding domain protein; + KEGG: cth:Cthe_0490 CheA signal transduction histidine + kinases" + /codon_start=1 + /transl_table=11 + /product="CheA signal transduction histidine kinase" + /protein_id="ACL76373.1" + /db_xref="InterPro:IPR002545" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004105" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008207" + /db_xref="InterPro:IPR010808" + /translation="MDMSQYLQIFIEEAKEHVQSLNECLLQIEKDPEGKDVLNEIFRV + AHTLKGMAGTMGYTKMTKLTHVMENVLHAIRNDEINITSDLVDVLFKCLDALENYVKS + VVNTGGEGDKDYKNVIDDLNQILNNKGTVKTPEKTRGTETPEQLVNDSKYITAQLQPD + EFEKNAVNKAIDMGINALKITLVLNSGCLLKSARAFILFQTLERYGEIIKSQPSVQDI + EDEKFDYEFTVIVVSKENEQLFNKELNSIAEVDEVVITTLQKFDTTESSTDADENKHV + SEAETIETVQKTSKQTVESQDAAKTNANNAPRKTQRTVRVDIDRLDVLMNLVGELIIT + KTRLEGTDIIEKPQEYHENLEYLERITTNLNDAVMKVRMVPVETVFNRFPRMIRDIAK + DLGKEIELKMSGEETELDRTVIDEIGDPLIHLLRNSCDHGLESTEKRKEIGKPEVGRI + NLTAYQSGNNVLIEVEDDGAGINIEKIKNKAVDNGIITREAANSMTQQDAIELLFRPS + FSTAEKITGLSGRGVGLDVVKTKIEQLGGTVEVETQKGKGSKFIIKLPLTLAIYQALL + VNVGGEKYAIPLGAIYQIYNWSAEDVKTVQGQEVILLRNMVVPITRLADALEVPNSDE + ANQKQLKIVIVRKGEKLTGLVVDSVIGQQEIVIKSLGKLLTGIKYLAGATILGDGNVA + LIIDVNSIT" + gene complement(2387225..2388295) + /locus_tag="Ccel_2028" + CDS complement(2387225..2388295) + /locus_tag="Ccel_2028" + /inference="protein motif:PFAM:PF01339" + /note="PFAM: CheB methylesterase; response regulator + receiver; + KEGG: cth:Cthe_0489 response regulator receiver modulated + CheB methylesterase" + /codon_start=1 + /transl_table=11 + /product="response regulator receiver modulated CheB + methylesterase" + /protein_id="ACL76374.1" + /db_xref="InterPro:IPR000673" + /db_xref="InterPro:IPR001789" + /translation="MSLNLKKNNPIKVLIVDDSAFMRKVLSDMLNSDKSISVVGTAVD + GRDALEKIHHLYPDVVTLDVDMPVMDGINCLKQIMQKIPKPVIMFGSETEYGTEMTIR + ALDEGAVDFVVKPKNIFDIKNESKRNEIIEKITIAKNIRLKSIQKKMIDNDKRVTARS + KKPVENIIAIGSSTGGPKALQTVIPYLPRDMSIAVLVVQHMPPGFTKSLAERLDSKSD + LIVKEATHREKVLEGYAYIAPGDSHMKVQSSANGDIIIHLDKSPPVGGHRPSVDVMMT + SLSETGFENIIGVILTGMGADGSAGIKKLKEVNKSFIIAQDEETSVVYGMPKMAVQTG + AVDKIVSLDKIPGEIIQYLGVR" + gene complement(2388471..2389376) + /locus_tag="Ccel_2029" + CDS complement(2388471..2389376) + /locus_tag="Ccel_2029" + /inference="protein motif:PFAM:PF01656" + /note="PFAM: Cobyrinic acid ac-diamide synthase; + KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase" + /codon_start=1 + /transl_table=11 + /product="Cobyrinic acid ac-diamide synthase" + /protein_id="ACL76375.1" + /db_xref="InterPro:IPR002586" + /translation="MIDQADKLRQLVNNHNKTEKPQQSQNLAEQNRAKVITVTSGKGG + VGKTNVTVNLAVALSQRGYRVVIIDADLGLSNIDVVFGIVPKYTMLDCIKNDKGLLDI + LCDGPGNIKFISGGSGVQELINLDKSSLELFMANMSLLDHIADYILIDTGAGLSDTVM + NFVMSADEVVLVVTPEPTSITDAYALVKTVSKVKKDCRINVLINRAESEQEAKNVYNN + FTMVSEKFLGIKLQSLGYLPFDQMLIKSVKLQKPYLLVYPKNNTSRLFFELADALIKN + DINQQKNTQSGIKGFLNRFVGLFTH" + gene complement(2389378..2390547) + /locus_tag="Ccel_2030" + CDS complement(2389378..2390547) + /locus_tag="Ccel_2030" + /inference="protein motif:PFAM:PF00448" + /note="PFAM: GTP-binding signal recognition particle SRP54 + G- domain; + SMART: AAA ATPase; + KEGG: cth:Cthe_0486 GTP-binding signal recognition + particle" + /codon_start=1 + /transl_table=11 + /product="GTP-binding signal recognition particle SRP54 G- + domain protein" + /protein_id="ACL76376.1" + /db_xref="InterPro:IPR000897" + /db_xref="InterPro:IPR003593" + /translation="MKIKRYMGKNTQEALLKVKMDLGNDAIILSTKKVRQKGLKKYFT + SPMMEVMAAIDDDSSKMPKKELTRHDNSLANDVTPKNMLSQKEEKITQLENKVTKIET + LLDRVLDIIEPENKGEDIEKSDGTGQLSQVFQLLYNNLLKNEVDQDIAHKIIEKVAEK + SDARNINDASVVMLSVISSLLGKAEPINFRQDGKPTVILFVGPTGVGKTTTLAKLAAS + FMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPISIAYSVEEISSQIEDYSDKDVV + LIDTAGCSYRDKQKFEELQKIIEVCQADEVFLVLSATVSSKNCRDIIKNYGFIQDYRL + IFTKLDETPVYGSILNTKCYSNKPLAYITNGQNVPDDIEMVNTEKISKNLLGSIT" + gene complement(2390593..2392617) + /locus_tag="Ccel_2031" + CDS complement(2390593..2392617) + /locus_tag="Ccel_2031" + /inference="protein motif:TFAM:TIGR01398" + /note="TIGRFAM: flagellar biosynthesis protein FlhA; + PFAM: type III secretion FHIPEP protein; + KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthesis protein FlhA" + /protein_id="ACL76377.1" + /db_xref="InterPro:IPR001712" + /db_xref="InterPro:IPR006301" + /translation="MAKLNGFFVPLIVVLAIINLILPIPTGVLDFLLAVNIILSAIIM + LNTIYLKSALDLSVFPTLIVVTTIFRLSLNVTATKLILANGEAGHVIRGFGQFVGRNN + LVVGFVIFFIIMIVNFLVITKGSERVAEVAARFTLDAMPGKQMAIDADLNTGLISDAE + AKERRKKIQREADFYGSMDGASKFVKNDAIAGIIITLINIIGGIIIGVVMLEKDIGDA + LQTYTILTIGDGLVSQLPALMLSTATSFIVTRAGADSDLNKDVLRQLFYNPKVLIIAA + CLSVGLAPFLTPAPFLILAAVLLFVAYKIRQLQEEADKDEVVQIQESEVEEIRKPENV + VSLLQVDPIELEFGYGIIPLADVNQGGDLLDRVVLIRRQLALELGMIVPVIRLRDNIQ + ISPNEYIIKIKGTQVAKGELLFDYFLAMNSGDVEEDLEGIKTIEPAFGLPAIWIQESQ + RDKAEMLGYTVVDPPSIIATHLTEVIKKHSYELLGRQEVQALVDNIKQSYPAIVDELV + PKLLSVGEIQKVLANLLKENVTIRDMVTIMETLADYAPATHDIDMLTEYVRQALGRSI + SQKFLNGNTNVITLDPKVEQMILDSIQKTEFGSYLALDPSVSNTIINSVSKNVQRLIQ + LGSQPIILASPVVRLYFKRLTENVIPGLVVLSYNEIDSGVEIQSVGTVSV" + gene complement(2392653..2393798) + /locus_tag="Ccel_2032" + CDS complement(2392653..2393798) + /locus_tag="Ccel_2032" + /inference="protein motif:TFAM:TIGR00328" + /note="TIGRFAM: flagellar biosynthetic protein FlhB; + PFAM: type III secretion exporter; + KEGG: cth:Cthe_0484 flagellar biosynthetic protein FlhB" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthetic protein FlhB" + /protein_id="ACL76378.1" + /db_xref="InterPro:IPR006135" + /db_xref="InterPro:IPR006136" + /translation="MTNRKINKIFEVNCGLELNYQRFASGGAGDKTEKATPKKKSDAR + KKGQVFQSREMTASLILIITIVAMRIFGGTIYSQLTQYIKKTFNEYLTVKDAIDFNIL + ANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTMETLKIKGDRINPLSGFKR + IFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTDLMNVLIFICDASFTVA + LRICMAMVILGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGSPEIKSKIKQKQRQMS + MKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKGQDYIALRIKQIASDNKV + QIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLKNGGKAG" + gene complement(2393831..2394628) + /locus_tag="Ccel_2033" + CDS complement(2393831..2394628) + /locus_tag="Ccel_2033" + /inference="protein motif:TFAM:TIGR01400" + /note="TIGRFAM: flagellar biosynthetic protein FliR; + PFAM: type III secretion system inner membrane R protein; + KEGG: cth:Cthe_0483 flagellar biosynthesis protein FliR" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthetic protein FliR" + /protein_id="ACL76379.1" + /db_xref="InterPro:IPR002010" + /db_xref="InterPro:IPR006303" + /translation="MQIPFGMLLNNVELFLLIFVRMTGLFVTAPIFGRRNIPVYYKVG + FAFITAILASSVIRVDHIINTDNFLIFALYILKEFLVGIIIGFVAYAVFTCIYLAGQI + IDMQIGFGMVNVFDPISNIQIPVTANLYFILSMIIFLLTNGHHMLIRALYESFQIIPL + GSAVIGPKLKDDVIGIMQGVFSMGFKIAAPIVAAIFITDVVLGIISKTIPQMNVFILG + MPLKIFVGILIILITIPAFVYIVTVITDDMNTQIFKFLKDMGNSLKT" + gene complement(2394646..2394915) + /locus_tag="Ccel_2034" + CDS complement(2394646..2394915) + /locus_tag="Ccel_2034" + /inference="protein motif:TFAM:TIGR01402" + /note="TIGRFAM: flagellar biosynthetic protein FliQ; + PFAM: export protein FliQ family 3; + KEGG: cth:Cthe_0482 flagellar biosynthetic protein FliQ" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthetic protein FliQ" + /protein_id="ACL76380.1" + /db_xref="InterPro:IPR002191" + /db_xref="InterPro:IPR006305" + /translation="MDESGIINIAQDALKVILYVSAPILLISMIVGLVISIFQATTQI + QEQTLTFVPKILSVVAAIAVFGSWMLRVLIEYTQNILININQFIK" + gene complement(2394989..2395789) + /locus_tag="Ccel_2035" + CDS complement(2394989..2395789) + /locus_tag="Ccel_2035" + /inference="protein motif:TFAM:TIGR01103" + /note="TIGRFAM: flagellar biosynthetic protein FliP; + PFAM: type III secretion system inner membrane P protein; + KEGG: cth:Cthe_0481 flagellar biosynthesis protein FliP" + /codon_start=1 + /transl_table=11 + /product="flagellar biosynthetic protein FliP" + /protein_id="ACL76381.1" + /db_xref="InterPro:IPR005837" + /db_xref="InterPro:IPR005838" + /translation="MNKKRKFKRLIMFTAILTVIFCLMGGQALAEPTVSVTRDGINIG + ASSDPKEVSSSIQLLIALTVLAIAPSILIMMTGFTRIIIILSFLRNALGTQQMPPNQV + LIGLALFITLFVMSPVLSDINENAFQPYSDGKITQQQAIDKSSQTIKTWMVKQIFSNN + REKDLELFMTLGGQKDPIRVQDASKLSLTIVAPAFLISELTIAFKFGFLIFLPFLIID + MVVSSALMSMGMMMLPPIMISLPFKILLFVLVDGWSMLTQSIITSFAR" + gene complement(2395782..2396252) + /locus_tag="Ccel_2036" + CDS complement(2395782..2396252) + /locus_tag="Ccel_2036" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0480 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76382.1" + /translation="MMKEITVILAFIVVMALLLLTTRYLAYKSKKMLKGNYMQIIETL + SLGTNNRIHLIKVDKDFFIVAASNKNVEFLTKVNINDYQEQDIKNPISEVVDFTSVLK + KYTNGLSFGSKTKEKVPEPSQTENAGENNVVFRSNLEKLKNLANSMNNHRSENE" + gene complement(2396437..2396799) + /locus_tag="Ccel_2037" + CDS complement(2396437..2396799) + /locus_tag="Ccel_2037" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; + KEGG: cth:Cthe_0479 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="response regulator receiver protein" + /protein_id="ACL76383.1" + /db_xref="InterPro:IPR001789" + /translation="MGKSILIVDDAAFMRMMIKDILSKNGYEIAADVDNGLKAIEKYK + ELTPDLVIMDITMPEMDGVTAVREIKKIHNDAKIIMCSAMGQQAMVIESIQAGARDFI + VKPFQADRVVEAVKKVIG" + gene complement(2396836..2398044) + /locus_tag="Ccel_2038" + CDS complement(2396836..2398044) + /locus_tag="Ccel_2038" + /inference="protein motif:TFAM:TIGR02480" + /note="TIGRFAM: flagellar motor switch protein FliN; + PFAM: surface presentation of antigens (SPOA) protein; + CheC domain protein; + KEGG: cth:Cthe_0478 flagellar motor switch protein" + /codon_start=1 + /transl_table=11 + /product="CheC, inhibitor of MCP methylation / FliN fusion + protein" + /protein_id="ACL76384.1" + /db_xref="InterPro:IPR001172" + /db_xref="InterPro:IPR001543" + /db_xref="InterPro:IPR007597" + /db_xref="InterPro:IPR012826" + /translation="MGDMLTQAEIDALLNGTSSSEEPEDATGSSDTTGTLTSQEIDAL + GEIGNISMGTSATTLFTLLSQKVTITTPNVTLSTWEDLSKNYSSQYVAVKVEYTDGLI + GSNLLILKQDDVKIITDLMMGGEGVKIEGDLTDLHLSAISEAMNQMIGSSATSMSTVF + CKRIDISPPKAYIISFDSSDPYGDFKQDEQLVKVAFKMVVGNLIDSEIMQLLPIKFAK + ELVSSLLNSTETKQDPVKVEPPQAPQAPVPSQMAPSFDNQNSYIEPPLQPVMQPQIPQ + PMMQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVTEKKNISLIMDLPLQV + TVELGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRI + TDIIHPSKRL" + gene complement(2398045..2399031) + /locus_tag="Ccel_2039" + CDS complement(2398045..2399031) + /locus_tag="Ccel_2039" + /inference="protein motif:PFAM:PF02154" + /note="PFAM: surface presentation of antigens (SPOA) + protein; flagellar motor switch protein FliM; + KEGG: cth:Cthe_0477 flagellar motor switch protein FliM" + /codon_start=1 + /transl_table=11 + /product="flagellar motor switch protein FliM" + /protein_id="ACL76385.1" + /db_xref="InterPro:IPR001543" + /db_xref="InterPro:IPR001689" + /translation="MGDILSQNEIDELLKALTTGDIDVQQIQSTKTEKKVKIHDFKKP + PKFANDHKRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVI + LGIVDFTPLNGSVIFEMDPSIAYALIDRILGGRGASMERVRSFTEIELAIIERIIIQI + LNLMREPWESIIAIKPRLEKIETNAQFAQIIHPNEMVALITLNVVVGEVKGLINICIP + HITVEPIMPKLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFL + DLQGGDVLPLDTNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED" + gene complement(2399044..2399553) + /locus_tag="Ccel_2040" + CDS complement(2399044..2399553) + /locus_tag="Ccel_2040" + /inference="protein motif:PFAM:PF03748" + /note="PFAM: flagellar basal body-associated protein FliL; + KEGG: cth:Cthe_0476 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="flagellar basal body-associated protein FliL" + /protein_id="ACL76386.1" + /db_xref="InterPro:IPR005503" + /translation="MEGKSSYFILLVIVAFLSITLAFLAIGFFVFGNNGSGGDQEVVV + VTDKVPSDNDLEIKTIFENRNFNLKKTDNKQVAVISVSASMKYYKTVDDMKEEAVAEK + IDFYSKEINQAIGTYFQGLTLDDVSQLEAKKEASDYLTKEINEILTKNEKKASPLVYN + LIFDYWLYQ" + gene complement(2399653..2399850) + /locus_tag="Ccel_2041" + CDS complement(2399653..2399850) + /locus_tag="Ccel_2041" + /inference="protein motif:PFAM:PF06289" + /note="PFAM: flagellar FlbD family protein; + KEGG: cth:Cthe_0475 flagellar protein" + /codon_start=1 + /transl_table=11 + /product="flagellar FlbD family protein" + /protein_id="ACL76387.1" + /db_xref="InterPro:IPR009384" + /translation="MIRLTRLNKTIFVLNSDLIESFESKPDTIITLASGKKYVVCESV + DEVIDKVMQFKAGILKYANEN" + gene complement(2399980..2401344) + /locus_tag="Ccel_2042" + CDS complement(2399980..2401344) + /locus_tag="Ccel_2042" + /inference="protein motif:PFAM:PF06429" + /note="PFAM: flagellar basal body rod protein; protein of + unknown function DUF1078 domain protein; flagellar basal + body FlaE domain protein; + KEGG: cth:Cthe_0474 protein of unknown function + DUF1078-like protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1078 domain + protein" + /protein_id="ACL76388.1" + /db_xref="InterPro:IPR001444" + /db_xref="InterPro:IPR010930" + /db_xref="InterPro:IPR011491" + /translation="MMRSMFSGVSGLKAHQAKMDVIGNNVANVNTLGFKAGRVTFQEI + FNQTLRGAGAPDAATARGGTNPMQIGLGIAVGSIDNQMTGGSPQRTDNPTDLSISGDG + FFIVKGSIADTFKFTRAGNFGLDKLGNLVSGDGMNVYGWTKYDTLGDGTVKFDTEAEI + TPINLYSDVTNGNKKIIAAKATSYAEFSGNLNSALPILADPDDSDPQFTVPFTIYDSL + GNAHELMVNFKKTDDLTDIPVKLPDGTDGTEPGTEWTYTISDKAGNSVLTDAGKVNFN + SKGKLVLGDNDAPEQRIMEFDPGQNSGTGKINITLDFKKLTQYAGDNSVKPSNIDGYT + TGNLVTFNIGSDGMLTGVYSNGQQQPLGLIALAGFDNPAGLQKVGGNLFIPTTNSGDF + TKGVPAGSQGVGTLSPGTLEMSNVDLSREFTDMIVTQRGFQANSRIITTSDEMLQELV + NLKR" + gene complement(2401446..2401847) + /locus_tag="Ccel_2043" + CDS complement(2401446..2401847) + /locus_tag="Ccel_2043" + /inference="protein motif:TFAM:TIGR02530" + /note="TIGRFAM: flagellar operon protein; + KEGG: cth:Cthe_0473 flagellar operon protein" + /codon_start=1 + /transl_table=11 + /product="flagellar operon protein" + /protein_id="ACL76389.1" + /db_xref="InterPro:IPR013367" + /translation="MVINNNYPNRIIKPPITTGKVQTGNHRNVNTNPAGVNFENFLQQ + AIDKGSGVKFSKHAEMRMQARNIDLTQTQKDKISNAVSKAQQKGIKDSLVILDDMAFV + INVNSKTVVTAVNNNELKENVFTNIDGAIFA" + gene complement(2401887..2402744) + /locus_tag="Ccel_2044" + CDS complement(2401887..2402744) + /locus_tag="Ccel_2044" + /inference="protein motif:PFAM:PF03963" + /note="PFAM: flagellar hook capping protein; + KEGG: cth:Cthe_0472 flagellar hook capping protein" + /codon_start=1 + /transl_table=11 + /product="flagellar hook capping protein" + /protein_id="ACL76390.1" + /db_xref="InterPro:IPR005648" + /translation="MAEANRISNALTIDQIIESTKSKQEAAARKTGGELGKNDFLNLL + VTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMNGSMTKSQAFNLIGKVITATTTDD + KTLEVNSVQGTVTSVKMKEGKTFVVVNNKDVDVDSITQVDDALYNSYANLADYSNLLG + YKVKGAVYDSSNGNVIYLSGNVKQIQRGANEDYAVMDGVNVEIAEVTGSTSVDPNYLK + NYLDQKVKGTTEADKQVKVTIKDSTGAKVPVTATLNSFSIDENTGKVTAVLDNMYISV + YSVSNIQKP" + gene complement(2402759..2404291) + /locus_tag="Ccel_2045" + CDS complement(2402759..2404291) + /locus_tag="Ccel_2045" + /inference="protein motif:PFAM:PF02120" + /note="PFAM: flagellar hook-length control protein; + KEGG: cth:Cthe_0471 flagellar hook-length control protein" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-length control protein" + /protein_id="ACL76391.1" + /db_xref="InterPro:IPR001635" + /translation="MIMTGSNLLKLNLNQDSGNDILNIKSKTSQSSPGTSFKSVLDNT + VNNYSKRNDTAANNINGQDNESKTKFKSFAQVQMSRKSVSTKSVVQPDSNAKIADIDT + DNLQVSEQYDEQIVALAQMLGISPAQLADLAKQLGFSLKDLKDINKLTIFMQKVSELL + ELNDKQKDILLQLATEVTKQIKPEAEAVTKNGNNIPADVDNNSQAGKVSVDLSKVASS + VKDKLDTLIENGQNNPGLISDEAAKIIAVMKSQSKPMITVDSPNIDTDVVKEVSLEGD + NNRADSKKVDTETKTKDVPKENNDESTESTKPQLGLQGLNTSAQTATDEQNLTQNFQA + VGDVKAVLNNSQVNAEKSVFSVRQPIKTADVVNQVMEQAKVILGQDKSEMVIQLKPDH + LGKLELKVVTEQGIVAAKFIAESHQVKEIIETNMQLLKDSLQKQGISIDGVSVQVRQD + NRSESRNQSLSQGKNSSSGNGVKHTEGVTGSTVAGASILENLPERLAQYTDDLNTINL + TA" + gene complement(2404362..2405231) + /locus_tag="Ccel_2046" + CDS complement(2404362..2405231) + /locus_tag="Ccel_2046" + /inference="similar to AA sequence:KEGG:Cthe_0470" + /note="KEGG: cth:Cthe_0470 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76392.1" + /translation="MPENINITEQDEKVETLLKKPEVPKTQNKKTTSALFYIVSIITA + LLIVVLIIGGALFLAVKYNVNGIADSMGDSVRGIPVLKWSLPEKPDPEDEKSMTEEQV + RSKYNEIKKQKEELEEQVVDLAKQLDNSKNQVTAKDSNSSLLQQQKDALETEKDKLQT + EKDNIQKDYDKLSEVISAGDTAEYKNYFKKINPQKAEELYESIIKEEKISDDIKKYCS + IYEQMDASAVAGIMEQMGSNKMTLIIEIMKNLKKDTTGEILTEMTPAFAAKVSEQLAK + EYKVGVSGSTSKK" + gene complement(2405215..2405682) + /locus_tag="Ccel_2047" + CDS complement(2405215..2405682) + /locus_tag="Ccel_2047" + /inference="protein motif:TFAM:TIGR02473" + /note="TIGRFAM: flagellar export protein FliJ; + PFAM: flagellar FliJ protein; + KEGG: cth:Cthe_0469 flagellar export protein FliJ" + /codon_start=1 + /transl_table=11 + /product="flagellar export protein FliJ" + /protein_id="ACL76393.1" + /db_xref="InterPro:IPR000809" + /db_xref="InterPro:IPR012823" + /translation="MQKFGFRLESVRNLKVQMEDNAKNNMALASRELEKQKEFLTGLQ + TTRESSISELNSKVDQGISISQIRAYNNYLSFLKQKITVQKENVNIARIQVDIRRESL + VKAVQERKILDKLREKKYDEFLKEQSKAEQLLIDELNSFKFKDGSGEKNAGKY" + gene complement(2405699..2407012) + /locus_tag="Ccel_2048" + CDS complement(2405699..2407012) + /locus_tag="Ccel_2048" + /inference="protein motif:TFAM:TIGR03496" + /note="KEGG: cth:Cthe_0468 flagellar protein export ATPase + FliI; + TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; + PFAM: H+transporting two-sector ATPase alpha/beta subunit + central region; H+transporting two-sector ATPase + alpha/beta subunit domain protein; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ATPase FliI/YscN" + /protein_id="ACL76394.1" + /db_xref="InterPro:IPR000194" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004100" + /db_xref="InterPro:IPR005714" + /translation="MSGVNLLKYREALKSKEYIDYIGKVSKVVGLTIESDGPQVSIGD + LCNIHIIGGSKLKAEVVGFKDEKVLLMPLGEMTGIGPGSTVSANGDILKVAVGPQLVG + RVLDGLGNPIDDKGSLQSKHYYKTDNKPPNPLTRKRISEPLPLGVRAIDGLLTIGKGQ + RVGIFAGSGVGKSTLMGMVARNTKADINVIALIGERGREVREFLERDLTDEGLARSVV + VVATSDQPALIRLKGAMVATAIAEYFRDCGKDVLLLMDSLTRYAMAQREVGLSIGEPP + VSRGYTPSVFSVFPKLLERAGTSDKGSITGLYTVLVDGDDLTEPVTDTARGILDGHIV + LSRSMANKNHYPAIDVLASVSRVMGDIIDKEHKKSANEIKKVMAVHRDSEDLINIGAY + VKGSNEKIDYAIECIEDITSFLQQETDEKVSFEDIHSQVLSLLKQ" + gene complement(2407045..2407821) + /locus_tag="Ccel_2049" + CDS complement(2407045..2407821) + /locus_tag="Ccel_2049" + /inference="protein motif:PFAM:PF02108" + /note="PFAM: flagellar assembly protein FliH; + KEGG: cth:Cthe_0467 flagellar biosynthesis/type III + secretory pathway protein-like protein" + /codon_start=1 + /transl_table=11 + /product="flagellar assembly protein FliH" + /protein_id="ACL76395.1" + /db_xref="InterPro:IPR000563" + /translation="MSNKIYKNNQVNVGVPFQVKSPLTYQRPVKNIGLKLDVAQHIEE + EQTKVDYNAIGEEIVNKAKAEADMIIKEALLEAKDIIKNASVDVENLKQQVYEEARSE + GYEQGSAQAKKEYEELIREAQDIKSQAGIEYKKVLDSLEEDTVNTILDIAKKVISKEL + ECKQNILLLVKDAFEKCSKDQKAVLKLSEQDFDFVNENKDELESMLERSEEIEIKKDL + SLKEGGCIIETSFGSIDASAATKIEKIENDFKDILNESTN" + gene complement(2407814..2408841) + /locus_tag="Ccel_2050" + /note="ribosomal slippage" + CDS complement(join(2407814..2408275,2408275..2408841)) + /locus_tag="Ccel_2050" + /inference="protein motif:TFAM:TIGR00207" + /ribosomal_slippage + /note="TIGRFAM: flagellar motor switch protein FliG; + KEGG: cth:Cthe_0466 flagellar motor switch protein G" + /codon_start=1 + /transl_table=11 + /product="flagellar motor switch protein FliG" + /protein_id="ACL76396.1" + /db_xref="InterPro:IPR000090" + /translation="MKRLAKASAKTEYSGREKAAMLLISLGPEKSAEIFKHLKEDEIE + QLTLEIANIRAVTRDEKERVLEDFYQICLAQEYIAEGGIGYAKDILEKALGSQKAVDI + INKLTVSLQVRPFDFVRKTDPSQLLNFIQGEHPQTIALILAYLKPHQASVVLSALPQD + KQADVARRVATMDRTSPDIIKEVERILEKKLSSLVTEDYTAAGGVQSIVDILNSVDRG + TEKFIMETLEIEDTDLAEEIKRRMFVFEDILTLDGRSIQRFLREVDNNQLAVALKGAT + DDVQKLIFANMSKRLSEMIREDLEFMGPVRLKDVEEAQQKIVNIIRKLEDAGEIVISR + GGGDEIIV" + gene complement(2408859..2410430) + /locus_tag="Ccel_2051" + CDS complement(2408859..2410430) + /locus_tag="Ccel_2051" + /inference="protein motif:TFAM:TIGR00206" + /note="TIGRFAM: flagellar M-ring protein FliF; + PFAM: secretory protein YscJ/FliF family protein; + Flagellar M-ring domain protein; + KEGG: cth:Cthe_0465 flagellar M-ring protein FliF" + /codon_start=1 + /transl_table=11 + /product="flagellar M-ring protein FliF" + /protein_id="ACL76397.1" + /db_xref="InterPro:IPR000067" + /db_xref="InterPro:IPR006182" + /db_xref="InterPro:IPR013556" + /translation="MPEFLTRLLKPLLDFWKGLDKSQKTRIFIITGVVVVSVGIGLFL + ITRPTYTTVISNASSADVAAMQKILKEKGISYKLTDDKSGIIVNEKDSDEAHFELSTG + SKSGFTFADALSNLKINTTESDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKT + LLIDDSNSKDAKASVVITPKDEISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILN + IDSESGMDKTSTQYDMKKKYKNDLERNLREVLVDQLDSFDTAKVVVNPVLDFDTLTQS + SKEYTNPNGADSGAILSRQETREDLKNGDTGGTPGVNSNPGTTPTYPAGSDDSKSYKK + SDLTENFQYNETNKQIEKSLGELIPERSSAAITLLYGNRVLDDSKLNDEMITQVKNLA + SMATGIPAENIAVTKLKIQPPVVETPSTADTIRNLISNYGLLALLALMAIAFVIIALP + KKSKQKLEPALAVDDNAAITSPKFVYNEIRPEPVPEIDTEERSEVKKQIDKFVKQKPD + AVAQLLRNWLTDDYE" + gene complement(2410535..2410843) + /locus_tag="Ccel_2052" + CDS complement(2410535..2410843) + /locus_tag="Ccel_2052" + /inference="protein motif:TFAM:TIGR00205" + /note="TIGRFAM: flagellar hook-basal body complex subunit + FliE; + PFAM: flagellar hook-basal body complex protein FliE; + KEGG: cth:Cthe_0464 flagellar hook-basal body complex + subunit FliE" + /codon_start=1 + /transl_table=11 + /product="flagellar hook-basal body complex subunit FliE" + /protein_id="ACL76398.1" + /db_xref="InterPro:IPR001624" + /translation="MAVDKIGEVQRLIPDNLSLKGINDNKNTPEVSFGDYLKSALTKV + SDLEDQAKNLQEDFALGKTDNIPEVLIAGEKASVALQFTMQIRNKILDAYSEIMRMQI + " + gene complement(2410884..2411327) + /locus_tag="Ccel_2053" + CDS complement(2410884..2411327) + /locus_tag="Ccel_2053" + /inference="protein motif:TFAM:TIGR01395" + /note="TIGRFAM: flagellar basal-body rod protein FlgC; + PFAM: flagellar basal body rod protein; protein of unknown + function DUF1078 domain protein; + KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC" + /codon_start=1 + /transl_table=11 + /product="flagellar basal-body rod protein FlgC" + /protein_id="ACL76399.1" + /db_xref="InterPro:IPR001444" + /db_xref="InterPro:IPR006299" + /db_xref="InterPro:IPR010930" + /translation="MGIFSALDISASGLTAQRVRMDTISQNIANANTTRTTDGTPYRR + RDVVFEERTDSNSFSRTLENASSKLNGGNGVRVSSIVEDPTEFKKVFDPGHPDADAEG + YVNMPNVDIVTEMVNMISATRSYEANVTSVNATKSMALKALEIGK" + gene complement(2411330..2411743) + /locus_tag="Ccel_2054" + CDS complement(2411330..2411743) + /locus_tag="Ccel_2054" + /inference="protein motif:TFAM:TIGR01396" + /note="TIGRFAM: flagellar basal-body rod protein FlgB; + KEGG: cth:Cthe_0462 flagellar basal-body rod protein FlgB" + /codon_start=1 + /transl_table=11 + /product="flagellar basal-body rod protein FlgB" + /protein_id="ACL76400.1" + /db_xref="InterPro:IPR006300" + /translation="MIEKLYEKNNLLEKSISASWTRNEVISQNLANIDTPNYKRKDVT + FEQYLNDSLDSRKLEGITTDERHIPIKSKNIEKVKPEITLDNSDTSMRIDGNNVDVDS + EMAYLAKNTIQYNTLIQMINSNFSRIKSVISEGRR" + gene complement(2411881..2413191) + /locus_tag="Ccel_2055" + CDS complement(2411881..2413191) + /locus_tag="Ccel_2055" + /inference="protein motif:TFAM:TIGR00137" + /note="TIGRFAM: gid protein; + PFAM: glucose-inhibited division protein A; + KEGG: cth:Cthe_0461 gid protein" + /codon_start=1 + /transl_table=11 + /product="gid protein" + /protein_id="ACL76401.1" + /db_xref="InterPro:IPR002218" + /db_xref="InterPro:IPR004417" + /db_xref="InterPro:IPR013027" + /translation="MSRKVNVIGAGLAGCEAAYQIAKRGINVTLYEMKPQKSTPAHHS + ADFAELVCSNSLRSDQLENAAGLLKEELRVMDSLIMKAADETKVPAGGALAVDREGFS + QYITRQIKENSNIEIIHTEMDKVPDENTTIIATGPLTSEPMFNYIKNITGKDYLHFFD + AAAPIVTYESINMDKAFKAARYGKGSEDYINCPMTKEEYEIFYDALVNAEAAEIKDFE + KNMVFEGCMPIESMALRGKDTMRFGPLKPVGLVDARTNIKPFAVVQLRQDNKNATLYN + IVGFQTHLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTYINSPRLLDNTYRLKSNENL + YFAGQITGVEGYIESTSSGFIAGINAAAQCMGKERIIFQPNTALGALSNYISDESIRN + FQPMNINFGIFNGIDSSITSIRDKKRRNMEIAKNSVNNIKKIEL" + gene complement(2413347..2415467) + /locus_tag="Ccel_2056" + CDS complement(2413347..2415467) + /locus_tag="Ccel_2056" + /inference="protein motif:TFAM:TIGR01051" + /note="KEGG: cth:Cthe_0460 DNA topoisomerase I; + TIGRFAM: DNA topoisomerase I; + PFAM: TOPRIM domain protein; DNA topoisomerase type IA + central domain protein; DNA topoisomerase type IA zn + finger domain protein; + SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase + I DNA-binding; Toprim sub domain protein" + /codon_start=1 + /transl_table=11 + /product="DNA topoisomerase I" + /protein_id="ACL76402.1" + /db_xref="InterPro:IPR000380" + /db_xref="InterPro:IPR003601" + /db_xref="InterPro:IPR003602" + /db_xref="InterPro:IPR005733" + /db_xref="InterPro:IPR006154" + /db_xref="InterPro:IPR006171" + /db_xref="InterPro:IPR013497" + /db_xref="InterPro:IPR013498" + /translation="MADNLVIVESPGKVKSISKFLGKGYKVEASVGHVRDLPKSQMGV + DIDNDFEPKYITIRGKGDVISKLKKEAKAAKKVFLATDPDREGEAISWHLAKILNIDE + KQKCRVSFNEITQNAVKNAIKQPRTIDMGLVDAQQARRVLDRIVGYKISPLLWKKVRK + GLSAGRVQSVATKMICDREDEIEKFESQEYWSIIAKLVKPKASPNFGAKFYGIGKEKL + ELTNEEQVNSILEEINKSQYIVQKVKEQEKKRAAAAPFITSTLQQEASRKLGYTTKRT + MMVAQQLYEGIEIKGRGSVGLITYMRTDSTRISTDAQNEAREYIKTKYGQDYIPEKPR + EYKNKSASQDAHEAIRPTYIDLPHEQIKEYLSPEQYKLYRLIWDRFISSQMSSAIYDT + VSADITAGKYLFKANGSKVKFPGFMVLYTEGNDNEGKDEAEQDEKENKLPQLNEGDIL + ELKENTPKQHFTQPPARYTEATLVRALEEKGIGRPSTYAPTITTILSRGYVLKEKKLL + VPTELGKIVNDIMKNHFENIVDTKFTAEMESELDSVEDGDKEWKAVMRDFYSSFAGVL + KKAEESIGDVELPVEVSDVQCDKCGRYMVVKHGRFGKFLACPGFPECRNAKPIVEEAG + VECPICKGKVLIKKTKKGRKYIGCEKNPECPFMSWDMPSPNKEVCSVCGSFMLQKFSG + KKKVLKCSNDKCTSNIEASKDNTK" + gene complement(2415617..2416741) + /locus_tag="Ccel_2057" + CDS complement(2415617..2416741) + /locus_tag="Ccel_2057" + /inference="protein motif:TFAM:TIGR00732" + /note="TIGRFAM: DNA protecting protein DprA; + PFAM: SMF family protein; + KEGG: cth:Cthe_0459 DNA protecting protein DprA" + /codon_start=1 + /transl_table=11 + /product="DNA protecting protein DprA" + /protein_id="ACL76403.1" + /db_xref="InterPro:IPR003488" + /db_xref="InterPro:IPR013838" + /translation="MREIEYWIWLTSLEGLSSKKALNLLETYRNPEVIYGLSESELQN + TRGLTEKNVKELLNSNKRERVGSIYQMLVRYNIKMVNIFEENYPQKLKNIYDPPIALY + YRGNLDSDSFSIAVVGSRRTTGYGANTARKLSYDLAMRGVTIVSGLARGIDSIAHKGC + LDAGGKTIAVLGSGLDNIYPPENAGLFKDIIDSGGLALSEYPPGMPPLQHNFPARNRI + ISGISGGVVVIEAAKRSGSLITAGCALEQGREVFAVPGNIDCAYSMGTNQLIKEGAKL + VLNATDVLEEFEYNGIQNFTPVQGDIDEKISKKYLNLFKGLSAGEIKILKVIFNGANN + IDEILERSNFSAKDASSILFMLEMKGVIKQNPGKLFEVII" + gene complement(2416753..2418282) + /locus_tag="Ccel_2058" + CDS complement(2416753..2418282) + /locus_tag="Ccel_2058" + /inference="protein motif:TFAM:TIGR00368" + /note="TIGRFAM: Mg chelatase, subunit ChlI; + PFAM: magnesium chelatase ChlI subunit; ATPase associated + with various cellular activities AAA_5; + KEGG: cth:Cthe_0455 Mg chelatase, subunit ChlI" + /codon_start=1 + /transl_table=11 + /product="Mg chelatase, subunit ChlI" + /protein_id="ACL76404.1" + /db_xref="InterPro:IPR000523" + /db_xref="InterPro:IPR001208" + /db_xref="InterPro:IPR004482" + /db_xref="InterPro:IPR011704" + /translation="MVSKVKSCALLGIDGCIVDVETDISNGIPNFDVVGLGDMAVRES + RERVRAAIKNTGIDFPVRRITINLAPANLRKGGSMYDVSIAVGILLASEIIKNSDLSS + YMFLGELSLDGSIKTVEGIISMVCCATLNNIKNIFVPLENSDEAAVFSNVNILPVKNL + TDIIKHLNGEKIIKSYYTDIKNIFLHNTKDSLDFCDVKGQASVKRAMEVAACGAHNML + MIGSPGSGKTMLAKRLPSILPDLTFEEAVQITKIHSISGLLPGNSSLITHRPFRNPHH + TISAVSLVGGGKQCKPGEVSLAHYGVLFLDEFPEFEKDAIEVLRQPLEDGEITISRVT + GSITYPARTTLICAANPCRCGYYLDPSNKCSCTPKMVQQYLGKLSQPLLDRIDIHAEI + HPVRYDDLHNNGNEETSAVIRERVNKARNIQTDRYTGLGIYSNSELTPALIRKYCELD + RKTSSLLKMAFERLGLSARAYDKILKVARTIADMDDSEKIKSEHVAEAIQYRSMDRIK + I" + gene complement(2418478..2418942) + /locus_tag="Ccel_2059" + CDS complement(2418478..2418942) + /locus_tag="Ccel_2059" + /inference="protein motif:PFAM:PF03477" + /note="PFAM: ATP-cone domain protein; + KEGG: cth:Cthe_0450 transcriptional regulator NrdR" + /codon_start=1 + /transl_table=11 + /product="ATP-cone domain protein" + /protein_id="ACL76405.1" + /db_xref="InterPro:IPR003796" + /db_xref="InterPro:IPR005144" + /translation="MKCPFCGFIEDKVIDSRPTDEGSSIRRRRECTKCSRRFTTYEKV + ESLPLMVIKKDKSRQPFNREKLMNGLLRACEKRPISINDLEKMVENIEAQLHNSLQRE + VTTVDIGEIVMSKLKTMDEVAYVRFASVYRQFKDINTFMDELRKLLREEKIE" + gene complement(2419035..2419295) + /locus_tag="Ccel_2060" + CDS complement(2419035..2419295) + /locus_tag="Ccel_2060" + /inference="protein motif:TFAM:TIGR02888" + /note="TIGRFAM: sporulation protein, YlmC/YmxH family; + PFAM: PRC-barrel domain protein; + KEGG: cth:Cthe_0449 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein, YlmC/YmxH family" + /protein_id="ACL76406.1" + /db_xref="InterPro:IPR007903" + /db_xref="InterPro:IPR014238" + /translation="MRRASSLKDKEVINVSDGTRLGMVSDVEINLNDGRIEGIVVPIQ + GKWFGLFGKDNEYIIPWESIIKVGDEIILVEMSESIVKKFLE" + gene complement(2419387..2420160) + /locus_tag="Ccel_2061" + CDS complement(2419387..2420160) + /locus_tag="Ccel_2061" + /inference="protein motif:TFAM:TIGR02850" + /note="TIGRFAM: RNA polymerase sigma-G factor; RNA + polymerase sigma factor, sigma-70 family; RNA polymerase + sigma-70 factor, sigma-B/F/G subfamily; + PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 + domain protein; sigma-70 region 4 domain protein; Sigma-70 + region 4 type 2; + KEGG: cth:Cthe_0448 sporulation sigma factor SigG" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, SigG" + /protein_id="ACL76407.1" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007624" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014212" + /db_xref="InterPro:IPR014284" + /db_xref="InterPro:IPR014322" + /translation="MLINKVEICGVNTSKLPVLTNEQKKELFERMHKGDNSARDEFIK + GNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLIKSIDNFDVTQNVKFSTYAVPMIIGEI + RRYLRDNNSIRVSRSLRDIAYKALQAKERLTTQNSKEPTIVELAQELQLPKEDIVFAL + DAIQDPISLFESVYHDGGDAIYVMDQVSDDKNIDENWLETISLKEAMRKLNDREKLIL + NLRFFEGRTQMEVADEIGISQAQVSRLEKTALMHMKKYI" + gene complement(2420297..2421028) + /locus_tag="Ccel_2062" + CDS complement(2420297..2421028) + /locus_tag="Ccel_2062" + /inference="protein motif:TFAM:TIGR02835" + /note="TIGRFAM: RNA polymerase sigma-E factor; RNA + polymerase sigma factor, sigma-70 family; + PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 + domain protein; + KEGG: cth:Cthe_0447 sporulation sigma factor SigE" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, SigE" + /protein_id="ACL76408.1" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR014200" + /db_xref="InterPro:IPR014284" + /translation="MNFVSRCKMYLLIKYEMLLRKFKIGSVFPVHYIGGSEALPPPLT + LDEETYLLNKLEQSDYGVKSILIERNLRLVVYIARKFENTGVGVEDLISIGTIGLIKA + INTFNPSKNIKLATYASRCIENEILMYLRRNNRVKAEISIDEPLNIDWDGNELLLSDI + LGTENDMIHRSIEDEVDKELLATAMKKLSVREKKIMELRFGLSNGVEKTQKEVADMLG + ISQSYISRLEKRIISRLKKEISRMT" + gene complement(2421069..2421968) + /locus_tag="Ccel_2063" + CDS complement(2421069..2421968) + /locus_tag="Ccel_2063" + /inference="protein motif:TFAM:TIGR02854" + /note="TIGRFAM: sigma-E processing peptidase SpoIIGA; + PFAM: peptidase U4 sporulation factor SpoIIGA; + KEGG: cth:Cthe_0446 peptidase U4, sporulation factor + SpoIIGA" + /codon_start=1 + /transl_table=11 + /product="sigma-E processing peptidase SpoIIGA" + /protein_id="ACL76409.1" + /db_xref="InterPro:IPR005081" + /translation="MEIYLDVLILENLVINYLILYVTAKFSRYRTSTLRLFSGAIIGA + IYVGIIIIEPDIKVFYTTLAKILLSFFIIAVTFSPRKIMTFIKTLVIFYISTFIFAGA + ALAFLFFNEQGGFVKNGIVYVFGQSKWSLMFFSLVTVGIIIKIFMEIIQSKFTRENLL + IPVKIAFDNRKIGFSALVDTGNSLKDPLTNNPVMVVEFKALEELLPIEIKDIFKNSKE + DDLSCVTTTISTSKWFSRFRLIPFSSLGKENGMLIGFKPDFIEIGEEEEKRDVKNVIV + GIYNRSLSRNEKYKALLGPELVA" + gene complement(2422211..2423353) + /locus_tag="Ccel_2064" + CDS complement(2422211..2423353) + /locus_tag="Ccel_2064" + /inference="protein motif:TFAM:TIGR00065" + /note="TIGRFAM: cell division protein FtsZ; + PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; + KEGG: cth:Cthe_0445 cell division protein FtsZ" + /codon_start=1 + /transl_table=11 + /product="cell division protein FtsZ" + /protein_id="ACL76410.1" + /db_xref="InterPro:IPR000158" + /db_xref="InterPro:IPR003008" + /db_xref="InterPro:IPR008280" + /translation="MLDFEIDMDHFAQIKVIGCGGGGNNAVNRMIAAGLRGVDFIAIN + TDKQALFLSKANTKIQIGDKLTKGLGAGANPEIGEKAANESRDEIAQAIKGADMVFVT + AGMGGGTGTGAAPVVAQLAREMGILTVAVVTKPFMFESRTRMQHAERGIECLKNSVDS + LVTIPNDRLLQVVEKRTTMVEAFRMADDVLRQGVQGISDLIAVPGLVNLDFADVKTIM + LSSGLAHMGVGKASGESRAEEAAKQAIQSPLLETSIEGSRRVLVNITGGPDLGLFEVN + TAAELVQKSADPEANIIFGAVIDDNLKDELMITVIATGFETSPILKKTEKPAEKVLKH + PVSANTSTSVESGSYGSDSQEKSSSGSMSVDNELDIPTFLRRNRFK" + gene complement(2423511..2424755) + /locus_tag="Ccel_2065" + CDS complement(2423511..2424755) + /locus_tag="Ccel_2065" + /inference="protein motif:PFAM:PF02491" + /note="PFAM: cell division protein FtsA; + KEGG: cth:Cthe_0444 cell division protein FtsA" + /codon_start=1 + /transl_table=11 + /product="cell division protein FtsA" + /protein_id="ACL76411.1" + /db_xref="InterPro:IPR003494" + /db_xref="InterPro:IPR013126" + /translation="MSDNIVGIDIGTSKVSTVIGRINSVGEVEVLGKGTDLCTGVKKG + IIVDIEAVSSSIRKSVKMAETQAEIKVVTAYVNISGLHVDIINHKNFVNIISDGKEIT + RNDVQKLLYSAGTMEIPEGSEIIDVVPRQYIVDGYDGITDPVGMKGATLEGDFDVVIG + KIISVQNIVRSMEKAGLKVDGIIPEGFSAGECILAPDEKEMGVILIDVGGGSTEISVF + KNEMLVMNKCIPVGGDHITNDLSIALKITYSEAEKVKRQLQLASTALIKHDQDITVND + ISESFKKNIKVSDIIEVIEARVYEIFSICCDLVQKNCPGNYGAGVVLSGNGISTMDGS + VQIANELFNLPVRIASPKIRNISGLQHCTAAGIINYIGKQDREASTTSSVSKKADPRP + VKKAKQHSVFKKALNALKEFFY" + gene complement(2424808..2425170) + /locus_tag="Ccel_2066" + CDS complement(2424808..2425170) + /locus_tag="Ccel_2066" + /inference="protein motif:PFAM:PF06947" + /note="PFAM: protein of unknown function DUF1290; + KEGG: cth:Cthe_0443 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1290" + /protein_id="ACL76412.1" + /db_xref="InterPro:IPR009709" + /translation="MIPILGLILGIIVGLFIPITIPSEYFTYVAVAILAALDSVFGGI + VAGINKKFEMRIFLSGFFGNALLAAGLAYIGDKLGIQIYFAAIFAFGNRLFLNFALIR + RYLLNKMFKKDNIVKEDA" + gene complement(2425210..2426049) + /locus_tag="Ccel_2067" + CDS complement(2425210..2426049) + /locus_tag="Ccel_2067" + /inference="protein motif:PFAM:PF08478" + /note="PFAM: Polypeptide-transport-associated domain + protein FtsQ-type; + KEGG: cth:Cthe_0442 cell division protein FtsQ" + /codon_start=1 + /transl_table=11 + /product="Polypeptide-transport-associated domain protein + FtsQ-type" + /protein_id="ACL76413.1" + /db_xref="InterPro:IPR013685" + /translation="MNNNRKRNIKTTKDKKKKKYRFRIRRLKKLFIFVLIVTAVVLFA + RSSLFIVDNINVTGNKKYQANEIILRSGLVTGQNVFKMLGEKPKNLFTLKFEDKEKAV + STSMPYISSISIRPSLPKSIKIKVTERTPFCILENKGTNLLIDKQGYALEILKNQNDK + KYFKIIGNSLDSFKLGQEVKYKNKDTMNDLISFCNVLTKNDKDSNQKLYNKLTAVNMS + DPGAVTAVFENRITVKFGDMDNLNYKINFFRQLFVNNITAKQKGTVDFTTGKHPYFAP + QSN" + gene complement(2426056..2437394) + /locus_tag="Ccel_2068" + /pseudo + gene 2427161..2428564 + /locus_tag="Ccel_2069" + CDS 2427161..2428564 + /locus_tag="Ccel_2069" + /inference="protein motif:PFAM:PF08353" + /note="PFAM: Mur ligase middle domain protein; domain of + unknown function DUF1727; + KEGG: cth:Cthe_0440 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="domain of unknown function DUF1727" + /protein_id="ACL76414.1" + /db_xref="InterPro:IPR013221" + /db_xref="InterPro:IPR013564" + /translation="MKLRKTLTIVIAKLTIKILRLLKKGGTTLPGKVAFKLYPDILKS + IANDFEIIMVTGTNGKTTTSRIIEEILKNNNVDYITNKSGANLLSGITTTFIQAVSLF + GKPKYKTALIESDEAAFNQVTKHLQPKSVVVTNFFRDQLDRFGELYSTLNAVKSGLDR + LDEKTTLILNADDSMCASLGHETDKPVFFYGFGEAASENSSENINTDAMFCIFCKGKY + KYKSHVYGHLGGFYCPECGYSRPAADLECIAIEEAASSYTNIKWKCSKALSNDEAEHT + TQINLPGLYNVYNAMAAAACGLSLAYSYETVQKAMESFECGFGRMETINVGDKSIKLI + LVKNPTGFNQVLNFLTLDSQPLNIAFLINDKLADGTDISWLWDVDFEHLNTANDRIVN + LITSGIRGEDMAVRLKYSGLDTRKIRIIKDYQRVIDEGLKAVSSGGCFYILPTYTAML + DIRGILKKKFNLKEFWK" + gene 2428567..2429313 + /locus_tag="Ccel_2070" + CDS 2428567..2429313 + /locus_tag="Ccel_2070" + /inference="protein motif:PFAM:PF07685" + /note="PFAM: CobB/CobQ domain protein glutamine + amidotransferase; + KEGG: cth:Cthe_0439 CobB/CobQ-like glutamine + amidotransferase" + /codon_start=1 + /transl_table=11 + /product="CobB/CobQ domain protein glutamine + amidotransferase" + /protein_id="ACL76415.1" + /db_xref="InterPro:IPR011698" + /translation="MYQLKICHLYPDLLNTYGDMGNILALQRRAQWRGIDISVNNVTI + GDSFDSEGYDLIFLGGGQDYEQEIIQNDLLTQKGAEIRNAVEGGKVFLCICGGYQLMG + KYYKTWDGKELEYLGALDLWTIGGKERMIGNIVFESELITDNNLPLKIVGFENHSGHT + YLGDAVLPLGKVLSGNGNNGSDGFEGAVYKNVYCSYSHGSLLPKNPLLADHLISLALK + HKYDNFENLTPLEDSFENAARVNMIQRILK" + gene 2429744..2430757 + /locus_tag="Ccel_2071" + CDS 2429744..2430757 + /locus_tag="Ccel_2071" + /inference="protein motif:TFAM:TIGR01361" + /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate + aldolase; + PFAM: DAHP synthetase I/KDSA; + KEGG: cth:Cthe_0880 + 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase" + /codon_start=1 + /transl_table=11 + /product="phospho-2-dehydro-3-deoxyheptonate aldolase" + /protein_id="ACL76416.1" + /db_xref="InterPro:IPR006218" + /db_xref="InterPro:IPR006268" + /translation="MIIVMKQSATVKDIESVESRLLDLGFKTHPIHGDIKTVIGAIGD + KRLLNVHAISQMQGVETLVPIMKPYKFASSELQHTPTIIDVGGVQIGGKEIVVMAGPC + AIENEKDFVDTAISVKKSGAKILRGGAFKPRSSPYAFQGLEEDGLKIMVAGREATGLK + LVTEVVDTRDVELVNKYTDIFQIGARNMQNFRLLSEVGMTRKPVLLKRGLSATIEEWL + MAAEYIIAEGNHEVILCERGIRTFETMTRNTLDLSAIPAIKDVSHLPVVVDPSHATGN + WKYVPALAKGAVATGADGLIIEVHPNPPSALCDGPQSLRPERFESLMDELRLVAQAIQ + RTI" + gene complement(2430828..2431175) + /locus_tag="Ccel_2072" + CDS complement(2430828..2431175) + /locus_tag="Ccel_2072" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_1706 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76417.1" + /translation="MNSLLFERDLLYPTQNIIDPGILHVKLLSPANSRIPVIIEPKSI + HSAVDNIRTILDVLQKEIFDRVNIKISENTSVYLKLNEIDKHNCGGFECMQIVFKEDN + DLTYIPADLEDIV" + gene complement(2431233..2431820) + /locus_tag="Ccel_2073" + CDS complement(2431233..2431820) + /locus_tag="Ccel_2073" + /inference="protein motif:PFAM:PF01464" + /note="PFAM: Lytic transglycosylase catalytic; + KEGG: cpr:CPR_1960 secreted protein" + /codon_start=1 + /transl_table=11 + /product="Lytic transglycosylase catalytic" + /protein_id="ACL76418.1" + /db_xref="InterPro:IPR008258" + /translation="MISLRKKKKGGFKILGVFIALIIVAAVGIFASRFFLEYLYPLEY + AEYVEKYSREYKLDNYMVYAVIKAESGFDSQAVSPRGAKGLMQIMDSTGEWAAEKAGI + DGFDKSMLLEPETNIKIGCWYLANLLKQFDNDTVLALAAYNAGSGNVTKWLKDPEKSH + DGKSLSNIPFPETENYVARIQKYYKMYKKLYDGNK" + gene complement(2431817..2432428) + /locus_tag="Ccel_2074" + CDS complement(2431817..2432428) + /locus_tag="Ccel_2074" + /inference="protein motif:TFAM:TIGR00152" + /note="TIGRFAM: dephospho-CoA kinase; + PFAM: Dephospho-CoA kinase; + KEGG: cth:Cthe_0885 dephospho-CoA kinase" + /codon_start=1 + /transl_table=11 + /product="dephospho-CoA kinase" + /protein_id="ACL76419.1" + /db_xref="InterPro:IPR001977" + /translation="MIQNRKSIVLGITGGIGSGKSTVSSILKELGAVVIDADVISREV + VEPGKRALEELTQEFGKDILDDWGQLNRKKLAARVFNDENKLGILNSIVHKYVAQIIK + ENVEEQLLKQTKVIVIDAPIPIKNGFLDLCDEVWTVFALMEKRVDRVMKRNSMTYEEA + VSRIRSQISDDEYLSIANTVINNNNDMSTLRKEVEGQFFRLLR" + gene complement(2432415..2435105) + /locus_tag="Ccel_2075" + CDS complement(2432415..2435105) + /locus_tag="Ccel_2075" + /inference="protein motif:TFAM:TIGR00593" + /note="KEGG: cth:Cthe_0886 DNA polymerase I; + TIGRFAM: DNA polymerase I; + PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; + 3'-5' exonuclease; + SMART: Helix-hairpin-helix domain protein class 2" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase I" + /protein_id="ACL76420.1" + /db_xref="InterPro:IPR001098" + /db_xref="InterPro:IPR002298" + /db_xref="InterPro:IPR002421" + /db_xref="InterPro:IPR002562" + /db_xref="InterPro:IPR008918" + /translation="MNSEDKILVVDGNSILNRAFYGLSRAAMLTTSEGLYTNAVFGFI + NILSKHLQDENPKYVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDA + MNIARVEVEGFEADDILGTVSSYAEKQGMKTILLTGDRDSLQLASNYTRIKLPVTRAN + KTETDEYDYEKVIEKYGVTPGQLIDVKGLMGDTSDNIPGVPGIGEKTALALIKKFNSL + EELYENIDKVDKKGVREKLENNKELAFMCKRLATIYRKVPGVENLNDFARLEIDKEKL + YSIFKRLEFKTLIEKFGLENTPFVEATEALKIEHVDVDSISELQSYISVIKLSGMVSV + YYHVDPAGSYLDDLCIFACNEEYAPANIIFSEKLTCETVVNELREIFESKDIEKYGHD + LKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTISELSEDKLKQSITPVEILYD + KHGKRLEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLVEVLAN + MELRGFKVDVENLKAYSKELDSRLVILENEIYMQAGETFNINSPKQLGVILFEKLGLP + VGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLMKLKSTYADGLLSVLEQDGKIHS + NFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFIPTNSDYVLLDADYSQIELRVL + AHITGDPNMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFS + LSKDIGVTKKEARKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNRRRYLPELKS + SNFNMRSFGERVAMNTPIQGSAADIIKISMVKVYTELKKRKLKSKLILQVHDELIVET + EKSELEEVSKLLKDCMENAVQLKVPLTVDVKHGDSWYDTK" + gene complement(2435121..2436275) + /locus_tag="Ccel_2076" + CDS complement(2435121..2436275) + /locus_tag="Ccel_2076" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0889 putative transmembrane + anti-sigma factor" + /codon_start=1 + /transl_table=11 + /product="putative transmembrane anti-sigma factor" + /protein_id="ACL76421.1" + /translation="MDFCKESTHYVSLYIDDMLEESTKREFEKHMNECDRCAEKVKEA + LALVELLRESDDIMLPQKFSSSLHNRLVEVAENQKENKGKLFIYNKKLIAGLSTAAVL + VVSLLAYSLLPQTPHNRQMTSISADITAPKEVKDSTKDANVSGKESTQESTQKSTQES + NTQTGDIYVTQPSSDKLAADNSSTTQHYTKKRVFEKKDENKALLKSSKSTKKTDEESK + EKTESVYKTKIAEQTISLQYFTNTAEMTLNSALDKENEDEALKGLMLELGGNELTSDD + ETIVIMTQKNYIDYVIPLDSFTKIQQLAYEKYNLELSIKLPVTKENITEQYKELEKQM + DELTEKINDMEIKGNDTLILEKERNNLSQKMDEIIKNNGMITIRIFFEDK" + gene complement(2436296..2436889) + /locus_tag="Ccel_2077" + CDS complement(2436296..2436889) + /locus_tag="Ccel_2077" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 + domain protein; Sigma-70 region 4 type 2; + KEGG: cth:Cthe_0890 ECF subfamily RNA polymerase sigma-24 + factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL76422.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MEKINENLLHKARNGDAGAFEELMVVYYSKVYNICYRMLNNTED + AYEQAQETFIKAFKYIKDFKGNCAIYTWLYRIATNVCLDYIRKNKKRKEVSIEQSTFE + DLQLKDSLVSDIPGPEKIAEDNARKQAIRTAMTKMNEKNRLVIILRDFMGLSYDEISE + IIKIPVGTVKSRISRARNELRELLCKDKEHLFTDYVK" + gene complement(2437671..2437940) + /locus_tag="Ccel_2078" + CDS complement(2437671..2437940) + /locus_tag="Ccel_2078" + /inference="protein motif:PFAM:PF07875" + /note="PFAM: Coat F domain protein; + KEGG: csc:Csac_2706 coat F domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Coat F domain protein" + /protein_id="ACL76423.1" + /db_xref="InterPro:IPR012851" + /translation="MAELTDKEIMASILNERKLAASSLTNLILESSNPTLRNDVKSIL + TRTFDEQKHIFDIMSQKGWYSVQNANQQEISQAQQKVKGIESQIG" + gene complement(2437953..2438150) + /locus_tag="Ccel_2079" + CDS complement(2437953..2438150) + /locus_tag="Ccel_2079" + /inference="similar to AA sequence:KEGG:Teth39_0443" + /note="KEGG: tpd:Teth39_0443 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76424.1" + /translation="MPLTSKELMLIQDNISMCESNIKYLQGCAQLANDSQIKNLCNQM + ASEEKNGLQLLIKHINTAGQQ" + gene 2438409..2439752 + /locus_tag="Ccel_2080" + CDS 2438409..2439752 + /locus_tag="Ccel_2080" + /inference="protein motif:TFAM:TIGR00933" + /note="TIGRFAM: potassium uptake protein, TrkH family; + PFAM: cation transporter; + KEGG: cbk:CLL_A1845 V-type sodium ATP synthase subunit J" + /codon_start=1 + /transl_table=11 + /product="potassium uptake protein, TrkH family" + /protein_id="ACL76425.1" + /db_xref="InterPro:IPR003445" + /db_xref="InterPro:IPR004772" + /translation="MLNIAPSKLLVLSFAVLILTGAILLSMPFSSRTGEWTPFINALF + TSTSASCITGLITYDTYTYWSTAGQIIILALIQVGALGIITLATFFSLLLKKKVGLKG + MLIAQESINSFRYDEVLKLVRRIVTTTLLVEFIGAIVLSLSFVPKFGAFGLYMSIFHS + ISAFCNAGFDITSGAVNGKFLSITPFNNDPIVIYTISGLIIFGGLGFTVWRDLYEFRK + NKALLFHTKLVLVITSILLIFGTLFFFANEYNNSKTLGPMSLFEKINAAFFQSTAART + AGFNSINLADMKEISKVFSVFLMFVGAAPGSTGGGIKVTTFGVIMFAVFSQIKGSGDV + VLFKRKLHQYTVNKALSITGLSATLVILITTVIVTLQSDLHVLDILYEATSAFGTVGL + TLGQTPSLNTVSKILIIMTMFLGRVGPLSFAVALTLKSSKRTSDIVYPEAKILVG" + gene complement(2439814..2441040) + /locus_tag="Ccel_2081" + CDS complement(2439814..2441040) + /locus_tag="Ccel_2081" + /inference="protein motif:TFAM:TIGR00234" + /note="TIGRFAM: tyrosyl-tRNA synthetase; + PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 + domain protein; + KEGG: cth:Cthe_0723 tyrosyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="tyrosyl-tRNA synthetase" + /protein_id="ACL76426.1" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR002305" + /db_xref="InterPro:IPR002307" + /db_xref="InterPro:IPR002942" + /translation="MSSVFDVLKERGFIAQITHEDEVKKLLGEKKVTFYIGFDPTADS + LHIGHFLQLMVMAHMQQAGHIPIVLIGGGTAMVGDPSGKNDMRKMMTREIIKHNADSF + KTQISKFIDFSDNKAFMVDNSEWLMELNYVQFLRDVGVHFSVNRMLTAECFKTRMEKG + LTFLEFNYMLMQSYDFLVLNRKYDCQLELGGDDQWSNILGGINLVRKSEAKEVYGMTF + KLLTTSEGKKMGKTENGAVWLDPEKTTPYEFYQYWRNIDDNDVENCLALMTFLPMDEV + RRLGSLKDAGINEAKAVLAYEVTKIVHGEDEAGKAKEAAEAIFGGKGKSDSIPFIEIN + SADLEAGIKIADLLMAAGLTPSKSEARRAIQQGGVLLNDNKITGFDYTVGTNDLVNGE + MMLQKGKKNFVKIKVV" + gene complement(2441368..2442024) + /locus_tag="Ccel_2082" + CDS complement(2441368..2442024) + /locus_tag="Ccel_2082" + /inference="protein motif:PFAM:PF02254" + /note="PFAM: TrkA-N domain protein; TrkA-C domain protein; + KEGG: csc:Csac_0150 TrkA domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="TrkA-N domain protein" + /protein_id="ACL76427.1" + /db_xref="InterPro:IPR003148" + /db_xref="InterPro:IPR006036" + /db_xref="InterPro:IPR006037" + /translation="MNIVIAGGGKVGFYLIKTLLPYKHKISVIEKQKELCEKIANQLN + VCVVNGDGTNIEHLTECNVEKADIFIAVTGKDEENLIACQLAKRNFGIKRTIARVNNP + KNITVFEKLGVDIAVSSTSIIADLIEQEVDYSGMKTLMKLKNGKVALSEILLSSSSPV + KNKKLKDIDIPKKCVLISVIREERVIIPNGNTTLLEGDYILAASSIQDQQELKDFFLG + " + gene complement(2442026..2442658) + /locus_tag="Ccel_2083" + CDS complement(2442026..2442658) + /locus_tag="Ccel_2083" + /inference="protein motif:PFAM:PF02254" + /note="PFAM: TrkA-N domain protein; + KEGG: csc:Csac_0151 TrkA domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="TrkA-N domain protein" + /protein_id="ACL76428.1" + /db_xref="InterPro:IPR003148" + /db_xref="InterPro:IPR006036" + /translation="MQVVIIGCGKVGAKFAQVLSEEGNEIVIVSNDPKSFKNLPPDFD + GVTLTGVPIDQDVLKMAGIENADVLVAVTEDDNINIMVCQMAKELFKVSKVIARIYNP + AREHVFHQFGLETICPTDITVNVMRAMLESNADVSTHRIGNTSVLFKHKKVLEGYIGK + RIDQVKLKKSMIFGIIRSGEFILANVAGRLAKGDILVVADTTHRTNKEIN" + gene 2442982..2443668 + /locus_tag="Ccel_2084" + CDS 2442982..2443668 + /locus_tag="Ccel_2084" + /inference="protein motif:PFAM:PF04239" + /note="PFAM: protein of unknown function DUF421; + KEGG: cth:Cthe_3175 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF421" + /protein_id="ACL76429.1" + /db_xref="InterPro:IPR007353" + /translation="MLVVFIRTLILYIVVITAMRIMGKRQIGQLQPFELAVAIMISEL + ASIPMQNTGIPLVNGIIPILTMLAAQILISFISLKSTRARTIICGRPSVLISGGRIME + QVFRKELYTLNDLLEQLRSKDIYNIADVEYAILETSGQLSVIPKAGKAKVIREDLNLS + GKYEAPAVEIIIDGDLIEKNLKLAKFSKSKLESELKKLNIQSTKDVFFACVGSDGQLF + CQKKEKTKRS" + gene 2443674..2444066 + /locus_tag="Ccel_2085" + CDS 2443674..2444066 + /locus_tag="Ccel_2085" + /inference="similar to AA sequence:KEGG:Cthe_3174" + /note="KEGG: cth:Cthe_3174 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76430.1" + /translation="MSNNAKIVTVVVSLVLVIIISGVLTLSYLNRSCEKLEKTVTSAG + LFIQSKQWDSAEKLLNDFESDWNKTKYSWAILLDHFEIDNIDNSYTKTKKYVESKDYP + SALAELEALKEYIKHIPKKESFSLENIM" + gene complement(2444069..2445076) + /locus_tag="Ccel_2086" + CDS complement(2444069..2445076) + /locus_tag="Ccel_2086" + /inference="protein motif:PFAM:PF01699" + /note="PFAM: sodium/calcium exchanger membrane region; + KEGG: cth:Cthe_3173 sodium/calcium exchanger membrane + region" + /codon_start=1 + /transl_table=11 + /product="sodium/calcium exchanger membrane region" + /protein_id="ACL76431.1" + /db_xref="InterPro:IPR004837" + /translation="MLDNILILLLSLGIILTGCELFTNGIEWLGKNLKLGDGVVGSIF + SAVGTCLPETLIPVIALLFSGKQKDSVDIGIGAIIGAPFMLSTLAFFITGLSVIIFAG + RRQTGLKLNTDLNILGRDIQFFVIVYTGAVFVSFVPVNFIKNISAILLIAAYVFYVFK + TVNNDKASNEDIDDLIFAKTFKFKESIMVIILQITLALFSIIIGAEMFVGNIKVVSGV + LGVSTLVLSIIITPIATELPEKFNSVIWISKSKDTLSLGNISGAMVFQSCIPFSIGIL + TTDWKLDIVTLISSMLALASTLVTYIWIKVKKNLTPLPLLSGGVFYAVFIGFLILRGF + K" + gene complement(2445207..2445283) + /locus_tag="Ccel_R0052" + /note="tRNA-Val4" + tRNA complement(2445207..2445283) + /locus_tag="Ccel_R0052" + /product="tRNA-Val" + gene complement(2445332..2446672) + /locus_tag="Ccel_2087" + CDS complement(2445332..2446672) + /locus_tag="Ccel_2087" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: cpy:Cphy_1907 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL76432.1" + /db_xref="InterPro:IPR011701" + /translation="MVFKFKRPRIYGNVSDDNYELSRRRFILEGCLSNGVYTLTAGAF + FAGYAKFLGASDQIIGLIVAMPLLANILQMFSPIFLEKLTSRKRLIVTTSLCYRSLLG + LMIVIPLLTQNTSARLLLLAGMYLTAYLIFSFSNPAGGSWIISLVPERYRGRYFGLRD + TFIISSAAVLSLSMGRVLDILKVSGKEFLGFIIVFSLVLVLVVLDIYVLNKIREPKIV + PIKQNVNVKSLFTLPLKNKQFRPVIFLNATWSFAAQLALPFFSVYMVTGLELSYTFIM + AANILMSVVQASTAKLWGRLADKFSWEVTTIISIGMLGLCHLTWAFVTKEVCYLIIPF + IQILAGAGWSGVNMSLFNIQFKHAPQEGRTIFVGFNAAIAGVTGFASALLGAFLVGVL + SNVKIDIGITVLNNMLIIFGISGTLVILCAVFFALKFWTKNKKRKNKSEKNFAG" + gene complement(2446753..2447532) + /locus_tag="Ccel_2088" + CDS complement(2446753..2447532) + /locus_tag="Ccel_2088" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hma:rrnAC2457 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76433.1" + /translation="MNNSSGVKTFFEYLPESIRFHKLKNEGLARFIFVLVLFCQLVGR + YALYKYTQLFPIEEIEKLYANFASFPSTSSADIYQPSIHILYAFLVALGISLLSKLVS + NLFLLVYMYSYLSEQRGKDCGFRASFSGVFRHTGRIILYNIVFGLLVVFGSMFFVIPG + IIAYVMFVFGFCYVLDLKLTMADAMTASSEVTKGKKVQIASILVAYFAIFKLPVLLLV + GNSTSGVFIGAFLTTVTNLILQRFITKIYMDLEYKVEVTHK" + gene complement(2447683..2448423) + /locus_tag="Ccel_2089" + CDS complement(2447683..2448423) + /locus_tag="Ccel_2089" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: NAD-dependent epimerase/dehydratase; + short-chain dehydrogenase/reductase SDR; KR domain + protein; + KEGG: aoe:Clos_2696 short-chain dehydrogenase/reductase + SDR" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL76434.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR002424" + /db_xref="InterPro:IPR013968" + /translation="MNTQKTVLVTGASRGIGYAVAKKFAKNGFNVAINYNLNSTSAES + LESELSREQCRVMTVKADVSSQEQVLNMIDSVNSRFGHIDILVNNAGIAGQRLFTDIT + SEEWDRMFDVNVKGMFHCCKAVLPNMIRNKYGKIVNISSIWGLTGASCEVHYSASKAA + VIGLTRALAKELGPSNIQVNCVAPGVIETDMNSEIDNQTMEELKEQTPLGVIGTGDDI + AETVFFLASDSAKFITGQIISPNGGFLI" + gene complement(2448465..2449043) + /locus_tag="Ccel_2090" + CDS complement(2448465..2449043) + /locus_tag="Ccel_2090" + /inference="protein motif:PFAM:PF01965" + /note="PFAM: ThiJ/PfpI domain protein; + KEGG: cbe:Cbei_3829 ThiJ/PfpI domain protein" + /codon_start=1 + /transl_table=11 + /product="ThiJ/PfpI domain protein" + /protein_id="ACL76435.1" + /db_xref="InterPro:IPR002818" + /translation="MNKILVFLYDDMADFEISYATHLLGHELSKEIVPCAYEKKPIKS + KGGLLYTPVITVAEAKADEYEGFLIPGGWNPVVKVEILDLINAFYSGGKLIAAICAGP + RYLAKAGILKDVKYTTSIVEWTQARREAFGNEDDPFPRENYIDTRVVRDKNVITSKGI + SFVDFAIEVADYFGMFKNSEDKKTLFNVNTDR" + gene complement(2449056..2449307) + /locus_tag="Ccel_2091" + CDS complement(2449056..2449307) + /locus_tag="Ccel_2091" + /inference="protein motif:PFAM:PF03692" + /note="PFAM: protein of unknown function UPF0153; + KEGG: mms:mma_2931 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0153" + /protein_id="ACL76436.1" + /db_xref="InterPro:IPR005358" + /translation="MECRKYCGACCIAPSISSPIPGMPKGKPAGVRCMQLKTDNSCRI + FGLPERPQVCSNLKPSEEMCGNSRQFALEYLLKLEQLTK" + gene complement(2449341..2449805) + /locus_tag="Ccel_2092" + CDS complement(2449341..2449805) + /locus_tag="Ccel_2092" + /inference="protein motif:PFAM:PF01928" + /note="PFAM: adenylate cyclase; + KEGG: cth:Cthe_2577 adenylate cyclase" + /codon_start=1 + /transl_table=11 + /product="adenylate cyclase" + /protein_id="ACL76437.1" + /db_xref="InterPro:IPR008172" + /translation="MSIEIEKKFLVKSNEYKAFAKPVLFRQGYLSTSFERTVRVRRYD + DKGFITIKGKTNNCSRLEYEYCIPIEDADNMLYNLCVQPIIEKIRYFLVYKGYEWIVD + EFLGVNEGLVVAEIELKDEKECFGKPDWLGSEITSDTRYYNSNLVNNPYKTW" + gene complement(2449935..2450378) + /locus_tag="Ccel_2093" + CDS complement(2449935..2450378) + /locus_tag="Ccel_2093" + /inference="protein motif:PFAM:PF02637" + /note="PFAM: GatB/Yqey domain protein; + KEGG: cth:Cthe_1347 GatB/YqeY" + /codon_start=1 + /transl_table=11 + /product="GatB/Yqey domain protein" + /protein_id="ACL76438.1" + /db_xref="InterPro:IPR003789" + /translation="MSLKELLVQDLKKAMKDGDSVSKTAIQMARSAVLQVEKDTRVTL + DDDGIVEIIAKEVKKRVDTLPDFEKSNRQDLIDNLKAEIEVLKKYLPQQLSEGEIEEI + VKEAISSTGATSAKEIGKVMQAVMPKTRGKADGKLVNQIVKKLLE" + gene complement(2450420..2450596) + /locus_tag="Ccel_2094" + CDS complement(2450420..2450596) + /locus_tag="Ccel_2094" + /inference="protein motif:PFAM:PF01165" + /note="PFAM: ribosomal protein S21; + KEGG: cth:Cthe_1348 SSU ribosomal protein S21P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein S21" + /protein_id="ACL76439.1" + /db_xref="InterPro:IPR001911" + /translation="MSEVRVKENESLDSALKRFKRSCAKSGVLAEVRKREHYEKPSVK + RKKKSEAARKRKFK" + gene complement(2450803..2451147) + /locus_tag="Ccel_2095" + CDS complement(2450803..2451147) + /locus_tag="Ccel_2095" + /inference="protein motif:PFAM:PF01230" + /note="PFAM: histidine triad (HIT) protein; + KEGG: cth:Cthe_1369 histidine triad (HIT) protein" + /codon_start=1 + /transl_table=11 + /product="histidine triad (HIT) protein" + /protein_id="ACL76440.1" + /db_xref="InterPro:IPR001310" + /translation="MNDCIFCKIINGEIPSKKVYETDKVYAFHDINPEAPVHVLIVPK + EHIASHNELSSENVDVMKDIHLAANEIARKLGISESGYRLINNCGADAGQTVFHLHYH + LAGGTAMGSKIL" + gene complement(2451176..2453815) + /locus_tag="Ccel_2096" + CDS complement(2451176..2453815) + /locus_tag="Ccel_2096" + /inference="protein motif:TFAM:TIGR00344" + /note="TIGRFAM: alanyl-tRNA synthetase; + PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase + DHHA1; Threonyl/alanyl tRNA synthetase SAD; + KEGG: cth:Cthe_3200 alanyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="alanyl-tRNA synthetase" + /protein_id="ACL76441.1" + /db_xref="InterPro:IPR002318" + /db_xref="InterPro:IPR003156" + /db_xref="InterPro:IPR012947" + /translation="MQKLGLNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSG + MAPLKPFFTGQEEPPRKRVTTCQKCIRTPDIENVGKTARHGTYFEMLGNFSFGDYFKN + EAIPWAWEFVTKDLEMPVDKLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWE + HGIGPCGPCSEIYFDRGPEKGCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRL + AHPNIDTGMGLERLACISQDVDNLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVV + TDHIRSTTMMVCDGVLPSNEGRGYVLRRLLRRAARHGRLLGINKPFLYDVAMVVINES + KEAYPELAEKADYIKKVIKIEEERFEATVDQGIIILNEFIDEIKAEKQNVIPGEMVFK + LHDTYGFPLDLTREIAEENGLGIDEEGFKREMDAQRKKARDAHNSKDTSAWSDSVYDK + LDKSQKTAFVGYENTASDSVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVG + DTGILTAQNGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNH + TVTHLLHKALRTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILS + SMNVNIKEMSIDEAKKLGALALFGEKYGNTVRVVKVEDYSIELCGGTHLNNTAQAGLV + KILGESGVAAGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQE + LKNAEKEIEQLRNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNK + LGSGVVVLGSGYGEKVSFIVTATKDVVAKGIHSGNIIKEVAKTAGGGGGGRPDMAQAG + GKDLSKIDEALKTAASIVESQIK" + gene complement(2454156..2454821) + /locus_tag="Ccel_2097" + CDS complement(2454156..2454821) + /locus_tag="Ccel_2097" + /inference="protein motif:TFAM:TIGR01509" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, + variant 3; HAD-superfamily hydrolase, subfamily IA, + variant 1; + PFAM: Haloacid dehalogenase domain protein hydrolase; + KEGG: sfu:Sfum_3382 HAD-superfamily hydrolase, subfamily + IA, variant 1" + /codon_start=1 + /transl_table=11 + /product="HAD-superfamily hydrolase, subfamily IA, variant + 3" + /protein_id="ACL76442.1" + /db_xref="InterPro:IPR005833" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006402" + /db_xref="InterPro:IPR006439" + /translation="MKYTTVLFDLDGTLINSLEDLAESANEALTKHGFKAHPLEAYKK + FVGNGVRNLIKSATPDGTEDSVVDMILEDYRKIYNKNYVNKTRVYAGIHEMLENLKKV + GVKMGVCSNKPHKPTNEIVEKLLGNKYFDVVFGEREGIPRKPDPASLIEAAEKLGVVP + SQTIYVGDSGGDMESANRAGMLAVGVLWGFREQDELKSCGGKILIASPSELVDFVTGD + NRG" + gene 2455014..2456216 + /locus_tag="Ccel_2098" + CDS 2455014..2456216 + /locus_tag="Ccel_2098" + /inference="protein motif:TFAM:TIGR00120" + /note="TIGRFAM: arginine biosynthesis bifunctional protein + ArgJ; + PFAM: arginine biosynthesis protein ArgJ; + KEGG: cth:Cthe_0081 N-acetylglutamate synthase / glutamate + N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="arginine biosynthesis bifunctional protein ArgJ" + /protein_id="ACL76443.1" + /db_xref="InterPro:IPR002813" + /translation="MNIIDGGVTAPKGFKAAGVACGIKKNNRKDLAIVCSEDTAVASG + VFTTNVVKGHSLQVSMEHIKNGFARAIVINSGNANACVGETGYKDAKEMAELTAELLQ + CDAQDILVNSTGVIGTKLNMPSVRSGIRSAVNALSSEGGSDAEEAIMTTDLMPKEIAV + DIELQGETIRIGGIAKGSGMIHPNMATMISIITTDANISRSLLDKALKQCVKKTFNRV + SVDGDTSVCDSVFVLANGFADNDAIVKEDYEYSKFVDAMMFVCTYLARLVAKDGEGAT + KLIEIKVDGASDESDAYKVVSTVAKSPLVKTTIFGEDANWGRIFTAVGYSGASFDPNL + TDIYIGDILVCRNGSAANFDEAAVKEIMKKKEIVIKINLKKGKVSDRIWTCDFSYDYV + KINGSYRS" + gene 2456288..2456707 + /locus_tag="Ccel_2099" + CDS 2456288..2456707 + /locus_tag="Ccel_2099" + /inference="protein motif:PFAM:PF01584" + /note="PFAM: CheW domain protein; + KEGG: tpd:Teth39_1010 CheW protein" + /codon_start=1 + /transl_table=11 + /product="CheW protein" + /protein_id="ACL76444.1" + /db_xref="InterPro:IPR002545" + /translation="MSTQLVLFKVNNEIFAISINNVNIIERITDIYKVPDTPEYIDGL + INLRGKVHTVFNLRKKFGYSPKESDDNTRIIILNHQSNVGLLVDEVMEIFSAEDSEVK + PAPELISGISGKFFSGVIERDGRIVLILDLEKLFEVK" + gene complement(2456773..2458803) + /locus_tag="Ccel_2100" + CDS complement(2456773..2458803) + /locus_tag="Ccel_2100" + /inference="protein motif:PFAM:PF00672" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cbe:Cbei_1428 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76445.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /translation="MSVTKICRKIKNTNIRLRIQLLIVLITVTLIPIIAVSTTTYITT + IGKITELSLNNLKSDSYNTMSNIELKIKSLDSTIKGVASQTDFLVGLEMANSVNEKMD + TVTYSGIQLSMKNVVEGSEGLIQTMYLCNKRGKVIATAAKRTKTAGVDDFYNMQLFES + IKKDANNEVIVGNSIILKGANKKVIPVTRAVKSLAGFSGTITALVDYEKFFKFGKNQI + ESEIIILDSGLKAFYGKDNNEINSKIPIKEAVDDENITYMDSGTKKIAHLYKSDLTNW + IVCAQMDYSKVMLPVKQYILILIIVLVLSLLLAAFISIFYSKYISSPVVELTRQIKKV + EDGFLEVHFEKRSNISEINSLTTAFENMVRNLNILISGISSASKEIDEMSALMYSEAS + ESFEKSEFTQKSISNINVNIKDQADNTSNATVEIKSLAEQIATTREHSNNVYNFLDRL + NNSAKRGKSQMDKLEANSTLNLQSISKMNEMIIGLQTQMKQINTITAAIQSVAKQTQL + LSLNARIEASRAGESGKGFAVVADEIKELSIQTNSQAGVIRNMIESIVQNSNNLTKGF + EEVSKGTDSQNSCINETKDCFLEIKKNIDNINSRLFNITDYLQEMDKQKDNLVLLVNQ + INNAAVEIAHSSDHVHEYTKNHIISVKKVHEKSNIFKSLSQKLNSSVGLFKV" + gene complement(2458887..2459828) + /locus_tag="Ccel_2101" + CDS complement(2458887..2459828) + /locus_tag="Ccel_2101" + /inference="protein motif:TFAM:TIGR02136" + /note="TIGRFAM: phosphate binding protein; + KEGG: aoe:Clos_1116 phosphate binding protein" + /codon_start=1 + /transl_table=11 + /product="phosphate binding protein" + /protein_id="ACL76446.1" + /db_xref="InterPro:IPR011862" + /translation="MAKLVNKKRIVSLVLGVALTVSLTACGDNTKSNQDVSTKLTGKI + VIDGSSTVYPVSSAVAEEFQNEQPDVEVSVAMSGTGGGMKKFAAGEIDICDASRKIKP + EEAEAAKAKGIDFVELEVAYDGISVVVNKDNTWAESITVDELNKIWGKDSKVKTWKEV + NPAWPDEPLKLYGPGTDSGTFEFFTEVINKKAKESRTDYTPSEDDNVLVQGIAGDKDA + MGYFGFAYYEENQDSLRVLKIDSGKGPIEPNLETIKNNTYSPLSRPLYIYVNKNKINQ + SPVKEFIEFYLDNAGDLAKEVGYVPLESYDAEKAKLK" + gene complement(2459973..2460827) + /locus_tag="Ccel_2102" + CDS complement(2459973..2460827) + /locus_tag="Ccel_2102" + /inference="protein motif:TFAM:TIGR00974" + /note="TIGRFAM: phosphate ABC transporter, inner membrane + subunit PstA; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: gtn:GTNG_2395 phosphate ABC transporter" + /codon_start=1 + /transl_table=11 + /product="phosphate ABC transporter, inner membrane + subunit PstA" + /protein_id="ACL76447.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR005672" + /translation="MNQIKYRKMKNSIFHGVIFCVTLIGIVVLVILLADIIMRGVPYL + TKNFFTSFPSRFPKKAGILPGIYGSVYIILLTILFAVPIGLGTAVYLEEYAKNNRFTK + FIKINISNLSGTPSIVYGLLGLTVFVKTLGLGKSIVAGALTMSLVVLPIVIVSSQEAI + KAVPQYLRHGSYALGATKWQTIRKIVIPTALPGIFTGVILSVSRALGETAPLIMVGAA + TYVSKLPEGLNSIFTALPLQIYYWMGLPKEQFKDLAAAGIIVLLAILLTTNAITIVLR + NKYQKSVE" + gene complement(2460853..2461785) + /locus_tag="Ccel_2103" + CDS complement(2460853..2461785) + /locus_tag="Ccel_2103" + /inference="protein motif:TFAM:TIGR02138" + /note="TIGRFAM: phosphate ABC transporter, inner membrane + subunit PstC; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: aoe:Clos_1117 phosphate ABC transporter, inner + membrane subunit PstC" + /codon_start=1 + /transl_table=11 + /product="phosphate ABC transporter, inner membrane + subunit PstC" + /protein_id="ACL76448.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR011864" + /translation="MTDITSTFRNKKAVNSRIKRMRISNVIARNILFLFAIITILTTV + GIIVSLLKDSIGFFSKVSITDFLFGTKWTPLFSSPSFGVLPLVTGTLIITLTSAVISI + PVGLFTAIYLSEYANKRVRKIIKPILEVLAGIPSIVFGYFALTLITPVLKSFIPQTEI + FNALSASIAVGIMTIPLVSSLSEDALRAVPDSLRQGALALGSTKMETSMKVVVPAAIS + GISASFVLAISRAIGETMIVTIAAGARPNLTFNPLESVQTMTSFIVQASQGDNPHGTV + GYYSLFAVGLLLFLITLGLNIFSHRIVEKYRKEY" + gene 2462064..2462822 + /locus_tag="Ccel_2104" + CDS 2462064..2462822 + /locus_tag="Ccel_2104" + /inference="protein motif:TFAM:TIGR00972" + /note="KEGG: cbf:CLI_2585 phosphate ABC transporter, + ATP-binding protein; + TIGRFAM: phosphate ABC transporter, ATPase subunit; + PFAM: ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="phosphate ABC transporter, ATPase subunit" + /protein_id="ACL76449.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005670" + /db_xref="InterPro:IPR017871" + /translation="MTNGYKIVTKNLNLFYGDMQALKNVSLEIPGNKVTAFIGPSGCG + KSTFLKTLNRMNDLVASVKITGDVYFDGLNVYKEYDIVELRKNIGMVFQKPNPFPMSI + YDNVAYGPRIHGIKSKSKLDEIVEKSLRDSALWDEIKDRLKQNALGLSGGQQQRLCIA + RVLAVEPEVVLMDEPTSALDPISTLKIEDLIQELKQNYTIVIVTHNMQQAARISDLTA + FFLHGEVVEFGNTNELFSTPRDKRTEDYITGRFG" + gene 2462835..2463500 + /locus_tag="Ccel_2105" + CDS 2462835..2463500 + /locus_tag="Ccel_2105" + /inference="protein motif:TFAM:TIGR02135" + /note="TIGRFAM: phosphate transport system regulatory + protein PhoU; + PFAM: PhoU family protein; + KEGG: csc:Csac_2029 phosphate uptake regulator, PhoU" + /codon_start=1 + /transl_table=11 + /product="phosphate uptake regulator, PhoU" + /protein_id="ACL76450.1" + /db_xref="InterPro:IPR008170" + /translation="MVRNSFDKELEHLHGLMLKMSSIVEESIENSVLAFKKQDVSLAK + QVFENDDAIDDMESRIEKICINLIARQQPLAKDLRAISTALKIITDLERIGDQAADIA + ELTIRIGDSKQVKPLIDIPHMADMAKKMVTKSIDSYVKQDINLAKEVCDSDDAIDNLF + SKIVLELINIMKNNPSTVEQATDYMFVVKYLERIGDHATNIAEWVVFNVTGSHDHLAR + KNE" + gene 2463535..2464251 + /locus_tag="Ccel_2106" + CDS 2463535..2464251 + /locus_tag="Ccel_2106" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cth:Cthe_1394 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76451.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MSKQLIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSS + GKVPDLFILDIMLPGIDGLEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADD + YITKPFSVRELIARVKALFRRVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPL + KEFELLKMLVLNKGKVLSREHLLDKIWGFDYYGETRTVDVHIRYLRQKIEDNDDNPTY + IETVRGIGYRFTDKNPDPAN" + gene 2464294..2466090 + /locus_tag="Ccel_2107" + CDS 2464294..2466090 + /locus_tag="Ccel_2107" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cth:Cthe_1393 multi-sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76452.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MKKKIIQYSVMLVIIGITIAGIFTSAMARYFYKQEVQNNIESIA + VLLKNDVLEEISVKSELDFNKFVKDYASLLNSRSNKDKNFPLATRITIIDFEGKVLGD + SDSNIDTMENHLNRKEIHEAIQGQSGTDQRFSATMQMPYLYVALPINEHRIIVRISVP + LYQLNAINKAFIYYTLLGILAGLLLTLLISFKLSSFITKPIQHLINTSKEIAGGNYKK + RIDVNYKDEIGQLAITFNEMADKLDETLSGIMDKNVKIDTVINSMMNGIIAIDNNSKI + IIINTTACDIFGVQYGPGIIGKNLIDITRNSKVNSLLRQTIRNDISLIDEIVIFSPSL + GIDKIYRIYTNTIKSSDTRQQTAGAVITLNDITSVRKLEQIRTEFVSNVTHELKTPLT + SIRGFVETLKNGAIEDTTVAVKFLDIIDIEAERLYMLINDTLQLSEIEAMRKDDSVMK + IDLIQIIDEVVLILKSSADKKNIALEVLANSAEVPVIANRNRIKQMLINLIDNAIKYN + VENGKIYIKSEKANGNTVISVKDTGIGIPEKHHSRIFERFYRVDKGRSRNMGGTGLGL + SIVKHIVNLYSGDINIISEPGKGTEFIVKLPL" + gene complement(2466252..2466716) + /locus_tag="Ccel_2108" + CDS complement(2466252..2466716) + /locus_tag="Ccel_2108" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76453.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene complement(2466969..2469404) + /locus_tag="Ccel_2109" + CDS complement(2466969..2469404) + /locus_tag="Ccel_2109" + /inference="protein motif:PFAM:PF06165" + /note="PFAM: putative carbohydrate binding; + glycosyltransferase 36; glycosyltransferase 36 associated; + KEGG: cth:Cthe_0275 cellobiose phosphorylase" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase 36" + /protein_id="ACL76454.1" + /db_xref="InterPro:IPR009342" + /db_xref="InterPro:IPR010383" + /db_xref="InterPro:IPR010403" + /translation="MKYGFFDDTNREYVITTPKTPYPWINYLGTQEFFSLISNTAGGY + CFYKDARLRRITRYRYNNVPIDMGGRYFYINDNGVLWSPGWSPVKADLDKYECRHGLG + YTKITGSKNGISTEVLYFVPLNFNGEIHRVRVKNTTSDNKSVKLFSCIEFCLWNAYDD + MTNYQRNLSTGEVEVENSVIYHKTEYKERRNHFSFYSVNADLTGFDTDRDEFIGLYNG + FDAPQVPVSGEPKNTIAHGWSPMASHCITVDLKAGEEKELDFILGYVENDVNEKWESK + GVINKKKAYKMIEEKGNPAGVQTAFDELQNYWSQLFTQYKLEHKDEKLSRMVNIWNQY + QCMVTFNMSRSASYFETGIGRGMGFRDSNQDILGFVHQIPDRARERILDIAATQLENG + GAYHQYQPLTKKGNNEIGGNFNDDPVWLIASVAAYIKETGDMDILKENVPFDNDDTKA + ASLFEHLRRSFYHVVNNLGPHGLPLIGRADWNDCLNLNCFSETPDESFQTTTSKDGKV + AESVLIAGMFVYYGPEYVKLCELNGLEDEAAKAQVEIDKMIKTVKEYGWDGEWFIRAY + DDNSEKIGSNENEEGKIFIESQGFCSMAEIGLEDGYVEKALDSARKYLDTPYGLVLQN + PAFTKYYVNMGEISTYPAGYKENAGIFCHNNPWIIAGETVLGRGDRAFEYYSKIAPAY + TEEISDIHKTEPYVYSQMIAGKDAKRPGEAKNSWLTGTAAWNFVVISQNILGIKPDYS + GLKIDPCIPASWDGYKITRKFRNAVFEIVISNPEHVSKGVKKVVVDGKEIGGNIIPIF + NDEKTHQVEVIMG" + gene complement(2470139..2470966) + /locus_tag="Ccel_2110" + CDS complement(2470139..2470966) + /locus_tag="Ccel_2110" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: rfr:Rfer_1101 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76455.1" + /db_xref="InterPro:IPR000515" + /translation="MEQSNRVYSFIMYIFLAVCSVIAIGPFYLMIIMSTYDSNALFSD + LHLLPGNNFMINLKDVFLNAGFGRFYFNSIYIAVLSTALTVFVCAMCGYALAKFDFKL + KKTAYYAILITMMLPTQLGLIAFVTEMNVIGWTDSHLSLIIPAAANAFAVYWIRQYTV + QGVPTEILESGRMDGCTEGGIFFKLVIPFIKPALGSQALLCFMAAWNSYLLPLVLISD + PKKYTVTLGLSTLDALYRANYGARIAALVIGTIPMFCIFLVFSKSLIQGITAGSVKG" + gene complement(2470953..2471873) + /locus_tag="Ccel_2111" + CDS complement(2470953..2471873) + /locus_tag="Ccel_2111" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: bcl:ABC3214 sugar ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76456.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR000589" + /translation="MKNLSKKSAPYLFMAPYFLLFLTFSLIPIIFTLYMSLNEWNGYE + GIKFVGLANYQRMFENGEFLLALKNTAIIMLLLIPLQLIFAVIIAYMINSKLVRHKEI + FKTAVFTPYLVIPIAAGLLWAFFFDGGSSGTINAILMKLHILKEPVDYLASPKLAKVV + IAVIMLWRYTGYCVLFFIAGFVSVPEELYEAARVDGARAWHNFWNISLPMIKPIIIYM + VITSLIGGFQTFDEPNIIYTQGNYQTGPYSGGPDGAVLTLVMLMGKGAFQNSQYGYGS + AVAYGMFVVIAIFSFASLKFMNRGDKDGAI" + gene complement(2471980..2473329) + /locus_tag="Ccel_2112" + CDS complement(2471980..2473329) + /locus_tag="Ccel_2112" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: ace:Acel_0130 extracellular solute-binding protein, + family 1" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL76457.1" + /db_xref="InterPro:IPR006059" + /translation="MFKKVIASVLTGVMVLGMAACGNTESGDSTASASSSAASSSSVA + STSSPAATSTDFTKASGTVVMWNWENQDQLKTAIADFNTRYPNVKVESVPVASADYVK + KIQTAVAAKTALPDVIRGEVGFRGTLFDMDICEDLSQAPYNFDKTKLAEKSLPLVTND + KGQVLGAPTQFNPSGIAYRRSMTKKLFNTDDPKELADKFKTWEDVIAAFQNAKIDGKK + VYAFRSVRDIFHIVDGYNPQNPIQDGTIKFNEVYLPTFQVIEKMWKAGVINKYDMWTP + AWNASFAKSEDVFAAAAPWFLKYVIEPNDEKGKGDWGVTVAPGGMFNWGGTALSIWKD + SKVKDAAWGYIADQILNENGVKNSFTTGMNITPVKEFIDKPGFFSQKEEYWGGQDVGQ + FYMDNMDAVKVKSLGKYDNFLENNFVKGLLEIKKGKTAQEAVDFMIADMKKNVPELK" + gene complement(2473665..2475281) + /locus_tag="Ccel_2113" + CDS complement(2473665..2475281) + /locus_tag="Ccel_2113" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: csc:Csac_0684 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL76458.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYKVLIIDDESIIRKGIKNIINWKQLDCEVCADASDGIEGIELI + KKYVPEVIITDIRMPGMDGLEMIKNVKEIVPNSKIIILTGYRDFDYVQKAIKCGAYDF + LLKPSKIEELTSVLTNAVRELDEQKNKYNEIERFRMLFEQNIPVLREKLLYDIIYGIN + TSENEIYEKMKLFDISIKNFVLVVMENDYNDKSNSSLYDKHLYQFGIVKSFEEIFAEN + YEVLSIMLNSNRVGFIIQKSDNLPLDIEKVSEKCAYLQEVINSGFGFTVTIAVSSNGK + EALELPEKLKECLGSLEYKSYMGDNSIIQYSDLNSFFRYEDYSILDKYQKQLIENIKS + GNELGVKENTKLISDYLTNNNINIHYMRNFYYTTLSSINNIRISVSSVDTEKKYSEGE + DIASLIKLIEKTDKAEELNSLLEEVAVRIASKVNSFNNKSIKLILRKAIDYIQEHYNE + QVTLNEVAENIYVSTFYISRMFKKELGKSFVDYLNDVRIDKAKELLKDVRYKTYEVAE + KVGISDPHYFSKLFKKYSGMTPSEYRDSCY" + gene complement(2475259..2477142) + /locus_tag="Ccel_2114" + CDS complement(2475259..2477142) + /locus_tag="Ccel_2114" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: csc:Csac_0683 histidine kinase internal region" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL76459.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MINKITSSMFSKMLRSLQFYKNISIKKKLLLVVNLQILIPLIFV + GFFAYKSSEEIINSKSLSYSNDVLSSIGLRLQDTVTNLTNISGDISMDKNIYDALISY + DIGNNNNNLTETGIREIDSQLTNLFITVKGNRPEINSICIITDSGLVLPRRFPSTDSE + LRSVVNREYSRMSEKADEVSRKAAWFFETSSGIVKNAYLVKKVYNRDNYTEIGMLVVQ + IKMDSLRDVLKGLESEVMQNTTILSPNNDIIVSKNKSALEKYKTIIKDTPYDQDSFID + QDNNIFVAYTYLKDNINWRIVSFVPLDELYSDVNKLRNKIILLCFGSIVLLSVVSIYM + SFDMIKPINRLVKAMKNMNINNVSDSYIEIDRGDELGFLHKTFNNMAKEIDHLVTWIY + REQITRKEAELKALQSQINPHFLFNTLESINWMAQLNNVPEISNIVTDLSALLEASIG + RDDRLIPIEEEFMYIDKYISLLKRRFEDKITLKKEIDPQVLYIKIPRLLIQPLIENAV + YHGVESSREKGVIMLNARIQGDTILLEVIDNGNGISKEDLLKLNKSLEMDNDTYFKSL + REKKNKSIGIDNVNRRIKLFYGEKYGIKIESSINIFTKVTVCLPLQTFNTKESYYVQG + SNN" + gene complement(2477197..2478495) + /locus_tag="Ccel_2115" + CDS complement(2477197..2478495) + /locus_tag="Ccel_2115" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: csc:Csac_0682 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL76460.1" + /db_xref="InterPro:IPR006059" + /translation="MQSLKKLLCLVLFTLVSIISVSCSSDNSYVSNARNSKTTQAETS + TISLMTSWGGVDSKAGCLMDLLDRFENGNPSIKVSNQSIFGDEYLPTLKTRFASGNEP + DVFGLWPCSDIKYMIMANKLADLTDMLTKDSEWMDSFKGNYFDLTTYNNRIYGIPFEL + VFEGMFINKDLFQQFNVKIPQNYEELKNAINIFNKHNITPIAYNATAEGSYIYQNMIA + SLGGNDGVENYMVNNQINKCYIDAMKYMKELHKMHAFPTDLISITSEERNNLFIKKQA + AMIVQGSWFAAYFGKFDKTVEMIPFPSMGNGNRKIPAGLGGGTFYISKSAWGTPNSKE + NTVKLLKFLTSKETSDYLYKESGLFSTLNISRETPFNALAKQSIDIYENTPEQDRCAI + PDHVIDRSTWEKIIVKEFPDYLDDKISAEQIWEKALDKLQ" + gene complement(2478696..2481041) + /locus_tag="Ccel_2116" + CDS complement(2478696..2481041) + /locus_tag="Ccel_2116" + /inference="protein motif:PFAM:PF07724" + /note="PFAM: AAA ATPase central domain protein; ATPase + associated with various cellular activities AAA_5; ATPase + AAA-2 domain protein; + SMART: AAA ATPase; + KEGG: cth:Cthe_0312 ATPase AAA-2" + /codon_start=1 + /transl_table=11 + /product="ATPase AAA-2 domain protein" + /protein_id="ACL76461.1" + /db_xref="InterPro:IPR001270" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR011704" + /db_xref="InterPro:IPR013093" + /translation="MIKCSICNKNIAVVFVTKIIDGKQIQEGLCVSCAKKQNLQPIDQ + LLSQTGMTEYELENISKQVGDMLEEMDGSEIMEAMQVDPENINQANPFFSILNKAFPK + TGDSELNNSNKNIQPVGQDKNGEDKDRNYTKTKAQDKKNVKKKKYLEMYGTNLIDKAK + EGSIDNIIGRTREIERVIQILNRRTKNNPVLIGEPGVGKTAIAEGLALRIAERSVPAK + IQNSEVYLLDMTSVVAGTQFRGQFESRMKGIIDEAKSFGNIILVIDELHNIMGAGEAE + GAMNAANILKPALSRGEIQVIGATTLNEYRKHIEKDTALERRFQPIIVDEPSIEESIE + ILRGIKHYYEQYHRVKINDEIVKAAVNYSERYITDRLLPDKAIDVIDEAGSRANLRNT + KLAELQSYKDELKKVQEEKEFAVSADSIEDYQKAADLKVYECKLQELIKDIEDTSKDV + ELTVEDIAAVIEAWTKIPIQRLSEGESEKLMSLESRIHQRVIGQEKAVEGVAKAIRRS + RSGFKKKKKPSSFIFVGPTGVGKTELVRALSTELFGSEEALIRLDMSEYMEKHTVSKL + IGSPPGYVGYDDAGQLTEKVRRRPYSVILLDEIEKAHPDVFNMLLQILEDGRLTDSHG + KTVNFENTIIIMTSNAGTNFKSGGIGFANNTYIALESRVRDVIKETFRPEFLNRIDEI + IVFTELGTDELKKIIDLMLEEVYQEASEKDIRVNVSDKVKEFILEKGYDPKFGARPLR + RTVQNYIEDRLSEEYLKGTMKEGSLVGIDIDENNEVVLKIV" + gene complement(2481348..2482346) + /locus_tag="Ccel_2117" + CDS complement(2481348..2482346) + /locus_tag="Ccel_2117" + /inference="protein motif:PFAM:PF01384" + /note="PFAM: phosphate transporter; + KEGG: csc:Csac_2032 phosphate transporter" + /codon_start=1 + /transl_table=11 + /product="phosphate transporter" + /protein_id="ACL76462.1" + /db_xref="InterPro:IPR001204" + /translation="MLSVSLVIVVVLALGFDFINGFHDTANSIATSVSTRVLSPRQAI + LMSAILNFVGALMSSKVAHTITNGLVDNTMIKVQYVIIATLIASIIWDLITWYFGIPS + SSSHALIGALVGSSIAYSGGLSIVKWKGVLEKVVIPLVTSPVIGFVIGFFFMKFLYKV + LRPFSQRFVNKWFSKFQILSAALMAYSHGNNDAQKSMGIITLALIGANMNNGHTEVQT + WVMLACAISMALGTSIGGWKIIKTIGVNMIRLQPIGGFAAETGAAIVIETMTHFGAPV + STTHVISTSIMGVGASKRFSAVKWALARNIVYAWIVTIPISAIIGAFITTIFKFFA" + gene complement(2482339..2482962) + /locus_tag="Ccel_2118" + CDS complement(2482339..2482962) + /locus_tag="Ccel_2118" + /inference="protein motif:PFAM:PF01865" + /note="PFAM: protein of unknown function DUF47; + KEGG: ckl:CKL_1353 pit accessory protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF47" + /protein_id="ACL76463.1" + /db_xref="InterPro:IPR002727" + /translation="MFRITPKEEKFFDYFIETCEIICKAASLLEDLTTNYVNVNEKIS + NIEETEHACDSNVHKILNELNQSFITPIDREDIFTIAKELDNITDDIETAAHRFSMYN + VKAVKPDAVTLTKLIVRATGELKNVMIEMKNMKKSKKLKEKIIEVNNVEDEADTIFRD + AMANLFITENDAVEVIKWKEIYELLENTIDACEDVANIVEGVVMKNA" + gene complement(2483235..2486063) + /locus_tag="Ccel_2119" + CDS complement(2483235..2486063) + /locus_tag="Ccel_2119" + /inference="protein motif:TFAM:TIGR00630" + /note="KEGG: cth:Cthe_0311 excinuclease ABC subunit A; + TIGRFAM: excinuclease ABC, A subunit; + PFAM: ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="excinuclease ABC, A subunit" + /protein_id="ACL76464.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004602" + /db_xref="InterPro:IPR017871" + /translation="MIRDNIFIKGAREHNLKNVDVEIPRDKFVVITGLSGSGKSSLAF + DTIYAEGQRRYVESLSSYARQFLGQMDKPDVDYIEGLSPAISIDQKTTTRNPRSTVGT + VTEIHDYLRLLYSRIGIPHCPKCGKEIAQQTIDQMVDQIVSFEEGTRIQLLAPVVRGR + KGEYHKLIENAKKDGFVRLRVDGQIVDVNEEIKLDKNKKHNIEIVVDRLVVRGDIQKR + LVDSLETVLRLSGGIVIVDLVGKEEILFSQNFACSDCGISIEELVPRMFSFNNPFGAC + QTCTGLGNLMKVDPELVIPDRSLSLTNGAISVTGWNIGSEDAYIRMIFNALAKHYKFD + LDTPFNKLSGEIIDIILYGTRGEKIKVDYEREYGSGSYMAGFEGVINAIERRHNETQS + ESSKQYYEQFMSNNPCPDCKGARLKPESLAVTVGGKNIHKVSSMSVADTKDFFDNIEL + SERDKMIANQILKEIAARIGFLVDVGLDYLTLSRPAGTLSGGEAQRIRLATQIGSGLM + GVLYILDEPSIGLHQRDNEKLLKTLNRLRNLGNTLIVVEHDEDTMNAADHIIDMGPGA + GIHGGHVVAEGTLDKILKSEKSLTGQYLSGRKKIEVPEIRRKPNGKWLEIVGARQNNL + KNINAKIPLGVLTSVTGVSGSGKSTLINEILYTSLASQLYRAKARPGNHDTIKGIKNI + DKVISIDQSPIGKTPRSNPATYTGVFDLIREVFASTTEAKMKGYKNGRFSFNIKGGRC + EACSGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKSISDVLNMTIDDALE + FFKNIPKIQRKFQTLYDVGLGYVKVGQPSTTLSGGEAQRVKLATELSKRSTGKTLYIL + DEPTTGLHVADVHRLIDILQRLVDAGNSIVVIEHNLDVIKTSDYIIDLGPEGGNKGGT + IIAQGTPEEVAKVKESYTGQYLSKILEK" + gene 2486447..2486992 + /locus_tag="Ccel_2120" + CDS 2486447..2486992 + /locus_tag="Ccel_2120" + /inference="protein motif:TFAM:TIGR02357" + /note="TIGRFAM: proton-coupled thiamine transporter YuaJ; + PFAM: thiamine transporter YuaJ; + KEGG: chy:CHY_0230 proton-coupled thiamine transporter + YuaJ" + /codon_start=1 + /transl_table=11 + /product="proton-coupled thiamine transporter YuaJ" + /protein_id="ACL76465.1" + /db_xref="InterPro:IPR012651" + /translation="MDIIMEKMSTRMLVEAGVFIALAQILSFIKYEMPYGGSVTLGSM + VPIIIFAIRWGTKRGILIGLVHGFLQFALGTKFTYHPLGIFLDYIFAFGCLGLGGLFK + KNIYSIIGSTAIALAGRFSFHFLSGVILWYIYAPKGMNIYLYSLIYNSQYMLPEFIIT + SVIIFTLYKPLRKYIHGSIRR" + gene complement(2487072..2494445) + /locus_tag="Ccel_2121" + /pseudo + gene complement(2487344..2488987) + /locus_tag="Ccel_2122" + CDS complement(2487344..2488987) + /locus_tag="Ccel_2122" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: cdf:CD0436 putative recombinase" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL76466.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MDLYTIRNELNAGRTIYDLNLRVTYYARVSTEKDEQVHSLKNQI + EYYSDYIKRNQKWTYVEGYIDEGISGTSVNKRESFLKMISDAKLGKFDFIITKEISRF + SRNTLDSIKYTQELLSYGVGVLFQSDNINTLMPDAELRLTIMSSIAQDEVRKISERVK + FGFKRAIEKGVVLGNNKIWGYRKDNGKLVIDEKEAEIVRLIFDMYATRNMGIRGISTK + LDNMGIRNNNGNPFSFSTIKSILTNPKYMGYYCGNKTHKFDYKLHERKYLDQTEWVMY + KDEETVPPIVSEEIWHKANYILKGRSEKQSAEDKTSYQNKYAYSGKIICTEHNVPYYR + SLYRYSSGNKEVWQCKKYVEKGKEGCTAPSIYTSELEMIIKKAYDEIIVNRSEIIHEM + VAMYSSLGSQSKIKEDIAKVKMEINQILKMKDKLLELSINSRLSDDEFERRNNRFNDD + IDKLNIRLKELDEDEMKNKEISCSVETLRKVIAKEINYDGGPDNKLLESLLDKIEVYK + TDRKNEIDLKVYFKVLAKPFDYKILRDRKSTSVCCGQYI" + gene complement(2489013..2490290) + /locus_tag="Ccel_2123" + CDS complement(2489013..2490290) + /locus_tag="Ccel_2123" + /inference="protein motif:PFAM:PF07745" + /note="PFAM: cellulosome protein dockerin type I; glycosyl + hydrolase 53 domain protein; + KEGG: cth:Cthe_1400 glycosyl hydrolase 53" + /codon_start=1 + /transl_table=11 + /product="glycosyl hydrolase 53 domain protein" + /protein_id="ACL76467.1" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR011683" + /translation="MKGSKNKKLIVISLLILILVFENLILHINNYTVSAAAPQLLYGD + VDVSGEVNSLDYALIKSYLLGNITDFPDVNGKKAADVNGDGSIDSLDISLIKSFILGI + IERFPIETPANTFAKGADISWLPQMEASGYKFYNNKGLQQDCLQILKDYGVNSVRIRT + WVNPSTDKWNGHCSTNETIALAKRAKNLGFRIMIDFHYSDSWADPGKQTKPAAWLNLD + FNGLMKMTYDYTYDVMTKLRNNGILPEWVQVGNETNNGMLWEDGKASNNMKNFAWLVN + CGYDAVKAVNPKTKVIVHISNGFNNTLFRWMFDGLNSNGAKYDVIGMSLYPDKDNYPA + LLNQCLNNMNDMVSRYNKEIMICEIGMQYNYASESKAFIIDMVNKTKSLPNNKGLGVF + YWEPESYPGMNGYNKGCWNSDGKPTIALDGFLN" + gene complement(2490424..2490558) + /locus_tag="Ccel_2124" + CDS complement(2490424..2490558) + /locus_tag="Ccel_2124" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76468.1" + /translation="MVLNEDALKLVIVEVKLHINQRLFEQGYITEEMYTKAKEIILKS + " + gene 2490869..2492164 + /locus_tag="Ccel_2125" + CDS 2490869..2492164 + /locus_tag="Ccel_2125" + /inference="protein motif:COG:COG3290" + /note="KEGG: cth:Cthe_1311 signal transduction histidine + kinase regulating citrate/malate metabolism" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL76469.1" + /translation="MFIIGQLLINTVFAMITAYLIYIFLKNNFDIKIQLNFLVAFIVC + NGFLNGVLSTMWMSVLPIPGNLQFLKTIILTILNIILIKYLLRVEWLKAVLSFCLIIL + FVGVGNFTVPLIFYSVGINATPEIINNDLVLFFIMNLIIYCIALVLIKLTPYVKSIGN + IKNLTPVGFLLVITILIMASFLGMHFVVHFDPVSFIIVLIASLAYFFFSVWYINIYHK + YEMKKEEQKQQEFYNESLANTLHDLRRIKHDQMNHLTVLYAMHQMNKYDAAASYLKEI + IGTNQSLGNTAIYNIKNAGLFGLISSKINYANSHGIRFDLETIGEVDSVPYIKISDLC + EVIAIYIDNALEEVLNNGKLKLDMKIISTEESLTIRIENECIKVPDIKNSSKGADRGN + GLIIANKIIASYKNILSSTTFDENRMVFLQVLRIIAKEA" + gene complement(2492179..2492313) + /locus_tag="Ccel_2126" + CDS complement(2492179..2492313) + /locus_tag="Ccel_2126" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76470.1" + /translation="MKGKIKLLVLTVLSLVGVFAATASAGACWFWSYYQRECPKSLLK + " + gene complement(2492310..2492894) + /locus_tag="Ccel_2127" + CDS complement(2492310..2492894) + /locus_tag="Ccel_2127" + /inference="protein motif:PFAM:PF04647" + /note="PFAM: Accessory gene regulator B; + KEGG: cth:Cthe_1310 accessory gene regulator B" + /codon_start=1 + /transl_table=11 + /product="Accessory gene regulator B" + /protein_id="ACL76471.1" + /db_xref="InterPro:IPR006741" + /translation="MLEVITKKITNEIVLNVPGITEEKAEQIDYGLYMALADGLKLLA + VLIAALLLGQLKYAVVAVIVFSLNKSYLGGVHAKTQIGCVITHFLFIFGTVYLAQILN + IKFLNIVLFAISGIFVFLYAPADLVSKPIVTEKRKRELRIKGSILLVICFTVTLIVPN + IYSNIISVITIISSVNITPIVYRLTKNKRGGIIT" + gene 2494840..2495547 + /locus_tag="Ccel_2128" + CDS 2494840..2495547 + /locus_tag="Ccel_2128" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; SH3 type 3 domain protein; + SMART: SH3 domain protein; + KEGG: cth:Cthe_0605 PgdS peptidase. Cysteine peptidase. + MEROPS family C40" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL76472.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR003646" + /db_xref="InterPro:IPR013247" + /translation="MLQLKKMISGAATIVLCLGLFAFSSFADEIHTGTVSASVLNLRN + NPGTSSKVIGSMTRGDKLSILESSGDWLKVKTSEGDTGWAFSRYIALSKDSDENTSDR + QSDISTALSEQIVKFSKTLLGTEYLYGGTTPKGFDCSGFVQYVFKQFDISLERVASSQ + AAQGVNVSSRNLSAGDLVFFDTDGGHNSITHVGIYIGGGQFIHAASGSSTRKVVISDI + TSGYYANNFMKARRVII" + gene complement(2495643..2496638) + /locus_tag="Ccel_2129" + CDS complement(2495643..2496638) + /locus_tag="Ccel_2129" + /inference="protein motif:PFAM:PF07479" + /note="PFAM: NADP oxidoreductase coenzyme F420-dependent; + NAD-dependent glycerol-3-phosphate dehydrogenase domain + protein; 6-phosphogluconate dehydrogenase NAD-binding; + 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate + reductase ApbA/PanE domain protein; + KEGG: cth:Cthe_1022 glycerol-3-phosphate dehydrogenase + (NAD(P)(+))" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent glycerol-3-phosphate dehydrogenase + domain protein" + /protein_id="ACL76473.1" + /db_xref="InterPro:IPR004455" + /db_xref="InterPro:IPR006109" + /db_xref="InterPro:IPR006115" + /db_xref="InterPro:IPR006168" + /db_xref="InterPro:IPR006176" + /db_xref="InterPro:IPR011128" + /db_xref="InterPro:IPR013332" + /translation="MNSNIAIVGAGSMGTAMAVLLSRNGNKVKLWSPIVEEIEMLKKN + REHITRLPDVRIPEGVEFTNDISEACRGAEVVVLAVPSQTTRQNCKTLAGTISKNTIV + VTCSKGIENETCKLLSEIMKEELPDNNIAVLSGPSHAEEIGRDIPTTVVAACENIEIA + EFLQDLFMTPNFRVYTNTDVVGVELGGALKNIIALCAGISDGLGYGDNTKAALMTRGI + TEISRLGVAMGGSADTFSGLTGVGDLIVTCTSMHSRNRRAGILIGQGKSVQQALEEVN + MVVEGVATTKPAYDLAKKLGVSMPITEEAYKILFEGKDPKSAVGALMTRDKKNEM" + gene complement(2496672..2497310) + /locus_tag="Ccel_2130" + CDS complement(2496672..2497310) + /locus_tag="Ccel_2130" + /inference="protein motif:PFAM:PF02660" + /note="PFAM: protein of unknown function DUF205; + KEGG: cth:Cthe_1023 acyl-phosphate glycerol-3-phosphate + acyltransferase" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF205" + /protein_id="ACL76474.1" + /db_xref="InterPro:IPR003811" + /translation="MGLFSIKILLVLIIGYFLGSLNTSIIVGSIYGTDIRKHGSGNAG + MTNTLRTLGKTAAILVIFGDILKGVLSYIIGNIIITAIPDSSTLYISGIGGMVGGIAA + IAGHNWPVYFGFKGGKGILTSFSVVMMMDWKLGLILLAVFVVIVAITRFVSLGSILAC + AAFPIGAAIKGNGTVFILFSAILSILAIARHNGNIKRLLNGTESKIGEKKRA" + gene complement(2497379..2498704) + /locus_tag="Ccel_2131" + CDS complement(2497379..2498704) + /locus_tag="Ccel_2131" + /inference="protein motif:TFAM:TIGR00231" + /note="TIGRFAM: small GTP-binding protein; + PFAM: GTP-binding protein HSR1-related; Miro domain + protein; + KEGG: cth:Cthe_1024 small GTP-binding protein" + /codon_start=1 + /transl_table=11 + /product="small GTP-binding protein" + /protein_id="ACL76475.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR013684" + /translation="MGKPVVAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYT + EIEWRNTKFTLIDTGGIEPYSEDIIMQQMKRQAEIAIETADVIIFMVDAKDGMTATDK + EVATMLRKSQKPVVLCVNKVDRVGDPPPDVYEFYNLGMGEMQIISSVHGLGIGDLLDE + VFEHFPEDIASEEEEDVIKVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAIDT + HVEKDGQKYTFIDTAGIRRRSKISENIEKYSTIRSWTAVERADVCLIMIDAEDGVTEQ + DTKIAGYAHQQGKASIIVINKWDLIEKQTGTLEEYRKVVHEKLGFMTYAPVLFISAKT + GQRVIKIYELIKFVADQAAFRISTGMLNDLVSEAVAMVQPPSDKGKRLKIYYMTQIGV + KPPSFVVFVNDVELFHYSYERYLENQLRKNFGFEGTPIRFIHRQREKEN" + gene complement(2498764..2500080) + /locus_tag="Ccel_2132" + CDS complement(2498764..2500080) + /locus_tag="Ccel_2132" + /inference="protein motif:PFAM:PF04459" + /note="PFAM: protein of unknown function DUF512; + KEGG: cth:Cthe_1025 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF512" + /protein_id="ACL76476.1" + /db_xref="InterPro:IPR007549" + /translation="MQNKIEICMVQSGSIAEEAGVEAGDFLLSINKQNIKDIFDYRYY + QASEELLLEIEKPDGEIWEIEVEKDENEELGLEFEDSLIDGAKSCTNKCIFCFIDQLP + KGMRETVYFKDDDSRLSFLTGNYVTLTNIKKEELERIIHYRMSPINVSVHTTNPDLRK + FMLGNRFAGDVMNKIRMLTDNGIEVNCQIVLCRDINDGNELDKTIDVLSELYPSINSV + SIVPVGISRHRENLFQIKPFDMESSANVINQVHKWQNKLLQEKSSRVIYLSDEFYINA + GVDVPKYKDYEGFPQIENGVGMVALLRHEVKEALKHKKKNVNTAGRKVSIVTGRLVYK + NILQLVDEIKNVYNGLEANVYDIENDFFGPYVTVTGLLTGLDIIKQLKGRDLGQELLI + SSNMLRAGEHVLLDDYTVERLEVELAIRIRIVDSTGADFVNAVIGN" + gene complement(2500335..2500799) + /locus_tag="Ccel_2133" + CDS complement(2500335..2500799) + /locus_tag="Ccel_2133" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76477.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene complement(2501011..2501193) + /locus_tag="Ccel_2134" + CDS complement(2501011..2501193) + /locus_tag="Ccel_2134" + /inference="protein motif:TFAM:TIGR01031" + /note="TIGRFAM: ribosomal protein L32; + PFAM: ribosomal L32p protein; + KEGG: chy:CHY_1453 50S ribosomal protein L32" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L32" + /protein_id="ACL76478.1" + /db_xref="InterPro:IPR002677" + /translation="MANPKRRWSKARTGKRRSQWKLASPTLVSCPQCHVFKLPHRVCG + ECGYYDGKQVVKVEAK" + gene complement(2501237..2501734) + /locus_tag="Ccel_2135" + CDS complement(2501237..2501734) + /locus_tag="Ccel_2135" + /inference="protein motif:PFAM:PF02620" + /note="PFAM: protein of unknown function DUF177; + KEGG: cth:Cthe_1027 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF177" + /protein_id="ACL76479.1" + /db_xref="InterPro:IPR003772" + /translation="MRVNVSEIIKTEGAGIDINLVDDLPEIREYNTSVEFKPSFKFTG + RIVNLGGLLKLSGELHYEFIAKCLRCLKSLDMTEDIEVIESFVEVSKSDDVDAYTFEG + NVVDIDKPLIDNIILAMPMKIVCSEDCKGLCRTCGTNLNIKSCKCDEREIVDPRMEIL + KDYFK" + gene complement(2501858..2503051) + /locus_tag="Ccel_2136" + CDS complement(2501858..2503051) + /locus_tag="Ccel_2136" + /inference="protein motif:TFAM:TIGR00016" + /note="TIGRFAM: acetate kinase; + PFAM: acetate and butyrate kinase; + KEGG: cth:Cthe_1028 acetate kinase" + /codon_start=1 + /transl_table=11 + /product="acetate kinase" + /protein_id="ACL76480.1" + /db_xref="InterPro:IPR000890" + /db_xref="InterPro:IPR004372" + /translation="MKVLVINAGSSSLKYQLIDMKNETVLAKGLCDRIGIDNSFIKQS + RGSEEAVILNKELKNHKDAIEAVISALTDDNMGVIKNMSEISAVGHRIVHGGEKFNSS + VVIDENVMNAVRECIDVAPLHNPPNIIGIEACQQIMPNIPMVAVFDTTFHSSMPDYAY + LYALPYELYEKYGIRKYGFHGTSHKYVAERASAMLDKSLNELKIITCHLGNGSSICAV + NKGKSIDTSMGFTPLQGLAMGTRSGTIDPEVVTFLMEKENLDVKGVSKLLNKKSGVLG + ISGVSSDFRDLHAAADAGNSRAELAIEIFCYGVKKFIGEYIAVMNGVDAIVFTAGVGE + NNSVVRNMIISDMDFLGIKIDEEKNKLRGQEVDISTADAAVRTLVIPTNEELAIARET + VRLVK" + gene complement(2503098..2504093) + /locus_tag="Ccel_2137" + CDS complement(2503098..2504093) + /locus_tag="Ccel_2137" + /inference="protein motif:TFAM:TIGR00651" + /note="TIGRFAM: phosphate acetyltransferase; + PFAM: phosphate acetyl/butaryl transferase; + KEGG: cth:Cthe_1029 phosphotransacetylase" + /codon_start=1 + /transl_table=11 + /product="phosphate acetyltransferase" + /protein_id="ACL76481.1" + /db_xref="InterPro:IPR002505" + /db_xref="InterPro:IPR004614" + /translation="MNFLEQIVSRAKKDIKTIVLPESNDIRTLKAAAMIQEQGIANVV + LVGNNDDIKKLGGDLDISKAKIVDPTNFERFDEYVNTLYELRKAKGMTQEEAKKILSE + NPLYFGIMMVKMGEADGMVAGAINSTANTLRPALQILKTAPGAKLVSAFFVMVVPDCE + YGENGVFIYGDSGLVENPNAEELSEIAIASSKSFKNLVQAEPVVAMLSYSTYGSAKSV + LTEKVIEATKLAKEKAPDLQLDGELQADAAIVPSVGASKAPGSSVAGKANVLIFPDLN + CGNISYKLTQRLAKAEAYGPIIQGIAKPVNDLSRGCSAEDIVGVVAITCVQAQNI" + gene 2504474..2506075 + /locus_tag="Ccel_2138" + CDS 2504474..2506075 + /locus_tag="Ccel_2138" + /inference="similar to AA sequence:KEGG:CKL_2500" + /note="KEGG: ckl:CKL_2500 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76482.1" + /translation="MKKKLLLYSTSFFCGMSIMAVELSVSKLLAPYFGTSQIIWTVII + GLIMISLSIGNVLGGRSADKHNSMSRLYLIIWAAAIWIAIIPFVGKYIVVGIIGLLFM + FLPQNLLITGSAISCLVLFSVPLIGLGMVSPYLVKLGVTDIENTGKTTGKIYAMNTIG + SIIGTFLPTFVTIPTVGTSKTFLIFALVLNVICLAYFIMNRIKPVKTSLTFLIIFALL + FAPLSNSYAFWRDCVVEDESVYNYLQVTEDKDSVYLSTNVAFGVQSVYRKDNKLSGMY + YDYALAAPQFIKDFRSGKKIDLLVLGNGTGTYAKQSKIYYPGIKTDAVEIDPKIVDLS + KKYFDLKEDEATIYETDGRTFLSDKNCGVYDVIMIDAYHDITIPFHMATQEFFSKVSE + HLKPGGVIVLNINMKAKGDNPINRYLSQTVKSVFEKVYTCGLKTSTNELLFASNDSDM + HNNFNENISSMNTSDPLKNVFQFVNENLEEVTDSSLIFTDEVAPVDILGQKLLNTMVQ + DETSDLKEMINFKEKGFKGLLDMLR" + gene 2506212..2507681 + /locus_tag="Ccel_2139" + CDS 2506212..2507681 + /locus_tag="Ccel_2139" + /inference="protein motif:TFAM:TIGR00464" + /note="TIGRFAM: glutamyl-tRNA synthetase; + PFAM: glutamyl-tRNA synthetase class Ic; + KEGG: ctc:CTC00977 glutamyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="glutamyl-tRNA synthetase" + /protein_id="ACL76483.1" + /db_xref="InterPro:IPR000924" + /db_xref="InterPro:IPR001412" + /db_xref="InterPro:IPR004527" + /translation="MQNVRTRFAPSPTGYMHIGNLRTALYEYLIARKYNGKFILRIED + TDQERFVEGAIDVIYKTLKLAGINHDEGPDVGGSYGPYVQSERKGMYLEYAKKLVELG + GAYYCFCTKERLAELKEKQDAEGHGHRYDRCCLKLSKEEIEENLRKNVPYVIRQKMPD + TGTTSFNDAVYGTITVDNSELDDQILIKTDGLPTYNFANVIDDHQMEISHVVRGNEYL + SSTPKYNLLYEAFGWEVPTYVHVPLILKASGQKLSKRAGDPSFEDLVSMGYLVEAIVN + YVVLLGWSPSTNQEIYSLKELEEVFEISGISKAPAIFDINKLTWMNGEYIRRMPIEEF + HKLALPFYENAITNKNIDTLKLSKLLQIRTEVLTTIPETIDFIDQLPDYDVQMYVHKK + SKTTLENSLENLIAAYPILEGISDWNADSIHEKIFAHIEALGVKNSLILWPIRTAVSG + KAVTPGGAIEIADIVGKEETLKRISIGIDKLKAALGNNA" + gene 2507717..2508928 + /locus_tag="Ccel_2140" + CDS 2507717..2508928 + /locus_tag="Ccel_2140" + /inference="protein motif:TFAM:TIGR02535" + /note="TIGRFAM: phosphonopyruvate decarboxylase-related + protein; proposed homoserine kinase; + PFAM: metalloenzyme domain protein; Homoserine kinase + family protein; + KEGG: cth:Cthe_1292 phosphoglycerate mutase" + /codon_start=1 + /transl_table=11 + /product="proposed homoserine kinase" + /protein_id="ACL76484.1" + /db_xref="InterPro:IPR004456" + /db_xref="InterPro:IPR006124" + /db_xref="InterPro:IPR013371" + /translation="MKYVVILGDGMADYTIPELDNKTPLQYAKKPSIDMLASKGTVGL + VRTVPEGIAPGSDACNLSVMGYNPEVYYTGRSPLEAVSMGIELSPTDVALRCNLVHLS + EEESEYSQKIMIDYSSDEISTAESKVLIDAVNNALKTENIVFHPGISYRHCVVWSNGR + TGLGCTPPHDISEKRISDFLPKEESGLLLDLMKKSYDILKDHPINQARRAKGLRTANS + IWLWGEGKKPALSSFQEKYHITGAMVSAVDLLKGIGICAGLDSIDVEGATGNIDTNFI + GKANAAIQALESGKDFVYVHVEAPDECGHRHEIENKVKAIELLDSQVVKPILEGISKY + DYRVLVLPDHPTPLRLRTHTSEPVPFIIYDSTNEIQSQAKSYDEFEAKKSGVFIEDGY + KLMDLLIKGSF" + gene complement(2509267..2525158) + /locus_tag="Ccel_2141" + /pseudo + gene complement(2510522..2510701) + /locus_tag="Ccel_2142" + CDS complement(2510522..2510701) + /locus_tag="Ccel_2142" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76485.1" + /translation="MPDKVIIKPDITPEERLKRLNKVEAVISQITGYQCSNVPFVKEL + NRKNKTSRKHVNNNQ" + gene 2510829..2512343 + /locus_tag="Ccel_2143" + CDS 2510829..2512343 + /locus_tag="Ccel_2143" + /inference="protein motif:PFAM:PF07508" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: aoe:Clos_1652 recombinase" + /codon_start=1 + /transl_table=11 + /product="Recombinase" + /protein_id="ACL76486.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MIKTCIYLRKSREDEKMEKELGKGETLSKHREDLLSYAKMKDLC + IVNIYQELVTGESLLYRPAMLELLKDVETGLYEAVLVMDLQRLGRGDMEEQGIILKAF + KNTNTKIITPDKEYDLSNEFDEEYSEFEAFMSRKEYKMINKRLQRGIIHSVNNGNYNS + PYPPFGYTIKQEKLGRTLEPHPQQSEILKSIFDWYVNESIGSQIIAQRLNSLGLKTNK + NNSWTCQAVTGILKNPVYTGKIAWRKTTSNRISKKKNRRMQDRQDWILAEGKHPALIS + ESIYEKAQNIMKNNSKTHTKQSVSLHNTLAGIIVCGVCGAKMRYRPYLNSEPHLICIN + KCGNKSSKFGYIEDCVISSLKEYLSEYNFKLYGEPQGKNSSQAAFKSSVALLEKQLKE + ASIQKDNIYNLLEKGIYSIEDFNQRLLSINTRISELQHSISNTGILYKKSLVQKPGKT + EFCSGPTKIMHIYKNLKNPEDKNILLKSVLDKVEYIKGKDCRNDNFTLRIYPMF" + gene complement(2512447..2512845) + /locus_tag="Ccel_2144" + CDS complement(2512447..2512845) + /locus_tag="Ccel_2144" + /inference="protein motif:PFAM:PF06268" + /note="PFAM: Fascin family protein; + KEGG: fscn1l; fascin homolog 1-like, actin-bundling + protein (Strongylocentrotus purpuratus)" + /codon_start=1 + /transl_table=11 + /product="Fascin family protein" + /protein_id="ACL76487.1" + /db_xref="InterPro:IPR010431" + /translation="MSFMGARVAVKVSNGEYLCIEESNSLRAGMYDEMRKDIIFTVPA + ALSGAYIQTHTRDLLSVADDGTVKIKSNKELIANTESFDFICLGMNKVAIRAHNGKFV + SFQKDVNKKLCAASDTIGPDEIFEVIVVFR" + gene complement(2512909..2514741) + /locus_tag="Ccel_2145" + CDS complement(2512909..2514741) + /locus_tag="Ccel_2145" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + KEGG: cth:Cthe_2944 periplasmic sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76488.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MLETLIKVVIYIFSAGVHLFLLFKIKSIKHSRQLHRICALNILI + LFLWTVQGLSNIIIDSITGYRIYYIYFFGSVCVFFLPATLIMLCILLVKNKISHIATY + VLICIPPVTSTLMLVTNSYHKLFIKYISADIKTLVFGNYYYIHCTWQLIYATFAVLYL + IYYSLKYTNCLTRQILLVALGIIMPIAVDYVVYLNYFSNLPISLPDSIHTLSYCFTTV + CLTIAIRKYKFLDTLPIAIRSIVDYISDSFVVIDYRNNILEMNKNFKTEFGPIIKHNE + NDFYKVMKDDNFQNLKKHISKIKNERTHPNIRTEQEFIINNVQRYFEIEIIHVYAHEQ + YIAILILFRDMTEHMQVIKLMEENAKQMIEKARLISLHNLIGGISHNMKSPLMSSSGG + ILALKNHTRRIESLISEMNNKGEYSEYLDIIADMKKWEDSIKNYLVYMSDIITAVKEQ + AASMIGNQIKRFKVGELFSKISILLDFELKKSNCSLNSILNIKEDTYIEGDISSLTQI + LGNAVINATQAYSEGGVINLQADRKPEGVLFTIQDFGKGMPLDIKNKIFNEMVTTKGK + DGSGLGLYFANIAIKSQFRGSISIESEEGKGTTVLITIPIKMID" + gene complement(2514754..2515374) + /locus_tag="Ccel_2146" + CDS complement(2514754..2515374) + /locus_tag="Ccel_2146" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; response + regulator receiver; + KEGG: cth:Cthe_0725 response regulator receiver modulated + metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL76489.1" + /db_xref="InterPro:IPR001387" + /db_xref="InterPro:IPR001789" + /translation="MEEKFKIIIIDDEQGVIDAIKANLSSEYSVDGFVTSKEGIDAIK + ENNYDLLILDYFIDSMNGKQITEKIRKTDDELYIMLLTGKAEEAPGLETLKNLDIQMY + CEKSANFEEILIMIESARKSVEHSRKEGSFGIRLKRLRRIHNISQEDLGKVLGVGRTA + IANWETNQTEPTGENIKKLAELFRVTTDYLLCYKANFGDTPNLAKK" + gene 2515714..2516139 + /locus_tag="Ccel_2147" + CDS 2515714..2516139 + /locus_tag="Ccel_2147" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fjo:Fjoh_0438 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76490.1" + /translation="MTQALTPSPSDCNVKIVIYVDTAKARTGSTQGIYMVDNRAPKSY + NEGTPSLNTYCNTNDYMCWRILPIDPDTHDTVAITSFDQSLAWGYGGKPKASDNTNTV + WVGRAENQGINQTPINIIIAENGKNPVTLKINPVLSVNG" + gene 2516173..2516595 + /locus_tag="Ccel_2148" + CDS 2516173..2516595 + /locus_tag="Ccel_2148" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fjo:Fjoh_0437 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76491.1" + /translation="MTDTIVLKAQIRAQTKIVITVDTSRVLSGDTRGIFMIDNRAEVG + SSNEGTLELSTKCFAGDYVSWLVNPIDPDTQDTVSIAGFQVSSGNVFGGEGSPEPASD + DNTYWMGRAFNQGSTTYQIKLLINGTHVIQWDPFITAI" + gene 2516985..2518031 + /locus_tag="Ccel_2149" + CDS 2516985..2518031 + /locus_tag="Ccel_2149" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76492.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQENLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(2518258..2518551) + /locus_tag="Ccel_2150" + CDS complement(2518258..2518551) + /locus_tag="Ccel_2150" + /inference="similar to AA sequence:KEGG:Cthe_2851" + /note="KEGG: cth:Cthe_2851 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76493.1" + /translation="MTKQEISQILEGLVNDFIDEKIGKGEVVDKLITSINPLEIYNLE + NELLITDCYFAIKHLGEDGYETTIKELVYFRECFMGIKKYDTEQKNQFILGQI" + gene complement(2518579..2519625) + /locus_tag="Ccel_2151" + CDS complement(2518579..2519625) + /locus_tag="Ccel_2151" + /inference="protein motif:PFAM:PF01471" + /note="PFAM: Peptidoglycan-binding domain 1 protein" + /codon_start=1 + /transl_table=11 + /product="Peptidoglycan-binding domain 1 protein" + /protein_id="ACL76494.1" + /db_xref="InterPro:IPR002477" + /translation="MSGDDVMDLQLKLIKLGYKGENGNAFKATGYFGTDTLAALNKYK + DKVLPAGNRGSNRGLAGDTTLAYLNYSYNMHYANNLTESNSRAYATNNAKYTFNQQLS + NVKSSNLPNKPVAPKPSTNMGTTVNSKGSGESASSKVMGNDNIIPIYSIVPKPTMTKE + AAIDIIGNVDVNNFIGFDWFSKVYNSVEINSIPVVITYRDGDYTYSYMLGQCHPVSFF + GVSIDPDDLYSYQLVFTDAPQYDYGIVFVGETSLDYMKDVTILNGTYYSPKTTIDRIG + QIEAKGVDFSKFQKKVISSRTSTEGGSSSVIRYSDSNGTSFVIHEVTDASGKLLHRDF + DAVRIESGQLINKK" + gene complement(2519644..2522837) + /locus_tag="Ccel_2152" + /pseudo + gene complement(2522834..2524486) + /locus_tag="Ccel_2153" + CDS complement(2522834..2524486) + /locus_tag="Ccel_2153" + /inference="protein motif:TFAM:TIGR01643" + /note="TIGRFAM: YD repeat protein; + PFAM: YD repeat-containing protein; + KEGG: cth:Cthe_3052 YD repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="YD repeat protein" + /protein_id="ACL76495.1" + /db_xref="InterPro:IPR006530" + /translation="MKIPRKRLYIQEPDGKSNYTEYFQYGGKNKYGDIKSQTDRNGNK + TQYEIDARGNVTKITNPDGSTQLKEYDEKNNVTKEVDECGKTTYNVYDENKINLIKKV + QPLNETDVYDGTNNTGFAITFYQYYTGEESGSSAKGLLKSETDPEGNTTTYTYNTYGD + VKAVSDPETGKVTTYEYNRIGWKTAQITQKGNRTEFTYDKNGQLIKTTTVSSKNETQR + TIFDLLGRKIQEITPNQYDDTKDNVEADTYTDNTVGTKYEYFDSGKIKEVTNALGETT + SYTYDVYGNTLTEAKPNGAIYRYEYDVLDRLLKIYFRDNSSVAEELLTQYSYATLEDG + KTQTTETKYLNSKDKAVTVYIYDYADRLVEQQNPDATKQRTIYNANGTINRQIAANGS + STYFKYDGLNRLTEQWAPFEVSNGNTLYTYNKTEYDKAGRKSAVKSGKDKVTLWSIPE + SLAITNYQYYKNGNVSQTRDSEGRKTEYLYDDDGNVIKESVYTNATNKLVTDYTYNYL + GKLDKKEQHVKTGDLYGKDFNDKRTLYLQPPTLMTRMVIQKL" + gene complement(2525335..2526135) + /locus_tag="Ccel_2154" + CDS complement(2525335..2526135) + /locus_tag="Ccel_2154" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76496.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(2526177..2526755) + /locus_tag="Ccel_2155" + CDS complement(2526177..2526755) + /locus_tag="Ccel_2155" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76497.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene complement(2526843..2527778) + /locus_tag="Ccel_2156" + CDS complement(2526843..2527778) + /locus_tag="Ccel_2156" + /inference="protein motif:PFAM:PF07859" + /note="PFAM: Alpha/beta hydrolase fold-3 domain protein; + KEGG: nar:Saro_0231 esterase/lipase/thioesterase" + /codon_start=1 + /transl_table=11 + /product="Alpha/beta hydrolase fold-3 domain protein" + /protein_id="ACL76498.1" + /db_xref="InterPro:IPR013094" + /translation="MNYEADFRQFVDSEETLNSIQEKDWAFYGQCGLEYPFLYATPDP + DRQDYFARPYSEDPLQRLDIHHLKTPDKKKRPVIFYIHGGGWTNEDKSNTRFVAHDWI + KKGYTVVSINYRLSPNVTHPAIIEDCAKALKWVQENIHEYGGDPNRICVVGHSAGGHL + AALLVTGVKWHKKYDIDIKKVKCWIPMSGIHDFNMPENYMPPMLNAAIIAMLGGDNNK + AECSPVSHITGKEPPCLIVHGGNDWLVPKTNSIELHEKLIEKGAKDSRLYIVKGYAHC + NMILGFERPGHKPAELINKYLDEMLPTCEGRKLQD" + gene complement(2527897..2528691) + /locus_tag="Ccel_2157" + CDS complement(2527897..2528691) + /locus_tag="Ccel_2157" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: afl:Aflv_1572 ABC-type multidrug transport + system, permease component" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76499.1" + /translation="MNIFLRELKANAKALIIWSVCIFLLILSSMGEYTAYSSGEGGGD + VFEKMPYSLKALMGMGSFDVTTIIGYFAMLFVYIELAVAIHAILLGSGIIAKEERDKT + TEFLMVKPVSRTKVITSKLLAAFVNVVIINLISFASSLIMIDIYNKGEDITEKIVVFF + VSMFIVQLIFMSLGAALASVMNKPKASGAAAAGILMGAFVIAKVTDLTDKVNVINVLS + PFKYFSYQNIVDGRSLNVAIVVLCIVLVGVFVSLTYLFYKNRDLKV" + gene complement(2528710..2529510) + /locus_tag="Ccel_2158" + CDS complement(2528710..2529510) + /locus_tag="Ccel_2158" + /inference="similar to AA sequence:KEGG:Tlet_1861" + /note="KEGG: tle:Tlet_1861 putative ABC-2 type transport + system permease protein" + /codon_start=1 + /transl_table=11 + /product="putative ABC-2 type transport system permease + protein" + /protein_id="ACL76500.1" + /translation="MNIYLHELKSMRRTAAIWTISLIALSALYLCIYPSIASDAEEFK + KLLANYPPALRAMFGIDIDYITSILGFYSMVFSFITLCGSIQGMNLGISILSRESRER + TADFLLVKPVSRKSIVSAKLLAAFTTIVATNVGFYVATILIVNAVKTEDYSNKLFLMI + NLTLFFMQIIFMSIGMVVSVFFNKLKSILPISLGVVFGFYLTGVIISIGKNVDAVRYI + SPFKYFDSAYIIKNASYEVSYLVASAVIVVTAIITSYIVYIKKDIHAV" + gene complement(2529516..2530397) + /locus_tag="Ccel_2159" + CDS complement(2529516..2530397) + /locus_tag="Ccel_2159" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: afl:Aflv_1573 ABC-type multidrug transport system, + ATPase component" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76501.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSVIEIKNLTKSYGKARGINNINFSVEQGEIFGFIGPNGAGKST + TIRTLLGLIYPSEGSATIFGKSCVEHPEVRKEVGYLPSEVFYYDNMRVMDLLKYSASF + YKKDCTGRIQELARVMDLDLKKKIEDLSFGNKKKVGIVQGLLHEPKLIILDEPTSGLD + PLMQQKFFELIAEENRKGATVFFSSHILSEVQKMCSRVAFIKDGKIIKLEKMSTLQEN + SYKKISIETKEIIPKEVFDIKGVSKLEIKGNNVTFIFKGNINLIIRKMADIYLRNISI + EEPDLEEIFMHYYVKED" + gene complement(2530847..2532130) + /locus_tag="Ccel_2160" + CDS complement(2530847..2532130) + /locus_tag="Ccel_2160" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL76502.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene complement(2532232..2532846) + /locus_tag="Ccel_2161" + CDS complement(2532232..2532846) + /locus_tag="Ccel_2161" + /inference="protein motif:PFAM:PF00440" + /note="PFAM: regulatory protein TetR; + KEGG: ckl:CKL_3748 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TetR family" + /protein_id="ACL76503.1" + /db_xref="InterPro:IPR001647" + /translation="MKKFLNLPEDKRKRIVDAALKSFGANGYKKTSVSDIARAAGISK + AMVFHYFGTKKDLYLYLIRMCTDIIINEINKGFDSTATDFFERIKQSSDIKVSVMKRH + TDIPFFLISVYFESDPEVKSDITSFLSIGNNYRNKIAFDGMDTSKFKDGIDPKLVMKM + LIWMAEGYSSQLSVSTLDLDIMLKEFYECMDLLRNNFYKEHSCK" + gene complement(2533033..2534343) + /locus_tag="Ccel_2162" + CDS complement(2533033..2534343) + /locus_tag="Ccel_2162" + /inference="protein motif:PFAM:PF00657" + /note="PFAM: lipolytic protein G-D-S-L family; cellulosome + protein dockerin type I; + KEGG: cac:CAC0537 acetylxylan esterase" + /codon_start=1 + /transl_table=11 + /product="lipolytic protein G-D-S-L family" + /protein_id="ACL76504.1" + /db_xref="InterPro:IPR001087" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MRKITIKRKSGAFLIIFSLLFVLFLSSVGSINVSALEPPRLYGD + CNGDNNVDALDFVAFKQYIMEQNHAYDLYKDLNSDNTVDAVDFAILKQFLLGIVKSLP + INSAPTQPGVLLVGRFDTGDPAGPKFGWSTSTIKANFKGTGISANLNSMGDNWFNVVI + DGVVKSPVNVPSGSSGPVTLATDLTNGNHTIELVRRTEAWIGEVQFLGFNVTDGSLLA + PPAPSNRRIEFIGDSITCGYGNEGTSQYQSFTNKNENAYLAYGATTARLLNADPITVC + WSGKGLVQNYGGDLNDLMPAVYSRILPYNSTLTWDTSKWIPQVVVINLGTNDFSTGSI + DKTTFAKAYTNFVTKIRGQYPDAHIYCAVGPMLSWDQLAKCKDAITSVVDQKNTSGDS + KIHFIEFPVQVEANGYGEDWHPSVKTHELMANQLAATIKTDLGW" + gene complement(2534677..2534772) + /locus_tag="Ccel_2163" + CDS complement(2534677..2534772) + /locus_tag="Ccel_2163" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76505.1" + /translation="MAKAKPKKVVIIYKGKIDIKELILKIFTCNL" + gene complement(2534937..2535485) + /locus_tag="Ccel_2164" + CDS complement(2534937..2535485) + /locus_tag="Ccel_2164" + /inference="protein motif:PFAM:PF01812" + /note="PFAM: 5-formyltetrahydrofolate cyclo-ligase; + KEGG: amt:Amet_4132 5-formyltetrahydrofolate cyclo-ligase" + /codon_start=1 + /transl_table=11 + /product="5-formyltetrahydrofolate cyclo-ligase" + /protein_id="ACL76506.1" + /db_xref="InterPro:IPR002698" + /translation="MRKKYISLRNSISSDNLQLKSQIIADKLNELDFVKRADTLMCYV + SFGSEVYTHGIINAWFSQDKEVCVPRVLKGKGRAMEAVKISSLEELEQGTFGVLEPPL + EQKNIITPASIDVVIVPGCAFDLNRNRMGYGAGYYDRFLKLISHNCLKVGIAFDFQIM + GKIPCNELDIPMDILITEERII" + gene complement(2535522..2535845) + /locus_tag="Ccel_2165" + CDS complement(2535522..2535845) + /locus_tag="Ccel_2165" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1296 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76507.1" + /translation="MKQEYSNNSGFDNSHITWNSSEVTSIEREMLLENLNYINSKPVS + NWIKGLLTVLAVLIPGIGQIFGLVVGMLFVSDKVKEKRFFGMVLIAVSVVMFSILLFL + WLKWR" + gene complement(2535923..2536213) + /locus_tag="Ccel_2166" + CDS complement(2535923..2536213) + /locus_tag="Ccel_2166" + /inference="similar to AA sequence:KEGG:Cthe_1299" + /note="KEGG: cth:Cthe_1299 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76508.1" + /translation="MSITISLWSTKQGELNRFLYSFYGKDMEVDYSLRRWAQDFYMPL + DSVDMICALMDNSEKYDVSMYIHMENGYLHKITDSNYEDVIKGLFEIYYVPV" + gene complement(2536304..2537614) + /locus_tag="Ccel_2167" + CDS complement(2536304..2537614) + /locus_tag="Ccel_2167" + /inference="protein motif:PFAM:PF01979" + /note="PFAM: amidohydrolase; Amidohydrolase 3; + KEGG: cth:Cthe_1199 amidohydrolase" + /codon_start=1 + /transl_table=11 + /product="amidohydrolase" + /protein_id="ACL76509.1" + /db_xref="InterPro:IPR006680" + /db_xref="InterPro:IPR013108" + /translation="MLDILIKNTELITNDESKPLIKDGYIGIKDGCIDFISDSLPENV + KAREVIDGKNKIAMPGLVNAHSHSAMTLMRNYADDIALEKWLFDNIFPVEAKLTDKDV + YWGTMLGISEMLKSGITAFADMYMFMDEVARAVTETGIKANLCKSPVQFFEDGQLKRL + DKSQGTIDYYNSYHNSANGRIKVFVEIHSVYMFNENTLRNAAQLAKQLNTGIHIHLLE + TLSEVESSKKDYDMTSIEICRETGVLDVPVMAAHCVHLTDGDLRIMKEKRASVVHNPT + SNLKLGSGIARVPEMMDMGINVCLGTDGAASNNNLNMFEEMNLAAILHKGVAMNPQLM + KAQDVLKMGTVNGARAIGFDDTGILSKGMKADIILVDTDKPHFYPKNNPMSMIVYSAQ + AADVDTVIVDGNVLVKKREFIHIDEERIKFEVDTLSKRLLGRQP" + gene complement(2537747..2538994) + /locus_tag="Ccel_2168" + CDS complement(2537747..2538994) + /locus_tag="Ccel_2168" + /inference="protein motif:TFAM:TIGR00936" + /note="TIGRFAM: adenosylhomocysteinase; + PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer + specific 2-hydroxyacid dehydrogenase NAD-binding; + S-adenosyl-L-homocysteine hydrolase, NAD binding; + KEGG: cth:Cthe_1200 adenosylhomocysteinase" + /codon_start=1 + /transl_table=11 + /product="adenosylhomocysteinase" + /protein_id="ACL76510.1" + /db_xref="InterPro:IPR000043" + /db_xref="InterPro:IPR006140" + /db_xref="InterPro:IPR015878" + /translation="MKSVIRDISLADKGKQKIEWVRKNMPLLRSLEDEFRETKPFNGV + RVVVSVHLEAKTAYLAKLFAIGGGEVSVTGSNPLSTQDDVAAGLVADGLDVYAWYNST + KEEYEEHLNLALGYKPNIIIDDGGDLVNLLHTKRKELLPHIMGGCEETTTGVLRLKAM + EKEEILRFPMVAVNNANCKFLFDNRYGTGQSVWDGINRTTNLIVAGKNVVVAGYGWCG + KGIAMRAKGFGASVIVTEVDPIKAAEAVMDGFKVMKMSDAAKIGDYFITVTGCRDVIT + AEHFNLMKDGVILCNAGHFDVEVSVEELEKIAVEKQIQRNNITGYKMENGRWINLLAE + GRLVNLAAGDGHPAEIMDMSFALQALSAEYMLKNYNKLGNKVIDVPVDIDQKVATMKL + KSWGVKIDKLSKEQKNYLNSWAE" + gene complement(2539242..2539607) + /locus_tag="Ccel_2169" + CDS complement(2539242..2539607) + /locus_tag="Ccel_2169" + /inference="similar to AA sequence:KEGG:Cthe_3163" + /note="KEGG: cth:Cthe_3163 carbohydrate-binding family 25 + protein" + /codon_start=1 + /transl_table=11 + /product="carbohydrate-binding family 25 protein" + /protein_id="ACL76511.1" + /translation="MAQKSYDSNGVFLSKKTLYSGDKVILKYNGLLSQAGAEGIYVHI + GYGENWDNRSFVPMKNLNGIFEAEIDIQEGKICGICFKDSADNWDNNSGENYIFTISK + KPARKKQTKKTSNVIKIKH" + gene complement(2539707..2540876) + /locus_tag="Ccel_2170" + CDS complement(2539707..2540876) + /locus_tag="Ccel_2170" + /inference="similar to AA sequence:KEGG:Cthe_3162" + /note="KEGG: cth:Cthe_3162 SAM dependent + methyltransferase" + /codon_start=1 + /transl_table=11 + /product="SAM dependent methyltransferase" + /protein_id="ACL76512.1" + /translation="MNKKSVQKLVLFLTGLEQRVVDNSSFFKGIVIKLKSGTKQYEAN + ITLKDGKLFLNYNGRTDRLEISWLSARVSKIAESYEALTLVYEERGTSIIIEADDKNV + KMRSKDTKATEACKGHNETAQIANRDYFIKVGPADDVLKAIGILGENGKIRNDMIRKY + NQIDHYIELVDDMLKTLCSKYGSLNIIDCGCGKSYLSFVLNYYIKDVLKKNCYFTGLD + ISKIVIDASYRIAENLGYKNMNFRITDIRDYTAEKDIHLVISLHACDTATDEAISLAV + RNNAKAMVVVPCCQKEILSQYSFDMLHSITKHGVLKARLADILTDGIRLLILEALGYK + VSIVEYVSPLETPKNLMIRAEKAGSINYSLINEYKKLKETLGIHPTIEKLISPYF" + gene complement(2540897..2541634) + /locus_tag="Ccel_2171" + CDS complement(2540897..2541634) + /locus_tag="Ccel_2171" + /inference="protein motif:PFAM:PF00849" + /note="PFAM: RNA-binding S4 domain protein; pseudouridine + synthase; + KEGG: cth:Cthe_3161 ribosomal small subunit pseudouridine + synthase A" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase" + /protein_id="ACL76513.1" + /db_xref="InterPro:IPR000748" + /db_xref="InterPro:IPR002942" + /db_xref="InterPro:IPR006145" + /translation="MKQKQRLDKVLSNFGFGSRNYIKGAVKKGLVTVDGRIIKDSGIH + VDPEVSIIEIDGERLNYRKYIYIMLNKPQGVISATSDRKQKTVFDILPEEYKCFDLFP + AGRLDIDTEGLVLMTNDGQLSHEILSPKKHVPKQYYAKVMGRVNQEDAEAFSRGVTLD + DGYQTLPAVLEILKSDDLSEIKLTIVEGKFHQVKRMFEAVGKKVIYLKRLSMGNLRLD + ESLQLGECKELGESDIELLKQAIIIDN" + gene complement(2541671..2543086) + /locus_tag="Ccel_2172" + CDS complement(2541671..2543086) + /locus_tag="Ccel_2172" + /inference="protein motif:TFAM:TIGR00446" + /note="TIGRFAM: RNA methylase, NOL1/NOP2/sun family; + PFAM: Fmu (Sun) domain protein; + KEGG: cth:Cthe_3160 NOL1/NOP2/sun family RNA methylase" + /codon_start=1 + /transl_table=11 + /product="RNA methylase, NOL1/NOP2/sun family" + /protein_id="ACL76514.1" + /db_xref="InterPro:IPR001678" + /db_xref="InterPro:IPR011023" + /translation="MKLPIEFVEKMQGLMGDEFASYLESYIKPRFYGLRVNTLKISVE + EFLKIAPFHLEPVPWARDGFYYQEGDNPGRHPYYYAGLYYIQEPSAMLPGAVIGVKPG + ERVLDLCAAPGGKTVQMAAQMKGQGLLVANDINSDRVKALVKNVELAGVRNALVLNEP + PDKLAARFQNYFDRIMVDAPCSGEGMFRKDEDAIKSWEKFKCEKCCGMQWNILEKVDM + MLKPGGVILYSTCTFSPEEDELMIERFMDEHKGMYELLEIPKAGSVEGGRTQWSKGGY + NFDKAARLWPHKLNGEGHFAALLQKKDSSENFLYQENPVYVKPGDRSQGIKVSGIKEV + KEFNPLLGGFMENNTNLDLNGYLFQKGVNLYHLPVEIPDLSGLKVAKFGWYLGETGNK + GFVPSHSLAVSMSKSEMKNTISFESNSRDVNSYLKGETLIVSGEKGYTGVCVDNFPLG + WAKQTGDMLKNLYPKGWRKMS" + gene 2543223..2543298 + /locus_tag="Ccel_R0053" + /note="tRNA-Glu1" + tRNA 2543223..2543298 + /locus_tag="Ccel_R0053" + /product="tRNA-Glu" + gene 2543503..2543985 + /locus_tag="Ccel_2173" + CDS 2543503..2543985 + /locus_tag="Ccel_2173" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 + domain protein; Sigma-70 region 4 type 2; + KEGG: cdf:CD0677 putative RNA polymerase sigma factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL76515.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MTCDEFSTRIVAMMQTLYRISYTQLSQSCDRDEAVQECLYKAWK + KRHQLKDEHYMQTWVIRILINECHNIQRKKGRELPLNEVPERVVPKDANLELHDALFS + IDETLRMPIILHYIEGFSIGEISKILRCPQGTVKSRMLRGRQKLKIILSEEVKLPCEI + " + gene 2543973..2545070 + /locus_tag="Ccel_2174" + CDS 2543973..2545070 + /locus_tag="Ccel_2174" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mst:Msp_0912 asn/thr-rich large protein + family protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76516.1" + /db_xref="InterPro:IPR013838" + /translation="MRDIKELKNAFGQADEDFINNVYHTLTDIRSKKDGKHAKKIYFR + LVAVITIVCILSAGTALAFTNTWGILDFLSGRSTNVKVLPEASSIVQKVVPQEGNKTD + IAAFTVREAVYDGQSVYIVLDVKPTSSNYLLLGPDAYPSDQIENMGPTFSGQSGTIAD + YARKNNKVMFQTSVGISEANCSISYLLEKDGTLVYMLEGRYEGDSTVPDVEFKCVAIP + FVMENGKYTVDTDSRNDTTLSVTLKNTGTKELVTSKEPAVYGKCGVRVDKITLKSSAM + STYAEVEFTVLDEKKYAETDGMLFEFLDRYGEGIPSGAASGGGIEAIDGTHYIEKISL + QAMEKLPREVILRGYSFLDKNQYETHTFEMK" + gene complement(2545205..2545876) + /locus_tag="Ccel_2175" + CDS complement(2545205..2545876) + /locus_tag="Ccel_2175" + /inference="protein motif:PFAM:PF07729" + /note="PFAM: regulatory protein GntR HTH; GntR domain + protein; + KEGG: cth:Cthe_3159 GntR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL76517.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011711" + /translation="MAKLGYDESDNLVNSLRGRVFNKLRKQILTGAYKPGDSLIELRL + SEELGVSRTPIREAIRQLELEGLVTSIPNKGAVVKGVTDQDVEDIFTIRTMIEGLAAR + WAAEKITEEEIVELKEALEFEEFFTIKNDAEHLMKYDSRFHDIIFRACKSRPLMHMLS + TFHHYIQNARNNSFETPGRPAKALDEHRAIFEAISRKDGETAEKLTVEHIRNASRIFH + QKHQK" + gene complement(2545933..2547861) + /locus_tag="Ccel_2176" + CDS complement(2545933..2547861) + /locus_tag="Ccel_2176" + /inference="protein motif:TFAM:TIGR01342" + /note="TIGRFAM: aconitate hydratase; + PFAM: aconitate hydratase domain protein; + KEGG: cth:Cthe_3158 aconitate hydratase" + /codon_start=1 + /transl_table=11 + /product="aconitate hydratase" + /protein_id="ACL76518.1" + /db_xref="InterPro:IPR000573" + /db_xref="InterPro:IPR001030" + /db_xref="InterPro:IPR006250" + /translation="MGLNLAQKIIKNHLVSGEMVAGSEISIKIDQTLTQDSTGTMAYL + QFEAIGIPRVKTKKSVAYIDHNTLQAGFENADDHKYIQTVTSKHGVYFSKPGNGICHQ + VQLERFGVPGMTLLGSDSHTPTGGGIGMLAIGAGGLDVAVAMGGGPYYLTMPKVCKVE + LKGQLNPWSTAKDIILEVLRVMSVKGGVGKVVEYAGEGIKTLTVPERATITNMGAELG + ATTSIFPSDDVTLKFLKAQGREQDWVELLPDADAVYEEHIVIDLSTIEPMAAKPHSPD + NVEKISSIGKIKVDQVAIGSCTNSSYMDMMKVAAILKGKTINPNVSLVIAPGSKQVLT + MLAQNGALADMVAAGARILESACGPCIGMGQAPCSDAVSLRTFNRNFEGRSGTTSAKV + YLVSPEVAAASALTGVLTDPRELGEAPKIEMPKEFVINDNLVIEPAPEGSNVEVVRGP + NIKPFPLNKALSDKVEGKALIKVGDNITTDHIMPSNAKLLPFRSNVPYLAEFCLTPCD + PEFPERAKANGGGFIIGGSNYGQGSSREHAALAPLQLGIKGVIAKSFARIHMANLINS + GIIPMTFENEADYDTIDMNDELVIGNAIEQVKNADTIVVKNLTKNTQFNVKVTLSDRQ + VQMILAGGLLNYTKVNNG" + gene complement(2547976..2549349) + /locus_tag="Ccel_2177" + CDS complement(2547976..2549349) + /locus_tag="Ccel_2177" + /inference="protein motif:PFAM:PF00682" + /note="PFAM: pyruvate carboxyltransferase; + KEGG: cth:Cthe_3157 pyruvate carboxyltransferase" + /codon_start=1 + /transl_table=11 + /product="pyruvate carboxyltransferase" + /protein_id="ACL76519.1" + /db_xref="InterPro:IPR000891" + /translation="MIEFNKKSNTLEQTQYKYALQDISEPNLYRDIYNYDDVPKCAFN + HRKVPMYPADEIWITDTTFRDGQQSRAPYTVEQIVKLYKYLHQLGGPKGLIRQTEFFL + YSDKDKEAVYKCMELGYDFPEITSWIRASKSDFKLAKEMGMKETGFLVSCSDYHIFRK + LKMTRKQAMENYLSVIKEAINVGIRPRCHLEDITRADFYGFVIPFALELRKLMDESGV + PIKIRACDTMGYGVSYPGVALPRSVPGIIYGLKHHAGFPSELLEWHGHNDFYKAVSNS + STAWLYGCSAVNCSLLGIGERTGNTPLEAMVFEYASLRGTTDGMDTRIITEIAEYYEK + ELDYEIPPRTPFIGKNFNVTQAGIHADGLLKDEEIYNIFNTDKLLNRPIGVAITQTSG + LAGIALWINNYFRFRGNDLIDKKDERVGKIKEWIDAQYQAGRITSISNNEMLKGIREI + APDIIPS" + gene complement(2549674..2550823) + /locus_tag="Ccel_2178" + /note="ribosomal slippage" + CDS complement(join(2549674..2550543,2550545..2550823)) + /locus_tag="Ccel_2178" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76520.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSASRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 2551002..2552249 + /locus_tag="Ccel_2179" + CDS 2551002..2552249 + /locus_tag="Ccel_2179" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: cth:Cthe_3156 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76521.1" + /db_xref="InterPro:IPR004089" + /translation="MKKTEERKSTNLYGIGALVSIVLCVIGGIISGKAVFAVYTFFAC + LASCITFIILSGLQYKKTIKRFSTDIDGFKSGDFSRMIEPKQYGILGFVASVVNLVIS + DIRSLVESFFNLSLSITQASRKVTSTAENASTAIEEISKTIDEIAKGASSQAAEAQMG + VQVVDKLSDQINFVYESYTGITNETNKIIDLNTVGLKAVTTLRDKSKETYETSEKIFA + VVEKLTNTTKDIGLFVESIENIAEQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLA + DQSRKSTEEINNMMESIQEESALAISSMEIMKKVSQEQNFAVDKTNSSFSDIANAIDF + IVSKINDVNEAVIKMQTDKSEVISSIENISSVSQQTAASSEEVAATTENQLKVIDEMK + IASESLNQLVKQLDNKLKKYKLR" + gene complement(2552340..2553599) + /locus_tag="Ccel_2180" + CDS complement(2552340..2553599) + /locus_tag="Ccel_2180" + /inference="protein motif:TFAM:TIGR00877" + /note="TIGRFAM: phosphoribosylamine/glycine ligase; + PFAM: phosphoribosylglycinamide synthetase; ATP-grasp + domain protein; + KEGG: cth:Cthe_1245 phosphoribosylamine--glycine ligase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylamine/glycine ligase" + /protein_id="ACL76522.1" + /db_xref="InterPro:IPR000115" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR013650" + /translation="MKVLVVGGGGREHTIVWKLSQSPKISKLYCAPGNGGISGLAECV + PIKAMDMDEIVKFSKENKVDMVVVAPDDPLAAGLVDKLTEAGVRAFGPVKAAAIIEGS + KAFSKDLMKKYNIPTAGYMVFDNCTEALQYLDTCSAPIVVKADGLALGKGVIIAKTIQ + EAREAVKGMMNDKIFGEAGSRVVIEEFIQGPEVSILAFTDGKTIVPMVSSQDHKRVFD + NDQGPNTGGMGTFSPSPLYDKKLNDYCMKEIFTPTVEAMNKEGRKFKGVLYFGLMITK + DGPKVLEYNARFGDPETQVVLPRLKTDLLVIFEAIIDERLCDIHIKWDDNSAVCVIAA + SGGYPRKYSTGLEISGIDNAEANGETIVFHSGTSCKDGKYYTAGGRVLGVTAVESTMD + KAIEKAYAGIEKIQFEGMHYRKDIGRK" + gene complement(2553672..2555216) + /locus_tag="Ccel_2181" + CDS complement(2553672..2555216) + /locus_tag="Ccel_2181" + /inference="protein motif:TFAM:TIGR00355" + /note="TIGRFAM: phosphoribosylaminoimidazolecarboxamide + formyltransferase/IMP cyclohydrolase; + PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme + formylation region; + KEGG: cth:Cthe_1246 bifunctional + phosphoribosylaminoimidazolecarboxamide + formyltransferase/IMP cyclohydrolase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylaminoimidazolecarboxamide + formyltransferase/IMP cyclohydrolase" + /protein_id="ACL76523.1" + /db_xref="InterPro:IPR002695" + /db_xref="InterPro:IPR011607" + /db_xref="InterPro:IPR013982" + /translation="MIKRALISVSDKTGIVEFASALASKGIEIISTGGTAKALSAAGL + KVINISDITGFPECLDGRVKTLHPKVHAGLLAIRSNEEHMKQIKELGVETIDMVIINL + YPFKQTILKGNVELEEAIENIDIGGPTMLRAAAKNYQDVAVIVDPADYKNVLNEMNES + GDVSVKTKFRLAYKVFEHTSHYDTLIAKYLRDTLGDIDFPETLSLTYEKAQDMRYGEN + PHQKAVFYKEVGANTGLLPSAVQLHGKELSFNNINDTNGAIELVKEFDEPTVVAVKHT + NPCGVGSADNIYDAYMRAYESDPVSIFGGIIAANREIDAKTAEEINKIFVEIVVAPSF + TEDALAVLTQKKNVRLLKLENITDEISPDAYDMKKVAGGLLVQKYNSQLFNQEDLKCV + TDVQPTKEQMEDLVFAMKVVKHTKSNAITLAKGKMTIGVGPGQTNRIVPTKVSIEYAG + ERSQGAVMASDAYFPFSDCVEAAAAAGIKAIIQPGGSIRDQESIDACNKYGIAMVFTG + MRHFKH" + gene complement(2555247..2555870) + /locus_tag="Ccel_2182" + CDS complement(2555247..2555870) + /locus_tag="Ccel_2182" + /inference="protein motif:TFAM:TIGR00639" + /note="TIGRFAM: phosphoribosylglycinamide + formyltransferase; + PFAM: formyl transferase domain protein; + KEGG: cth:Cthe_1247 phosphoribosylglycinamide + formyltransferase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylglycinamide formyltransferase" + /protein_id="ACL76524.1" + /db_xref="InterPro:IPR002376" + /db_xref="InterPro:IPR004607" + /translation="MLNIGILVSGGGSNLQAIIDKVECGYIKNVRIVTVVSSRPDAYA + LERAKKHGIKGICISRKNFSNIEEYDEALISHFKGFEVDLVVMAGFLSILGERFTRAY + KGRVINIHPALIPSFCGKGFYGIIPHQKVLEAGIKVTGATVHFVELEADAGPIILQKA + VCVEDDDTPETLQRRVMEQAEWEILPEAIRLFAENKLVVEGRKVKII" + gene complement(2555864..2556886) + /locus_tag="Ccel_2183" + CDS complement(2555864..2556886) + /locus_tag="Ccel_2183" + /inference="protein motif:TFAM:TIGR00878" + /note="TIGRFAM: phosphoribosylformylglycinamidine + cyclo-ligase; + PFAM: AIR synthase related protein; AIR synthase related + protein domain protein; + KEGG: cth:Cthe_1248 phosphoribosylformylglycinamidine + cyclo-ligase" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylformylglycinamidine cyclo-ligase" + /protein_id="ACL76525.1" + /db_xref="InterPro:IPR000728" + /db_xref="InterPro:IPR004733" + /db_xref="InterPro:IPR010918" + /translation="MTTYREAGVDVEAGYEAVKLMKNHVKRTFRPEVMTELGGFGGLF + SLDKEKYEQPILVSGTDGVGTKLKIAFLTDKHDTVGIDCVAMCVNDIICSGAEPLFFL + DYIAVGKNYPEKVAAIVKGVAEGCVMSGCSLIGGETAEMPGFYPVDEYDLAGFTVGIV + DKKKIINGKTIKAGDKLIGLPSSGIHSNGYSLVRKLINPTENNLKEYVEKLGCTLGEE + LLKPTKIYVKTIMDIIGKYEIKGISHITGGGFIENIPRMIPDGLRAQIQKGSWPVLPI + FDLLRDLGNMADKDIFNTFNMGIGMIMAVDAQKADEIISYLDSKGEKAYVIGSISEGE + DGVDIC" + gene complement(2556922..2558385) + /locus_tag="Ccel_2184" + CDS complement(2556922..2558385) + /locus_tag="Ccel_2184" + /inference="protein motif:TFAM:TIGR01134" + /note="TIGRFAM: amidophosphoribosyltransferase; + PFAM: glutamine amidotransferase class-II; + phosphoribosyltransferase; + KEGG: cth:Cthe_1249 amidophosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="amidophosphoribosyltransferase" + /protein_id="ACL76526.1" + /db_xref="InterPro:IPR000583" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR005854" + /translation="MCNFGDCMKCSNPDCFDERMDKMHEECGVFGVYSLDGNEIDVAG + LTYYGLYSLQHRGQESAGIAVSDRETIVFHKDMGLVPEIFDKILLNHLKGTMAVGHVR + YSTTGASRRENAQPIVVRSRNGQLALAHNGNIINASILREQMENSGTIFQTTNDTEVL + INLITKHSITSETLEEAVEKMMVDVKGSYGLILMTAQKMVGARDPNGIRPLCIGKTAG + AYVLASESCALDAVNAEFIRDVEPGEIVIIENNEIRAIRPFNKKDTKLCIFEFVYFAR + PDSVIDGASVQQSRYEAGKRLAIEHPVEADVVIGVPDSGISAAIGFSNQTGIPYSEGL + VKNRYVGRTFIQPSQGMREVAVRIKHNAIKKSVEGKRVVIIDDSIVRGTTTRRIVQIL + KKAGAKEVHMRVSSPPIKFPCYFGIDISSRKELVADKLSVEEIRQMICADTLGYLSLE + GLLKTPIGSKLGFCSACLDGNYPIEVPEEGDKFSCGC" + gene complement(2558467..2558985) + /locus_tag="Ccel_2185" + CDS complement(2558467..2558985) + /locus_tag="Ccel_2185" + /inference="protein motif:TFAM:TIGR01162" + /note="TIGRFAM: phosphoribosylaminoimidazole carboxylase, + catalytic subunit; + PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate + (AIR) carboxylase; + KEGG: cth:Cthe_1250 phosphoribosylaminoimidazole + carboxylase, catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="phosphoribosylaminoimidazole carboxylase, + catalytic subunit" + /protein_id="ACL76527.1" + /db_xref="InterPro:IPR000031" + /translation="MCISKDAKVAVIMGSDSDLSVMKSCIKVLKDFEIDCQVMVCSAH + RTPDKAAQFAKNAEADGFDVIIAAAGKAAHLPGVLAAYTPLPVIGVPVKSSTLDGLDS + LLSIVQMPAGIPVATVAVDGAENAALLAIQILSVAYHELRHKMIDYKKSLQEKVEKKN + AELQKKLLEIVQ" + gene complement(2559150..2560127) + /locus_tag="Ccel_2186" + CDS complement(2559150..2560127) + /locus_tag="Ccel_2186" + /inference="protein motif:PFAM:PF03547" + /note="PFAM: Auxin Efflux Carrier; + KEGG: cth:Cthe_1252 auxin efflux carrier" + /codon_start=1 + /transl_table=11 + /product="Auxin Efflux Carrier" + /protein_id="ACL76528.1" + /db_xref="InterPro:IPR004776" + /translation="MDQIQIITNQIIILTLLGLTGFAAGKTGFLPENSHKYISALILK + ITMPFLIFTTMGNYSFTRETLTNGLYIFILGIAFILIAGLIALGQCKVLRIKEKTKNI + YVAQSMFGNVIFMAYPLLKAMYGDIGIVYAIFFNIANDAILWTLGIYLFNRHNTRNWK + DNLLHLINPNTLAFLGGIAMIFLKFQFRIEKTYVFTKVWSIFYDAFNGLGHTTIYLSM + IFIGLILSSIKVTSVNEMITKLKYFVLSLFKLLIVPFAAILFFKVTKGVFNPFVVRIV + VLQLAMPASTIVSALALQYDSDYNAATEGIFVSTILSIFTLPFIVYLLG" + gene complement(2560316..2560603) + /locus_tag="Ccel_2187" + CDS complement(2560316..2560603) + /locus_tag="Ccel_2187" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76529.1" + /translation="MEFLIPLSLCVVALFILYLVIKSAIDGSETAKEIRQIRMILQKQ + YGKALKQIKQTDNDYEVMDIPYYTCPACGANVKPENNTCPSCGLNLNGKNE" + gene 2560995..2562644 + /locus_tag="Ccel_2188" + CDS 2560995..2562644 + /locus_tag="Ccel_2188" + /inference="protein motif:PFAM:PF01471" + /note="PFAM: NLP/P60 protein; Peptidoglycan-binding domain + 1 protein; + KEGG: cpy:Cphy_1886 peptidoglycan binding + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Peptidoglycan-binding domain 1 protein" + /protein_id="ACL76530.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR002477" + /translation="MSLKKIKSLIKDIPKKIKNYKSKYPSKYKYIIISFSGTAALALT + VAIASSLPPSNSDFVASGKQESTASVSNQTNIQKYSKSSSESTAFNKTSRGKVPLNPL + KGDIITLGVKDITVTVIQKRLMELDYLEIDEPTDEFGEPLQFAIELFQRKNKLPITGE + VDAKTYELLLSEDAKAYTVSLEAEGTDVQQLQERLYELGYINKVTGYFGSDTDTAVKE + FQKRNGLYDDGNVGKQTREIMYSANAVPMSFYLGDENGEILQYKQRLYELGYLTAKPS + GKYNNDTVLAVKRFQENNGLISDGYIGPVTKDLLMSADATENALDIGDNGEDVTKVQT + YLMKLGYLKGVTGYFGSDTHNAVLKFQSRNGLGQDGKVGSQTIAKLLSSDARKWTGGS + NGGSNSNSSGGSSNSGGGSNSSGGSNSGGGNGGSFVSPSVERLISVARSKLGSRYIYG + AKGPNTFDCSGFVYWVLKNSGVRQGYMTSGGWAGNSRYRRISSMSSIKRGDIITYNGH + VGIALGGNQMIDASSSQGRVRITNITSSYWKRNFICAYRIF" + gene complement(2562773..2563813) + /locus_tag="Ccel_2189" + CDS complement(2562773..2563813) + /locus_tag="Ccel_2189" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: amt:Amet_0590 alcohol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL76531.1" + /db_xref="InterPro:IPR002328" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MKNRAAYMTEINKMEIRDIEVPKLREKDVLVKLEYVGICGSDVH + YLEHGKIGDFIVNGDFILGHECAGTVVEVGSGVQDLKVGDKVALEPGITCGQCEFCKT + GRYNLCPDVEFLATPPYHGSLMNYIAFPENMCFKLPDNITTKEGALVEPLAVGMHAAN + QGEVKLGSSVVILGAGTIGLVTLLACKANGATDITVVDVIPKRLEYAKNLGATKTINA + AEADVFAEIDKLTDKKGVDVVIETAGTARTISQTPYMVKNGGNIVLVGLAPQDIIEFN + FAKIMAKEATIKSVFRYKNIYPIAIKAISKGIIDITGIVTHEFNFDDVANAFDYVINN + KQDVVKAVIKID" + gene complement(2564058..2565182) + /locus_tag="Ccel_2190" + CDS complement(2564058..2565182) + /locus_tag="Ccel_2190" + /inference="protein motif:PFAM:PF00480" + /note="PFAM: ROK family protein; + KEGG: cbt:CLH_2695 ROK family protein" + /codon_start=1 + /transl_table=11 + /product="ROK family protein" + /protein_id="ACL76532.1" + /db_xref="InterPro:IPR000600" + /translation="MATKVNSIEVKKINRNAIYNFLYKHEPISIQEIAYTLNMSLPTV + TQNIKELQERGLVIETGLFESTGGRKAKAISYNSSAKYSVGLDITRNHVSIVVIDLSG + KLLKNLRIQYPFNNHKEYFKGVGDLVTKLVSEVGIDESNMLGVGIALPAILSDDRQTV + SYATVIDFRGGSINSFQEFIPYDIILSNDANAGGFAEMWHEDANENVAYLSLNNSVGG + SIIIAKNIYDGQNQRAGEFGHMTIVPNGKECYCGQKGCVDAYCSAKILSDSTNGNIAE + FFRLLKTNKEPQRSLWNEYTSHLIVAINNLRMLFDCKVILGGYAGAYMDEYIDELRQK + VAKCNTFEVDGNYLHACKYKLEATAVGAALAHVDQFIKNV" + gene 2565453..2566163 + /locus_tag="Ccel_2191" + CDS 2565453..2566163 + /locus_tag="Ccel_2191" + /inference="similar to AA sequence:KEGG:SSA_1346" + /note="KEGG: ssa:SSA_1346 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76533.1" + /translation="MYIHNRLLALIFRLLFLFGCGIGLYLNSGIPGGKFAPYMLVFYT + IQSNALCFVFFSILAVKTLIDIKTKGIRGSTHIFPHLKGAVTMTISMTFIVYHFILVP + LYISNDVSYKILNWQNILVHYFVPIMTVLDWLLFDKKQNFRWFDPMLWIFVPISYFIF + IIIRAKIGGIIDIVQSKYPYFFVDVDILGWINVLKYAGVFILGFLVLGYVIYLVDKIK + FKFTLENIGCNSVVKEAN" + gene complement(2566166..2566726) + /locus_tag="Ccel_2192" + CDS complement(2566166..2566726) + /locus_tag="Ccel_2192" + /inference="protein motif:PFAM:PF00929" + /note="PFAM: Exonuclease RNase T and DNA polymerase III; + SMART: Exonuclease; + KEGG: ava:Ava_B0286 exonuclease" + /codon_start=1 + /transl_table=11 + /product="Exonuclease RNase T and DNA polymerase III" + /protein_id="ACL76534.1" + /db_xref="InterPro:IPR006055" + /db_xref="InterPro:IPR013520" + /translation="MLIFVDFEATCWDKNEKYKQPHAEIIEIGAVATGKDLKEIGKFS + AVVKPTIEPLLSDYCKELTGLSQTDVENGIEFNRAIDLFYQWIIQYQDTDTPILYTWG + NYDGFLLKRNLRRHRNKNKDFLKIIQKGGVANLQEKFLEFTKLPCSSCSLTKALQIIG + EDYRGIKHRSINDAANMIKLYKYLGS" + gene complement(2566720..2567340) + /locus_tag="Ccel_2193" + CDS complement(2566720..2567340) + /locus_tag="Ccel_2193" + /inference="similar to AA sequence:KEGG:CLC_1041" + /note="KEGG: cbh:CLC_1041 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76535.1" + /translation="MKIRKFFMDPVKEEKWINQMLKEGKELVHSTGSTYYFIEQSNPN + VIIKSDYRHFKSRNDFQDYLLMFEDSGWMHIKGTKYSGVQYFKKTNCSEADDIFSDTP + SKAEKYKRMADVWLTLVLAYISITIVFINNGYINLRAFLYPQELYYTPGLWDMTGMRF + WKAFMFETPFAMCRGFSWLVFPIIILFYGYFYFKLHRVYKREKNIC" + gene complement(2567358..2567678) + /locus_tag="Ccel_2194" + CDS complement(2567358..2567678) + /locus_tag="Ccel_2194" + /inference="protein motif:PFAM:PF03551" + /note="PFAM: transcriptional regulator PadR family + protein; + KEGG: cth:Cthe_1491 PadR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, PadR-like family" + /protein_id="ACL76536.1" + /db_xref="InterPro:IPR005149" + /translation="MNLDKYLPLTETTLYILISLNEPGHGYIVMQKVEELSNGKVRIA + AGTMYGALENLTKQKLISILDVGDKRRKVYEITWLGKMVLQQETNRLAHIISVAGKYG + YKIT" + gene complement(2567794..2568633) + /locus_tag="Ccel_2195" + CDS complement(2567794..2568633) + /locus_tag="Ccel_2195" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: pdi:BDI_2325 RNA polymerase ECF-type sigma + factor" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76537.1" + /translation="MKKLEQSILKIANGDNNCLKFLYDELNQAVYTLSYIILKDRYLA + EDVSQEVFVIGLTDKENQKILPINIKNYVLDENLNMRITNLEFSNSCVSLNIKKPHAY + TLLNPKIRNKEIKQEHYAIGQRIDETDNKDEGIYAFTFGPLESNNVNDYELVINTPRI + FTFKEPLNVSFDLNLDNRPNEILLHQKTYVESALIKSINVYQMSLMVKMSKPITQPIS + IKYKDGTILKEIGATISSPTQNDESSNYCAMFDSTIDYSREPVLIIGNTSVPLYERNL + VRD" + gene complement(2568830..2570563) + /locus_tag="Ccel_2196" + CDS complement(2568830..2570563) + /locus_tag="Ccel_2196" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_3222 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76538.1" + /translation="MRTRMLLQRKQEQTSDVGSKNKHSRLDLKKSKPPKPNVRTVDPK + NLIRIFLTDPYSVTHEEFSFLQSTIGYRQAVKLLEEGKQSKKMEKAGLINTGVKGSLI + KKEQDSTVNTKPAVVQKKDSVSQESQKDSKGISFNKGLPANLKDGLEKLSGFNLSDIS + VHTNSDKPEQVGALAYTQGKDIYIAPGQEQHLAHEGWHAVQQKQGRVSPTLQMKTGTL + VNDDAELEKEADSVGSKAVVQGSMEADNIGGKALNQSGQTRQHKESVIQRSSTKNKAK + VGPSNGKIVTKLSNRDFLKIFDKGTNTTYYGGDQDWYDRYTQKFGGCGPTAAANILAY + MAMTNPELKKLYKYNTNTINKKDFSDFMKEVYKYVTPDEVPGIRLVSDFIGDNEDIFD + KYSISKHAKDKYLDIPPSVGISNVTDFAKGVEKFAKRKGVNLKAHWSDKRLTLKSAVS + YIREALEKDCPVALLNVFQPVDMKWRDPKTLKFFNTIYEQHWVVVTGIIEDTRTGEVE + LEVSTWGGMATISLNSLYDKDIKEQFLSLIFPLGIIYFEYEPVKPGPTPRPAPTPPIK + KMILVIDINKG" + gene complement(2570718..2571524) + /locus_tag="Ccel_2197" + CDS complement(2570718..2571524) + /locus_tag="Ccel_2197" + /inference="similar to AA sequence:KEGG:CD0474" + /note="KEGG: cdf:CD0474 putative iron-sulfur protein" + /codon_start=1 + /transl_table=11 + /product="putative iron-sulfur protein" + /protein_id="ACL76539.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MSSKIFYFSGTGNSLAVARELSKNLSDKGSIIPLSIYRNEETAQ + IDTDVLGLVFPVHFMNIPDIVKCFIKKLTFKSNPYIFAIATCNGTSGASLIELNKCLD + RKGKVLSSGFVIYMPGNALVTPDDIEIERLKNYKPKVTEISTTINNRSTNKIDEKDSL + KTYILSAICKSLGKRLYLTPKNVSYTSQCVGCGICKKVCHLNNIEMINKRPHWGNECS + TCLACFHWCPKKAVKGGKMLNKRGRYHHPQISIEDMELKIKLESATWRKS" + gene complement(2571599..2572003) + /locus_tag="Ccel_2198" + CDS complement(2571599..2572003) + /locus_tag="Ccel_2198" + /inference="protein motif:PFAM:PF09278" + /note="PFAM: regulatory protein MerR; Transcription + regulator MerR DNA binding; + KEGG: plu:plu4700 zinc-responsive transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MerR family" + /protein_id="ACL76540.1" + /db_xref="InterPro:IPR000551" + /db_xref="InterPro:IPR015358" + /translation="MKYYLRGEIAKIAGINVETLRYYEKNKLIPIPNRTSKGYRLYSE + DILIILSFIKSAKSAGFTLEQIRNLFSAVNGLHIDLNYVEELIDEKLVEISDKIIELK + SVEEDLKYIKENLYQPHECPLCNAFNNNSGKK" + gene complement(2572167..2572979) + /locus_tag="Ccel_2199" + CDS complement(2572167..2572979) + /locus_tag="Ccel_2199" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76541.1" + /db_xref="InterPro:IPR001584" + /translation="MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRET + YGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTRKKFKATTNSNHNYPVADNILNQ + DFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ + AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRAEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(2573027..2573311) + /locus_tag="Ccel_2200" + CDS complement(2573027..2573311) + /locus_tag="Ccel_2200" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76542.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene 2573771..2574082 + /locus_tag="Ccel_2201" + CDS 2573771..2574082 + /locus_tag="Ccel_2201" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76543.1" + /translation="MKSTKKTIGFIAVLLISLSMSINVFAYETRVPYYAEVTSVYNVL + LGAWSEPVSTTSYRTINVPDGFTLRLVDQNTSTTYEPVGVVAIIKKVTTVWNWQLFGN + N" + gene complement(2574335..2575870) + /locus_tag="Ccel_2202" + CDS complement(2574335..2575870) + /locus_tag="Ccel_2202" + /inference="protein motif:TFAM:TIGR00884" + /note="TIGRFAM: GMP synthase, large subunit; GMP synthase, + small subunit; + PFAM: glutamine amidotransferase class-I; GMP synthase + domain protein; + KEGG: cth:Cthe_0375 bifunctional GMP synthase/glutamine + amidotransferase protein" + /codon_start=1 + /transl_table=11 + /product="GMP synthase, large subunit" + /protein_id="ACL76544.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR001317" + /db_xref="InterPro:IPR001674" + /db_xref="InterPro:IPR004739" + /db_xref="InterPro:IPR006220" + /db_xref="InterPro:IPR011702" + /translation="MNNEMILVLDFGGQYNQLIARRVREANVYCEVIPYNASLERIKS + YNAKGIIFTGGPNSVLDEGAPKCDPGVFELGIPVLGICYGMQLMSVMLGGSVTAANQR + EYGKVEICVDKSQPLFRDVDENTICWMSHTYYVDTPPKGFEVIAKSANCPTGAMQHVE + KNLYAVQFHPEVMHTPKGKEMLKNFLYNICGCKGDWKMSSFVENSINAIREKVGDKKV + LCALSGGVDSSVAAVLIHKAIGKQLTCIFVDHGLLRKYEGDQVEQIFRKQYDINLIRV + NCEDRFLQRLKGVSDPETKRKIIGEEFIRVFEDEAKKIGKVDFLVQGTIYPDVIESGI + GDAAVIKSHHNVGGLPEHVDFKEIIEPLRSLFKDEVRRAGEELGIPEDLVWRQPFPGP + GLAIRVIGDLTKEKLDTLRDTDYIFREEIKAAGLDKEINQYFTVLTNMRSVGVMGDER + TYDYALALRAVTTTDFMTADWARIPYDILEKVSTRIVNEVKQINRIVYDITSKPPATI + EWE" + gene complement(2575989..2576933) + /locus_tag="Ccel_2203" + CDS complement(2575989..2576933) + /locus_tag="Ccel_2203" + /inference="protein motif:TFAM:TIGR01212" + /note="KEGG: cth:Cthe_0370 putative radical SAM protein; + TIGRFAM: conserved hypothetical protein; + PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76545.1" + /db_xref="InterPro:IPR005911" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MLYNKFSDYLKKRYGSKVYKLPLNLPVTCPNRDGSLSLSGCIFC + GEEGAGFENLSCTMSVSQQLAKNARYIGKNYGSDIFIAYFQNYSNTYLPFEEFKKNIY + EACREGIVAVYISTRPDCISDRYMELLADIKKEKGVDIVIELGLQTVNYNSLKILQRG + HTLAEFIDAVVRIKNYDLEACAHYITDLPTDNIEDVIEGAKILSALGVQQVKCHSLYI + LKDTVLEKMYSQGKIVPVTMDEFIDRTIAFLEYLNPQIVVQRLIGRAPAERTVFCNWS + TSWWKIQDVIEGKMTENGSHQGRLFDYLNGSALKRFKD" + gene complement(2576920..2578218) + /locus_tag="Ccel_2204" + CDS complement(2576920..2578218) + /locus_tag="Ccel_2204" + /inference="protein motif:PFAM:PF01969" + /note="PFAM: protein of unknown function DUF111; + KEGG: cth:Cthe_0369 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF111" + /protein_id="ACL76546.1" + /db_xref="InterPro:IPR002822" + /translation="MRVLYFDCFSGISGDMTLGALLDLGIDKTAFLSELGKLKVSGYS + IEINKMVKNGIRGTDVRVILEGTEHHENSEDHQYGEPHQYDHHHHGEHEHNDEHNHSH + NSERNLEDIERIINQSDLRPRVKSMSNKIFREIARAEAKVHGKEINEVHFHEVGAVDS + IVDIVGSCICLDMLGIERIFASELHEGKGFVKCAHGILPVPVPTVLEMLCSSEIPLIT + EDIPFELVTPTGLGIIKMISSGFGKMPPMSIEKTGYGMGKRETGRFNALRVVMGSLYQ + QDILPNDEISILETNIDNMSPEIMGYTMEKLLDSGALDVYYTPIYMKKSRPSAMLTVL + VKCGEEKKISDIIFSETSTLGIRISHSQRFCMDREFVKVNTQYGDVRVKVANLGDIMK + FAPEYEDCRSIALKTGMPIKKVYELVNEKYRQEGYDIAVQ" + gene complement(2578293..2579039) + /locus_tag="Ccel_2205" + CDS complement(2578293..2579039) + /locus_tag="Ccel_2205" + /inference="protein motif:PFAM:PF00731" + /note="PFAM: + 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) + carboxylase; + KEGG: cth:Cthe_0368 NCAIR mutase (PurE)-related protein" + /codon_start=1 + /transl_table=11 + /product="1-(5-phosphoribosyl)-5-amino-4-imidazole- + carboxylate (AIR) carboxylase" + /protein_id="ACL76547.1" + /db_xref="InterPro:IPR000031" + /db_xref="InterPro:IPR000834" + /translation="MNSNDLKKLLEDVKNGFVDVEHAYKEIKALPYEDLGFAKVDHHR + AIRNGYPEVIYCEGKTVKQIVEIVERLMEKNNNILATRASREVFDAISEITCEAEYHE + DARIVVIKRRKILVSEKEIAVITAGTSDIPVAEEAAITAEVLGNKVNRIYDVGVAGIH + RLLSKMDAISRANVIIVVAGMEGALASVVGGLVDKPVIAVPTSVGYGANFGGLSALLT + MLNSCASGIGVVNIDNGFGAGYLASNINKL" + gene complement(2579056..2580178) + /locus_tag="Ccel_2206" + /note="ribosomal slippage" + CDS complement(join(2579056..2580102,2580104..2580178)) + /locus_tag="Ccel_2206" + /inference="ab initio prediction:Prodigal:1.4" + /ribosomal_slippage + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76548.1" + /translation="MLELEEYKLELQGLKSNLEEMRASLDIARISDEIAELEHKASEP + EFWNDMENSQKILQKTKILKTKIERFNNITSQWEDLFTLAELGLEEQDESVIPEVGEG + LVQLKNNLESLRLETLLTGPYDKNNAILTLHAGAGGTEAQDWVQMLLRMFTRWGEAKG + YEVKILDYLDGDEAGIKSVTIHVIGENAYGYLKSEKGVHRLVRISPFDSSGRRHTSFA + SLDVMPELDDTIEININPDDLRIDTYRASGAGGQHINKTDSAIRITHIPTGVVVSCQT + ERSQFQNKDTAMKMLKAKLFELKEREQKEKIEDLKGVQMDIAWGSQIRSYVFCPYTLV + KDHRTNYEEGNVDAVMDGELDGFINAYLSVGKTDNITKP" + gene complement(2580247..2581068) + /locus_tag="Ccel_2207" + CDS complement(2580247..2581068) + /locus_tag="Ccel_2207" + /inference="protein motif:TFAM:TIGR00099" + /note="TIGRFAM: Cof-like hydrolase; HAD-superfamily + hydrolase, subfamily IIB; + PFAM: Haloacid dehalogenase domain protein hydrolase; + sucrose-6F-phosphate phosphohydrolase; Haloacid + dehalogenase domain protein hydrolase type 3; + KEGG: csc:Csac_1293 Cof-like hydrolase" + /codon_start=1 + /transl_table=11 + /product="Cof-like hydrolase" + /protein_id="ACL76549.1" + /db_xref="InterPro:IPR000150" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006379" + /db_xref="InterPro:IPR006380" + /db_xref="InterPro:IPR013200" + /translation="MYRLVAIDLDGTLLDKNKEISERNKIAIHMAKEKGVKIVICSGR + VYSGARIYAKQLGIMDPIIACNGAIIRENADGKVIYSNYMHTDDCLKILDIFHENSIY + FHVYAGETMLTERLDYNSLKYYERNKALHAKDRVEIDIVTDMEKRLKELDGKVLKLVA + VSDDSELLATVRKKLSIVETVDVTSSNYNNFEVVNKGVNKGKALERLSNMLKIPYREI + IAIGDNENDIPMFDFAGLGVAMGNGEDCAKEAADYITATNTEDGVAKAIEKFILG" + gene complement(2581102..2582265) + /locus_tag="Ccel_2208" + CDS complement(2581102..2582265) + /locus_tag="Ccel_2208" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aromatic amino acid beta-eliminating + lyase/threonine aldolase; aminotransferase class I and II; + KEGG: cpr:CPR_0701 aspartate aminotransferase" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class I and II" + /protein_id="ACL76550.1" + /db_xref="InterPro:IPR001176" + /db_xref="InterPro:IPR001597" + /db_xref="InterPro:IPR004838" + /db_xref="InterPro:IPR004839" + /translation="MIMKDMILDKIKKVPPSGIRKYFDLINEMTDVISLGVGEPDFIT + PWNIREAGIYSLETGHTQYSSNAGFIELREEISKYLNNKFDLHYNPENEILVTVGGSE + GIDAALRALVGPGDEVIIPEPSFVAYKGCTGFTGATPVTIELKQEDDFKLTAKQLEAA + ITDKTKVVIIPFPNNPTGAIMGREDLYELVQVLKDKDIVVLSDEIYCELTYEGKHTSI + ASFPEMKDRTLVINGFSKSYAMTGWRLGYACGHKDLINEMKKIHQYAIMCAPTTAQDA + AIEALRNSENDVKMMAKEYNRRRRVAIDGFRKAGFSCYEPKGAFYVFPCIKKTGLSSE + DFCEKLLIEQKVLVVPGTAFGECGEGYVRACYASSMENINEAMKRIKQFADKY" + gene complement(2582262..2582741) + /locus_tag="Ccel_2209" + CDS complement(2582262..2582741) + /locus_tag="Ccel_2209" + /inference="protein motif:PFAM:PF01037" + /note="PFAM: regulatory protein AsnC/Lrp family; + KEGG: cth:Cthe_0362 AsnC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AsnC family" + /protein_id="ACL76551.1" + /db_xref="InterPro:IPR000485" + /translation="MEEILEILERNSKTTADEIAVMLGLPSEEVEAAIKQYEADNVIV + GYSTLINWDKTQKEKVTALIEVKVTPQRGLGFDKIADRIYKYPEVTACYLMSGGFDLT + VIIEGRTMKEVALFVSEKLAPIESVLSTSTHFVLKKFKDKGTIFEEKSVDRREQIFL" + gene complement(2583169..2583609) + /locus_tag="Ccel_2210" + CDS complement(2583169..2583609) + /locus_tag="Ccel_2210" + /inference="similar to AA sequence:KEGG:Cthe_0361" + /note="KEGG: cth:Cthe_0361 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76552.1" + /translation="MSGEKIFSTSLFGYNKSDVNSYLEKINKEYGDKLKNKEREIIEI + KAQYRDLKNKYDEISTNLAEIKENRERVANALITAQEQAKNIIEEAKKKAIDEKKTLE + QQVEKEKEKLVDIKQELKILKVEVVDTLKKYEGQLSNFIKEENP" + gene complement(2583765..2584091) + /locus_tag="Ccel_2211" + CDS complement(2583765..2584091) + /locus_tag="Ccel_2211" + /inference="protein motif:TFAM:TIGR01068" + /note="TIGRFAM: thioredoxin; + PFAM: Thioredoxin domain; + KEGG: cth:Cthe_0360 thioredoxin" + /codon_start=1 + /transl_table=11 + /product="thioredoxin" + /protein_id="ACL76553.1" + /db_xref="InterPro:IPR005746" + /db_xref="InterPro:IPR006662" + /db_xref="InterPro:IPR013766" + /db_xref="InterPro:IPR017937" + /translation="MSDKINNISKDSFESNVLKSDKPVVVDFWASWCGPCRMVAPIME + ELADEFNGKASIAKVNVDEEGELAAQFRIMSIPTVMVFKGGEAVEKIVGARSKAEFSE + LIQKHL" + gene complement(2584174..2585220) + /locus_tag="Ccel_2212" + CDS complement(2584174..2585220) + /locus_tag="Ccel_2212" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ckl:CKL_2814 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76554.1" + /translation="MKNIAKWYKWILLAVIFQFGILLYMNNVFLSTDIDVSVSENSAV + RRKPSTGDFKVPAEAQMISTSFNAKFGAYLHDGELHIVDIDKGKSKTVAGTGKDKITY + FRWLPDRDMVIYSSDTKNGRNGTVQVSTYEADSETSRDYPELSGLPAKSQVKDIELSP + YTNMVYAKIQTSDTRARVIRFNVMGQYARIMTVDSSIIIKECTYTNKLIYQEKGQQIN + IYDGIKKANSRVPINVNNVTVLGIDLNDTLYIGALDDNGMVTQIYSQKIEDNSDLTDN + WAKMNLKETALPENVIVTGNGNLYINKKDENRVINLKNGLKASYRGEFIEILEGVLVS + KDENKVNITSLKEY" + gene complement(2585235..2586275) + /locus_tag="Ccel_2213" + CDS complement(2585235..2586275) + /locus_tag="Ccel_2213" + /inference="similar to AA sequence:KEGG:CKL_2815" + /note="KEGG: ckl:CKL_2815 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76555.1" + /translation="MNYDTISLNEKQVKTIQKKSAKKKKKKKGRLRSLLGFLIFEFFF + MSITTPLLIFYGPFENVKRTATGMVWNSMTKQVIAKTFLSDKAIAKILGDGYAISNIN + TEDIKMLDFRVKHNNNLEYFDVESRNFKGKMIIVDDPTRIKVGYSSKMPRSGETTSSI + ARRNGAVAAINGGGFIDKGWAGTGGVAIGFVISNGKYISGKLTNNYTKRDTIAFTKDG + MLIVGKHSQAELAKYNIKEGISFGPPLIVNGKPTINKGDGGWGISPRTAIGQKEDGSV + MLLVIDGRSLKSFGATLKEVQDIMLEHGAVNAANLDGGSSATMYYDGKVVNTPSDALG + ERTVATAFVVMP" + gene complement(2586461..2586829) + /locus_tag="Ccel_2214" + CDS complement(2586461..2586829) + /locus_tag="Ccel_2214" + /inference="similar to AA sequence:KEGG:Cthe_0359" + /note="KEGG: cth:Cthe_0359 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76556.1" + /translation="MEIVWTGLYSLTHGNASLEAYTSLWMFFIYGSAVFLEPLHDIIR + NWNIFLRGIIWVVIIWGIEYTTGKILLNILHVYPWRYYGRFAVEGLVRIDYAPAWFIA + GLLFERIHKTLDRVVLRRKM" + gene 2587053..2589614 + /locus_tag="Ccel_2215" + CDS 2587053..2589614 + /locus_tag="Ccel_2215" + /inference="protein motif:TFAM:TIGR02094" + /note="TIGRFAM: alpha-glucan phosphorylase; + PFAM: glycosyl transferase family 35; + KEGG: cth:Cthe_0357 alpha-glucan phosphorylases" + /codon_start=1 + /transl_table=11 + /product="alpha-glucan phosphorylase" + /protein_id="ACL76557.1" + /db_xref="InterPro:IPR000811" + /db_xref="InterPro:IPR011834" + /translation="MYLVGKINVISTLPEKFKRLNDIAYNLWWTWNPEAIDLYREIDL + ELWEKVDKNPVRFLQEVSQKKLQGKLLDVEYLTRLDKVIASFDSYMSEKNTWFSQNHS + ELTDKNVAYFSAEYGLSEVLPIYSGGLGVLSGDHCKSASDLGIPFTAIGLFYKQGYFS + QRINKEGWQETCFNDLNISQLPMLPALNSNGEQVRINITFAGRTVYAIVWKVQIGRIN + LYLMDTDVAENSPADRSLTSRLYGGDQETRIQQEIFLGIGGIRVLDALGIQANVYHMN + EGHSSFMGLELIRKLINEKHLNFSEAMEVVANSSIFTTHTPVPAGNDVFPLFMMDKYF + GDFWGQLGLSRHDFFELGLKKPEDQNFNMTVLALTLAGRKNGVSRLHGAVSRKIFGDV + WPEVPEDDVPITYVTNGIHTLTWLSPKIKDLYDKYLETDWKKKIYSKETFTGIDSIPD + EELWATHVELKNKLITFVRDRLKKQKLANGESMESVRQVDSFLDPNALTIGFARRFAT + YKRANLIFRNLARIQKILNNPERPMQIIFAGKAHPADGPAHDVIKNINDIAKMEGFYG + KVILLENYNMTVARNLVQGVDVWMNNPRRPLEASGTSGQKVCINGVINFSILDGWWCE + GYNGENGWVIGDESEFDNEHIQDNTDSESIYDTLEQNIIPLFYNVNEKGVPTEWVRIM + KNSISSLAWNYSTDRMVKEYTGRMYVPAITGSSRICADNYSLARSMSGFRDHLNLNWP + NVQLFAEKSSGDLKNYKTDSCQEIYLSSTVCLGNIDPANVIAEVYYGTLSNGKIENAQ + VAEMHCDEKTGEGTYRYSINLKIDDGGEYGYTFRITPKHEYLINRFDTGLIKWIK" + gene complement(2589674..2590228) + /locus_tag="Ccel_2216" + CDS complement(2589674..2590228) + /locus_tag="Ccel_2216" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76558.1" + /translation="MKSNIKKTLALVFTLIILCLTLLSACSESKESNVLGDAGKSAKE + VAGSGQVNVRLYKYEVGVTDKPAQTELFVFGKDKLESDTLNVLNEVFSSDELSLLNAT + IDWDNKCITADLPPKVATLLETNKRLADTLTHEFVVTLQNIPGIEKVVLTVQGKKDSV + GKYHDFKGTFVKTGEITFKKDIEK" + gene 2590471..2590812 + /locus_tag="Ccel_2217" + CDS 2590471..2590812 + /locus_tag="Ccel_2217" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76559.1" + /translation="MPWNNEFTIENEYGVLTTYSGEGISWYPNGDNSSPDAHITMLED + GSFHVSVPRQNGRFNSHIYFYIRGKAGPQEIQHVDEENVPEDYKIDGRIDLTPYLELA + QRFWASAWYEE" + gene complement(2590892..2591863) + /locus_tag="Ccel_2218" + CDS complement(2590892..2591863) + /locus_tag="Ccel_2218" + /inference="protein motif:TFAM:TIGR00241" + /note="TIGRFAM: CoA-substrate-specific enzyme activase; + PFAM: ATPase BadF/BadG/BcrA/BcrD type; + KEGG: cth:Cthe_0354 putative CoA-substrate-specific enzyme + activase" + /codon_start=1 + /transl_table=11 + /product="CoA-substrate-specific enzyme activase" + /protein_id="ACL76560.1" + /db_xref="InterPro:IPR002731" + /db_xref="InterPro:IPR008275" + /translation="MGRVKCFMGIDVGSVSTNITLIDENNNLLEKLYMRTDGQPIESI + RTGLKDIYERLGKSIEIAGVGATGSGRQLAAAIVGADVVKNEITAHAVAAQKDIPDVR + TIIEIGGQDSKIILLKNNVVHDFAMNTVCAAGTGSFLDRQAARLGITIEDFGSYAVRS + ESPVRIAGRCAVFAESDMIHKQQMGYSREDIVRGLCDALARNYLANLGKGKKLEAPVV + FQGGVAANIGIIQAFERALGTKIVIPENHDVMGAYGVAILAHEGLGSSYGKTGFVGFD + RLMGDYTAKSSECDGCSNGCEIVQIIMDNSPVACWGDRCGKWSGAAV" + gene complement(2591832..2592947) + /locus_tag="Ccel_2219" + CDS complement(2591832..2592947) + /locus_tag="Ccel_2219" + /inference="similar to AA sequence:KEGG:Cthe_0353" + /note="KEGG: cth:Cthe_0353 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76561.1" + /translation="MIFTFPHLGNTYIIAKAFLDDFGAEYVVPPINNDKTLEIGLKYC + AEAHCLPFKLFVGNMVQAYEMGADTMLITGGCGPCRLGYFGEMLKKQVQDIGIKMDLI + TLEVPDQGLKELASRIRKVSRTSNVLNIARVINAAKNVAVKLDSLEQLAREKRSVQRV + RGSVDKIYQAFQRDVLDVKGSEQIINFIKETEDKLNRVDVNMDLKPLRVGIVGEIFTT + IEPYANFRVEKMLGEMGVMVTRPVTVSGWIINEMIKKKLPFLKDSKHEEAAKTYMPHM + IGGHAQHTVGNSVLNALHGYDGVIHLYPLGCMPEIVSQAILPKIEEDYGIPIMTVIRD + EMTGEAGFATRIEAFIDLLKKRRDEHLNGQSKMLYGN" + gene complement(2592901..2593881) + /locus_tag="Ccel_2220" + CDS complement(2592901..2593881) + /locus_tag="Ccel_2220" + /inference="similar to AA sequence:KEGG:Cthe_0352" + /note="KEGG: cth:Cthe_0352 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76562.1" + /translation="MKRVGIPRGLYYHKYSALWESFFKNLGADVIVSDITNKKILTNG + SNACVSEACIPIKAYFGHVIELIGKVDYLFMPRFTSVARRQYICPEVCGVTDMVRNSV + KELPKIIDTEINLRESRKNSWNAALYTGEFLTGDRKKISRAYKDAVNEYKSKRRALKF + ADTEFGASPAKDNLKIAIIGHSYTVYDTFLNMELMKKLNKYGASVVTLDMLDYLVSKD + SCKELDKQFFWDYGTRAYGGAIQLIKNGRIDGILALTSFGCGVDSFVDELVEDKIRKD + SDIPFMKLVLDEHSAEAGFLTRLEAFIDMIVRRRDNDFYISTSGKHLYNS" + gene complement(2593951..2596944) + /locus_tag="Ccel_2221" + CDS complement(2593951..2596944) + /locus_tag="Ccel_2221" + /inference="protein motif:PFAM:PF02638" + /note="PFAM: cell wall hydrolase/autolysin; protein of + unknown function DUF187; + KEGG: bce:BC2392 FenI" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF187" + /protein_id="ACL76563.1" + /db_xref="InterPro:IPR002508" + /db_xref="InterPro:IPR003790" + /translation="MNKKIGVVCILLVFLMILPIAGYKLFSDRNYDGNVSNAQTVSKI + EDLRGVWIASVSNIDFPSKPGISAEKQKKELDDIISNAQYMGLNAIFFQIRPTGDALY + KSTIFPWSAYLTGKQGKENDNGFDPLAYIIEQAHKKGIQIHAWINPLRLSMGTTSNPT + GNINVLSDNHPARKIPEAVVAAPTGQLYLDPGNPAAIKLITDGVAEIVKNYDVDGIHF + DDYFYPSKSEGKGVDFNDSASYAKYKGSFKNKDDWRRNNINTLVKSTYNTVKNIKPSV + QFGISPFAIWSNKDRNKEGSDTQGGISTYYDHYADSKKWVKEAYIDYIAPQIYWNIGF + KVADYSVLVNWWKNVCRGTKVKLYVGHAAYKINDTTQSNDWLDPLQIPKQIAYNRKSN + SVDGSIFYGYSKLKNNTLGIKDKLKGIFVSGRDPGSTVPEDRQLYIASPSNGYKTSSS + RISIMGGGDPDQPIYLNGKKIETSSNGYFTVYMDLKVGENKFVFKHKGKETVLKITRN + TKTTSSPYKMTKAEFRNGYFSPTQSMTMQTGKKITFSCQAPAGAKVWVEIGGYKAELK + QTATVDANKGTLTPAKYSGTFTMPSVSGKERTKSLGKPVFVMEYNGKRITSEQSNIIS + VQSSKYYKYAVVNTSDAEAVARSGPSTDYSRITPLINGAADYIVGQQNGFYLLKSGVW + TATSNVKVINDKAIATNKVSSVTLKSNGSYTDISFKMPVNTVFGVKSASNTLKLTLYN + TSGMSVNKSIPSDAPFSSIGYKAVSGGAQYTFQLKSEGNYFGYYAEYKNGSLVFSMKN + APKISKSGSKPLKGLKVVLDAGHGGSESGAIGPMGRYGLYEKQVNLGITLNARKYLQS + LGATVVMTRTSDKTVSLNDRANLIRKEKPDIAVSIHNNSMDVTADYTKHTGLLVLYSK + DSSKVVAGYIKDQLVADLKRRDDGYRWQSLSVCTVTQSPAILIEGGFMSNPAEYEWLA + DYDNQVKIGNSVGKAIENWAYANAR" + gene complement(2597164..2598099) + /locus_tag="Ccel_2222" + CDS complement(2597164..2598099) + /locus_tag="Ccel_2222" + /inference="protein motif:TFAM:TIGR01859" + /note="TIGRFAM: ketose-bisphosphate aldolase; + fructose-1,6-bisphosphate aldolase, class II; + PFAM: ketose-bisphosphate aldolase class-II; + KEGG: cth:Cthe_0349 fructose-bisphosphate aldolase" + /codon_start=1 + /transl_table=11 + /product="fructose-1,6-bisphosphate aldolase, class II" + /protein_id="ACL76564.1" + /db_xref="InterPro:IPR000771" + /db_xref="InterPro:IPR011289" + /translation="MPLVTSAEMFKKAYEGGYAIGAFNVNNMEIVQGITEAAKEVNAP + LILQVSAGARKYANHTYLMKLVEAAIAETGLPICLHLDHGDTFELCKSCIDGGFTSVM + IDGSHHSFEDNIALTKQVVDYAHARGVVVEAELGRLAGIEDAVNVSEADAAFTNPAEV + EEFVTKTGVDSLAIAIGTSHGAYKFKPGTKPQLRFDILEEVSKRLPNFPIVLHGASSV + IPEFVDMINNNGGKMPDAIGIPEDMLRQAAKMAVCKINIDSDLRLAMTGSIRKYFNEH + PDHFDPRQYLKPAREAIKGLVKDKIVNVLGCDGKA" + gene 2598411..2599658 + /locus_tag="Ccel_2223" + CDS 2598411..2599658 + /locus_tag="Ccel_2223" + /inference="protein motif:PFAM:PF00365" + /note="PFAM: phosphofructokinase; + KEGG: cth:Cthe_0347 6-phosphofructokinase" + /codon_start=1 + /transl_table=11 + /product="phosphofructokinase" + /protein_id="ACL76565.1" + /db_xref="InterPro:IPR000023" + /translation="MTVLKGAAIFGQSGGPTSVINASACGVFQEALKQDAITAVYGAA + HGIKGILDEKFYDMSKEDAYELDLLKTTPSSALGSVRYKLKSADEDETDYKRLVEVFK + KYNIRYFFYNGGNDSMDTCNKVSKYMQKVGYECRVMGVPKTIDNDLFGTDHCPGYSSA + AKYIATSTMEVYHDARVYNTGMITILEVMGRNAGWLTAATALAAYKGAGPDLIYLPEI + DFDMDQFLTDCIRIYKETGNCIVAVSEGIKDKNGKYISEYGSDLAQQKDSFGHSQLGG + LAATLAAIVKEKTGAKVRGIEFSLLQRCAAHCGSARDVEESYMSGQMAVKYAVEGMTD + KMVGFKRAEGSEYKCEIQLLDLSDVANTEKKIPREWINEAGNGLKQEFVDYALPLIQG + ESAPPKEDGLPRFAKLKKVLATK" + gene 2599994..2602222 + /locus_tag="Ccel_2224" + CDS 2599994..2602222 + /locus_tag="Ccel_2224" + /inference="protein motif:TFAM:TIGR01255" + /note="TIGRFAM: formate acetyltransferase; + PFAM: formate C-acetyltransferase glycine radical; + pyruvate formate-lyase PFL; + KEGG: drm:Dred_0039 formate acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="formate acetyltransferase" + /protein_id="ACL76566.1" + /db_xref="InterPro:IPR001150" + /db_xref="InterPro:IPR004184" + /db_xref="InterPro:IPR005949" + /translation="MRLNISDFKPGKWQNSIDVQDFIQTNYTPYDGDGSFLCGASSKT + RQLWETCRSLLVEEHLNGGILDIDTETVASINSHKPGFIDEKYEVIKGLQTDTPLKRA + FLAKTGYRMAKQACQQFDAAPSPEFDKIFSKSIKTHNDGVFSAYTNEMRKARRCGVIT + GLPDTYGRGRIIGDYRRVALYGTDVLISQKQKDLDSLIGTMTDGVIRLREEIQDQIAA + LNDLAVLGGSYGFDMKRPALNAFEAVQWTYLAFLGALKETNGAANSLGRLNVFFDIFI + QRDINNGILTEEDAQELIDQFVIKLRFIRHLRTKEYNELFAGDPVWLTESLGGMSSDG + RHMVSKTSFRFLQTLKNLGAAPEPNLTILWSVKLPENFKKFCAEISIVTSAIQYENDD + LMQPQYGDDYGISCCVSAMRLGKDMQFFGARCNLAKLLLLSLNGGRDEISGDQVAPEI + KPYEGEYLEYEKVMKNFLELQDWLTGLYVDTMNIIHYMHDKYAYERLMMALHDTDVNR + LMAFGISGLSVLVDSLSAIKHTRVRVVRDQRGIITDFELEGSYPQYGNNDDRADCIAK + EVVTSFYNSLKAHPTYRNATHTLSILTITSNVVYGKKTGSTPDGRKKGEPFAPGANPM + HNRDKSGILAMMNSVASIPYNVCSDGISLTLSVIPNALGKARETKISNLSALIDGYVM + SSGHHINVNVLDKETLENAIKEPMKYNQLTVRVSGYAVHFVKLTKAQQLEVLSRTFHE + AM" + gene complement(2602307..2602894) + /locus_tag="Ccel_2225" + CDS complement(2602307..2602894) + /locus_tag="Ccel_2225" + /inference="protein motif:PFAM:PF01613" + /note="PFAM: flavin reductase domain protein FMN-binding; + KEGG: cth:Cthe_0343 flavin reductase-like, FMN-binding" + /codon_start=1 + /transl_table=11 + /product="flavin reductase domain protein FMN-binding" + /protein_id="ACL76567.1" + /db_xref="InterPro:IPR002563" + /translation="MAKQVWKPSTMLNPVPVVMVSCTDKEGKPNIITLAWTGTINSDP + PMVSISVRKERYSFELIKEKGEFVINLPTKKLAFATDYCGVKSGRDIDKFKEMGLTAE + AASKVGVPLIKECPLNLECIVKQSIELGSHVLFLAEVVATNVEETLLDEKGKLDLSKA + ELICYSHGEYYPLGKPLGYFGYSVTKRKNLKRNQK" + gene complement(2602977..2604752) + /locus_tag="Ccel_2226" + CDS complement(2602977..2604752) + /locus_tag="Ccel_2226" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; glycoside + hydrolase family 9 domain protein Ig domain protein; + KEGG: sus:Acid_2606 cellulase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL76568.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR004197" + /translation="MNWKNTIISLTLAGSFIFTMSSCTSKPVSSNVPEVTNQAVTSMS + QDLKAENEISDDVHVNQLGYKTLSKKIAVIKGQYKKFQVVDSKTGVAVLTGDLTGNPK + DESSGDTVCYADFSKITVPGKYFISISGLGKSYDFLIDDNVYSKLGDAMLKALCYQRC + GTALTPDFAGEYSHAECHKTLAKFYNDETREIDVSGGWHDAGDYGRYVVPATVTVAGL + LLAYEFYPQVFTDAVRIPESGNKIPDVLDEAKYGIEWLLKMQDSESGGVYHKVTSRVF + PEMTTMPDKDVDNQLVMSISTNATADFAAVTAMASRIYVTIDPVFSQNCLQASQKAWE + WLEKNKDFVSFKNPSDVASGEYGDSSGKDEKAWAAAELFRATGNEKYNEYFTDNYQIE + GFGLGWQNVSGFAAIAYMFSDVSGTDQKKVDEIKKAWLDKADMFASTGQKDGYLVAMH + KMEYNWGSNMNVATHAMHLLISDRLKTDDKYIHTAEDCTHYLLGRNTLNQSYITGFGS + KQVKKPHHRPSAADLALNPVPGLMVGGPDSALEDDVAKSKLSGKFPAECYIDDINSFS + TNEVATYWNSPVIFILGYLNSNRLL" + gene complement(2604892..2606358) + /locus_tag="Ccel_2227" + CDS complement(2604892..2606358) + /locus_tag="Ccel_2227" + /inference="protein motif:PFAM:PF03403" + /note="PFAM: Platelet-activating factor acetylhydrolase + plasma/intracellular isoform II; + KEGG: bce:BC1813 carboxylic ester hydrolase" + /codon_start=1 + /transl_table=11 + /product="Platelet-activating factor acetylhydrolase + plasma/intracellular isoform II" + /protein_id="ACL76569.1" + /db_xref="InterPro:IPR005065" + /translation="MRLFEIVLIIINFFTLGWLLFSKKNSKKVSCILFGISFVTTLIQ + IFAEGYRIQVLPAYICLPLNVLIFFLKGRKPRKTWKFVLGSIFSFLYLLIAVALPALL + PVFSLEKPTGPYQVGTVTYDWTDENRLEEATKDPSDKRELMVQVWYPAEKTDNLKRAP + YIKDLSAILKGGEKTVPLVSFLLSHLKYVKSNSYTDAKLSGKQEKYPLLIFSHGYGAF + RNANTFEVEELASQGYIVVGIDHTYDAAATVFSDGRVAELNQDTQKMFYSGSVDAMDK + HNEIWVKDVEFVLDTVEKINKKDPLNHFTGKIDLDKIGMFGHSYGGATTAQVLMRDPR + VKAGINMDGYLYGSSIPDTGVSKPFMMMDADDSMKMFLDKDYLDKSLKRYGITGDLRK + RYEKSSIKYGKIRSNAIANGGYSMLIKNTDHTSFSDMYLLSPLAKIGRENPRTVFKII + NDFTLTFFNKYLLGDSSASLEDTAKKYKNIEFTQTKHN" + gene complement(2606389..2607609) + /locus_tag="Ccel_2228" + CDS complement(2606389..2607609) + /locus_tag="Ccel_2228" + /inference="protein motif:PFAM:PF03403" + /note="PFAM: Platelet-activating factor acetylhydrolase + plasma/intracellular isoform II; + KEGG: bce:BC1813 carboxylic ester hydrolase" + /codon_start=1 + /transl_table=11 + /product="Platelet-activating factor acetylhydrolase + plasma/intracellular isoform II" + /protein_id="ACL76570.1" + /db_xref="InterPro:IPR005065" + /translation="MSLYSTVKFVVEAPFSLLMPLFHLQEPTGPYKVGTITYDWTDSS + RREEKCSGADVKRELMVQVWYPAENTENLKKAPYIKDAPEIIRGLEKYYFIKPFLLRK + LKDVQTHSFINAQLSSKSVKYPVLIFSHGMVGSRNQNTFQAEELASHGYIVVAVDHPY + YAVATVFSDGRVAESTISTDVNSSDFSLEYGDRNNETWVKDIQFVLDKLEEINNKGND + NLFLGKFDMERIGIFGHSYGGATAAQVLLKDSRVKAGINMDGAFYGSDIPESGIEKPF + LLMLSEQYMMSTDLEKAEKKLKMFGIKGEKLKEYLELYAEYERRRKKAMAGGAYSLII + KKTTHLSYSDVYLYTPLMAIIHKPKKIHKVINDFSLIFFNKYLMEDSTASLENAAHKY + NNVEIAGTKKELVS" + gene complement(2607744..2609024) + /locus_tag="Ccel_2229" + CDS complement(2607744..2609024) + /locus_tag="Ccel_2229" + /inference="similar to AA sequence:KEGG:Cbei_4038" + /note="KEGG: cbe:Cbei_4038 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76571.1" + /translation="MDVLQRYEHIQTVRSEYFQSLLQGAAKEGIIGSDQVKKIQVGLL + GLLSRQIEKYTSGESSSVTAESAESLLKSICFSISVALKCHGNIVIASELLERESIEE + LFKKGNELIRYYYEDARRLWIKIKTEGTKVRNLAYNDTVYKGLKNFFDWYDYRFYAHE + MNGSLDYPLSYDEMDLKGIEYIHEYVTHLDMENVLCSSYDAQSIECLMRGYSKNYRED + LINVFELVLTNLIGRSMLGYKLDRLDISEEDKEWLLIQLKNVEESVLVQKMEQAFYEV + LSFIKVESQATIDYFKITLKNIISRVKHSIKLGKLDKVFITLYEGEDETSISGYIDGN + KMEDGDLRVLIDEMKDCRFLDDKIAMVLQSIKSLDDLSEVLNECFFEGEYESVFKLLA + KQEIQELKKRIIENKTDLDSLYDWEDTFLKFAAD" + gene complement(2609052..2609522) + /locus_tag="Ccel_2230" + CDS complement(2609052..2609522) + /locus_tag="Ccel_2230" + /inference="similar to AA sequence:KEGG:Cphy_0280" + /note="KEGG: cpy:Cphy_0280 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76572.1" + /translation="MKDFLQIQKILSQKESEINQIEKCNEFSSKFSLVLTNVQIQTLS + EERYKTLKRYGRVELGKGILDKLIYEFCDSPFIWQENYMDTLSELQDIFYYFKNESLD + EFTDDELIRYMKKSFDNQCQGSIEYLRETSLEDVCRSIRYGQEAYKYFDSYDDE" + gene complement(2609799..2610263) + /locus_tag="Ccel_2231" + CDS complement(2609799..2610263) + /locus_tag="Ccel_2231" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL76573.1" + /db_xref="InterPro:IPR002686" + /translation="MILMANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREI + LIRLCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKY + KFGNRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene complement(2610529..2612277) + /locus_tag="Ccel_2232" + CDS complement(2610529..2612277) + /locus_tag="Ccel_2232" + /inference="protein motif:TFAM:TIGR02512" + /note="TIGRFAM: hydrogenase, Fe-only; + PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding + domain protein; iron hydrogenase small subunit; + hydrogenase large subunit domain protein; 4Fe-4S + ferredoxin, iron-sulphur binding, conserved site; + KEGG: cth:Cthe_0342 hydrogenase, Fe-only" + /codon_start=1 + /transl_table=11 + /product="hydrogenase, Fe-only" + /protein_id="ACL76574.1" + /db_xref="InterPro:IPR001041" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR003149" + /db_xref="InterPro:IPR004108" + /db_xref="InterPro:IPR013352" + /db_xref="InterPro:IPR017900" + /translation="MSTVNITIDGKKLQVEQGITILEAARQANIKIPTLCFLKDINEI + GACRMCLVEIKGARALQASCVYPVAEGLEIYTQSPDVREARKVTLELILSNHDKKCLT + CVRSKNCELQNLAEELNIKDIRFEGASIDLPLDDFSPSIVRDPNKCVLCKRCVSMCKN + IQTVSVISAAERGFKSTISCAFDRSLEEVPCTMCGQCISVCPVGALREKDDTDKVWSA + LADKELHVVVQTAPAVRVALGEEFGLPIGTRVTGKMAAALNHLGFAKVFDTDTAADLT + IMEEGTELLNRIKNGGKLPVITSCSPGWIKFCEHNYPEFLENLSSCKSPHEMFGAVLK + TYYAEKMGIDPKKIFVVSVMPCTAKKFEAQRPELSATGLPDVDVVITTRELARMIKEA + GIDFNNLEDMDFDDPMGNATGAGVIFGATGGVMEAALRTVSEIVAGKSFEDIEYTAVR + GIEGIKEATVAIGDMKVKAAVANGLGNARKLLDSIKAGEAAYDFVEIMACPGGCVNGG + GQPIQPSSVRSWTDLRTERAKAIYEEDVSLPIRKSHENPVIKEMYDKYFGEPGSHKAH + EILHTHYAARENYPVK" + gene complement(2612296..2614089) + /locus_tag="Ccel_2233" + CDS complement(2612296..2614089) + /locus_tag="Ccel_2233" + /inference="protein motif:PFAM:PF01512" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; Respiratory-chain NADH dehydrogenase domain 51 + kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, + conserved site; + KEGG: cth:Cthe_0341 NADH dehydrogenase (quinone)" + /codon_start=1 + /transl_table=11 + /product="Respiratory-chain NADH dehydrogenase domain 51 + kDa subunit" + /protein_id="ACL76575.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR001949" + /db_xref="InterPro:IPR011538" + /db_xref="InterPro:IPR017900" + /translation="MQLYRAHVLVCAGTGCTSSNSLKIIDEMESLLVSNRLDSEVQIV + KTGCFGLCAEGPIVVVYPEGAMYTRVEISDVKEIVEEHLLKGRIVKRLLAGEKEADDI + SKSLEGVDFFNRQMRIALRNCGRINPEDINEYIAFDGYKALEKVLTEMTPEAVIDTMK + KSGLRGRGGGGFPTGVKWEFAAKQTADQKYVCCNADEGDPGAFMDRSVLEGDPHSVIE + AMSIAGFAIGATQGFIYVRAEYPIAVKRLQLAIDEAKEYGILGDNVLGTGHKFNLEIR + LGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANVPVIIL + KGAEWFSGIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREVVYDIGGGIPNGKKFK + AAQTGGPSGGCIPASHLDTPIDYDSLIALGSMMGSGGLIVMDEDNCMVDIAKFFLEFT + VDESCGKCPPCRIGTKRMLEILERITEGKGEAGDIEKLELLAKNIKASALCGLGQTAP + NPILSTLKYFRDEYEAHVFDKKCPAGVCKSMMKYTVDASKCKSCGICAKACPMGCIKG + EKKVPYVIDNSKCAKCGVCIEKCPFKAISKG" + gene complement(2614136..2614507) + /locus_tag="Ccel_2234" + CDS complement(2614136..2614507) + /locus_tag="Ccel_2234" + /inference="similar to AA sequence:KEGG:Cthe_0340" + /note="KEGG: cth:Cthe_0340 ferredoxin" + /codon_start=1 + /transl_table=11 + /product="ferredoxin" + /protein_id="ACL76576.1" + /translation="MKSIAELDEIRIKTLNQLSIRCNEKGIKVVVAMATCGIAAGARP + VMKAFIEEINQRNLNNVTVSITDCIGVCKLEPVVEILDKDGKKVTYVNMTPEKAQRVV + LEHIVNGNVCTDLTIDARENV" + gene complement(2614491..2615057) + /locus_tag="Ccel_2235" + CDS complement(2614491..2615057) + /locus_tag="Ccel_2235" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + KEGG: cth:Cthe_0339 histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76577.1" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR013838" + /translation="MRDLSLHILDIVQNSITAQATKIKIHISIDSQRDYLLLNVSDNG + AGMDSDLLLKAQDPFFTSRITRKVGFGIPLLIESAKKCNGNFNIISEKNEGTHIIAEF + SINHIDRLPIGEIGETLVAAISSNPQISFILELNSGKGFFRLDTDEVAKTLGNVSITV + FAVLKWLKEYIDEGIKNIFGGVLNEVDS" + gene complement(2615082..2615573) + /locus_tag="Ccel_2236" + CDS complement(2615082..2615573) + /locus_tag="Ccel_2236" + /inference="protein motif:TFAM:TIGR01958" + /note="TIGRFAM: NADH-quinone oxidoreductase, E subunit; + PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; + KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E + subunit" + /codon_start=1 + /transl_table=11 + /product="NADH-quinone oxidoreductase, E subunit" + /protein_id="ACL76578.1" + /db_xref="InterPro:IPR002023" + /translation="MSENRCCCGCTDENSLKLGKIIDKYKGTRGALIPVLHEVQEVYG + YLSEDVLKEISEKLNVSLAEIYGVVTFYTQFSLNPKGRFKINICMGTACYVKGSGEIL + EKFKEKLGIDVGQCTEDGKFSLDACRCIGACGLAPVIMINDDVHGRLLPDDVEAILEK + YKD" + gene complement(2615770..2617800) + /locus_tag="Ccel_2237" + CDS complement(2615770..2617800) + /locus_tag="Ccel_2237" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cac:CAC1600 methyl-accepting chemotaxis-like protein + (chemotaxis sensory transducer)" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76579.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MNIRKKLTIFVAGLAVLSILVTQLFSFYKSYGIIVTQTNTMAKD + LSSAYAENISNMIDTEKSVVSLLASHTSIIELLEQSQSGEQTEQDDHLKGDCMALLKN + AEKNKSNIEHVYIVNTEHVIISDTRHTTLGKNLSDRPYSIQTLSEGKPVISDVITSEE + TGKNVSEFTYPVRNADGNLLGYVATTVYMDSFSSVIEDKKILGTKSSYVFLADKSANI + VYHPDKNKIGKPVETPQIKNIINRPGDKKADVINYDYKGDKKIAAYETISNTGWLLVL + TGTIDEVIAPVTTMANFVLRLSIIMILFVSAVGYLISISISKPIEKITHIIHKTSKLD + FKYDNSFERYLKSKDEIGTISRAISEMREIMHKMADKLIVVSERINNNAQQVSNLADD + VKMDSQENSATTQELSAGVEESAASTEEISASITEVENNVNAIAQRTREGAYISNQIT + ERALKLKEDALKSSDNAKSIYEDVKQKIEKSIEQSKSIQQINLLADTILQITDQTNLL + ALNAAIEAARAGESGKGFAVVADEIRKLAEQSSQTVGSIQRMVEEVNQAVKNMNENSA + SILSFVDEEVLTDYEKLIDISEQYNNDSNLVNGLMTEFIRTSEELNTTITNVSTAINE + VAQTVVESARGIENIAIKTSSIVVKAEEVHEKASENLGSAKELYDIVSKFEL" + gene complement(2618033..2618320) + /locus_tag="Ccel_2238" + CDS complement(2618033..2618320) + /locus_tag="Ccel_2238" + /inference="protein motif:PFAM:PF06949" + /note="PFAM: protein of unknown function DUF1292; + KEGG: cth:Cthe_0154 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1292" + /protein_id="ACL76580.1" + /db_xref="InterPro:IPR009711" + /translation="MNGEERDDIVVLLGEDGEEVEFEHLDTIEMDGSEYVILLPLDDQ + ENEEVDEVVILKIEHDKDGEDSFITVDDEEELNKVFEEFKTRMEDEYDFDE" + gene complement(2618414..2618842) + /locus_tag="Ccel_2239" + CDS complement(2618414..2618842) + /locus_tag="Ccel_2239" + /inference="protein motif:PFAM:PF03652" + /note="PFAM: Holliday junction resolvase YqgF; + SMART: Resolvase RNase H domain protein fold; + KEGG: cth:Cthe_0153 Holliday junction resolvase YqgF" + /codon_start=1 + /transl_table=11 + /product="Holliday junction resolvase YqgF" + /protein_id="ACL76581.1" + /db_xref="InterPro:IPR005227" + /db_xref="InterPro:IPR006641" + /translation="MRILGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRL + SEIINEYSVTDIVIGYPINMNGTKGPRTERTEEFIKKISDLGQFNIIKWDERLTTVSA + HRTMNELGIKASKKKGIVDTMSAVLILQGYLDRIAGNKKS" + gene complement(2618907..2619173) + /locus_tag="Ccel_2240" + CDS complement(2618907..2619173) + /locus_tag="Ccel_2240" + /inference="protein motif:PFAM:PF06135" + /note="PFAM: protein of unknown function DUF965; + KEGG: cth:Cthe_0151 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF965" + /protein_id="ACL76582.1" + /db_xref="InterPro:IPR009309" + /translation="MGINETMMFKVDNEKENEAKEILVSVHQALKEKGYNPINQMVGY + ILSGDPTYITNYKNARSIVRRLERDELLEEVLKFYLENHNNEPE" + gene complement(2619292..2620656) + /locus_tag="Ccel_2241" + CDS complement(2619292..2620656) + /locus_tag="Ccel_2241" + /inference="protein motif:TFAM:TIGR00089" + /note="KEGG: cth:Cthe_0150 RNA modification protein; + TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like + tRNA modifying enzyme; + PFAM: Radical SAM domain protein; Protein of unknown + function UPF0004; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="RNA modification enzyme, MiaB family" + /protein_id="ACL76583.1" + /db_xref="InterPro:IPR002792" + /db_xref="InterPro:IPR005839" + /db_xref="InterPro:IPR006467" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR013848" + /translation="MEDNYNEIIDENLNNDGIYRKKKTVSFHTLGCKVNQYESEAVSS + IFEKNGYEVVSFEQDSDVYIINTCTVTNLSDRKSRQAIRKAKKTNPNSIVIVMGCYAQ + TSSEEVLKIPGVDMVIGTKDRSRIIEYVERIESGECRINAVDNIMVSGTFEELKLSTY + KERTRAYLKIQEGCSQFCSYCIIPYARGPIRSRKPDDIIEEVKHLAESGFLEIVLTGI + HLASFGREIKDTNLLDIIKKTHSIDGIKRIRLGSLEPTTITEEFVDAVGRLPKLCPHF + HLSLQSGCDKTLAEMNRKYRTDEYRKSVELLKNNIPDVAITTDLMVGFPGETEEDFLM + SRDFAEEIGFSKIHVFKYSPRKGTPAAVMKNQIGPEEKERRSEIMLDLSDELEKKYME + GFVGRNMEVLYEQEMQGKEGYIEGLTKNYIRVMAKGDSNLKGKLMETKLYKVNGTLFE + GNII" + gene complement(2620833..2621102) + /locus_tag="Ccel_2242" + CDS complement(2620833..2621102) + /locus_tag="Ccel_2242" + /inference="similar to AA sequence:KEGG:Cphy_0674" + /note="KEGG: cpy:Cphy_0674 AraC family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="AraC family transcriptional regulator" + /protein_id="ACL76584.1" + /translation="MGTYGCALPIPGELVNMKITTFNGIHMFFGEPSKQTVSFMRVEG + IEQLYSFVKKNGWDQITEIKTQHWGGKECDVTTIDGSIMRFFQLE" + gene complement(2621253..2622641) + /locus_tag="Ccel_2243" + CDS complement(2621253..2622641) + /locus_tag="Ccel_2243" + /inference="protein motif:PFAM:PF00544" + /note="PFAM: Pectate lyase/Amb allergen; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_2179 pectate lyase/Amb allergen" + /codon_start=1 + /transl_table=11 + /product="Pectate lyase/Amb allergen" + /protein_id="ACL76585.1" + /db_xref="InterPro:IPR002022" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MLRKMRIFLLAGAVMMQSLIGFGAVDTAHAAVNGLFGLVGFATM + NGGTTGGAGGKEVTVKSAAEMSELLNQRKKNDDTSPLIIKVASKLTGTGAIGVKEVSN + VSIIGVGSSGELDGVGLNIVKASNIIVQNLKIHHTLAPTDCIGIENSKNVWIDHCELY + NMIGDCNGDGKVDEKGDISGGDVDWYDGLLDCKKDSAYITVSWNYFHDSFKTSLVGSS + DSDNYDRKMTYHHNVFKNLKERLPSYRFGTGHIFSNYYADVWNSAVNSRMGAQLKVES + NYFERVGSGAVNGESGLAAGPIGSYNSDLIGYYDVKDNTYVSCKGNQPTTSTCNYTPP + YEYTGYLTPASRVKELVTQYAGVGKLDGSNPTNPTDPTEPTDPQDPIETTKCGDINGD + GSIDTIDFATLKIYLLGQSITIKTEASDLDSDKAVTILDLAVLKKYLLGQVTTLPVNN + GITDPGGNTNPI" + gene 2622688..2622850 + /locus_tag="Ccel_2244" + /pseudo + gene 2623140..2623367 + /locus_tag="Ccel_2245" + CDS 2623140..2623367 + /locus_tag="Ccel_2245" + /inference="similar to AA sequence:KEGG:Cthe_0149" + /note="KEGG: cth:Cthe_0149 HPrNtr domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="HPrNtr domain-containing protein" + /protein_id="ACL76586.1" + /translation="MKSFDISLKSINDVKDFVNIVNKYDFDVDLSSGRYIVDAKSIMG + IFSLDLSKPIKVEIQNDDSEKFCDEIKRFIV" + gene complement(2623460..2623912) + /locus_tag="Ccel_2246" + CDS complement(2623460..2623912) + /locus_tag="Ccel_2246" + /inference="protein motif:PFAM:PF04463" + /note="PFAM: protein of unknown function DUF523; + KEGG: ckl:CKL_3182 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF523" + /protein_id="ACL76587.1" + /db_xref="InterPro:IPR007553" + /translation="MILVSACLAGLDSKYNGKNNYNGYIEKLVREGKAIMICPEQMGG + LPTPRDSCEIACGAGGDVLAGKAKVIDSKGQNQTEKFLKGARETLKVARLYNIKKAIL + KSKSPSCGFGRIYDGTFSGKLIEGNGVTAELLSGNGFEVMTEEDIPKK" + gene complement(2623924..2626290) + /locus_tag="Ccel_2247" + CDS complement(2623924..2626290) + /locus_tag="Ccel_2247" + /inference="protein motif:TFAM:TIGR02063" + /note="KEGG: cth:Cthe_0146 ribonuclease R; + TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; + ribonuclease R; + PFAM: ribonuclease II; RNA binding S1 domain protein; + Ribonuclease B OB region domain; + SMART: Cold shock protein" + /codon_start=1 + /transl_table=11 + /product="ribonuclease R" + /protein_id="ACL76588.1" + /db_xref="InterPro:IPR001900" + /db_xref="InterPro:IPR003029" + /db_xref="InterPro:IPR004476" + /db_xref="InterPro:IPR011129" + /db_xref="InterPro:IPR011805" + /db_xref="InterPro:IPR013223" + /translation="MADLEERKERIVAFMRDKAYKPLLFKELRMVLDVPEEDIELFTQ + VMDELEEEGRVFKTHGKRYGVPSRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADS + LNGAMHNDRVVARVNKKSSSDRKMEGEIIRILKRANTTLVGTFENSMSFGFVVPDNKR + ISGDIFVSKSEFHGAKKGQKVVVEILKYPEARRNAEGRVIEIIGDRNETGVDILSIIK + SYNLEEDFPEDVLNQANSIGDTVTEEMIQGRRDLRGLRMVTIDGEDAKDLDDAVSIET + LENGNYRLGVHIADVTNYVTENSPLDLEALDRGTSVYLVDRVIPMLPRKLSNGICSLN + PHVDRLSFSVMIDIDKNGKAYNHEIFESVINIDERMTYTNVYKILEENDQELIKRYSH + VVSDFQKMKELALILRKKRFQRGAIDFDFDEARVVIDEKGKPIDVKRYEITIANQIIE + EFMLACNETVAEHFFWTNTPFVYRIHEDPDEEKIHNLNEFLYNLGYSIKGINKIHPRA + LQDLLEKVKGTRHERIISTAMLRSLQKARYSNESTGHFGLAAKYYCHFTSPIRRYPDL + IIHRIMKLYLKGGMSEEKINHLEGILPEIAKQCSERERAADEAERESEDLKKVEYMKA + HEGEIFEGIIANVTSFGMFIELDNTIEGLVRMSSMEDDYYNYNESHYCLVGERTRKIY + RIGDSVKVILAKADVAARKIEFILVESDDEDDFDNIDQETEDELIFTKNKSRKSSIKK + NSQSTKAVKADDKGGRNSASDNKSGKKGKIIDKKVYEKIMGKRKRKKR" + gene complement(2626410..2627882) + /locus_tag="Ccel_2248" + CDS complement(2626410..2627882) + /locus_tag="Ccel_2248" + /inference="similar to AA sequence:KEGG:CTC01950" + /note="KEGG: ctc:CTC01950 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76589.1" + /db_xref="InterPro:IPR001241" + /translation="MGRKLKILFTIFLLIAASLFSGCSTVNFSIEDTIKPPESKSIAL + KGTWKIQNYILTDKNSVTPEKKEKYELFIGMEAIFDNEVSAIYKDVCINPQYKSIRTS + AGTFIQNKYRISEDVLGITTENVNVVTITTDNQLFHELIVTDANTAFVYMEDGFLALK + RISVDIDEKIRAESLGNVGLDIDSGDFKEDPLLRSGVLLGIRSADNSYRTLWLYFKNR + ETKAKLNTSQLIVPRAKGFWEIGVINNDDSVDIYAEPFAELSQKEQSKIISKMNLVNK + KSDAKILFVGNDYIGIESDMRLGVLPIDNLATKKPVHLSDIIEGDSANTLKQSAEFFI + SSLDSTKASKLNQRPEEDNFTLRRRNGHWIMKSRLYYKNTLGDKKYEDFDVKQMVPSK + LIHYDEMNIPWNEIKSRLPWTRDAYMSPNKDILILASGENIIVYTVQNKNTINKQLLK + IPILKGESIIMTEWATGKYADLWSEFADTAFDNSYDNGEF" + gene complement(2627887..2629278) + /locus_tag="Ccel_2249" + CDS complement(2627887..2629278) + /locus_tag="Ccel_2249" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: ctc:CTC01951 alkaline phosphatase synthesis sensor + protein PhoR" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76590.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MTFKNSIQARLVRNFILIILISVLAFEVLLVYFTRLYFYNNIES + ILTNQIKTASDFYTRYFSDVPLEVNIMDNADLFWKQTTGQVQIVRNNGVVLLDSQGLE + SGEYVSGSDFKQAQQGKKGVWIGLNNGKEQVMIVAYPLKSDTEQVGVIRFITSLKDVD + KIIFNISMIFIIIGIVVILVAGTISIVLANSIIHPLKNVTGAAELMAEGNLDVRLIKS + RNDEIGKLSDTLNYMASEIQKRERIKNDFISTVSHELRTPLTSIKGWANTIIDDDYSD + REILSDGLNIIVKESDRLTEMVEDLLDFSRFVSGNVELKKEKTDVCSIIDYIEKQMSG + MAKKGKIIFSVKCEKVPTIVLDKNRITQLLINLLGNAFNFTPKNGMVALSSFLENDNI + VFRVEDTGCGISPEELPLVTEKFYKGKSSNSHTGLGLSICDEIVKLHNGSLEIESELD + KGTIVTVRIPYGG" + gene complement(2629283..2629978) + /locus_tag="Ccel_2250" + CDS complement(2629283..2629978) + /locus_tag="Ccel_2250" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cbf:CLI_0424 DNA-binding response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76591.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MENKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQ + ENPDVVLLDVMLPGISGFQVCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVV + KPFNTTELILRAKSLLRRLGGKSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPK + EFFLLKIFLENKNKAFTRDELLDKIWGYDYVGDTKIVDVNIRRLRSKIEDKDSHGMYI + ETVWGIGYRWRKE" + gene complement(2629995..2630870) + /locus_tag="Ccel_2251" + CDS complement(2629995..2630870) + /locus_tag="Ccel_2251" + /inference="protein motif:PFAM:PF01522" + /note="PFAM: polysaccharide deacetylase; + KEGG: cpy:Cphy_3069 polysaccharide deacetylase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide deacetylase" + /protein_id="ACL76592.1" + /db_xref="InterPro:IPR002509" + /translation="MKKFFGVTIAVSMIIVLVAAICLKEAKILKNNGISGIETKISDK + TKEPSNSTDKTNDNGTKKETPTAPSSTKQPDDKEKVKPKTAPVKSKPVIALTFDDGPH + PQHTVQIVNALKKYNGHATFFVVGNRVEKYPGVVKQISQNGNQIGNHSYNHKQLTKLS + ESGIKSDLKKTSDILQKTISKKPSIVRPTYGSVNNRVKSSAGAPLILWSIDTLDWKTK + NKTTTVNKVVSRAKDGDIVLMHDLYKPSAQAAEAIIQKLTAKGYKLVTIDELFATRGV + KPQNGQVYNNAYKKK" + gene complement(2630992..2631540) + /locus_tag="Ccel_2252" + CDS complement(2630992..2631540) + /locus_tag="Ccel_2252" + /inference="protein motif:TFAM:TIGR00277" + /note="TIGRFAM: metal dependent phophohydrolase; + PFAM: metal-dependent phosphohydrolase HD sub domain; + KEGG: cth:Cthe_0145 metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="metal dependent phosphohydrolase" + /protein_id="ACL76593.1" + /db_xref="InterPro:IPR006674" + /db_xref="InterPro:IPR006675" + /translation="MNRDEAYEELKVRLYDKELLRHSLAVEAVMKEFAKYYDADIEMW + GLAGLLHDIDSEKAAGDSQKHSLLAAQILENFDIDESIIYCIRAQNDYQKIPRKRKMD + KVLYAANHLTKLITYCADRLPDKNISDVTAQTVIENITKSDVQGINFEHIKHYKELNI + TLLEFVEITLNAMQKAFDNLRI" + gene complement(2631742..2631993) + /locus_tag="Ccel_2253" + CDS complement(2631742..2631993) + /locus_tag="Ccel_2253" + /inference="protein motif:TFAM:TIGR00810" + /note="TIGRFAM: preprotein translocase, SecG subunit; + PFAM: Preprotein translocase SecG subunit; + KEGG: cth:Cthe_0144 preprotein translocase, SecG subunit" + /codon_start=1 + /transl_table=11 + /product="preprotein translocase, SecG subunit" + /protein_id="ACL76594.1" + /db_xref="InterPro:IPR004692" + /translation="MEAAKWIVNVLHIIFALSIIIIVLLQSGKQAGLSGSIAGGAETF + FGKNKGRTIDALLGKYTAFAAIAFLVTSIALYMLIDRVG" + gene complement(2632284..2633579) + /locus_tag="Ccel_2254" + CDS complement(2632284..2633579) + /locus_tag="Ccel_2254" + /inference="protein motif:PFAM:PF00113" + /note="PFAM: enolase; + KEGG: cth:Cthe_0143 enolase" + /codon_start=1 + /transl_table=11 + /product="enolase" + /protein_id="ACL76595.1" + /db_xref="InterPro:IPR000941" + /translation="MKQYIPIESVFAREILDSRGNPTVEVEVIAEGGFIGRASVPSGA + STGAFEAVELRDENSGRYMGKGVETAVDNVNNTIAPEVEGMNVFDQVAVDKLMIDLDG + TPNKERLGANAILGVSLAVAKAAAEALGLGLYQYIGGVNAKTLPVPMMNIINGGKHAD + NSVNIQEFMIMPVGAENFKEALRMCAEVFHNLKKVLHSKGLSTAVGDEGGFAPNLETD + EQAIQVILEAVEKAGYKPGNDFRIAIDAAATEMYQEDGSYFFWKSNIRKSKEEMVDYW + ADLAGKYPIISLEDGVSEEDWEGWKLLTERLGSKIQLVGDDLFVTNTKRLEKGIKQGV + ANSILIKVNQIGTLTETLDAIQMANRAGYTAVTSHRSGETEDATIADIAVATNSGQIK + TGAPSRTDRVAKYNQLLRIEEELGEVAEFPGLKAWYNLK" + gene complement(2633881..2634571) + /locus_tag="Ccel_2255" + /pseudo + gene 2634806..2635159 + /locus_tag="Ccel_2256" + CDS 2634806..2635159 + /locus_tag="Ccel_2256" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: cdf:CD1360 putative phage repressor" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL76596.1" + /db_xref="InterPro:IPR001387" + /translation="MRFGDRLRELREERDITQNELGKSINVSGRVIGYYEANDRFPRD + ENLLKTIADYFNVSVDYLLGRTENRQMSDEIVTESKIPYNLDLKGLPDEALKKVEDYI + DLIKTKYKPDKKTSR" + gene complement(2635215..2635355) + /locus_tag="Ccel_2257" + /pseudo + gene complement(2635357..2636433) + /locus_tag="Ccel_2258" + CDS complement(2635357..2636433) + /locus_tag="Ccel_2258" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76597.1" + /translation="MKKPSKVIFKIERFANNYKKLGSVLYYLYKLLKSSYFRIFVNFL + FTFVFAFQMQLTDFKTYNIYEKEFYQDKLHILVTFVFIIIYNWVTIMIDNYQEYKGRR + VKCLREVINREAVINQTISRKLNNITKSVCVKAVQIPTKADFSTLSYQDIASLVCHNI + YDAIKISTEKDTHQVSLMHRFKEKKTGREYIKMISYGNANQISPSIFDKHFYLDSDLN + YYHVKIFNEQQNEIYILKNAGEIKKEFVYGKKCTEKNIEQYIAIPVFCENEGTVSLLQ + IEISETQLLGGTTEEIREFVKPFMAYVHILMVNYYRDELFNVLIKKFDILKKSKDRRK + SYLEGMSKYEQHYGENNSSIAPRD" + gene complement(2636583..2638118) + /locus_tag="Ccel_2259" + CDS complement(2636583..2638118) + /locus_tag="Ccel_2259" + /inference="protein motif:TFAM:TIGR01307" + /note="TIGRFAM: phosphoglycerate mutase, + 2,3-bisphosphoglycerate-independent; + PFAM: metalloenzyme domain protein; BPG-independent PGAM + domain protein; + KEGG: cth:Cthe_0140 phosphoglyceromutase" + /codon_start=1 + /transl_table=11 + /product="phosphoglycerate mutase, + 2,3-bisphosphoglycerate-independent" + /protein_id="ACL76598.1" + /db_xref="InterPro:IPR005995" + /db_xref="InterPro:IPR006124" + /db_xref="InterPro:IPR011258" + /translation="MEKKLVTLMILDGFGKNLKQEGNAIQAANKPNLDSYLSKCTNTV + VHTSGMDVGLPEGQMGNSEVGHTNIGAGRIVYQELTRITKSIQDGDFFEKEEFLKAIE + NCKKNNSKLHLFGLLSDGGVHSHNTHLYGLVEMAKRNGLKDVFIHCFYDGRDVPPDSS + KVYTEELEAKLKEIGVGKIASVMGRYYSMDRDNRWERVQLAYDVMVSGKGLTANSAVE + AVEASFARNEFDEFVKPTAILENGKPVATIAANDSVIFFNFRPDRAREITRTFVDPEF + KGFEREKGFFPLCYVCMTQYDKTMPNVLVAFKPQTLENTFGEYISRLGYRQLRIAETE + KYAHVTFFFNGGVETQYEGEDRALIPSPKVATYDLKPEMSAYEVAEEAVKRIDSKQYD + VIILNFANCDMVGHTGVFDAAKAAVEAVDECVGKVVNAVTAQGGVVLITADHGNAEQM + VDYENGGAFTAHTTNVVPLIGIGLGNTKLKEGKLADLAPTMLDIMGIDKPAQMTGTSL + LQK" + gene complement(2638216..2640156) + /locus_tag="Ccel_2260" + CDS complement(2638216..2640156) + /locus_tag="Ccel_2260" + /inference="protein motif:PFAM:PF00162" + /note="PFAM: triosephosphate isomerase; phosphoglycerate + kinase; + KEGG: csc:Csac_1952 phosphoglycerate kinase, + triose-phosphate isomerase" + /codon_start=1 + /transl_table=11 + /product="phosphoglycerate kinase" + /protein_id="ACL76599.1" + /db_xref="InterPro:IPR000652" + /db_xref="InterPro:IPR001576" + /db_xref="InterPro:IPR015911" + /translation="MSMMNKKTIEDIDVAGKRVIVRVDFNVPLDENRKITDDKRIVGA + LPTIKYLVDKGAKTILVSHLGRPKEGFEDKFSMKPTAVRLGELLGKEIIMAKDVVGED + AKSKAAALKDGEVLMLENVRFHKEETKNDANFAKELASMAEIFVNDAFGTAHRAHAST + AGLADYLPAVCGFLIKKEIEFMGKALANPARPFVAILGGAKVSDKIAVIENLIDKVDT + LIIGGGMAYTFLKAKGYHIGNSICEEDKIDLAKTLMEKAEAKGVEIMLPIGSMVAQEF + KNDTEIKYVPSDAMPDGWMGMDIGSLTIENFAKEIKKAKTVIWNGPMGVFEFPNFATG + TKEIAKAVAESGALSIVGGGDSAAAVEQLGFADKITHISTGGGASLEFLEGKELPGIA + VLMDKNPRKVIAAGNWKMNKTASEAVEFVNALKPAVADAKNEVVVGVPFVCLPGVVAA + AKGSNIKVAAQNMHWEEKGAFTGEVSGPMLADLGVDYVIIGHSERREYFGETNEMINK + KAHAIFKYGMTPIICCGETLTQREQGVTADHIRYQIKVALLDLTAEQVSKLVIAYEPI + WAIGTGKTATNEQANEVCTIIRELVAELYGSEVAEHVRIQYGGSVNAKNATELFAMSD + IDGGLVGGASLKVEDFSIIAKA" + gene 2640671..2641168 + /locus_tag="Ccel_2261" + CDS 2640671..2641168 + /locus_tag="Ccel_2261" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76600.1" + /translation="MQSIEEVNLMSADCLATDDKTVKSIGDKKKTGFRDFYKKYYFTN + DSNKEKLKYTFNTYDSGIQNILDKKGELKQFDLKSFNIISTFKIPFVSHVTAKLSYTI + DYKSNGSMCYFDGTDILAIQSDSIDEEISASNHIQATFYLKKVNGDWKISRIPRLKSS + NISDQ" + gene 2641259..2641906 + /locus_tag="Ccel_2262" + CDS 2641259..2641906 + /locus_tag="Ccel_2262" + /inference="protein motif:PFAM:PF00805" + /note="PFAM: pentapeptide repeat protein; + KEGG: cbt:CLH_1771 pentapeptide repeat protein" + /codon_start=1 + /transl_table=11 + /product="pentapeptide repeat protein" + /protein_id="ACL76601.1" + /db_xref="InterPro:IPR001646" + /translation="MNLQKPKIPEKLMQSENINGTVTNLTSLGYDIENYHFKNGYMSE + ISYVSVEFNRCIIEKCSFKKCDVQNFVFDNVIFRDCDISNMDFSNAVFRNTEFINCNM + TGIILSQAKLSDVSVLSCNMQYSNLSSADISRSRIEKSNLSNSYIWEAKLKDLEFQQC + TLLSVEFTGTMLKGIDFTSCEMEGLLIRGPELKGAIVNEFQALSLSKLLGIIIKE" + gene complement(2641922..2643142) + /locus_tag="Ccel_2263" + CDS complement(2641922..2643142) + /locus_tag="Ccel_2263" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: viral A-type inclusion protein, putative" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76602.1" + /translation="MFIKRLCMVLLVFSMMTAPINAVGAAYVVPLQSWGLGDAFDIVY + GTGNPTKYTYDEIRNLYLNNYNNVQITEMDIENSSLLYQQYSMEFDKINNEIINIKKL + IDQNKDVDEYQKQLADLVTQKAELYVNRETSVFIYNSSSLYRNIQRTSQLSVFRDNIY + KTKIMYEKGLVQKTMAEYCKLQANSEEINKSKDMAFQSDIDLYKADYDYYISQQELLT + QQVNTNMENLLNSCGMDRTRTVTISVPVASIRAIPLKNFSDIEKSSCFNDFKSMQLGE + RIRILDGKISILKEYYKDSSNQVKLTINQKKQAELEARRWLAQRRALLQNYYSFYKNK + YYEAGIKEKKANALYQKYTILRNKYNYKLATELSMKEAEVNYETAVLEAWDSLYRYVE + ALGKIEKAISGTIE" + gene complement(2643183..2645066) + /locus_tag="Ccel_2264" + CDS complement(2643183..2645066) + /locus_tag="Ccel_2264" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbl:CLK_3683 putative bacteriocin ABC + transporter, bacteriocin-binding protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76603.1" + /translation="MNMKGILVDINELTDSREMYHAKPHPFVWVFTYVLIGLVIAAVI + WAAFGKKEIVVKASGQVRPESGISTVRNIVGGELESTNYRQGMAVKAGDILYIIKHDN + LLLERESATKKLKKLEKELENHRIYRNCIITEENNFDSINEPVYYEKVRKLLMDIEFS + QTDTAYKTTRLNEEKLLNDTQLNRNLKEIEFLKKYIKSLDNNKNYLISGDELEKQYKQ + KYEKYLIEKTEIQRKYDRQADDIRSNSPEAMKQSIEEEKSQLRAYQTLKKSVSESKNN + FPSGDRYSYLYTDYENRLNLLKNTFEEKKRIYEAYLSLSGVAITKSELEDARIQMQNT + EGEYTAYKSKFLSELEKNIKNIEISIKEKESKVSGTRDKQGLLDLNEKDRQNSLKALY + FQERNDAAQAIDNLADKVGTMKQKNVLCDAELKTIANADGNNEDSLNYSLVERTKVQE + IVAADEKIKAVTDSITGVKENIKKLELCISNAIVKASVNGIVNIITEIYPGDLVAEGA + EILTIIPDTGSAFKMQMTVSNKDIGEIHTGDTVKYSFAALPYREYGQAAGKIINISKD + AVNNAEGQSYYIVEATVPVTKLTSNSGRQGEIKAGMICEANVITKQKSFLRYFLEKIK + LLD" + gene complement(2645076..2647259) + /locus_tag="Ccel_2265" + CDS complement(2645076..2647259) + /locus_tag="Ccel_2265" + /inference="protein motif:TFAM:TIGR01193" + /note="KEGG: amt:Amet_1032 ABC-type bacteriocin + transporter; + TIGRFAM: ABC-type bacteriocin transporter; + PFAM: ABC transporter transmembrane region; ABC + transporter related; peptidase C39 bacteriocin processing; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ABC-type bacteriocin transporter" + /protein_id="ACL76604.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005074" + /db_xref="InterPro:IPR005897" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MQNPFKRYYCVRQHDITDCGAACLATISKQYGYKTSITKIREAA + GTDKQGTNAYGLIKAAESLGFTAKGVKGNQEAFFSEFPLPCIAHVVVDGTLLHYVVIH + KISKRQVLVADPGKGMIGYTPEDFFKVWTGVLILMVPNVSFNKGNETTGLFSRFFSLL + LPQKKLLINIFLTSLVYTVLGILGSFYFKFLLDDILQYNLEKTLHVISIGIIILYLFQ + TLLGAFRSHMILYLSQKIDIPLILGYYQHVLGLPMNFFGTRKVGEIVSRFMDASKVRD + AISGAVLTIMIDTLMALTGAIILYMQNATLFITATIIAAIYAVIVFAFNKPIKKINQE + QMEQNAQLTSYLVESLNGIETVKTFNAEDEASLKTEIRFIKLLRSIFKGGIINNVRSS + ITSFVSLAGGIVILWVGAWNVIKGRMSVGQLLTFNALLVYFLDPIKNLINLQPMMQTA + IVASDRLGEIFDLELEKTKKESEKINPIDLKGDISFKGVDFRYGTRSLVLRNIDITIK + QGEKIALVGESGSGKTSLVKLLLNLYTWEKGEITIKDYNIKDISFEYLREKLAYISQD + IFMFSGTIRENLIMGNQNTDMEQMVEACRMAQAHEFINKLPLRYETYLEENGTNLSGG + QKQRLAIARAILKKPDIFIMDEATSNLDSITERAIEQTLETVCSGVTTIIIAHRLSTI + KRCDRIYVMEDGSIIEYGSHRELIELKGKYFELWKEQLSEREHKQ" + gene complement(2647514..2647903) + /locus_tag="Ccel_2266" + CDS complement(2647514..2647903) + /locus_tag="Ccel_2266" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76605.1" + /translation="MAVVEKDYRLRNVLSLRKKMTSKDVALEIIKLRKFLKDNGIKKT + GSITTVTFSIEMQNGVPFIDMEILVPLPNRVIVSGEYVFKPIFHMVNAVCISKSEHET + SRIRNLLCWNIYDKLIRNKQQQDFLPA" + gene complement(2647942..2648127) + /locus_tag="Ccel_2267" + /pseudo + gene 2648372..2648545 + /locus_tag="Ccel_2268" + /pseudo + gene complement(2648525..2649853) + /locus_tag="Ccel_2269" + CDS complement(2648525..2649853) + /locus_tag="Ccel_2269" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + KEGG: cbh:CLC_1104 sensor histidine kinase" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL76606.1" + /db_xref="InterPro:IPR003594" + /translation="MLGIVGNSLIDFISSIFEILIFVFMISIFLDFTERAKKNVILYF + VIYVVLKIAKIIFPIVFLVDFITSIYILIFVFIAFKGNFAHKIFAFCTAVCLNYVVDI + FIISFTNMGFNYNLFFSTLSGGIRGIWVTIIKLILIILVYILLKNFATNTTLKINILS + SVQTLILIMLPAFSFATITILDWGVRNFVNVPVNTSAFLLIASLCTIIYNVIVMILID + KMILNKKYKHLNEMSEAQLRTQFNHYEQIMSKNQETRKLKHDMKNHLRLIRSLIETND + IDEAKGLLDEIEDTMSGLDLEISSGNNITDAILNEKNKMAHSLGVKFEFSEILPSDNF + INPFDISTIFSNALDNALEAAVKVSGSERFVRTATYIQGKCLFILIENSVEKDIKITG + KEIESTKPNKEQHGFGLKNIKDSVEKYGGSLSTICENRIFKLEILLNIKI" + gene complement(2649847..2650551) + /locus_tag="Ccel_2270" + CDS complement(2649847..2650551) + /locus_tag="Ccel_2270" + /inference="protein motif:PFAM:PF04397" + /note="PFAM: response regulator receiver; LytTr + DNA-binding region; + KEGG: cac:CAC1581 response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, LytTR + family" + /protein_id="ACL76607.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR007492" + /translation="MIRISLCDDENHITGTLAANIKGIRPDIEVLSFDSGENLLDSKY + LFNDIVLLDIEMTGINGIETANQLRKGGYEGIIIFLTSHKEMVFDSFQVKPHNYIVKP + IDIVKVNNILNDAINEVIDRRNTHFEAVANNHTFRIQIENIYYFECNGRKIDIHSKNG + TITILGKMNQIEASLRNKQFFRCHKGYLVNLEHVCEFTNNEIILTDNQKVLISRLKIN + SFKEAFKAFMKGNIKC" + gene complement(2650644..2652953) + /locus_tag="Ccel_2271" + CDS complement(2650644..2652953) + /locus_tag="Ccel_2271" + /inference="protein motif:PFAM:PF07517" + /note="PFAM: SecA DEAD domain protein; SecA Wing and + Scaffold; SecA preprotein cross-linking region; + KEGG: amt:Amet_3779 SecA DEAD domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="SecA DEAD domain protein" + /protein_id="ACL76608.1" + /db_xref="InterPro:IPR000185" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR011115" + /db_xref="InterPro:IPR011116" + /db_xref="InterPro:IPR011130" + /db_xref="InterPro:IPR014018" + /db_xref="InterPro:IPR014021" + /translation="MFLRRKKGTKPAHYKTLVSIINDKGFKSLSDYELKQQISDYKER + YSKYLHNSNENFNTRDSQQFINEYLTKCYAITKEICRRVLGLDPYDSQLLTGIALYFG + KIAELPTGEGKTLAAVFPAVLNALSGKGAHILTFNDYLAKRDAQWMKDIYEFWGLKAA + YIQEDMDRLQRRNSYLADITYVTPKEAGFDYLRDSIVYDKDEIVHRPFNSVIVDEADA + ILIDEARTPLVLAGSMGMQHEIDKGLLELAGLLRRNIDYMTDENSRNVYLTETGAAVV + ENFLGCGNLYNKKNVEILTDINNLLHAKVLLKQDIDYIIKDGRIEIIDEFTGRVAERR + KWDYGLQRSLEALKGIKSTSSNRILGKITIQNFISLYPEMSGMTATAKSSEDEFRSTY + KHDVYVVQPNKKCIRTDYDDYIYTHKEAKYKAVVEEVLTSHNQGRPVLIGTSNIRESE + KLAYMLKQQGIECEVLNAKNDTEEAKIIALAGKLGAVTVSTNMAGRGVDIKLGGDSPE + ERKKVSELGGLYVIGTNRNECVRIDNQLRGRAGRQGDPGSSRFFISLEDDLLVQFGIK + KVIPVKYCGFRQLERINDKKLLSLIYHIQRVVNGQNFEIRKTLGKYSYLLEWQRRRFM + KSRFEVLSCNVPGFLAIEKKELYKELCSKYGKERVDEIQRKVSLHCMDEVWYDFLEYL + ENIKEGINLVSAGRKDPVDEFNKLSINKFEQLQEDINEKILNTLDNIDFSMDASQLAD + RGLQTPSATWTYIINDSIKVKNFTLFSRL" + gene complement(2652991..2654565) + /locus_tag="Ccel_2272" + CDS complement(2652991..2654565) + /locus_tag="Ccel_2272" + /inference="protein motif:PFAM:PF01087" + /note="PFAM: galactose-1-phosphate uridyl transferase + domain protein; + KEGG: tte:TTE1929 galactose-1-phosphate + uridylyltransferase" + /codon_start=1 + /transl_table=11 + /product="galactose-1-phosphate uridyl transferase domain + protein" + /protein_id="ACL76609.1" + /db_xref="InterPro:IPR000766" + /db_xref="InterPro:IPR005849" + /db_xref="InterPro:IPR005850" + /translation="MINPAYEIERLLQFGEKHGMISKLDKIIARNQLLDLLKLNEPFY + GEIPDEYIEFPTEILERIVDYAGEAGLFDKDIYACRELFDTKVMGLMMPRESEIIRKF + TDLAEKQSIKAATDYFYNLCIASNYIRTSQIAKNIKWTSDSKYGQLEITINLTKPEKD + PKTIAMERMQPKSNYPECMLCIDNIGYAGRINFPPRQTHRLMPVTLCGEQWYLQYSPY + VYYNEHCIVLSEKHVPMVISKSTFRQLLDFVRQFPHYICGSNADLPIVGGSILSHNHF + QGGNYLFPMLKAPVIAKYKSQEFRNVDIGLVKWPLSVIRLSCESMDDLVEFSDYVLTC + WKGYSDETSDVFAYTDTEKDRVPHNTITPIVRINETGKYELNLVLRNNRTTEEHPDGI + FHPHKEIHHIKKENIGLIEVMGLAILPGRLKNEIIKIKEILIGNSDTAGIYDSENVLY + KHKNWIEELISKYGTALTNDSADRVLRNEIGKKFEICLEHTGVFKQDNKGLEAFDRFL + KSMGWELIQEQREITS" + gene complement(2654719..2655906) + /locus_tag="Ccel_2273" + CDS complement(2654719..2655906) + /locus_tag="Ccel_2273" + /inference="protein motif:PFAM:PF07055" + /note="PFAM: short-chain alcohol dehydrogenase; + KEGG: fps:FP1842 trans-2-enoyl-CoA reductase" + /codon_start=1 + /transl_table=11 + /product="short-chain alcohol dehydrogenase" + /protein_id="ACL76610.1" + /db_xref="InterPro:IPR010758" + /translation="MIVTPKFRGFICTTSHPVGCEYSVMNQVEYIKNQKKINGAKKVL + VIGASTGYGLASRITAAFGCGAATIGIFFERPGSKNKTASAGWYNSAAFEKMAKEEGL + YAKSINGDAFSNEIKQKTIDLIKKDLGKVDMVVYSLASPRRTHPVTGEVFNSVIKPIR + EAYTSKTVDFHTQLVSETTIEPASDDEIRQTIAVMGGEDWSMWMDALKKADVLEDNVM + TLAYSYVGPEVTHSVYREGTIGKAKDDLEATAIKINENLRTIGGKAYVSINKAVVTQA + SAAIPVISLYVSALFKVMKEKNIHEGCIEQMYRMFNDRLYSGDLKLDSKGRICMDDLE + MRPEVQNEVTKLWNEANNDNVKDITDIEGYRREFFRLFGFEFEDVDYNADVDIEVNIE + GLY" + gene complement(2656059..2657084) + /locus_tag="Ccel_2274" + CDS complement(2656059..2657084) + /locus_tag="Ccel_2274" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76611.1" + /translation="MIKTKLIRLICIIFTLCLFFSFTSYALTGSTFSDSGNHLVYVNN + PESFGLNTGDLVYLYGTNLGNSYKDVEFYHHLYNGWSNAGACRVGVAMMNKGTKPAVI + TYKGSCTATLDGYNFAVIEDTSQVLKSFQDAKHKTITLNPGEKKIVWSDDFRFTPGFS + EFVYGRARFKSNQKFGVWMRVFAAGQSKTAEDVFKEKHPIQGTGHGFCGELAYTEKKV + TLDADRSNITNLCEWPRLLNTYEYSGVINSKPGTSQYHAGNYGVVYNITVNHSAQKKI + IINPKWSSDRPYASIVYSVNNGPWIAGEKITTGMCWIEDLGDGETSNFRFMLPGGNCG + SYYVSFE" + gene complement(2657356..2658363) + /locus_tag="Ccel_2275" + CDS complement(2657356..2658363) + /locus_tag="Ccel_2275" + /inference="protein motif:TFAM:TIGR01534" + /note="TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, + type I; + PFAM: glyceraldehyde 3-phosphate dehydrogenase; + KEGG: cth:Cthe_0137 glyceraldehyde-3-phosphate + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="glyceraldehyde-3-phosphate dehydrogenase, type + I" + /protein_id="ACL76612.1" + /db_xref="InterPro:IPR000173" + /db_xref="InterPro:IPR006424" + /translation="MAVKMGINGFGRIGRLVFRAAVNNPNVEVKGINDPFIDLEYMKY + MLTYDTVHGKFEGTVEVKEGKLVVNGKEIAVFAEKDPSAIAWGACGAEYVVESTGVFT + TTEKASAHIKGGAKKVVISAPSADAPMFVMGVNDDKYTKDMTVVSNASCTTNCLAPLA + KVINDKFGIVEGLMTTVHAATNTQKTVDAPSMKDWRGGRSILGNIIPSSTGAAKAVGK + VIPELNGKLTGMAFRVPTADVSVVDLTVRLEKSATYDEIKAAVKNASENELKGILGYT + EDSVVSTDFIHDARTSIFDAGAGIALNGNFVKLVSWYDNEWGYSNKVVNLIEHMAKVD + A" + gene complement(2658511..2659422) + /locus_tag="Ccel_2276" + CDS complement(2658511..2659422) + /locus_tag="Ccel_2276" + /inference="similar to AA sequence:KEGG:WS0153" + /note="KEGG: wsu:WS0153 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76613.1" + /translation="MLQTTLIDKEISINDKGCFDKYFETSHVLASEMSFTNLFMWKDH + YKIRFGIINDFLCIMSVRDISNPFCFFPVGDYNRREELKKTIETLKEYFTSEGWKLVF + SRVTKQQLKIFDDIKIEYNATEDRNNADYVYTVKSLSTLAGKKLDGKRNHINKFKKLY + TYEYEEISPSNIKDCKNIVEKWYRQRVQSSDETLLHEKIANLGLLENYGILGLKGGLI + RVYGEAQAFTVGEQLNQNTVVIHLEKANAEIRGIYTIINQMFINNQWLHMEYVNREQD + LGVEGLRKAKLSYNPDHLIYKYTIEVC" + gene complement(2659455..2660567) + /locus_tag="Ccel_2277" + CDS complement(2659455..2660567) + /locus_tag="Ccel_2277" + /inference="protein motif:TFAM:TIGR01883" + /note="TIGRFAM: peptidase T-like protein; + PFAM: peptidase M20; peptidase M42 family protein; + peptidase dimerisation domain protein; + KEGG: amt:Amet_0148 peptidase T-like protein" + /codon_start=1 + /transl_table=11 + /product="peptidase T-like protein" + /protein_id="ACL76614.1" + /db_xref="InterPro:IPR001261" + /db_xref="InterPro:IPR002933" + /db_xref="InterPro:IPR008007" + /db_xref="InterPro:IPR010162" + /db_xref="InterPro:IPR011650" + /translation="MVNRTRLVDEFLELVKIDSLSGKERQMCDTLKRKLENMGYMPVE + DNAGEKIGGNSGNIICTIKGNKNVPAIMLAAHMDTVVPGIGKKAVVEGDIIKTDGTTI + LGGDDASGIAIILETMRILKEENIPHGDIQIVFTVAEEIGLLGAKNLDYSKIHAKYGF + ILDSDGRIGCAAIKAPSQHKINVVVKGKAAHAGIEPENGISAFTVMAHAIANMKLGRI + DEETTANIGVIHGGTATNIVCDRVEIEGEARSRQQDKLQSQTDHMRDCFIQAAEKLGG + QVEFNYEMEYPAFNVPTNSAIIDIMKSAATDCSIEFEAVVTGGGSDTNIINSKGIVAV + DLSVGMTNVHSVKEQISIKDMQDAVTYLIAIVQNVK" + gene complement(2660672..2661166) + /locus_tag="Ccel_2278" + CDS complement(2660672..2661166) + /locus_tag="Ccel_2278" + /inference="protein motif:PFAM:PF00588" + /note="PFAM: tRNA/rRNA methyltransferase (SpoU); + KEGG: cth:Cthe_0127 RNA methyltransferase" + /codon_start=1 + /transl_table=11 + /product="tRNA/rRNA methyltransferase (SpoU)" + /protein_id="ACL76615.1" + /db_xref="InterPro:IPR001537" + /translation="MAFNIVLVEPEIPQNTGNIVRTCAATGSVLHLVGPLGFSIEDKY + LKRAGLDYWNEADVRYYNNLDEFKKKNVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGK + ETAGLPEELLKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQNFKEMKVEGQMV + KYEW" + gene complement(2661296..2661760) + /locus_tag="Ccel_2279" + CDS complement(2661296..2661760) + /locus_tag="Ccel_2279" + /inference="protein motif:PFAM:PF04509" + /note="PFAM: CheC domain protein; + KEGG: cth:Cthe_0126 CheC-like protein" + /codon_start=1 + /transl_table=11 + /product="CheC domain protein" + /protein_id="ACL76616.1" + /db_xref="InterPro:IPR007597" + /translation="MNIEYINPFIEASQTVLKQVVNVDARLGKVFLKNSPYQGESILI + IVGITGKIRGQAIFTMSKGVAFKIASAMMMGMPVDELNEISKSALSELTNMILGNTAT + LLYNKGIGIEITPPSLLLGENLQISQSKMKTICIPLYLSDNEILEIDLSVQD" + gene complement(2661973..2662329) + /locus_tag="Ccel_2280" + CDS complement(2661973..2662329) + /locus_tag="Ccel_2280" + /inference="protein motif:TFAM:TIGR02839" + /note="TIGRFAM: stage V sporulation protein AE; + PFAM: SpoVA protein; + KEGG: cth:Cthe_0124 SpoVA protein" + /codon_start=1 + /transl_table=11 + /product="stage V sporulation protein AE" + /protein_id="ACL76617.1" + /db_xref="InterPro:IPR005562" + /db_xref="InterPro:IPR014204" + /translation="MTYLSAFIVGGIICAIGQILIDKTKLTSARILVVYVVAGVVLGS + LGIYQKIVEIGGAGAIIPLTGFGYNLAKGVFRDVDETGLLGAFTGGFKAGAAGLAAAV + FFGFMMASIFKPKAKK" + gene complement(2662355..2663374) + /locus_tag="Ccel_2281" + CDS complement(2662355..2663374) + /locus_tag="Ccel_2281" + /inference="protein motif:TFAM:TIGR02845" + /note="TIGRFAM: stage V sporulation protein AD; + PFAM: Stage V sporulation AD family protein; + KEGG: cth:Cthe_0123 stage V sporulation protein AD" + /codon_start=1 + /transl_table=11 + /product="stage V sporulation protein AD" + /protein_id="ACL76618.1" + /db_xref="InterPro:IPR010894" + /translation="MAEKHIGKQTVILKNPPSIKATASFVGPKEGKGPLKDDFDYIIT + DELWGEDSWEKAESKLVRETFAKVLQKAKLSNDQIDYVLAGDLLNQCIAANYGLRETE + VPFLGLYGACSTMAESMSIGSLMVEGGFAENLVCMTSSHFCSAEKQFRFPLELGSQRT + PTSQWTVTGSGAVVLSSKGTGPYIKHVTTGKINDLGITDANNMGAAMAPAAADTIFAH + FKDTGLQPDYYDLIVTGDLGKVGKQICQEMLKQNGLDIESRFNDCGVMIFDAEKQDTH + AGGSGCACSAAVLAGHIYNQITQGKLKRVLFVATGALMSPISSQQNESIPGIAHAIAI + HRTLN" + gene complement(2663456..2663899) + /locus_tag="Ccel_2282" + CDS complement(2663456..2663899) + /locus_tag="Ccel_2282" + /inference="protein motif:TFAM:TIGR02838" + /note="TIGRFAM: stage V sporulation protein AC; + PFAM: SpoVA protein; + KEGG: cth:Cthe_0122 SpoVA protein" + /codon_start=1 + /transl_table=11 + /product="stage V sporulation protein AC" + /protein_id="ACL76619.1" + /db_xref="InterPro:IPR005562" + /db_xref="InterPro:IPR014203" + /translation="MKKSFTKDQYSKYVEEISPKSKLFSNVLKAFLVGGIICDIGQLF + INLLKNKGLDNDAVSAITSIIMIFLAALLTGLNVYDEIGKFAGAGSIVPITGFANSVV + SPAMEFKSEGYILGMGAKMFIVAGPVIVYGICSSIIAGIIHYLIT" + gene complement(2664001..2664189) + /locus_tag="Ccel_2283" + CDS complement(2664001..2664189) + /locus_tag="Ccel_2283" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76620.1" + /translation="MANNFKTGKMAFYKTKAIIAIIAALIIGAIIIALILTGFPSSKK + IHNKGVYVLNHNPIEFRL" + gene complement(2664241..2664990) + /locus_tag="Ccel_2284" + CDS complement(2664241..2664990) + /locus_tag="Ccel_2284" + /inference="protein motif:TFAM:TIGR02885" + /note="TIGRFAM: RNA polymerase sigma-F factor; RNA + polymerase sigma factor, sigma-70 family; RNA polymerase + sigma-70 factor, sigma-B/F/G subfamily; + PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 + domain protein; sigma-70 region 4 domain protein; Sigma-70 + region 4 type 2; + KEGG: cth:Cthe_0120 RNA polymerase, sigma 28 subunit" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma 28 subunit, SigF" + /protein_id="ACL76621.1" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007624" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014236" + /db_xref="InterPro:IPR014284" + /db_xref="InterPro:IPR014322" + /translation="MKETSDDAVFTLIIKAKAGDKQAQSVLVEKNVGLVWSIVKRFQN + RGYEVDDLFQIGSIGLIKAINKFDTSYDVKFSTYAVPMIIGEIKRFIRDDGIIKVSRS + LKEVSSKARITKEIMSKELGREPTINEIAQHMNISPEELVMAIEAGCTPESLYSTIGD + GENSPILLIDRIDAANNNSCEVDLIDKIAIRQILDTLDTRERQIIILRYFKEKTQVQI + AKLLGISQVQVSRIEKKILRDIKSKMIANNN" + gene complement(2665178..2665603) + /locus_tag="Ccel_2285" + CDS complement(2665178..2665603) + /locus_tag="Ccel_2285" + /inference="protein motif:TFAM:TIGR01925" + /note="TIGRFAM: anti-sigma F factor; + PFAM: ATP-binding region ATPase domain protein; + KEGG: cth:Cthe_0119 anti-sigma F factor" + /codon_start=1 + /transl_table=11 + /product="anti-sigma regulatory factor, serine/threonine + protein kinase" + /protein_id="ACL76622.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR010194" + /translation="MQLVNEMKLEFMSKSNNESFGRVVAAAFASQLDPTVEELADIKT + AVSEAVTNAIIHGYEDTAGKVEMICRLYDEGIQIIISDKGKGIEDIELARQPLYTSKP + DMERSGMGFTVMESFMDSVEIVSEPNMGTTVTMFKKLKS" + gene complement(2665641..2665982) + /locus_tag="Ccel_2286" + CDS complement(2665641..2665982) + /locus_tag="Ccel_2286" + /inference="protein motif:TFAM:TIGR02886" + /note="TIGRFAM: anti-anti-sigma factor; anti-sigma F + factor antagonist; + PFAM: Sulfate transporter/antisigma-factor antagonist + STAS; + KEGG: cth:Cthe_0118 anti-sigma-factor antagonist" + /codon_start=1 + /transl_table=11 + /product="anti-sigma-factor antagonist" + /protein_id="ACL76623.1" + /db_xref="InterPro:IPR002645" + /db_xref="InterPro:IPR003658" + /db_xref="InterPro:IPR014237" + /translation="MDVKLSRKGTTLVVRIMADMDHHSAQYLRQKIDSEITKATVKNI + VFDFTNVNFMDSSGIGVVVGRYKNVCKLNGKAAIINANPKILQIFEMSGILKIIPVYN + SLDTAISSMCG" + gene complement(2666040..2666981) + /locus_tag="Ccel_2287" + CDS complement(2666040..2666981) + /locus_tag="Ccel_2287" + /inference="protein motif:PFAM:PF02650" + /note="PFAM: protein of unknown function DUF199; + KEGG: cth:Cthe_0116 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF199" + /protein_id="ACL76624.1" + /db_xref="InterPro:IPR003802" + /translation="MSFSTIVKDELCRIELHDECCMKSEILGVILIGNLFSNEKILRN + TKVVTENAAFARRIYSIFRRIYGICPEVSIRRSSKLKKHVSYSLTLVPNQMINKILYD + FGISAFTEDEYIPAASTLEKVCCRKSFLRAAFLSGGSISDPEKTYHLEISTHNIMSAE + MIKDLLDDYNINTKIIKRKGSYVAYIKEGEQIVDFLNIIGAHGALMELENVRILKDMR + NNVNRIVNCETANLEKTVNASIRQIENIKYIESTIGIDKLPENLVEIADVRVQFRDAS + LKELGEMLHPKLGKSGVNHRLRKLDEIAERIRKNNQR" + gene complement(2667002..2668993) + /locus_tag="Ccel_2288" + CDS complement(2667002..2668993) + /locus_tag="Ccel_2288" + /inference="protein motif:TFAM:TIGR01561" + /note="TIGRFAM: glycogen debranching enzyme; + PFAM: Amylo-alpha-16-glucosidase; + KEGG: cth:Cthe_0115 glycogen debranching enzyme, putative" + /codon_start=1 + /transl_table=11 + /product="glycogen debranching enzyme" + /protein_id="ACL76625.1" + /db_xref="InterPro:IPR006451" + /db_xref="InterPro:IPR010401" + /translation="MDFGTSCWHSYQQGCQREWLVTNGIGGYASLSLICSNNRRYHGL + LISASVPPTKRQLFLANVLEDMDFEDGSTVSLSSFKTAGGYVNSGFTHLQRVEYNYLP + EFVYSYKDVFIKKKISMKQGDNTVIVQYEIRNGNKDAVLRLTPLVNNRDHHYISRSNN + LKFSVRHDSKAICISGNGESEIRLLVDGGEFKSYNDCYFYDMFYEVERERGLDSTEDH + FIPGCFSIKIKPWETKKVSFIATTETYDLDSLNVLRVIQSEEERLKELLNRAGLQNEL + CRSLVLAADNFIVYRKSTNSKTVIAGYPWFTDWGRDTMIAFSGLTLATGRYGDAKDIL + LTFSKYVNHGLIPNMFPDDGEEPAYNSVDAALWYFEAVYSYLSYTEDYTFIKENIYSC + LKDICNYFIKGTIYDIKMTEDGLVTAGNENTQLTWMDAKVGDWIVTPRHGKAVEINAL + WYNALIIMSGLAERFGDLDIYSALAAKTKESFIKEFWNEKDQCLYDVINSNGKDADIR + PNQILAIGLSFPVIDGCKAKKILNKVWEELYTPYGLRSLSSANKEYKGIYCGNPLERD + GAYHQGTVWTWPLGRFIRAYILVNGGTEQARRNALEFIKPFTDHVKNGGMGSISEIFD + GDNPHYPRGCFAQAWSVSEILRAAVEDIGIDQLGQRINY" + gene complement(2668998..2670302) + /locus_tag="Ccel_2289" + CDS complement(2668998..2670302) + /locus_tag="Ccel_2289" + /inference="protein motif:PFAM:PF01933" + /note="PFAM: protein of unknown function UPF0052 and CofD; + KEGG: cth:Cthe_0114 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0052 and CofD" + /protein_id="ACL76626.1" + /db_xref="InterPro:IPR002882" + /db_xref="InterPro:IPR010119" + /translation="MSAFSWMKPGARIKRWIALLSAGIALICFSILFTIYNYNKGIPY + IIAMSILAFLGLAGTFAAFRLLVRNFAGKLMNGQDLSSLLHEKKISVKGPKIVAIGGG + TGLSTMLRGLKQYSSNLTALVTVADDGGGSGILREDLGMLPPGDIRNCILALANTEPI + MQKLLQYRFQDGMLKGQSFGNLFLAAMDGISDSFEEAVKKMSDVLAVTGTVLPITLED + VRLCAETDNGNTILGEFNIGHRCKNDKSRINRVFLNQTKVKPLNEAIEAIMEADIVVL + GPGSLYTSIIPNLLVDGVCDALGKTRAVIVYVCNVMTQPGETEGYSLSDHIKAIEKHS + HRGLIDYCIVNTSIIPEDMKERYRKDGAELVKVDFDIVKKMGIEIITGDFKSINNGYV + RHNSKRLAKKIMELVTELVLANDGDRILDYYYAQNKINKIGG" + gene complement(2670299..2671174) + /locus_tag="Ccel_2290" + CDS complement(2670299..2671174) + /locus_tag="Ccel_2290" + /inference="protein motif:PFAM:PF03668" + /note="PFAM: conserved hypothetical protein; + KEGG: cth:Cthe_0113 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76627.1" + /db_xref="InterPro:IPR005337" + /translation="MRFVIVTGMSGAGKSLVTKYLEDIGFFCVDNLPPALIPKFAEIS + AQSEGKMEKIALVIDIRGGELLHDLFPALEEVKKSGFSYEILFLEADDDVLVKRYKES + RRQHPLAPEGRLLLGIREERKALQTIKSKANYIIDTSTLVTRQLKQEINGIFLEGKIF + KGIIINVVSFGFKYGIPTDCDLVFDVRFIPNPYYIAPMKNQTGKDQMVKEFVLNASET + KEFISKLDGMLDFLIPNYIKEGKSQLDIGIGCTGGRHRSVAIADEVYRRLEEKMHSVV + IEHRDIEKDGKGVGK" + gene complement(2671200..2672159) + /locus_tag="Ccel_2291" + CDS complement(2671200..2672159) + /locus_tag="Ccel_2291" + /inference="protein motif:TFAM:TIGR00179" + /note="TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine + reductase; + PFAM: FAD linked oxidase domain protein; + UDP-N-acetylenolpyruvoylglucosamine reductase domain + protein; + KEGG: cth:Cthe_0112 UDP-N-acetylmuramate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylenolpyruvoylglucosamine reductase" + /protein_id="ACL76628.1" + /db_xref="InterPro:IPR003170" + /db_xref="InterPro:IPR006094" + /db_xref="InterPro:IPR011601" + /translation="MNNKYAANKEECVILQNEEFVQKLVSVTGKDGVSVNEPMSAHTS + FKIGGPADIMTYPENSTQLGNIIRECIKSNMPFMVMGNGTNLLVSDKGIRGVVIKIYD + NMSAFNVENETIELDAGILVSKASKLALEYSLTGLEFAEGIPGTVGGAVTMNAGAYTG + EMCMVVYQTEYMDREGNIKTITGDEHCFSYRNSVIQKSKGIVLRTKLKLHKGDSQKIK + EQMDEFNFKRRDKQPLEWPSAGSVFKRPQGYFVGKLIDDSGLRGFGIGGAKISDKHSG + FIINSGGATCKDVLDLIKHIQKTVDEKFRVQLEPELRIIGDFN" + gene complement(2672152..2672871) + /locus_tag="Ccel_2292" + CDS complement(2672152..2672871) + /locus_tag="Ccel_2292" + /inference="protein motif:PFAM:PF02811" + /note="PFAM: PHP domain protein; + SMART: phosphoesterase PHP domain protein; + KEGG: cth:Cthe_0111 putative hydrolase" + /codon_start=1 + /transl_table=11 + /product="PHP domain protein" + /protein_id="ACL76629.1" + /db_xref="InterPro:IPR003141" + /db_xref="InterPro:IPR004013" + /translation="MKIVVDTHTHTVSSGHAYSTVQENAKEAYTNGIHMINISDHGSA + MKGAPFLYYFGNLEVIPDSLYGVRIIHGVELNIMDYNGTVDLPERYLKKLGLVLASFH + DICIEPSTVENHTNGAVEILKNPYIDILAHPGNPQFQIDIEKVVKTAKEYNKLIELNN + HSFVVRKGSERNCFEIARMCKKYGVRVATGSDAHISFNIGRFDNVMKILEEVEMPEEL + VVTTSVERMESYLSERKKRIE" + gene complement(2672906..2673832) + /locus_tag="Ccel_2293" + CDS complement(2672906..2673832) + /locus_tag="Ccel_2293" + /inference="protein motif:TFAM:TIGR00679" + /note="TIGRFAM: HPr(Ser) kinase/phosphatase; + PFAM: HPr serine kinase domain protein; + KEGG: cth:Cthe_0110 HPr kinase" + /codon_start=1 + /transl_table=11 + /product="HPr kinase" + /protein_id="ACL76630.1" + /db_xref="InterPro:IPR002078" + /db_xref="InterPro:IPR003755" + /db_xref="InterPro:IPR011104" + /db_xref="InterPro:IPR011126" + /translation="MFSVTIKEIMEEFQLEELTGTPGYENVEISSADVNRPGLQLAGY + MEYFGTDRIQIIGKGETAYLMQLTEEERYRRLDNFFKCGFPCMLVARGLGVFPEMIEV + GRKYKIPVLRTDDVTSRFMSGVIRYLNLQLAPRTSMHGVLVEVYGEGILILGESGVGK + SEIALELVKRGHRLVADDNVEIRKVSDKTLVGTAPDIIRHFIEIRGIGILDVKNLYGV + GSVKMTENINLVIKLEHWNDKKIYDRLGLEDEYTDILGLTVPCLNVPVSPGRNLAIIV + EVAAMNNRQKKMGYNAAKALSERVLGNINKDI" + gene complement(2673984..2676425) + /locus_tag="Ccel_2294" + CDS complement(2673984..2676425) + /locus_tag="Ccel_2294" + /inference="protein motif:PFAM:PF03030" + /note="PFAM: Inorganic H pyrophosphatase; + KEGG: swo:Swol_1064 membrane-bound proton-translocating + pyrophosphatase" + /codon_start=1 + /transl_table=11 + /product="Inorganic H pyrophosphatase" + /protein_id="ACL76631.1" + /db_xref="InterPro:IPR004131" + /translation="MYLQHRQLRKNVLRVLLISLLMGFFVPLSAFAGEADLKTPPLSS + TQNSILYIGMLICLLGMLFGVFQFLKIKKIAAHKSMLDVADTIYQTCRTYLVQQGKFL + GLLLVFIGVCIAFYFGFLQDKGAGGVFLILFFTVMGILGSYSVAWYGIRMNTMANSRM + AFSSLERKPLKLLSIPLDSGMSIGVILICVELLMMLIILRFVPHELAGAAFIGFAIGE + SLGASALRIAGGIFTKIADIGSDLMKIVFKIKEDDPRNPGVIADCTGDNAGDSIGPTA + DGFETYGVTGVALITFIVLAVTGKLQSDMIIWIFTMRILMIVTSIASFYINKLFSKIR + FADSINIDFEKPLSSLIWITSFLSIIATFFASFLMIGPGTVTNESSGGLWLVLSVIIS + CGTLGAALIPEITKIFTSPKSVHVKETVTASREGGPSLNILSGIVAGNFSAFWKGMVF + IVLMFGAYIASRMGLADIMSYPSVFAFGLVAFGFLGMGPVTIAVDSYGPVTDNAQSIY + ELSLIEAIPDIDSEIEKNFGFKPDFEKAKYYLEANDGAGNTFKATAKPVLIGTAVVGA + TTMIFSLILVIKDTLGVKPEEILNLLNPFTILGFLCGGAVIYWFTGASIQAVSTGAYR + AVEYIKKNIQLDEDASSKAAVEQSKEVVKICTQYAQKGMVNIFVAVFSFSLAFAFLSA + PKSGNESVALFVSYLVSIAVFGLYQAIFMANAGGCWDNAKKVVEVDLQQKGTPLHDAT + VVGDTVGDPFKDTSSVALNPIIKFTTLFGLLAMEIAISDTFKDIAPYAGIVLMACALY + FVWRSFYKMRVNKEN" + gene complement(2676606..2676679) + /locus_tag="Ccel_R0054" + /note="tRNA-Gly5" + tRNA complement(2676606..2676679) + /locus_tag="Ccel_R0054" + /product="tRNA-Gly" + gene complement(2676685..2676759) + /locus_tag="Ccel_R0055" + /note="tRNA-Gly4" + tRNA complement(2676685..2676759) + /locus_tag="Ccel_R0055" + /product="tRNA-Gly" + gene complement(2676857..2678203) + /locus_tag="Ccel_2295" + CDS complement(2676857..2678203) + /locus_tag="Ccel_2295" + /inference="protein motif:PFAM:PF01743" + /note="PFAM: Polynucleotide adenylyltransferase region; + metal-dependent phosphohydrolase HD sub domain; + KEGG: cth:Cthe_1389 metal dependent phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="polynucleotide adenylyltransferase/metal + dependent phosphohydrolase" + /protein_id="ACL76632.1" + /db_xref="InterPro:IPR002646" + /db_xref="InterPro:IPR006674" + /translation="MNLCEKFEFPENAGYVIKKLNEAGYDAYLVGGCVRDSILCKAPY + DWDITTNALPIDIKSIFDRTYDTGIKHGTVTVLIGEMCLEVTTYRIDGDYKDFRRPDK + VEFTSSLREDLARRDFTINAMAYHPEQGLVDFFGGLQDLKKRIIKAVGDPEQRFREDA + LRMMRAIRFSAQLGFEIEEATFEAIKSNSALIANISSERIRDELNKTLVSENPEHFNY + LHQTGILPYILPEFERCYKTEQINPYHVYNVADHTMYAVKSIENDHILRWTVLLHDVG + KPPRKTTDSKGIDHFYGHQAVSSQIAEKVLNRLRFDKESIKKIVLLVKYHDMDIEDTP + KSIRKAVNKIGDELFPLLLKVQKADKMAQNPKFLAERIVKWNRIEKIYSDIKSEQQCL + SKKDMAVNGDDLIQLLGMKPGIQIREMLDYLCDCVLECPELNEKQKLLELAKKRMH" + gene complement(2678291..2678665) + /locus_tag="Ccel_2296" + CDS complement(2678291..2678665) + /locus_tag="Ccel_2296" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0454 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76633.1" + /translation="MSLIPRKKRKGKSENVEIIVPEKSTYIKKQHINYSEYEGQTVTV + FVNSGGAAGNGFTGILLLQTDSYLKLLMLPSEPPQCSLGNACCGKDVNLLFCTLCPYN + FTLGSVAEIPLEAVTAFVHNSI" + gene complement(2679016..2679876) + /locus_tag="Ccel_2297" + CDS complement(2679016..2679876) + /locus_tag="Ccel_2297" + /inference="protein motif:PFAM:PF03741" + /note="PFAM: Integral membrane protein TerC; + KEGG: ckl:CKL_2793 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integral membrane protein TerC" + /protein_id="ACL76634.1" + /db_xref="InterPro:IPR005496" + /translation="MSTKKALKWVGFWMALAIIFNIGILLIEGPTKASQFLGGYVIEL + SLSVDNLFLFLILFSSFGIPSAYQRRVLNYGIFGAVILRLVFIVLGITLVNKIHFILY + IFGVILILSGCKMMFGHEKPVDYKDNRVLKVMGKFLPMTDKMHEEKFFIKENGKRFAT + PLFAILVLIESSDILFAIDSIPAIFSISTDPFIVYTSNIFAIVGLRSLYFVLGALQER + FKYVKYGVALILVFTGIKLGILYFDLHIPILYSLLTIFVILIASVIFSVYKSKRDEKK + EELPLKKVDL" + gene complement(2680272..2681747) + /locus_tag="Ccel_2298" + CDS complement(2680272..2681747) + /locus_tag="Ccel_2298" + /inference="protein motif:PFAM:PF07282" + /note="PFAM: transposase IS605 OrfB; + KEGG: tma:TM1831 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS605 OrfB" + /protein_id="ACL76635.1" + /db_xref="InterPro:IPR010095" + /translation="MGLRTIHLKLHKPGKLKREIIQKAFENYNNAFNYLLKTAFDNID + EIESNFKSPKGTYSTFSLSKWINSEISSELNKFNVQPFKDSLKLDFGMTLASYFVQKQ + AKPDMIFPNFRQDYALGQERLRPIYFCRYDTKRSFCLLYDTESNRYFAKLFLMNTKNA + KVRKISADRRELIYISKNSEAAKSLKRETFIIIPLSFGKWQENMLRQAIDRPEILRTA + HLLCRNDEYFLSISINLPEDKEIKADTFMGVSRGIRNDINYTITDIKGNTIKKGSLEN + CNNTKDRKQIICKMANSIADIALKNKSMVILQNLVGKGDKLSWRKEGTVHKPVYGCKM + YNDLARVLEYKLPQKGLPIPAKVSSVDIFHTCCVCGSNTRKNRFSETVFICTTCGASY + SMDELGSRNLAVKLIKYEKTTLKLKARKTPEGMYLSNELIGLNMFVHKSENPYDRLKE + EIKLLLEKKQDNSANSKLDFKDIKSIIDKLVKNDFSNIEII" + gene complement(2681763..2682935) + /locus_tag="Ccel_2299" + CDS complement(2681763..2682935) + /locus_tag="Ccel_2299" + /inference="protein motif:PFAM:PF07228" + /note="PFAM: Stage II sporulation E family protein; + SMART: protein phosphatase 2C domain protein; + KEGG: cbh:CLC_1773 sporulation domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="protein serine/threonine phosphatase" + /protein_id="ACL76636.1" + /db_xref="InterPro:IPR001932" + /db_xref="InterPro:IPR010822" + /translation="MSLYIDVSYESINKYNEELCGDKVEIIRSPDSVVVVLADGLGSG + VKANILATLTSKIIGTIMSNGLDIEEAVNTVAKTLPVCKERGVAYSTFSIIQIFNNGE + GYLAEFDSPSVIRLRKGKVMNLETESRVVNDKLIKEARFKVSPDDLFVMISDGVIHAG + IGQTLNLGWQWDNVCEYIQKTYKKDASSKTLAKLLLSACDNLYVHEPGDDTTVVTLKA + KKPVKLNLMIGPPVDSSRDEEIVSRFIENEGKKVVCGGTTSHIVARVLGKEIKTSIEY + FNPAVPPTAEIEGINLTTEGVLTLRKTLDLLKTCVSPESSMGDMLKLNKKDGASRLAK + MLLEESTSIYFFVGRAMNPAHQNPEFPLNMGMKFKLVEELAELLTHTGKHISIEYC" + gene complement(2682935..2684659) + /locus_tag="Ccel_2300" + CDS complement(2682935..2684659) + /locus_tag="Ccel_2300" + /inference="protein motif:TFAM:TIGR00229" + /note="KEGG: cpy:Cphy_0092 putative PAS/PAC sensor + protein; + TIGRFAM: PAS sensor protein; + PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; Fe-S cluster domain protein; + SMART: PAS domain containing protein" + /codon_start=1 + /transl_table=11 + /product="putative PAS/PAC sensor protein" + /protein_id="ACL76637.1" + /db_xref="InterPro:IPR000014" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR007202" + /db_xref="InterPro:IPR017900" + /translation="MSIIQFKEANCKNCYKCIRSCPVNAIAFKNDQAEIIHDECMLCG + NCLTVCPQNAKSVNSDVQKVKKFIQKREKVYVSLAPSFISAFDHDEKWVYYALKKLGF + THVEGTANGAYQVSRQYESLLKQRKMKNIITSCCSSIILLIEKYYPQLLDQLAPVVSP + MIAHAKMLRETYGQRIRVVFIGPCISKKEEFDDLQNGNQIDAVLTFDDLDKWFEEEGL + YESDEPIVGIKNFDTSARIYPIPGGILKTIDRKYKKNYRSISVDGVERCMDVLQSILE + GDIENYFIEMSSCKGGCLGGPYMKNVPGGFLTARERLLNYAKRTGIKTETDLTSSVMA + LTKVDLSKKFIDRSKKLEIPSEAVIQGILNSIGKFSKDKELNCGACGYHSCREKAIAV + FHGKAQVHMCLPYMRERAESISNIIINYTPYAIFALDEGLKIQELNEPAQQMFNLGAT + NMNGRCISEILPCDEFEQVLEGAKNVYDEKYVYESYGMVVKQSIINVKQHNTVIVIIN + DITKEEAQRQKILESRSQNIDIAQKIMEKQMTVAQEIASLLGETTAETKVALTKLKKS + FMSEMGEL" + gene complement(2684745..2685005) + /locus_tag="Ccel_2301" + CDS complement(2684745..2685005) + /locus_tag="Ccel_2301" + /inference="similar to AA sequence:KEGG:CLK_1211" + /note="KEGG: cbl:CLK_1211 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76638.1" + /db_xref="InterPro:IPR001545" + /translation="MLDIYVCVGSSCHLKGSYQIINCFQRMIKENNLESKAELKASFC + MGHCTTGVCVKIGDTFYGDVGVINAESFFTEKVINTIEGNRE" + gene complement(2685166..2685360) + /locus_tag="Ccel_2302" + CDS complement(2685166..2685360) + /locus_tag="Ccel_2302" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76639.1" + /translation="MINNENEVLCEITGNDKNVCMKLMLVDEAKTDMEYLCSSCNKSF + CKVNPLFIGMVPTSTGQKAV" + gene complement(2685484..2687172) + /locus_tag="Ccel_2303" + CDS complement(2685484..2687172) + /locus_tag="Ccel_2303" + /inference="protein motif:TFAM:TIGR02512" + /note="TIGRFAM: hydrogenase, Fe-only; + PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding + domain protein; iron hydrogenase small subunit; + hydrogenase large subunit domain protein; 4Fe-4S + ferredoxin, iron-sulphur binding, conserved site; + KEGG: aoe:Clos_0990 hydrogenase, Fe-only" + /codon_start=1 + /transl_table=11 + /product="hydrogenase, Fe-only" + /protein_id="ACL76640.1" + /db_xref="InterPro:IPR000283" + /db_xref="InterPro:IPR001041" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR003149" + /db_xref="InterPro:IPR004108" + /db_xref="InterPro:IPR005829" + /db_xref="InterPro:IPR013352" + /db_xref="InterPro:IPR017900" + /translation="MGTMIIDGQHIEFTDEKNILAVIRKVGIELPTFCYHSELSVYGA + CRMCMVEDKWGSTITSCSTPPKDGMEVWTNTDKLKKHRKMILELLLANHDRDCTTCEK + SGRCKLQEIALKVGVKKVRFGQEKKEIPIDDMGPSVIRNPNKCILCGDCVRACQEIQG + VGVLDFAYRGSNLQVTTAFNKSLQEVDCVNCGQCRVVCPTGALMIKKDIDRAYKALHD + KNKRVIAQIAPAVRVAIGEDFGLQPGEISMGKIVSALRKLGFDQVFDTAVGADLTVIE + EAEELMDRIQRKEKLPLFSSCCPAWFKYAEQKHPDLMENVSSCLSPQQMFGAVIKEQY + KREKASDEKENVVIAIMPCTAKKYEAARPENTINGERQVDMVITTQELAIMIQENGIV + FNELEDEAIDMPFGFTSGAGVIFGVSGGVSEAVLRYYYKERNASTLRGLSYCGVRGME + GVKEASAEIDGRTVRIGIVHGLKNAEKLIRRIKSGEEKFDFIEVMACPGGCIGGAGQP + IPQNENVRKLRAKGIYKVDKSLPIKRSDDNPTIDALYNGILNSNRNILHRNGKH" + gene complement(2687178..2689049) + /locus_tag="Ccel_2304" + CDS complement(2687178..2689049) + /locus_tag="Ccel_2304" + /inference="protein motif:PFAM:PF01512" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; Respiratory-chain NADH dehydrogenase domain 51 + kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, + conserved site; + KEGG: aoe:Clos_0989 NADH dehydrogenase (quinone)" + /codon_start=1 + /transl_table=11 + /product="Respiratory-chain NADH dehydrogenase domain 51 + kDa subunit" + /protein_id="ACL76641.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR001949" + /db_xref="InterPro:IPR011538" + /db_xref="InterPro:IPR017900" + /translation="MKINNLQDLKAFSDRSVQAMDKQKKKVLVCAGTGCVAGGSLEIY + NRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEMGPLVRIEPENYLYLRVQIED + CEEIVNKTLINNEAVERLMYTDDDKVYKAQEDIPFYRKQTRMVLKNCGSINAESFSEY + VAKGGYKALGKVLFEMQPQEVCQSILDSNLRGRGGGGYPSGAKWKQVLKQDSEVKYVV + CNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKSTIGYIYVRAEYPLAVERLKIA + IEDARKHGMLGENILSSGFSFDININMGAGAFVCGEGSALTASIEGERGMPRVKPPRT + VEKGLWEKPTVLNNVETYANVPLIINNGSEWYKSIGPENSPGTKAFAITGNVNHTGLI + EVPMGTTLREVIFDIGGGIKNGKKFKAVQIGGPSGGCLTEEHLDLPLDFDSLKRVGAM + IGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILEKIVNGKGSK + EDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVVDKKCKTHTCKSLA + SIVIEKEKCKGCSKCARICPVQAIEGKIKEPYTVNQSKCIKCGACLEVCPFAAIKEA" + gene complement(2689049..2689522) + /locus_tag="Ccel_2305" + CDS complement(2689049..2689522) + /locus_tag="Ccel_2305" + /inference="protein motif:PFAM:PF01257" + /note="PFAM: NADH dehydrogenase (ubiquinone) 24 kDa + subunit; + KEGG: aoe:Clos_0988 NADH dehydrogenase (ubiquinone) 24 kDa + subunit" + /codon_start=1 + /transl_table=11 + /product="NADH dehydrogenase (ubiquinone) 24 kDa subunit" + /protein_id="ACL76642.1" + /db_xref="InterPro:IPR002023" + /translation="MDDCKCSLVDGVLSKYDNHKSHLIAVLQEIQNEYKYLPEDVLKY + VAEKLDINLSKIFSVATFYENFSLVPKGKYIIKVCDGTACHVRKSIPILNAMRKELGL + SDNKHTTDDMLFTVETVSCLGACGLAPVITINDKVHAKMTPDSTIELIKTLRSEG" + gene complement(2689863..2690960) + /locus_tag="Ccel_2306" + CDS complement(2689863..2690960) + /locus_tag="Ccel_2306" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: amt:Amet_0907 aldo/keto reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL76643.1" + /db_xref="InterPro:IPR001395" + /translation="MIYKKYGKTGKEISAIGFGGMRFPKTGDTYDHDKCADIVVRANE + LGVNYFDTAPGYNDDHSELIMSHAFKSMKKPFYVSTKSSRKDGSKLREQLETSLKRMN + LEKINFFHIWCILSLDDYRSRMVKGGAYEAALKAKEEGLIEHIVFSTHCTGDEIETIV + NEGCFEGMTVGYNILNFPFRQKGLEAAYKKGLGIATMNPLGGGLIPQKADYFNFIKSE + DDKNVVDAALRFNASHDEITTVLAGMSSIDEVIQNCKVGDNLVKLDQNKLKEIEARLF + NSMDKLCTGCRYCEYCPKEIPVSKYMLSYNNHILGNTQDVLDNLKNHWGIKQEDVKDC + IECGLCEGKCTQHLPIISRLKEIGAFEEISK" + gene complement(2691129..2691863) + /locus_tag="Ccel_2307" + CDS complement(2691129..2691863) + /locus_tag="Ccel_2307" + /inference="protein motif:PFAM:PF01863" + /note="PFAM: protein of unknown function DUF45; + KEGG: cth:Cthe_0542 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF45" + /protein_id="ACL76644.1" + /db_xref="InterPro:IPR002725" + /translation="MKNLKEIVETGYRINLNGKELDYSLKRSSRKTISIIIKNTGQII + VACPLETPLMYIEKVLIRKAGWIVKKLAEIRENPIPVLEKSFDNGDVFYYLGEPYRFK + IVRDVGPEICLKDGLMILQIPEAPDRIKIKSFLKHWYVSKATELLEQRIKIYSLSIGV + SPKKLAVREQKTRWGSCSTKGNINLNWKLIMSPLQVIDYVVVHELCHMKEMNHSRKFW + ELVECIMPDYKVYKKWLKENGYTLML" + gene 2692047..2692667 + /locus_tag="Ccel_2308" + CDS 2692047..2692667 + /locus_tag="Ccel_2308" + /inference="protein motif:PFAM:PF06541" + /note="PFAM: protein of unknown function DUF1113; + KEGG: ckl:CKL_0747 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1113" + /protein_id="ACL76645.1" + /db_xref="InterPro:IPR010540" + /translation="MNISKYFARVYDVFLYFIIYSFFGWLMETVYLSVYHWHFVKRGF + LISPFCGIYGVGTLLVVFILDKLKSYPFLVFFGSVFITTVLEFITGVLLQKVLNRELW + NYSGDSLNFLGIICLRNTLIWGIMSLIAVYSIHPVVVNKIRLLSLRTKTLISNICFVW + ISADLCISIFTSLHGINNIQWVSGLVFHKLKYIGNITVKVVYFMHR" + gene complement(2692671..2693006) + /locus_tag="Ccel_2309" + CDS complement(2692671..2693006) + /locus_tag="Ccel_2309" + /inference="protein motif:PFAM:PF03960" + /note="PFAM: arsenate reductase and related; + KEGG: cno:NT01CX_2298 arsenate reductase-like protein" + /codon_start=1 + /transl_table=11 + /product="arsenate reductase and related" + /protein_id="ACL76646.1" + /db_xref="InterPro:IPR006660" + /translation="MNIQIYGTKGFDTQKAERYFKERKINYQYIDLFKYGMSKGEFES + VKSAVGISSLINTKSKEYEKLNMRNLGVGKVAQEVLLKNPKLFNFPIVRNGKQATVGY + QPDIWNQWE" + gene complement(2693047..2693697) + /locus_tag="Ccel_2310" + CDS complement(2693047..2693697) + /locus_tag="Ccel_2310" + /inference="protein motif:PFAM:PF01339" + /note="PFAM: CheB methylesterase; + KEGG: ckl:CKL_0573 CheB1" + /codon_start=1 + /transl_table=11 + /product="CheB methylesterase" + /protein_id="ACL76647.1" + /db_xref="InterPro:IPR000673" + /translation="MKKNKALLDDDSLLFREDNPRGVPLRFDSRKIIAIGASTGGTEA + VFSILKQLPHNIPGILVVQHIPPMFSRMFAERLNNQTGLIVSEAEDGDYVEEGKVLVA + PGDYHMKVKKTGERYRVEVFRGERVNGHCPSVDILFESLAKEAGNNAVGVILTGMGSD + GARGLLTMRKKGARTIGQDEKSCVVYGMPKVAYEIGAVEKQTSLGNIPKTLISMLK" + gene complement(2693815..2693988) + /locus_tag="Ccel_2311" + CDS complement(2693815..2693988) + /locus_tag="Ccel_2311" + /inference="protein motif:PFAM:PF07561" + /note="PFAM: protein of unknown function DUF1540; + KEGG: cth:Cthe_3071 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1540" + /protein_id="ACL76648.1" + /db_xref="InterPro:IPR011437" + /translation="MSVKKMSQPNTGIKCVVNTCHYYMNGDHCTAEQIEVQPKNARDT + QETDCATFLPENQ" + gene complement(2694074..2694886) + /locus_tag="Ccel_2312" + /pseudo + gene complement(2694910..2696613) + /locus_tag="Ccel_2313" + CDS complement(2694910..2696613) + /locus_tag="Ccel_2313" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cbe:Cbei_4828 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76649.1" + /db_xref="InterPro:IPR001991" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /db_xref="InterPro:IPR004090" + /translation="MKWFNNLKIGTKLLATFIIVALLAGVVGIVGIINIKKEEKNYTE + LYKNFGIATANIGKISTDFNSIRAMTRDILLSNSVEDKKNYSNQIKDLDKDVQLNLKE + LFDSLQTEKEQKAYTALNEDLNKYDEIRDRVINMAIAGQDDEALTLFYKEGTEPAKLA + KQYIDELFELKETGGVERTEEYSRETDATVYTMLTVVVIAVIVAVLLGIFISRLISVP + VNRLVIAAEKIADGDLNVDVKQNSKDEIGMLASAFKRMSDNLNDVISSINSAAEQVSS + GSRQVSDSSVALSQGATEQASSIEELTASLEEISAQTKLNAENATQASNLAENVKTIA + LKGNQHMKEMLNAMDDINDSSSNISKIIKVIDEIAFQTNILALNAAVEAARAGQHGKG + FAVVAEEVRNLAARSANAAKETTDMIEGSIHKVEGGTKIANETAEDLELIVDGIAKAA + DLVGNIAEASNEQAAGIEQINQGIMQVSQVIQANSATSEESAAASEELSSQAELLSEQ + VERFILKKVVRSTDNYRGDGEINPEILKVLNKMSDKNKNITQNIRPKTIDLSDNEFGK + Y" + gene complement(2696627..2697124) + /locus_tag="Ccel_2314" + CDS complement(2696627..2697124) + /locus_tag="Ccel_2314" + /inference="protein motif:PFAM:PF01584" + /note="PFAM: CheW domain protein; + KEGG: cbe:Cbei_4822 putative CheW protein" + /codon_start=1 + /transl_table=11 + /product="CheW protein" + /protein_id="ACL76650.1" + /db_xref="InterPro:IPR002545" + /translation="MESAVGQEIYEQDEDTQKDKFLTFMLGKEFYGIEIRHVTEIIGI + QLITEVPELPEYIRGIINLRGKIIPVVDVRLRFKKTFKEYNDRTCVIVIDIDDLSAGL + IVDSVSEVITIPESDIVPPPDIKKTGNRFIKGIGKVDNDIKMLLDCEKLLNEDDVDML + INFNN" + gene complement(2697149..2699146) + /locus_tag="Ccel_2315" + CDS complement(2697149..2699146) + /locus_tag="Ccel_2315" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: CheW domain protein; ATP-binding region + ATPase domain protein; Signal transducing histidine kinase + homodimeric; Hpt domain protein; + KEGG: cbe:Cbei_4829 CheA signal transduction histidine + kinase" + /codon_start=1 + /transl_table=11 + /product="CheA signal transduction histidine kinase" + /protein_id="ACL76651.1" + /db_xref="InterPro:IPR002545" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR004105" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008207" + /translation="MSGQSSNESMLEIYLYETDQLIEQLETIIIESEKIGNYTSETIN + EIFRIMHTIKGSSAMMFFNEISTLAHTLEDLFFFIRKEKNQYVSFSAISDIVLDGVDF + IKVELEKIKRNDTADGKANNLIAGIRDLLSYIKKDSKAKEAVNQNSVYSKLENALVST + SSKEFQAVIRFEDGCEMENIRAYSVIHNLKQITEDFYYIPEDIIDDDNSSNIIQKNGF + KIFFNSDKTYDELYDFFSQIIFLKDLKLVHNNSQDCGKHEEANSKWQEGTKTGTNTHQ + SMISVNVLKLDTLMDLVGEMVIAEAMVTQNTDLKNLDLPDFYKAARQMRKIHNEIQQM + VMSIRMVPLATSFHKMHRIVRDMCKKLDKKVDLVLIGENTEVDKNIIEHISDPLMHLI + RNSIDHGIETTKERLTAGKPERGTLTLEAKNSGSYVLIMVKDDGRGLDKNSIMNKARE + NGLIHRPENEMLDREIYNLIFLPGFTTNNNITEFSGRGVGMDVVAKNIEAVGGSVSVD + STEGKGTVITFKIPLTLAIIDGMNIKVGNSRFTVPTTAIKESFRPGKKDLITDPDQNE + MIIVRGICYPVYRLHRIYNIKTEITEFDRGIFLMVEQDEKSICIFADELLGQQQVVVK + TLPPYIKKIHQNSDFAGCTLLGDGNISLIFDVSRLIFTNKI" + gene complement(2699215..2699580) + /locus_tag="Ccel_2316" + CDS complement(2699215..2699580) + /locus_tag="Ccel_2316" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; + KEGG: ckl:CKL_1122 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="response regulator receiver protein" + /protein_id="ACL76652.1" + /db_xref="InterPro:IPR001789" + /translation="MGIKVLIVDDTVFMRTSLRLLLEKNGFEVVGEADNGLAAINMYM + EFMPDVVTMDITMPEMDGLQALKAIRQINANAKVVMVSAMGQENQVRESILFGAKSFI + VKPYKDEHVINTLRKIADS" + gene complement(2700123..2700764) + /locus_tag="Ccel_2317" + CDS complement(2700123..2700764) + /locus_tag="Ccel_2317" + /inference="protein motif:PFAM:PF07238" + /note="PFAM: type IV pilus assembly PilZ; + KEGG: cth:Cthe_1173 type IV pilus assembly PilZ" + /codon_start=1 + /transl_table=11 + /product="type IV pilus assembly PilZ" + /protein_id="ACL76653.1" + /db_xref="InterPro:IPR009875" + /translation="MDKFNLVLRHYNKVKPMNCEIVSGDTKKVFTVKLCNEEKNGAEI + IKGDPVLIGFLNSDETLYLSGGNVVGAIPNEEEYIIHSNNPENIAFETERRQYERFPT + SLIGEMKLVDFNKREPVCIKDFSYAGMCLYSTDDFNKDDEVEISVFLSNSVIKYDATI + VRKTVRFGRFEYGIQLTHRDKNSMYYTQNQLTSFILSEKEIMYRHLLNAKLKL" + gene complement(2700892..2701983) + /locus_tag="Ccel_2318" + CDS complement(2700892..2701983) + /locus_tag="Ccel_2318" + /inference="protein motif:TFAM:TIGR00254" + /note="TIGRFAM: diguanylate cyclase; + PFAM: GGDEF domain containing protein; + KEGG: cbe:Cbei_3707 diguanylate cyclase" + /codon_start=1 + /transl_table=11 + /product="diguanylate cyclase" + /protein_id="ACL76654.1" + /db_xref="InterPro:IPR000160" + /translation="MLRDLIANAAILISFLSIANQLYKDKEIVSRPIFKILAGGVCGI + LGILLMCYSVHIQNKILVDFRNIATLLAATIGGLSAIISGLVMGAFRIAYFGLDKYSA + TGAFLILVVTAGIILIFKTQRPLGRKWLISTIYITVLSCGVYFYTFKNDFSILLSISP + YFILGTFIVSYTVYKYMIYLNNMRALFKKLKEESTKDYLTGLNNVREFDKLFRLVIDR + AVSNNHKFSLLLIDIDFFKKINDTHGHQAGDKVLKEIGKILRHNCRANDKISRNGGEE + FSILLENASNSKAIEIAERIRRIIEENEFEITSGRKINVTVSIGISSYPETVSDITQI + IERADGALYKAKRSGRNLVVTDSVISDNL" + gene complement(2702238..2706725) + /locus_tag="Ccel_2319" + CDS complement(2702238..2706725) + /locus_tag="Ccel_2319" + /inference="protein motif:PFAM:PF00331" + /note="PFAM: glycoside hydrolase family 10; S-layer domain + protein; Carbohydrate-binding CenC domain protein; + Carbohydrate-binding family 9; + KEGG: swo:Swol_0293 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 10" + /protein_id="ACL76655.1" + /db_xref="InterPro:IPR001000" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003305" + /db_xref="InterPro:IPR010502" + /translation="MRRNVKWNRVLSVVMTIALLFSVMPLNNVVKAEVETIYHEDFAK + GKGAALQAGDATLTTVTDKVFVGNDDGAALYVNPRKNNWDGADFSFDKLGMKEGVKYT + ITVKGYVDPETDPENPVVLSGSQAFLQVVDSYAWIAGADFVAGEEFTLTGTYTVDTSK + DSAIRIQSNDVGATVPFYIGEITVTGEKLTAPTPVTEKTIYHETFESGNGLAKQSGDA + TLTTVTEKTFPTGDVEGTVLNEDGAALYVDTRVNNYDGADFVFSDIGLENGKSYEITV + IGYVDSITDVPAGAQAFLQSISSYGVVASTDFVAGKPFILKGKYTVDTSKDDRIRVQS + NDEGAAVPFYIGDILITGPAPSMKTIDFEDGTEGGFIPRIGKEVLSVTNEANHTDGGE + YALKVDGGRENAYCGPSLRIEKYIDQGSEYRVTVWVKLASDAESAEIDLSTQIGNGEG + VAEYPSLSKKTVKKSDGWVKFEGKQRYYDTSSGYITIYLQSDNTAAAFYIDDVSVVNS + GSVSLPIQTDLTPIKDVYKDDFLFGNAIAPNELKGKSFELLKHHFNVITAGNDMKPDA + LQRSKGVFSFETADAMIQKAHDNNIQVHGHVLVWHQQTPVWMNGVTDDADVTKYKKDE + NGKNITIPREEALINMRTHIENVVKHFGDKVISWDVVNEAMSDGISDPSDWKNCLRKD + SMWYQSIGDDYVEQAFLITKEVLEKNNLNDIKLYYNDYNDDDQNKSQAIANMVNEINT + NYAKTHPDKLLIDGVGMQAHYSTSTKPKNVEASLKRFIDLGVDVCVTELDITAGSGQK + QSSDEINAQAYLYAQLMKIYKAHADNISRITIWGLDDGSSWRKEACPLPFDSDLQAKN + AYYAIIDPDKYMAEHEAPPTVEIKQGTAAKGTPVIDGTVDSIWDKAKVIPIDKANAAW + ETAKGTAQVLWDDKNLYVLIKVNDSVLDKSSANPWEHDSVEAFVDENNGKTESYENDD + GQYRVNYDNETSFNPDKIKEGFESAVKVSGTSYTVEMKIPFKTVTPTNNLKIGFDAQI + NDAKDGTRTGYRNWNDTTGVGYKDTTVYGELILIDGSTPIPSSPSNDKTSSEKVKGTV + NGKEVPIAKAAIEYKDGKKVTSIVVDDTKVSELLGQKSVVVLEPSTKSDVVIGQLNAQ + TIKNMADKEAILEIKTENISYTMPASKINIEKVASALGNNIDLTDIKVNVSISGVSDS + VNNIVKDSAEKNNYKLASTPVEFNLTCSNGTKTVEISKFNGYIERTIAIPDGVNPNGV + ITAIVLNKDGSFSHIPTAIVLKDGKYYAKINSLTNSTYALISNTKTFKDVENHWSKNA + VKNIASRLIMNGADNDSFVPDMAITRGEFIESIVKAIGLYRTDEGKDIFADVSSSNSY + YDAVSIASEYGIISGYGNGEFRPMSTITRQEAMTIVAKTMKITGLKVDYTTDEIADSL + IGFKDSDKLAVWARNSTAACVKAGIVAGKSLTVIAPEDNITRAETASVINKLLINSNL + I" + gene complement(2706866..2710018) + /locus_tag="Ccel_2320" + CDS complement(2706866..2710018) + /locus_tag="Ccel_2320" + /inference="protein motif:PFAM:PF00331" + /note="PFAM: glycoside hydrolase family 10; S-layer domain + protein; Carbohydrate-binding CenC domain protein; + Carbohydrate-binding family 9; + KEGG: ote:Oter_1101 endo-1,4-beta-xylanase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 10" + /protein_id="ACL76656.1" + /db_xref="InterPro:IPR000276" + /db_xref="InterPro:IPR001000" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003305" + /db_xref="InterPro:IPR010502" + /translation="MYRNRNKVLALLLAFAMIISVMPMSAVMAETKTTYHETFADGKG + AATQSGGATLEKVGNKVFEGNDDGAALYVSNRKNNWDAADFKFNDIGLKNGKTYSITV + KGFVDSNAKVPAGAQAFLQVVNSYAWLAGSDFVAGKAFTLSGKYTVDTSKDDGIRVQS + NDEGKEVPFYIGDISITEEAVEEVPEDPSRPKAETFKTITFEDKTTGGFGARSGEGGE + KLTVTKEANHTDGGSYALKVENRTMTWHGPSMNVEKFVSQGSEYKVTAWVKLASPESS + QLQLSTQVGNGGTASYVSLAAKTISTSDGWVKYEGTYRYNNVSSEYITIYVESASSAN + ASFYIDDISFEQTGSGPIKIQNDLESIKNVYKKDFLIGNAIAAEDMEGVRLDLLKKHF + NVMTAGNAMKPDALQPTKGNFTFADADKLVDKVLAEGFEMHGHTLVWHQQSPAWLNTK + VDASGNAVPLSREEALTNLKTHIKTVVEHYGNKVISWDVVNEGMNDNPSNPEDWRGAL + RQSPWYQAIGPDYMEQAFLAAREVLDAHPDWDVKLYYNDYNDDNQNKSKAIYYMVKEL + NEKYAKTHPGKLLIDGVGMQAHYNMSTNPSNVELSLERFISLGVEVSITELDVQAGSD + FKLTDEIANAQGYLYAQLFDIYKKHAANISRITIWGLDDGTSWRSSTNPLPFDKNLQA + KPAFFGTVDPAKFMNEHQPQTPKNAKYTTARYGTPVIDGTVDSVWSKAQDIPINQYQM + AWQGATGTAKALWDDKNLYVLVQVSDSELDKKSVNTYEQDSVEVFIDENNGKTTFYQD + DDGQYRVNYDNETSFNPESISTGFKSATKVSGTSYTVEIKIPLKSVTPSNNLKIGFDV + QINDAKDGSRKSVATWNDTTGNGYQDTSVYGVLTLSNSDSNNTSQYITRGEFIDSIIK + ALGLNKNVQVKDSFKDVTKDSSYYASVSVAYQKGIVSGYKNGEFKPQAKITRQEAMTI + IAKAMKAAGKNVNYSADEINKILKEFKDSNKVAGWAKGSVAACIKAGIVSGKSGKMLA + PQENITFSQTESIVKKLSAK" + gene complement(2710393..2711310) + /locus_tag="Ccel_2321" + CDS complement(2710393..2711310) + /locus_tag="Ccel_2321" + /inference="protein motif:PFAM:PF00512" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase A domain protein; + KEGG: cbk:CLL_A1409 two component sensor kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76657.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MIEGQVKGLSVAVGILAIIVLMLVLYIIIVRTQLRRINRQLENR + LAGDTRQPIRIELINHELNQLTSNINKCLKAEETLRLECVREEKRFKELIANISHDLR + TPLTAIRGYQQLMEKGQLTEGQRKKLGIAQKHAEQLGQLVDHFFEYSYLLNSELKPQL + VRINLTNLLTECLAGYVSTFEEHGLTLSFEETPPIFVLADKEMTLRIIQNLLRNCITH + SAGNVEVKLSALQTAVISIKNPIENTSQIDTTRLFDRFYTGDKSRSKTTGLGLPIVKI + LAEEMGGNVVADLYKNQLTIQVEFPFTKN" + gene complement(2711307..2712098) + /locus_tag="Ccel_2322" + CDS complement(2711307..2712098) + /locus_tag="Ccel_2322" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbk:CLL_A1408 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76658.1" + /translation="MVNVIRADLYKIFKSTVIRVLLAITVLSSLIMVLFAYLIPKGSL + GGEYTGIGFMFSDMNTISILGAVTAGIFICGDFENKTIHNTIADGYSRAGIIISKSIV + FFCSILLIILPYAIVTILALSTGYKFEMGSVAIGFLNILSKQSGTELSAYVLVKLIAV + SGTLIMVHMSQLSLCIPVAFAVKKPVLVVAIYYAISILSGQLSSLAARSSFNILSLTP + FGGNRMFLTVQSGAGEILKGSAVSLLFIIVVVLVTCGIFRKSEIK" + gene complement(2712091..2713014) + /locus_tag="Ccel_2323" + CDS complement(2712091..2713014) + /locus_tag="Ccel_2323" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbk:CLL_A1407 bacitracin transport ATP-binding + protein BcrA" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76659.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MKEYILKTNNLTKSYNGVNVLDNVSLALKEARIYGLIGRNGAGK + TTFMRIAAGLAFPTGGDVELFGKKGDKLLESQRKRIGCMIEYPGFIPYMSAQENLRYY + RTIKGIPSTTVEQELLELVGLENTGKKKAKNFSLGMKQRLGIAIALLGEPELLILDEP + INGLDPLGVVEIRNLLNRLCDERDMTILISSHNLPELYQVATDYIIMHKGIVKQSVTL + AELEENCKHHILIECDQPEKLVSVLEVQLGTTNYKVMPDKKIKLYDYLDNREAAARAI + FDNGILVTEFSIQGDTLENYFISVIGGEQNG" + gene complement(2713129..2713809) + /locus_tag="Ccel_2324" + CDS complement(2713129..2713809) + /locus_tag="Ccel_2324" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cbk:CLL_A1406 regulatory protein VanR" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76660.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MGKILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKN + TYDLILLDIMLPFKSGDEILKEVRQFSDIPVIIISAKDMVGTKIDLLKMGADDYITKP + FDLGEVVARVSANLRRSHRKTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIV + ELLIKNRNKVFTKATLYETIWQDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWG + LGYRLYKE" + gene complement(2713912..2715132) + /locus_tag="Ccel_2325" + CDS complement(2713912..2715132) + /locus_tag="Ccel_2325" + /inference="protein motif:TFAM:TIGR01426" + /note="TIGRFAM: glycosyltransferase, MGT family; + PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; + Glycosyltransferase 28 domain; + KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase, MGT family" + /protein_id="ACL76661.1" + /db_xref="InterPro:IPR002213" + /db_xref="InterPro:IPR006326" + /db_xref="InterPro:IPR007235" + /translation="MSKVFFFNIPFHGHVNPSLGLVRELVKNGEEVIYYCNESFRGKI + ESTGAVFRGYSDKFYLDENYVTYNLTDLFQVHLELSALILDELIEDVKKDKPAYIIHD + TMCPWGKHLSKITNIPAVNTFTTLALEPDGFFLTAGFALALAFTIVKNIPNMTKIRKT + KKLIESKYNIKVSSLLDIVLNKEELNLVYTSKEFQPKSEKLIKRYRFVGPSSMYRIEN + MPELKLNRNTDRPLIFISMGTIFNNNIEFFNICTKAFENMDIDVLMSVGKSIDIPSLS + IPDNFTVKYYFEVPQLEILKECNIFMTHGGMNSTQEGLFFGVPLIIIPQQQEQAHVAM + QVVRSGSGICLKKSKITSELLKNTVDKIMSDRSYRENALRMRDSFIKAGGPGKAVKEI + LLYVGRKKIINTSI" + gene complement(2715135..2716565) + /locus_tag="Ccel_2326" + CDS complement(2715135..2716565) + /locus_tag="Ccel_2326" + /inference="protein motif:PFAM:PF00550" + /note="PFAM: phosphopantetheine-binding; + KEGG: mar:MAE_56580 peptide synthetase" + /codon_start=1 + /transl_table=11 + /product="phosphopantetheine-binding" + /protein_id="ACL76662.1" + /db_xref="InterPro:IPR006163" + /translation="MREKQNVEQIEGILTNIWKEVLYLKTLNVNDRFFDLGGDSFKAE + MISDICLEKGIQVTPNDIFNYKSISEIAKNTDIIHEPAKEAFKDDKITEKKLKIKYQR + DITTYLHRAIPLCAILTEDSHYSWFYEHYIQLFFITYNNNFSRLEFLEPKNNFEEIFD + ETYLTYKEQQSDIIEFIEKSIDSGKYLTINIDEYYLPQKGSYNEHHYVHQSMVFGYDK + TAGKLMALGFDSNMLFKELIFDYDDFVKAYESAKTNYEFTAPWAETEAIQLLTPKRTE + GGCKFNLSRFMEEINKYLDGSESDSSRITKLIPLEEQQMCTDIIYGPQICNAIVESLE + KLGRDIVQGLDVQGMVEQFKEKMRGDIMPAIDYRSIHLLYEHKKGLYDRFKYISNNYY + TSTKLNTLLEEFNKQVDKLNTARLTFFDLEHMLRFNFDPATISFENIMISFQKVIDTI + KSVGDEEEQLLRDICMEFETGYRGGK" + gene complement(2716603..2717799) + /locus_tag="Ccel_2327" + CDS complement(2716603..2717799) + /locus_tag="Ccel_2327" + /inference="protein motif:TFAM:TIGR01426" + /note="TIGRFAM: glycosyltransferase, MGT family; + PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; + Glycosyltransferase 28 domain; + KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase, MGT family" + /protein_id="ACL76663.1" + /db_xref="InterPro:IPR002213" + /db_xref="InterPro:IPR006326" + /db_xref="InterPro:IPR007235" + /translation="MSKVFFFSIPFCGHVNPGVGLARELVEKGEEVIYYCIESFREKI + ESSGAVFRSYGNKFYLNDDFVTHNNIEILRVHLELSEIIMEQLLNDIKRDKPDYIIHD + FMSTWGKHAAQASNIPAVNIYTTLVERPEGFLKTAGLFLAVAFQILKNIPRMIDICKI + TRRLKKYNIKVKSLIDIIDNNEALSLVFTSRKFQPYAEKFGDEYKFTGPVSMHRNEKI + KDFRVNRSAGRSLLFISLGTVFNNDRNFFTQCIKAFGNMDIDIFMSVGKKIDISSLTI + PENFTVKYFFEIPQLEVLKECDVFITHGGMNSVHEGLMNGIPLIVVPQQLEQTHMAKR + VAETGSGIYLDMSEVTPESLKKSYKKIISDGSYSKNAEKMKNSFLNAGGPKRAVEEIF + SYIKEN" + gene complement(2717898..2719127) + /locus_tag="Ccel_2328" + CDS complement(2717898..2719127) + /locus_tag="Ccel_2328" + /inference="protein motif:TFAM:TIGR00128" + /note="TIGRFAM: malonyl CoA-acyl carrier protein + transacylase; + PFAM: Acyl transferase; + KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="malonyl CoA-acyl carrier protein transacylase" + /protein_id="ACL76664.1" + /db_xref="InterPro:IPR004410" + /db_xref="InterPro:IPR014043" + /translation="MNKIAFLFPGQGAQYIGMGSKLCENFTVAGQVFDEANEALGLDL + KKLCFQGSMDDLTKTENTQPAILTVSVAAFRVYMQEIGVKPDYAAGHSLGELSALCCA + GGIEFTDAVSLVRQRGRFMQEAVPEGTGSMAAVSGVEKEIIERECSLVSKGGNIVVVS + NYNSLEQTVISGHVKAVNDVGEQLKSMGARVVYLKVSAPFHSPLMQPAADRFRDVLKK + YSFGEMKWPVISNVTSEPYPGKDKIIDYLSLQITNPVRWQSTMEYLQNSGIDKAVEMG + PKAVLKNLLRSNKSITVFSSETTEDISLIKKKFDSDASGSKKPANNGLMVITRCIAAA + VSTKNRNWDENAYQKGVVEPYRKLVEMKEELVKQRIQPTNEHIEEAVDLLKQIFNTKL + LTIEEQNERLSQLFNII" + gene complement(2719120..2727378) + /locus_tag="Ccel_2329" + CDS complement(2719120..2727378) + /locus_tag="Ccel_2329" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: HAD-superfamily phosphatase, subfamily + IIIC; FkbH like protein; amino acid adenylation domain + protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; + KEGG: ava:Ava_1613 non-ribosomal peptide synthase" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76665.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010033" + /db_xref="InterPro:IPR010037" + /db_xref="InterPro:IPR010071" + /translation="MSVMQFLSRLRNMGVNLWLDKDDLKYQAPKGVVNKTLLAEISQN + KHEIIEFLKKLKIETSSNNERIPQAPRDGITEFPLSYSQQSMWFYDQLIKGNPAFNIS + NAVKITGKLDTAAIENAINELVKRHEALRTTFISNNEGNPVQVINPQFKAQLCTTYVD + YSADESRFKDLLKEEARGVFNLETGPLFRFHLFILSEEEYILTMVIHHIISDGWSNTV + LVGELFTLYKDSVQGVEQVLPLPPVQFADYAYWEKNRLRGELLENLLNYWKTQLANTG + TLKLPLDRERSAVRSFEGGYEAVEISPELTKKIDIICKSKNVTQFILILAAFKTLLYI + YSGQQDICVGTVVANRNRKEIERAIGFFMNTLALRTRIDGESCFTEILEREKKTTYDA + FTYQELPFDKMVEELKPPREDGVNPFFQVMFILQNTQKVELELPGVKMKPIEIESGMA + PFDLRLQLTESHEGLKGGFDYNLSIFDPATIRSLARHLITTLECIVQNPEQKIIQLPI + FTPDEKRDIKNKFRPTNEEKLKIAVAATFTAEPVEDYINWWCKQFGIKTEVAFAPYNQ + IFQQILDETSLISLNNGANVLLVRFEDWLRNDMSGDAEQLEKLEKNFSDLVNALKSKT + KGIPYFAGVLPVCRYSNISQRVSEFIEDMNCRWKMVLEEMENVYVMDCRFLNEHYAID + VVFDPLKDTEAHMPFSDTFFSALGTVVARKICAWRKQNFKVIVLDCDNTLWKGVCGEE + GTQGVIINEPFKRMQGFMLKRYREGMLLAVCSKNNEADVWDVFENNKGMLLKKEHFIA + WRINWRSKADNIKEIADELNLGIDSFIFIDDSPVECSEVMMKLPEVLTLNLPEDEAQI + PGYLKHVWAFDRFKVTAEDAQRTQMYLAEKERKQIQDSVQSLDGFIKGLELKMSMNPV + EDSQYIRAAQLTHRTNQFNLSTIRRTEEELRQLTSLPGFRCHVIEVSDRFGDYGLVGV + IISKESGSKLFIDTFLLSCRVLGRRIEDAILVGLKKLCIKTGTKVLEAEFRPTEKNIP + FKNFLNNSGWKSIEEGNELSRFQLDIEAISDNENLVECYFNSKFEVSVKSPEVVKSKH + EPVHIKQEEKETSVNNGWKVLSVNRENLLHKAYLLALENAFGKSLTALPVHRTGTGAK + AVATKNEEYKAPCNKTEKILVEIWQEILGVENIGVNDDFFRLGGHSLTAVSIISRLRD + RFHKYIPLQWIIENRTIGQLGKLIGEIEETDNSDDEQDHISMVSDETKEYPLSFSQQS + MWFYDQLNKGNAVFNLSSAVRISGRLNIEILKQTLENAVMSHEALRTTFKNIDGIPVQ + VINDSVAVEINKIDLTHLNKNNEEEIKNHLKQEARFIFNLEKGPLFRFCLFFLNGNEY + IFSMTTHHIVSDGWSNTIIVEEFLRHYTQFAEGQNIEIKPLPIRFADYAVWERNRFTG + ERLDKLMGYWKKQLENPTTLELPTDKARPKTRTYEGGFESIAIPEALVPELKKLCNNQ + GVTMFMLILAAFQTLLHRYSGQNDIFTGTVVANRNRAEIENTVGPFINTLVLKTNFDE + NPDFLCLLAKVKKTTLEAYEHQELPFDKMLEEMRLERDLSRAPLFQVMFILHNNKKAE + LELDGMRITEIDVASDMAPFDLRLQLTETEKGIKGGFDYNISLFETETVKAISMHLIK + LIESIVQKPTEKVSGLEYITETEKRQILTEFNNTDADFPEEKVIYQYLEEQAEKESEN + IAVILENKKLSYVELNDRANCLARLLQKNGVGRESIVALMMERSLEMITAIMAVQKAG + GAYLPVDPHFPAERIDYILKDSDTGILLTHKEFGDLKIPQNIKKINLDLIDLSHGEKS + NLPLIATSENIAYVIYTSGSTGKPKGTLIEHRSLVNRLNWMQKKYPLNRDDIILQKTP + YTFDVSVWELFWWSIAGAKVCFLEPGAEKDPGKIVEAIEKNNITVIHFVPSMLGVFLE + YLNQTGEVSRVAGLKQVFASGEALTPSQVKAFRSLLSKNETRLANLYGPTEATIDVSY + FDCDTEDELDSIPIGKPIDNTKLLIMDKNMQLQPVGVTGELCIGGNCLAREYLNKPEM + TDEKFIPNPYKPNERLYRTGDLAKWRRDGNIEYLGRIDFQVKIRGLRIELGEIEKQLT + AHPDVKECVVVAWKKGEGDIHLVAYVVCENSMQAEQGGIQSFLEKSLPDYMVPRIYVF + LEMMPLSPNGKIDRKSLPAPVVSTDRAYEAPRNGTEKLLADIWKKILSLDRIGINDNF + FEIGGDSLKAMETIIHLKKQGMQLEIKDLFEGQTIRNLGKCIRNSVNRDKEVPVTGEI + GLLPTQKGFFRKTRTEITHWNISVMLYRKDRFDENIIKKAFTRIVEQHDALRINFRID + GEKITQFNRGIDGELFEISIFDCIADKDDTTNMDDVAYALHRSMNLTEGPLVKLALFR + RFDGDHLLLVIHHLLCDGLSLMTILEDAATVYNQLQRNEPTILPPKTSSLKEWSERIY + DYCNSSEFLKEINYWGKVENIPVAQLPKDTAFNEERHKHDVAINETLLFDNETRVLMK + NVNQRFDTDIKDLLATAFGAAVKEWTESDNILIDYKIHGRENIFDGIDVSRTVGWFAT + EFPAVLDMSQLEDLQAQILSIRDMFRNVPGRGLGYETLREITLPENKKELKLNLCPEI + LFNYSGDFAGRTNEDFQGFGISSLYKNLNESPESERKYTLIIELMILDGNLNVTLHYN + KHQYYESTMTGLLNKFKKYLYKITDLGKKINSERRGKLYE" + gene complement(2727397..2730399) + /locus_tag="Ccel_2330" + CDS complement(2727397..2730399) + /locus_tag="Ccel_2330" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: phosphopantetheine-binding; Beta-ketoacyl + synthase; + KEGG: npu:Npun_R3426 beta-ketoacyl synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL76666.1" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MGNFEENGSLDGAIAIIGMAGRFPGANNTEEFWENLYNGVESVK + FFNHDDLIKMGIDEHLLDNPKYVAADAILDGMDMFDAEFFDYSAREAEITDPQHRLFL + ESAWEVLESAGYNSDLYDGRIAVYASANLSGYMVRNLYSNPGLVESLGSFKIMIANGQ + DFLATKVSYKMNLMGPSVNVNTLCSSSMVAVHYACQSLNSFECDIALAGGVSFQVSRN + ETFFYQEGGIGSADGHCRAFDSKANGTVSGSGLGILALKRLEDAIADGDCIHAIIKGT + GINNDGSSKNSYTAPNVDGQAECIAEAIEMSGVNPETITYIDAHGTGTNLGDPIEIAA + LTKAFRAYTDKKEFCAIGSAKTNIGHLVNAGGLASMIKTVLSMKHRIIPASLNFEEPN + PKIDFVNSPFYVNSKLSKWETEGFPIRAAVSSFGIGGTNTHVILEEAPAVVPSENSQR + PYQLISLSAKTETALEKMTQNLVEHIKKNPDLNLADIAFTQHVGRRSFNHRRIMICKN + LEDLETKISNSTCGNVISYFQKHKDRPVIFMFPGEGKYLNECGELYRTEEKFRNSVDY + CADILFPMLGTDIKAVLDSGSYMNNNQTIERAAVFVAQYSMSKLLQESGLKPESMVGE + GLGEYVCACISGVMSLEDSLRITAAEEEDFPGILSEISLSKPQIPFVSSFSGKWIEDS + QATNTDYWLKQRNSSFSAQGLKEILSDDERIFVEIGNGKRFISEEGTSLIYVQNENKN + QEEAFMECLGKIWVYGGNVNWNKFYEEEKRHRIPLPTYPFERQRYWIEPGVKSEAAKE + PEFPVSDKSEIDEKLLAKCSRVSISASIELNENTYGLETHAPKKKQIEEMLLFKEKLE + KLCSEFEGKINISPLLLKGSEEPSCSDLGGAEKLSKRPRPDLDVPYVEPVSETEKIIA + EHWKKVLGFEKLGIHDDFFELGGHSLIAAAVATDLSKIFRIQIPMTKLLETTTIASVA + EMVETYQWAVQGEGEAAAAEEDMEGGTI" + gene complement(2730399..2740106) + /locus_tag="Ccel_2331" + CDS complement(2730399..2740106) + /locus_tag="Ccel_2331" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bsu:BSU17180 polyketide synthase of type I" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76667.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MYAFKTLVDLIVARQYEKSKGITFIISETEEHFVPYGELYHGAR + ALLYNLQTAGFKKGDEVIFQIDNNRQFMFAFWACILGGMIPVPVTTGTNDEHKLKLFK + IWDILKNPKMLASDDFFERLKSFGNNNDLSRQVDIMQTRTLSLENLEKTDFFGEIEKA + EENDIAFIQFSSGSTGDPKGVIITHKNVLYDIGSVIRWVNINSEDSGLNWMPLTHDMG + LIGTHIKDVIACINQYNIETQLFIRHPSLWIQKASEHKVTLLYSPNFGYKHFLTFFKP + ENKKDWDLSKVRLIYNGAEPISYELCDEFLEKLSQYGLKRNSMYTVYGLAEGTIAVTF + PRLGDEMRFITLDRNYLNIGDTVREVSKDDTRGCSFADEGYPIYDCYVRICDIDNNDI + GENKIGYICISGANVTSGYYNNKEATRKAITKDGWLNTGDLGFMRDGRLVITGRAKDV + IFVKGQNYYSHDIERVAQEVDGIDVGKIVAVGAFNEKIKSDELILFVLFKMKVDKFIG + LVRSLKKLISERMGIEVSQVIPIKSIPKTTSGKVQRYKLRESYIKGQYDTIKNDIELL + LKSEAECRLIDQPENEIQAKLVEIWQEVLGLKRIGIKDNFFELGGDSLKLTQIISRIR + EEFEVELEQTLLFETPVLSELAEIIEKSDKISESEKRIHRFSEKGALPLSYAQQRIWF + LDRLNENSSQYMLYSGLNIKGILNYDLLVKSLNTVIERHECLRTSFFEEDGQPVQKVN + DGLQMDLPFVSLTEIPLENRKKEAMVLAKREISCPFDLSKAPLIRGKLFQLEKDQYIL + VLTAHHMVFDGWSFKVLLKELETLYNSYLKNEKYVLPELIITYSDYACWQIDRYSEST + IQKQLAYWKEKLSGKLPVLELPFSKQRPTVQTYKGSNLRCSLSNELSQKLKRGAEQEG + ATLYMILLAAFKVLLFKYTGQEDIIIGSPVANRNRSELEPLIGFFTNNLVIRTVLSGN + SSFRDLLRNVRNVTLEAYSNQDVPFEKIVEELNLERDMSRNPLFQVFFSLQGTPVQEA + RLSGMSVSSIDIEGDTARFDISVDIIDSGSGLEANFEFNTDLFDPDSIKRMAGHYTHI + LENLTANFETQIKKFDILSSEESKTLLEGWNNTRVDFESDLWTRLFEKKVLSNPEAIA + VVKGAEKLSYGELDTRANRLANYLVSLGVGPETIVGIYMERSIDMLTALVSIHKSGGA + YLPMDPVFPKDRLEYMLENAQVPIILTDSIIKETLPANQAKILCIDEEWNKISVQSAE + KPENRVTQDNLAYVIYTSGSTGNPKGVQIEHRALTNFLLSMGTSTNMCEKDRLLAVTT + LSFDIAGLEMLLPLVTGASVIIAGRDEVIDGEKLIALMDKHDISVMQATPATWRLLVE + EEWQGCSSLKILCGGEALPRDLANELMVRCSCLWNVYGPTETTIWSTMVRLNSKEGQV + SIGKPIANTTVYVLDNEMKPTPVGIPGELYIGGTGLARGYLKLPELTQEKFIPNPFSS + EEGSRLYKTGDIVRFMPDGNIEFIGRGDHQVKIRGFRIELGEIETLLNKNPLISQSVV + VCREISLGEKALIAYVIPKSQETAATTFREYLRNRLPDYMIPSYFVILDSFPMTPNNK + IDRKSLPMPEKTAIGASSVMMQPLNDVQKTVSDTWKEVLGRENIGLNENFFDLGGHSL + LLAKVRNKIFKKMNIDLQIMDLFKYPTVNTLSEYLEQRLGKKTAVVHSKTSMPKTTSL + KSNDIAVIGMSARVPGARNIKEFWANLCQGKESITRFSDQEIIAEGIAPELLKKPEYV + KAWGVLEDAYKFDAQFFGYNPREAEILDPQQRVFLEEAWKAMEDAGCDSERFNGAIGT + FASVGMNTYVKNLTENNESGNVANNYQIMINNDKDFLATRVAYKLNLEGPGITVQTAC + SSSMVAIHLACRSLLNRECDMALAGGVSIRLPQKTGYLYQEGMILSPDGHCRAFDEKA + KGTVGGNGAGVVVLKRLEDAIAEGDNICAVIKGTAVNNDGSLKVGYTAPRIEGEAGVI + SKAQELAGVSPETITYIEAHGTGTPLGDPIEIEALEKVFSEKTDKKRHCAVGSVKTNI + GHLDAASGVIGLIKTVLAIQNSKIPPSLNFDKPNPKCDFENGHFYVNTKLWDWKTDGI + PRRAGVSSFGIGGTNAHAVLEEPPLKRNATPGKSRVLLIFSAKTLSALKRMTSNFALH + LKENSGTDMNDAEYTLKLGRREFEHRCCLVCSTREEAIEAIENDNLIYANDIKNDKSY + DTARVKEYTEEELGLFWLQGEKIDWISLYEGQVRNKLNLPVYPFEGQSYWAKTQKADR + RNINDYFYTPLWKQTVCNIPSEITLTENKNCILVLAEKNTFENKFVELLRKSGAEVIE + ASPKQQLDYDTLLKELGNIEKMPNKIINMLGISNENRGKDLFYSMLFLAKALGKQEPK + KEINIIVLTNGMQKVFGESVLFPDKALVLGPCRVIPREYEKIKCRSVDFTLCEEGIPF + ERELLEQLLYEACSDSEDTTVAYRGESRWIQSFDKIKLQNTQKPPLRIKNKGTYLITG + GLGGIGLVLAEYLAEREKINLVLVGRSSFPDMEKWDEWLKDKGETGKTSIKIKTLKHI + KELGSEILICRGNVDNMEEMTRVRQQVQNHFGKIDGVIHAAGNPGGGMIQIKEESFVE + NVFAPKITGTQVLYEVLKDCKPDFFIMSSSLNSITGGFGQADYSAANNFMDAFANAHD + TRHGTRFVSINWDRWPGVGMAEDNKKSIHPLLERKITDSLGRVAYLSRLNPKKDWVLR + EHLVMGIPTIAGTTYIEMARAAFADINGDKSVEFTDVTFLTPMAVRENEEQDVLTILE + KNEAYYEFKIVSRLHSKVEDSPWKEHARGKIAAAIDPENKQIDISESTEIFNQETFDY + INKDIKEFITFGNRWRTLKRLGFHGTKGIAEIELSPEFIDDLKYFNIHPSLLDVATGS + VRLASKRNFLPVSYEKIIVKQRLPKKIYANITFKDEYNALNEIITCDIDVVDEKGVQL + IEIKNFSMRHITDENSQNIKNRKQSFHTLIEGTDIYNSLFNSSNSDNIMDSGLTTDEG + RKVFEKILSGQYYNTQVIVSTKDIEEAIAEAGYINKKSNTTVIEKEEQKTLHPRPDLP + NAYSAPKSETEKKLVPMWQNLLGIEGLGIHDEFFALGGDSLLLVQLHSKIKEVFPTDL + AVVDLYKYNTIALLASKLDEGNNRVEKPSFKSVSQRVSKQQERLKQRKQRMMIQRGEN + H" + gene complement(2740133..2741431) + /locus_tag="Ccel_2332" + CDS complement(2740133..2741431) + /locus_tag="Ccel_2332" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76668.1" + /translation="MKRLLVGLLIVLLVFQTACTQEISVAKGSPLYKGSGVTITDKGN + YFNVALDFTKGLSHRDIGKEFARGILSVVPDYEALVDSYIAENLFKSEYKEAFWRVED + LKAQIDKNYREEIEGMSEVFSGGDKNVRGDNKISKDEFFMFNLFLDMIRSTQCSFVSV + FGSKSTTGKTITGRILDWYGGNKNQLPRIQAVITMKNTKGSICSIGYMGFMGIITGFN + DKKVFAAVQESTSGAAYSSAGKRSYPLDLRYALETTENMESTIEFMKDKNKQYAANHL + IVFSDPDESKVLENNFSGRGTGAVRVRRAVRMDESKLNKGITWGIKDAVASVNSFILE + GNTDNHTRNKFNTRRWKYIKDQLSGRQSNFSPEDIKKIMTYTKGSPRALLDTRYLYTK + ATLSMAVFQPDTLKLEIYFFPRNTLKVPDKPTFEEISVFQ" + gene complement(2741445..2743397) + /locus_tag="Ccel_2333" + CDS complement(2741445..2743397) + /locus_tag="Ccel_2333" + /inference="protein motif:TFAM:TIGR01194" + /note="KEGG: bwe:BcerKBAB4_1783 cyclic peptide + transporter; + TIGRFAM: cyclic peptide transporter; + PFAM: ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="cyclic peptide transporter" + /protein_id="ACL76669.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005898" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MISDGVFFAILCISAVVCSITIFYIVISAKEIVCRKRFFKGRGI + KGLINFVLSLAFIGCMGYCLYNVPEILFFGSSWNSIEKVGPDNVKKVVICLSVVISIL + YIYFVLNSFFHKPNDKPYFMVISLSIISGIGNSIVVFIINRALGILAGDVEKWAIIES + RLYIFFICGILLFTVAAMIVRKKLISVTNNIIYEKRIQIIDKILKAPYIKFSSLEDGS + VYAALNNDTETIGNFVGHLVAGITGVITLITCFIYLAILDKRGTLFFLIVLVVTIGVF + QLAVSGAQKFFEQNRNYQTTFFKNIKDLVEGFKELYINTRKRMGFRRDIEDSCKAYRD + SRIAGDFKFTNVTILGEILYTGVIGVIVFTFPILFDIQITTLQNFVLVLLYMGGIINE + ALFAIVPTCMRVIVSWKRINAFANSLSADENYRDSECQDTHTNLTIEFRGVRFTYKNE + NGESFSVGPLEYTFKFGEIVFIMGGNGSGKSTLAKLLTGLYLPDEGQVLVNGQKVNPR + ELGAYFSSVYSDYHLFEKLYGIEYKDKIGDIERYLKILGIDNKVEIKDGEFSTLRLSS + GQRKRLALLISYLEDRPAYLFDEWASDQDPEFRKFFYKTLLPELKARGKAVVAITHDD + KYFDEADKIIKMDMGKIVSSIISVNV" + gene complement(2743629..2745011) + /locus_tag="Ccel_2334" + CDS complement(2743629..2745011) + /locus_tag="Ccel_2334" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + KEGG: cth:Cthe_1909 copper amine oxidase-like protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL76670.1" + /db_xref="InterPro:IPR012854" + /translation="MKKNLLLIIFLFLIVTGTASARVYAENIKTVQTPSFDFEARPII + IKKEPFLPIKPVLESLGWKIIWDSKNKTVQAFKGENTLIIKIGSNVATINGNAVLQNN + PPVIIKGISYVSSRFIAQEFGTKVRWNRKDNLIIISNRDTENIKVSGQGNIIVAGDGI + IVNIFEPYGIDIVYDQIDDADQLLSAKKPQEAVTKYKNILENISEKENPNIYCHIMNN + MGNAYNVIAGFRDTENNSRNAISAYSNALRIYSSDKRSKNYFITLNNLGNAYFNSWEL + SREKADLMAASDIYVEIQKSGCLDDAYIESALIDYNTGMVYDSLGKKQMAVESFIKAQ + NKYLLLLKKVNKEEKEEIWALLQYNLGNVLKSLSFIIDREKNAKKAVSAYENALTVMT + VESYPLEYAQIHKYMGDIYKVLSSLDNNKREYALRAIEEYTESLKIYTSEEYPVCNQR + INLELETIFH" + gene complement(2745034..2747838) + /locus_tag="Ccel_2335" + CDS complement(2745034..2747838) + /locus_tag="Ccel_2335" + /inference="protein motif:PFAM:PF07833" + /note="PFAM: copper amine oxidase domain protein; + SMART: Tetratricopeptide domain protein; + KEGG: cth:Cthe_1908 copper amine oxidase-like protein" + /codon_start=1 + /transl_table=11 + /product="copper amine oxidase domain protein" + /protein_id="ACL76671.1" + /db_xref="InterPro:IPR012854" + /db_xref="InterPro:IPR013026" + /translation="MKKLLGILTFALIIITLITSAGANSDRIKVKIENKPIEFAMPLQ + LVGNQLFVPFRETMTLFGYNVSWDKKTKTAAAIKNHKQITAKVGSRELTADGKKISFG + AAAYLYKQRLYVSVQVIESGLNKVIKWDSSENTLYISGQNTININVENSNESVIAVGN + NILVNISNKYGVNQINDMINDADKILENNNFTEAIGLYEKILENISSSENPEEYGRTK + VNIGNAYNRLAAIIHEEDNAKKAMMAYGAALKVSTPEKNTTVYAAAHNGLAYSYIILA + QVRDTEKNISKALDSYAQALKIYSQTTYPQEYAQIQNNLGKAYIVLSGVKDRQKNLET + SILYCNEALNFFTPEKNAWENIRIHNTLGLIYTGLGMIADTQNNISKAFKEFNTVLEV + CSVDKYPDEYAYVQNNVGQCYGKLSDIKDREENSIKAIKAYNEALKVITPEKNAINYA + VTNMCLSYAYVRLSEVRDSGENLTKAAAACNESLKVLTIGRYPLSYAGAQNRLGTVYF + SLSDISSKKDNLTKAISAYKEALKVYTPNKYPLDYSLNLYSLGKCYRILSEIDHSEAN + ITKAVEMYNEALQIITFEKYPMYYADVKNSLGNAYRYMYSLTFQMDNLYKSLDAYNEA + LRVDTFESQPMSYAVIQCNLAYTYMYLGDVLDDEEIINKSIQASREALKVYKFDKYPL + LYADTVINMGSAYWAMSEVRDTVENLAKTRDSYEESLKVYTLDKYPLDYAYSQYCIGY + VCTAIAEASPSEDTIKKGLEACQEALKVYTFEEDSRYYIEVRANQAALYVRLAQLKGS + EDILKNSQEIYHELQSYLTDENGLINDPGINLDMGFMYYVLSKLKEKEENLTSAIEVY + QKAETMVQEKDNPAMYAKIQKQLGVCFLEMSDVKDKQENLKKALKHFSAAINYIKNPS + DLEQINVYIKRLRKDLNIHN" + gene complement(2747908..2749014) + /locus_tag="Ccel_2336" + CDS complement(2747908..2749014) + /locus_tag="Ccel_2336" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1910 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76672.1" + /translation="MEDNYFNIKNILGILFKITKKNANILADRYLLKEVSIISKWKNN + KADIKAEDIIRIVDFAVKESSEVQRKMIRKEIVTLINTSPITDEIKEMVVGIKDFGEF + LGESLNVCTSWSYDVPDVINKSAIGEKTGSGSEYKVNQENGIEGDYKGIVRFDLQLLK + NKGDNQIDTDSKKSTTLKNGKINLIPRSKLGDVKKYIEAKNVFTVIIIVAILSYTLIQ + TGGSNKKVASDINHTQSYQSTYQENGPAKAGRGDTSAKAEQAAPSKKSDKKETNERRE + ADNNKQKKSPVQVDKSKDKTINKSETNNNVNTKSNQQNNDININISGSSDLNIGVGNN + IIISNNNSNQASSPSNPKPETATSSATATHASEK" + gene 2749414..2751033 + /locus_tag="Ccel_2337" + CDS 2749414..2751033 + /locus_tag="Ccel_2337" + /inference="protein motif:PFAM:PF00150" + /note="PFAM: glycoside hydrolase family 5; cellulosome + protein dockerin type I; + KEGG: cth:Cthe_0536 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 5" + /protein_id="ACL76673.1" + /db_xref="InterPro:IPR001547" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MKKTISVFLALIMLLTLLIPSVTKVSAAEPGVAESGDDWLHVEG + TNIVDKYGNKVWITGANWFGFNCRERMLLDSYHSNIVADIEIVADKGINVVRMPIATD + LLYAWSKGEYPASTDTSYNNADLTGLNSFELFNFMLDNFKRVGIKVILDVHSAETDNM + GHTYPLWYNGTITEEVFKEAWVWVANHYKNDDTIIGFDLKNEPHTNTGTLKMKSQSAI + WDDSTHANNWKRVAQETALAIMKVHPNALIFVEGVEMYPKDGLWNDESFDTSPWTGTN + DYYGNWWGGNLRGVKDYPINLGAYQKQLVYSPHDYGPMVFEQEWFKGSFPTCDDATAK + KILYEQCWRDNWAYIMENGTSPLLIGEWGGLTEGEDKLLEANKKYLRSMRDYILENKY + QLHHTFWCINIDSADTGGLLTRGEGTAFPGGRDLKWNDNKYDNYLYPVLWKNSEGKFI + GLDHKIPLGKNGVLLGSPDDEPTINYGDINKDGQIDALDVIALKSYILGINQNIDTQA + ADLNKDSSIDALDMQILKRYLLGQVTQLPLG" + gene complement(2751120..2757053) + /locus_tag="Ccel_2338" + CDS complement(2751120..2757053) + /locus_tag="Ccel_2338" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cts:Ctha_1865 filamentous haemagglutinin + family outer membrane protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76674.1" + /db_xref="InterPro:IPR011493" + /translation="MCETDNSVNTIGSTTAPNEQTPAGEQTPAGEQTPAGEQTPAGEQ + TPAGEQTPAGEQTPAGEQTPAGEQTPAGEQTPMDEQTPADEQTPADQLKPQSQIQTDQ + ALYDAWKKGLFVEENNKTNLLNLMGYSNGKVYNDYLEYAVANGGSYNGRFTIGTTGGD + PSISTDDNQILLYNHPEPHTSFSTIRVDGNDYVYNPNIQSPTVDETQLSNTSESNFSN + ISVKQVLRIVKNSSTNREDIVEVKYIVTNNDNNQHDVGIRIMLDTKLGNNDSAPFRVP + GIGAVTKELEITGNSIPQYWQAFDNLNSPSVVAHGTLLKSQYLKPDKVQFVKWSGINN + SLWDYVPNTSQDIGDSAVGIYWNPRTLAPNGSAEFVTYYGLSDLTQVSNGAFGLNLTG + DSNIDLLAGGYNPNPFMVTAYVRNNGDTSISNTKVKITLPVGLVLSSGQQQEISLGAL + TTGLEKQISWKVEVVPGTASGKLNYQVTVTGDNTSSVTASRVVDIAPIPSMQGSGSVD + DPYIISTSDQLGAIRYNLTAHYRLSNNVNFGGEEWTPVGSISNPFTGSFDGNGYTISN + LVINQPNSDYIGFFGYTSNAAVRNVNISNVSISGRNYVGSIIGYATGGTGSIEGCSVT + GTGAVTGTGYIGGLVGSFYGSIRDCYSTMNVGSTGSYAGGLVGYLSYSESNLPGIIRC + YTTGNVSSTSSIVGGIAGYCSGNITESYATGNVKGTSYIGGLVGQANLAFSYSSITYA + CTISNSFSLGSVTGTDTNSYAGGLLGYVSGGTLKNCYCTGSIITSSKGGYTGGIIGYI + SSVTMTGCYYDSFASRYIPQDSYDIGRLTSGMTKKSTFSGWDFSSVWSVEKGISYPYL + KGLPKPARVSINLPTGDVAGGDGTPENPYVIENAAQINNIKFDIQSSYILYNDVNLEN + MEWTPIGTNGAAFIGSFDGNGFTISNLSINQPTLDNIGFFGYTNNAVIKNLNIINASI + TGRNYVGALTGYAAGSSGSIDDSSVSGTGTVTGTGYVGGLVGSFSGNISGCYSTINVV + SGTGGYAGGLVGYCINNTNFIPSINRSYAAGDVTGNGSSIGGLVGSCAGNIAECYAVG + NVSGVSYVGGLVGQANLNIYYNSTYYTCSISNSFSLGNVIGTDANAYAGGLLGYVYSG + VLKNCYCTGSITSKGSNTGGIIGYGSPGTMTGCYYDSVASGYIPQDLYDVGRLTSGMK + EEDTFGSWDFTSIWTIETGSSYPYLRSLQKPTGVSSDLPSNEVAGGNGTSANPYIIKT + PQQLNSIKYDLQSYYKLGGNIDLENKEWIPIGKNGVAFTGRFDGNGYTISNLSINQPT + LDYVGFFGYTENATIKNLKIVNANITGRNYIGTLTGYSAGSSGNIMNCNVTGEGTIYG + TGYVGGLVGSFSGNISGCYSTVNVVCGTGGYAGGLVGYCINNTNFIPSINRSYAVGDV + TGNGSSIGGLVGSCTGNIAECYAVGNVSGVSYVGGLVGQANLNIYYNSTYYTCSISNS + FSLGNVIGTNANAYAGGLLGYVYSGVLKNCYCTGSITSKGSYTGGIIGYGSPGTMTGC + YYDGVASGYMPQDLYDVGRLTSAMTKQSTFGGWDFTSVWTIEPGISYPYLRNITKPHM + SNIPMNEVAGGDGTSANPYIIENAAQLNSMKYDLQSSYRLNGNIDLENIEWTPIGTYG + ASFTGSFDGNGYTISNLAINKPTSDYTGFFGYTNNAVIKDLQINNVSILGKSYVGSLI + GYAAGSSGNIQGCSISGSGTINGTGYVGGLTGYFNGTIDKCSSTINISCGTGGYAGGL + AGYCTVATGTASRPSISKSYALGSVNGTGSYNGGLIGNCTGNISECFAMGNVSGVSFI + GGLVGQASLNFYYGSTYYTCQINDCYARGNVKATNSSNGYAGGLIGYLYSGILKNSYS + AGKVTGAGSTVGGLHGYVNSTTVTNCYFDSVTTGLTTPTAQSRSTTQMMQQSNYLNWD + FSNVWNIVVGGSYPSLRNI" + gene 2757259..2757669 + /locus_tag="Ccel_2339" + CDS 2757259..2757669 + /locus_tag="Ccel_2339" + /inference="similar to AA sequence:KEGG:DSY2854" + /note="KEGG: dsy:DSY2854 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76675.1" + /translation="MVKVFLSCSSHDQTYIKYIINDLQSLPEKYKLFYFLPPYKKDIP + IDNIIKTLYEIDLFILFITNNSLNSQFVQRELRQAIYLNNLSTIKEICSISLDNSINV + FQDSRIPEYIKNRIHLSESPLKTVQIVRNFIMNY" + gene 2757679..2758119 + /locus_tag="Ccel_2340" + CDS 2757679..2758119 + /locus_tag="Ccel_2340" + /inference="similar to AA sequence:KEGG:Paes_2303" + /note="KEGG: paa:Paes_2303 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76676.1" + /translation="MNDKNRFYAKNYLYRNLNYYDKKAASNKKLYNLFVILDIVISAF + IPFTALFNDVFFQTKYIVALMGSFITILSAFKTSFGLHKKWVEYRTTAEILEYHKRLY + LTESTPYNKSNKHELLISNVNSIVEKENRTWRSAELSIKKPTRN" + gene complement(2758124..2758402) + /locus_tag="Ccel_2341" + CDS complement(2758124..2758402) + /locus_tag="Ccel_2341" + /inference="similar to AA sequence:KEGG:CLI_2416" + /note="KEGG: cbf:CLI_2416 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76677.1" + /translation="MAKYIKNPIPIEAIEYRRGLEDGFDDIQTAINAGLDTENYVNPD + TCNEIPFITTLEGKHYISKGDYIITGVDGERYPCKKEIFLKTYTILNV" + gene 2758585..2760936 + /locus_tag="Ccel_2342" + CDS 2758585..2760936 + /locus_tag="Ccel_2342" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + KEGG: cdf:CD3195 putative excinuclease ABC subunit A" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76678.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR017871" + /translation="MNDFIEIKNARIHNLKGIDVKIPKNKLTVITGVSGSGKSSLAFD + TLYEEGKRRYLMFSGTQFMIDSTPTFDSISGLSPTVAVEQRIIRQSNPRSTVGTRTKI + GNILAMLFAAYGTRDSKYDDGLPLSMEMFQKNSPKGMCVKCLGSGTVKKVDEDKLFGD + LSLKVEDVCLGLGKRGSTKKMLDSFYKYHNISPDQKLSSLTDEQLFCLKYGDSGKSSF + MGFIPWIFHVTNGAFSTNSRLSHLLTEAGYMTKPSCPKCGGTGLGVHASSTTIGGKTI + SELENIYIKDLFDFLNTTPLKRSPLLNEILTKLSCMVDVGLHHLSLSRPVPTLSGGEI + QRLFLASYIIAEMDSIIFVFDEPTIGLHEVEKEKLISIIRNLVNRGNTVIAVEHDENF + MRCADYIIDLGPFAGINGGERIFQGSFEEFLQCKHSNTAPYLKNNDILNMKSTYRTVN + SDKILKVENANIHNLKNVTVDIPLGLMVGVAGVSGSGKSSLISDTLVPKLKILLNNKF + VGDQNEDNEGIPEDNSVISGWERIKKCLVIDQKPIGRSRTSCPATYTGVFDRIRALFA + KESGSSAGLFTVNSEGGCKVCKGDGEVHYHVGFGNFIDTECEACSGTGFIPEALEVTL + NGKNIKEVLSFTVDEAVLFFKGRDKQIDKILATLQRVGMGYITLGQKTPTISGGESQR + IKLAKELSKGQAAKDAVYILDEPTTGLSFHDSVRLMKLMEELVTKGNTVIVTEHDPYI + LSNCDYIFEMGPGGGSDGGKLIAAGSPVDLKNNQNSIIGRYLK" + gene 2760933..2761862 + /locus_tag="Ccel_2343" + CDS 2760933..2761862 + /locus_tag="Ccel_2343" + /inference="protein motif:PFAM:PF00144" + /note="PFAM: beta-lactamase; + KEGG: bcy:Bcer98_1900 beta-lactamase" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase" + /protein_id="ACL76679.1" + /db_xref="InterPro:IPR001466" + /translation="MKNVLSEYIDNYIKQKHYRLINSILLFRDGEPVLKKYYNNFNEN + SRNNIKSIWKSILSICTGICLDKGYIKNLDEPVSNYLSEFAANNHPYHKLITIRHLLT + MSSGIYWNGGIHYHCPMLEQLWRSDNCLEHLADTAMANVPGTKFVYKEWDVILLSGVI + SRAANMNTYEFCKSYLYEPLGITRGEWARLPGGIDYSIDRNFDIEAQSDLSAGDLAKI + GFLLLNKGNGILSESYINQAVLPSTNTPEYGYLFWLFEGGFACRGYGGQEINVVPGKN + IVYVIQATPTSRSKSYGDVFKVCLDLMDNGNML" + gene 2761905..2762807 + /locus_tag="Ccel_2344" + CDS 2761905..2762807 + /locus_tag="Ccel_2344" + /inference="protein motif:PFAM:PF01070" + /note="PFAM: FMN-dependent alpha-hydroxy acid + dehydrogenase; + KEGG: cpy:Cphy_0123 FMN-dependent alpha-hydroxy acid + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="FMN-dependent alpha-hydroxy acid dehydrogenase" + /protein_id="ACL76680.1" + /db_xref="InterPro:IPR000262" + /translation="MKQNTPHNYRTGDSNEITRQYFDSLLIEMRHIDSVIPSTTFELY + GENFSTPIMTAALSHLNNSRANGMVEMAKGAMAANAVMWTGMGDDAELEAITATGAKT + IKIIKPHSDNNTIFKKIEHAEKCGVLALGMDIDHSFNNKGEFDNVLGLPMSGKTLDEI + KEFVNATKLPFVIKGVLSEKDIYKCLEAGVKGIVVSHHHGIMDFAVPPLMVLPKIARV + VDRSIPIFVDCGVASGIDVFKALALGADAVSVGLTLIPHLNEAGADGVQNVIEEMTQE + LAGVMARTCSKDIASIDSSVIWNI" + gene complement(2763140..2763631) + /locus_tag="Ccel_2345" + CDS complement(2763140..2763631) + /locus_tag="Ccel_2345" + /inference="similar to AA sequence:KEGG:Cphy_2165" + /note="KEGG: cpy:Cphy_2165 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76681.1" + /translation="MSRYEEGLKLIEERCGNGKDNVISLSTIAMEPNTDGKPRPYVRD + VDAHYEDGVFYVTTWATSTKMQQIAQNNEVAFSVCLEWFSGNGIGENLGWVLDPKNAE + LRTKLRKTFAKWYDHANNEQDENCVILAIHITRATVIKDHGAVRYNMDFVNKVETEEA + KIR" + gene complement(2763702..2763863) + /locus_tag="Ccel_2346" + /pseudo + gene 2763985..2764145 + /locus_tag="Ccel_2347" + /pseudo + gene complement(2764149..2764961) + /locus_tag="Ccel_2348" + CDS complement(2764149..2764961) + /locus_tag="Ccel_2348" + /inference="protein motif:PFAM:PF06182" + /note="PFAM: protein of unknown function DUF990; + KEGG: cau:Caur_0437 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF990" + /protein_id="ACL76682.1" + /db_xref="InterPro:IPR010390" + /translation="MERILKAIKKHIIVYWIFVKNNIMAQMEYRVNFFSGIAMEIGYL + FVKLLYVIVIFRSGANINGFTPNELLIFAGTFIILTGFHAGLFMVNFISMRTLVREGM + LDFYMVKPVSVQFIATLRRSDMGLFVTDVTAGIILVALGVIRMKLSLTILQILGYAMF + IACGVAIGYSLFLIPQILTFWFINTSAIGETFNSFWDINNVPMVVFGKWFQRIGIFVI + PIFVVTNFPALFILDKMSPLYFAWGLIAPVVAFVLVRLLWKVAIRNYSSASS" + gene complement(2764969..2765778) + /locus_tag="Ccel_2349" + CDS complement(2764969..2765778) + /locus_tag="Ccel_2349" + /inference="protein motif:PFAM:PF06182" + /note="PFAM: protein of unknown function DUF990; + KEGG: fnu:FN0879 ABC transporter integral membrane + protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF990" + /protein_id="ACL76683.1" + /db_xref="InterPro:IPR010390" + /translation="MRSSNKYLFSFQIGMQNAMEYRANFFLSILAAIVPIFIQTFLWI + SVYKNSGNSVVFGYSFAQIIQYTVIAQLVSRFVRTDFEAEINEDIKNGGLNKFIVRPI + GYFTHKLCCFMGQKVVNLVVMMILFITSILVLKFSLGVVLTGQAMAAFTISLILSLCL + NFLIFFCVSTLCFWLNEIGFIFEAVRIIIITLSGGIFPLSIFGAKVVSILDLMPFKYT + INFPVDVLNSQITGWGIARGLCIQVGWILCIALLANIFWLIGSKKYIAVGG" + gene complement(2765788..2766762) + /locus_tag="Ccel_2350" + CDS complement(2765788..2766762) + /locus_tag="Ccel_2350" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: rba:RB5056 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76684.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSEIEVRLLSKQFSYYEKQTGLGNSVKNLFHREKLYKDAVKEVS + FEIQAGEMVGFIGSNGAGKTTTLKMLSGILFPTSGEARICGFVPWERKVEFKRNISIV + MGQKNQLWWDLPASESFYLNKCIYEIDNKAYSQFLEELAELLDVKHLLNIQVRRLSLG + ERMKMELIAALIHRPRVLFLDEPTIGLDIMSQKKIRNFLKYYNEQYKSTILLTSHYMK + DIEDLCRRAVVISKGAVVYDGELARINDVFRGKKLIRLQLSRQVELPVLKSFGELLET + DGKSATFEVYRQNALQLTKSIQDNLPVEDFNIVDVPVEDGIAMLLQKG" + gene complement(2766871..2768151) + /locus_tag="Ccel_2351" + CDS complement(2766871..2768151) + /locus_tag="Ccel_2351" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: cobalamin B12-binding domain protein; Radical + SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cpy:Cphy_3574 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76685.1" + /db_xref="InterPro:IPR006158" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MNKEVRTVLINLPIPFVDDDERQPPGGLVSIATYVKSKGFDIKV + CDLSGVLEDNLIDYIEEAEIYGIGTYSATYGIAQKLLGEIREKYPKSIVVAGGPHASA + LSEEVARDFDVVICGEGEYVFYDLIKKVKEGLMPERIIEAEVIKNLDDLPFPDYGYFC + NMSKYTRRIDNMPVICLDSSRGCNFTCRFCNSNVSKRGYWRARSPESVIEEVRMHYDK + GWRAFRFNDDNFLADPKRAMKICQLIKPLNIKWRIFARAESLSLDICRTLLDSGCTHI + SVGIESLSASMLSKMGKATSIERIKWGLNNAFEAGIRTRGFFIVGFPGESNETISETI + KSLEDLKLGEATVYPCLPYPGTDLYSRPDHYGITWIDRDFSNYIQVGKEKLTGYAIRT + NTFGPEDMRRWRDILMDALKQNNINWCDETKEVV" + gene complement(2768169..2769866) + /locus_tag="Ccel_2352" + CDS complement(2768169..2769866) + /locus_tag="Ccel_2352" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: NUDIX hydrolase; Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: mgi:Mflv_5060 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76686.1" + /db_xref="InterPro:IPR000086" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKTYKIREEKEGAMLFDSLTGSTSYLTELQYQSILGNNSDEFKY + LFTENNTPLFSIFRPEKDREALPSDCLSAPSKVYFEITRRCNLKCVYCYNNSRKDFSK + ELEKEQIFRLIDELYEAGTFEIRLTGGEPTLHPDFFEIVKYIKSKNFFISLGTNGVWR + DGLIETIGQSGIRVVIISLDGTEEYNDQSRGKGTFKAITNTIKQLKKFGNITLKINSV + ICRENRDQLEKIVALADELGIDGVNLAPLRVSGRADGSEYGTPLLPADMYSVVAKVTE + LRKKCKVKIQTYYDIIEAPDLSEKFPSSLLNKKSCAAGIEVAAISPFGEVYGCVVSPA + NETEDTPAKRLFTAGNLSDGNFIDIWLDSSRWNVYRNLSINKSSKCLECNHYKKRCFG + NCVVDSYSQGGSPNAESPLCFIDIMYKKACPPEKSKVHKIGTAIIIEDSQGKLLLHHR + DCNPKIKYPGTWVLFGGGKEFGETPEQAIRRELMEELNLDISNFIFYGNYHYNDEEEE + HLQFVYHMKMDLDISRVNLNEGAGLGYFSRDEINKLQLGFNIRDIVEDFFKRQSIFK" + gene complement(2769868..2770851) + /locus_tag="Ccel_2353" + CDS complement(2769868..2770851) + /locus_tag="Ccel_2353" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: tme:Tmel_0507 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76687.1" + /db_xref="InterPro:IPR007197" + /translation="MINLPAGFSSEEQYQFPNIINVCIFKGECSANCVHCPIGITAIS + ERKEKFGSGSMTLEVFKKIADEVAAYPHCTLRIHSVGEPLMWENLTAAVKYAHSKGII + TWIFTNAVTTDKKLLETVVSECSVVEVSVNSVDSLDYIETKGVDAFELVKENVEYMHK + YIKENHLNTRFLLSRVESDDKEYDQKFLSYWKQTGYADDIFVRSYHSYNSLIEDKIKD + NKVVACHVHWGRFNVDTNGEVVVCFNELFKGPEMDRTLVLGDLKKQSIQEIWHGEKLA + KIRTSQIENKPELVDFTNNLPCGNCTYCQPLFSDSVKSENQINYILNSRNK" + gene complement(2770902..2773292) + /locus_tag="Ccel_2354" + CDS complement(2770902..2773292) + /locus_tag="Ccel_2354" + /inference="protein motif:PFAM:PF06165" + /note="PFAM: putative carbohydrate binding; + glycosyltransferase 36; glycosyltransferase 36 associated; + KEGG: dth:DICTH_0484 N,N'-diacetylchitobiose + phosphorylase" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase 36" + /protein_id="ACL76688.1" + /db_xref="InterPro:IPR009342" + /db_xref="InterPro:IPR010383" + /db_xref="InterPro:IPR010403" + /translation="MNYGYFDDCNKEYVITRPDTPTPWSNYLGSMEYGALITNNAAGY + SFVKSGSEGRILRFRFNSVTQDMPGRFIYIKDQNSGDYWSASWQPTGKELSDYKSVCR + HGTAYTVISSGYDKISSETLYYVPLGQNHEVWHFKIRNNDTKRRKISVFSYAEFTSDN + SSMLDMENIQYTRFLSRTYFKDNYILQSLKELTEERVFRFFAASGGVKVSGYDGSREK + FVGPYGSYSNPLALKNGYCSNSLNYTGNSCGSLQIDLELLPSTEKEIVFILGEGNEET + AEMKVKHYKGGGVVEEELAQLKAYWHGKLEVFQVKTPDSAFNSMMNVWHSYECFVNTF + WSRTASLIYSSLRNGFGYRDTMADIQSIMHLDSKLAGERLVTMLSGQVSNGGALPLVR + FDHKPGAEPVPGSSEYQEKTGYKEYRCDDALWLFQAVPQYIRESGELDFLNKIIPYSD + KGEDTVYLHLKKALNFSLERLGRHNLVLGIDTDWNDCLRLGENGESVFASFQLYLAIC + EFKKIALSNGNCEDVDWAETNRKKLYDSLQKYCWEDGQFIRGFTGDNQVIGSPKSKEA + ALWLNPQTWSVISGVATHDQAKKALDKVHDILKTKYGAMLFYPSTKTIGPPIFLMSLY + PPGIKENASIFLMAEAWIIQAEAMMGHGNRAWDYYNSTNPAAQNDSADLRHTEPYVYS + QFIDGLESPNHGRSHGHWLTGSASSIMTAVVEEILGLKADYDGLIIDPCIPSEWKEFS + MVRHFRGRKLNIIVQNSGGVEKGVKKISINDKTILNSCLIPLDCMEAVNTVQVIMG" + gene complement(2773479..2776529) + /locus_tag="Ccel_2355" + CDS complement(2773479..2776529) + /locus_tag="Ccel_2355" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL76689.1" + /db_xref="InterPro:IPR003838" + /translation="MINLLYKNTLKKIKKSFGRYISLFIIVMIGVGFFAGIQATTPDI + IDVADKYYKESNLLDFKVVSTLGLTDQDVNAIKKLSNVGAVIPSYSLDVLDTDKATRV + HAIEDKVNTFKLEDGRMPQKHDECIADSKTYKIGDKIKITSNTDKKLKIKEYTVTGIV + RSVLYLAEDYGNTTIGDGKLSSFIFINKDNFILDAYTEIYLIAAGTDKTEAYSKEYDT + EVSKLKDELLKIKSDRENARYQEIYTKADSEIRKNETKLNDEKKMGQKKLADAKATLD + ENAEKLEKGKSELIANEAELKRNTEKQNAEFASAKEKISAGWKDINNALDQNKIKKEE + IDTKINELNSAIRVMKAQLSQLPVESQEYIRLNATINQYSEMQKGLLKLKQSITTLTA + QEAKLDNGIDTFNSEIAKAKRKIEQGKIELAQNEKKLKDGYTEYSKNVEKFNTEIIDA + QTKLTDAKKEVSDIEKPKWHIFGREAAGGYNELKSGIDVVTSVAALFPFFFILIVMLM + ASNSMVRMIEEERSELGTLTSLGYKDGSIISTYLFYVLSASGLGAVVGFFTGCGIIPP + LIYSTFRFNLPPLVIKYSMGTFSIILLITFALMSIVTVVSCNKELKQKPSTLMRPVPP + ENGKTIVLERIKPLWGRLSFTWKVTLRNMFRYKKRAFMTIVGVAGCTALLLVGFGLRD + SMNGVAEKQYGEIFRYDNMFILKNEIKNIQGDLENLLTREQVKEPLLLKQTALKCETK + NKSYDAFLIVPANEDVFYKYFNLKTPSEGVQLTLNGSGVIITQKLSEVYNAGKGDTIT + VKDAENNSYKLTVTGVAENYTADYIYMNNQMYNRIFGKAASYNAIVSNHKTDETAFAE + KLIDSGLVLNVVFNGDLIKKVLDSNESLNSIILLIVVVASLLAIIVLYNLTSINISER + TREIATLKVLGFTDEETNGYIYREAFILTLISIGVGLVLGIYIHSLVIDVIGENSLVL + FKKIKWLSFLLAALLTVIFSVVMQIVTYFKLQTIDMIESLKSVE" + gene complement(2776526..2777227) + /locus_tag="Ccel_2356" + CDS complement(2776526..2777227) + /locus_tag="Ccel_2356" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpy:Cphy_2590 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76690.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSLIRFENIKKEYVVGDVRITAVDNCSFSIEKGELVVILGPSGA + GKTTVLNLLGGMDSPSGGKIKVDGNEIHKYNKRKLVDYRRRDIGFVFQFYNLVGNLTA + LENVELACQICPDSLNPKTVLEQVGLSDRMGNFPSQLSGGEQQRVAIARAIAKNPKLL + LCDEPTGALDSVTGQRIIELLQKTCKEMGMTTVLITHNAVIADIADKIIKIKNGTVVD + VIRNENPKKAAEIVW" + gene 2777397..2777969 + /locus_tag="Ccel_2357" + CDS 2777397..2777969 + /locus_tag="Ccel_2357" + /inference="protein motif:PFAM:PF00440" + /note="PFAM: regulatory protein TetR; + KEGG: bha:BH0719 TetR/AcrR family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TetR family" + /protein_id="ACL76691.1" + /db_xref="InterPro:IPR001647" + /translation="METQKTDRRVRYTKMVIKDSLVKFLREKPISKITVKEICEDADI + NRATFYAHYTDQYDLLQRIENEIIDDINLYLKDYDFKENNLADVEIIERILEYIAENA + ELFDLLLNLNGDIKFQREVINIIGQQHFLPIIGSNSMEKEDAEYLYHFLASGAVGVIQ + MWLKDGMKKSAREIAELILKTSINGRTSFI" + gene complement(2778025..2779227) + /locus_tag="Ccel_2358" + CDS complement(2778025..2779227) + /locus_tag="Ccel_2358" + /inference="protein motif:SMART:SM00635" + /note="SMART: Ig domain protein group 2 domain protein; + KEGG: cpy:Cphy_3430 Ig domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Ig domain protein group 2 domain protein" + /protein_id="ACL76692.1" + /db_xref="InterPro:IPR003343" + /translation="MYHLKRNRTARIFICMLLVVTLILPAGLATNVANAAAKPSIQSK + LTIGAGSIVGNYDYYSKDDKYSLKVANSVNKATYSFTSSNNNIVKVKVSGTTAYLTGV + KAGNATITCNQKLNGKTTKVGTCTVTVKNSTVSQDYIPVVPMGTSVSKEVLEFSYRNN + DATYTYVSNSKNFTMKEKLSQFDGMYFISQSFTAKAPGTYTVTVKETYNKSTRTVGKI + KYTVKKATLSGDSSVDLGSSIWAFELINNYRTDVNYLFVFSDKSIVEESKSGDTIYLK + GKKVGKTNVTIYENTKTPDKNKLIGTCKLTVKEVVLEDLDCDFEETELYVGDDPVELE + ISKDPYNAPGTITVSSSDTKVVTVGKLDEDGICLISPVGVGTATITITCGDITKTQKI + TVYDEEDY" + gene complement(2779711..2779923) + /locus_tag="Ccel_2359" + CDS complement(2779711..2779923) + /locus_tag="Ccel_2359" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76693.1" + /translation="MKNGLTRLVTLCLTIILVFVSVTFAYIESSIPTSTRDHSDEHFE + GGVYRGDGGIHYTSYMYTGEISCVYL" + gene 2780180..2780518 + /locus_tag="Ccel_2360" + CDS 2780180..2780518 + /locus_tag="Ccel_2360" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76694.1" + /translation="MLIKNYKKLVLLVILAFTLSGTFLLTPIVNAQVTVMYDTPADGF + DSTLQTSNWSAIGYYWTAAPIATPGKLSVTYDGSTFQADGVTLNSDNYGYGAYSTIMP + PNVKTNIFKF" + gene complement(2780671..2781820) + /locus_tag="Ccel_2361" + /note="ribosomal slippage" + CDS complement(join(2780671..2781540,2781542..2781820)) + /locus_tag="Ccel_2361" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76695.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSACRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene 2781915..2783090 + /locus_tag="Ccel_2362" + CDS 2781915..2783090 + /locus_tag="Ccel_2362" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76696.1" + /translation="MSGYVRATNVVVNPNHLQYGNKSPFGFSVKIDNFDNPCPDKTKT + TLLLNSETNSTDGWKKLEFHFISFPSGSTTLNCHLGNYYGDAKGKVEFAGVTLKEDAS + YRKVSHSDFAAAVPVSQLVNHSVSDLALDNWGLKLNAATQKLKELTGMNLGVSQCFMH + NNQQLDIDYNEPYACAYTGGYPPCQFSTAASDFTMQYAPNQDAVEHGQLHEISHTYNT + DLNRVWNFNDEIFTNVRATYAAVENNLKVVCADSLESYNSPYQGMRYKQLYDSRLAEY + LSNPNQYTRGYELYAMAGIYLRMVYGDSSAGLPPLGWNVFKEFFTNGIRYTPRNTMPL + IPSLTYENDFKVFNDGLDIIAQISGKRVSEIINYIPNGFYWNWYNYPSQYPFKTIKD" + gene 2783616..2783854 + /locus_tag="Ccel_2363" + /pseudo + gene complement(2784217..2788482) + /locus_tag="Ccel_2364" + CDS complement(2784217..2788482) + /locus_tag="Ccel_2364" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; Ig domain protein + group 2 domain protein; + KEGG: drm:Dred_2357 S-layer domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL76697.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003343" + /translation="MKKTISIIVAVIMLMSSFGTSFAAADTTMETVQQTFKDLNGHWA + SDAIYKWSTQGVINGYDGLFRPNDSITRGEMACILDNIMDYQSASKNTFSDLKPGQFY + TNAVLKANAAGIINGNGATLLRPTDKITREEAVVMMAKAFAVNEGTISKTQFSDEKEV + SSWARTSVFGMEAKGYVNGNKGKFNPKANITRAEIVAIINNIVKGYYTKAGTYDDNVT + GTVIIKVPDVTLKGVNITENLIIAEGVGEGDVTLDSVTVKGNTVVRGGGENSIHITGS + SNISNIKIEKNNNKLRIVILDGNTVKEIEIAKGEEIIVTGSVGTLEIATPDVIVKVIA + ANISDTKVVSANASIFVDKESKIKSVSINNSAENTAIKAEKGAVVNTVFSEAETNVSG + EGTVEQVLLKEGANNSSVTTPNTHITAAAGVTGATAGGVPVTGGTSVVNNSTGNGTPV + VTPTPNPGNGGNSGGDNTTPPVTPVSDIRILSKPMTLTAGGTTGMIIAMISPSNATNK + KVIWSSSDTKVATVKNGIVTPLTEGTTVISVVSAADPTKTATTTVTVSPADTTPPVTP + VSDIRILTTPITLTAGGPTGMIIAIISPSNATNKKVTWSSSDTKVATVNNGIVTPLTE + GTTIISAVSAADPTKTATTTVTVGPADTTPPELSDGTVENLGSAAGTTATLKYHATKE + TGRVTYYCLLQDASAGIPTVAEIKTSNIKAAFSGNPVYYTINLTGLTAGQKYTAYIVM + EDVSDNTSNILTITGINPYSNAALEKLNTPSLTLSSNTSGIGGLAYTITTANGAEDSN + VKEYLIEVTPFSALGTPTDKILTLTIPKNSVKGILLLNNIIVAGNSYVARIQAIVTDG + NKAYQNSDISDYTDIAVAQAVTPTEPGMQVEYVSNLNKDSAVKNIQFSYSGYNGALAS + DLTIDTTKISVMIGSEKHQLSKYRKAEKPNEPGTYELLYGTYVKINLTDADYNAIIGD + ANFTSPTGTNKLVADLGWASINGTVSGKASESTIKFSRNLTIVNNSDEYVAKYQLPQN + YHYKLRSDKIQDLGYSVSSITFYSELVTDSSTEPNKGYQITKTITPADSNISFSEDDV + WARLSAAETPTDFAPTGDYYKVSSADTDRVEIVNANDEKTYYKVAQGVAGRINSMLTN + GETVNYTDSLMFKFGDNGTLEAIKVVGDVSIGIDLVGHFAPSGVPVYLDSDTAKLTIS + GGNTIGDIIVTKALKDSYAIYVTGGKVGNITLADGVKLNIQGSEGMTEVGNINGTDTY + TVAIDVNSQNKRKVLVGDIELGNSGMLDLYQNDAGDLSEEYFTIGNVTAITGASIKIP + NSSNVYCNPYGWFMKFEDLADTVTFMIGNQVYTPPTEQVAFSVSDSSLAYYYGVINYY + DSKTWTWRFFFTDAQISEADLEDDSKVFTFSAVNAEHISSLVE" + gene complement(2789000..2789974) + /locus_tag="Ccel_2365" + CDS complement(2789000..2789974) + /locus_tag="Ccel_2365" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76698.1" + /translation="MNTKFKKIAVLFVVVMTTLSLSMNAFAWGKNDHKTCVTDAAASV + GITLSPEEKVALQFGSIFPDEDEYNDPAGKGTLHGTLWTKDKDGYNANYIGNYIYLTK + IADLLGNGKAVAKGTVSQSYGMYANDYTNLNGYITCNATMGVGTGSVGGWTWNEIFDS + IGIPNNAANRRAFIYGVALHVATDVFAHSTWTTDSSGIWRRITHENTGYGVFNSDKSI + GADFSSFKTGRIMAAKEVAGRIITRFKSNPTTIGKVADFIVSSNCFSGTEGKFLIGNY + AYYAYVSGKTTGETNVYNQFFKGDLAYQCAINGGEYSFYGNKQYDNWW" + gene 2790373..2791881 + /locus_tag="Ccel_2366" + CDS 2790373..2791881 + /locus_tag="Ccel_2366" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76699.1" + /translation="MSKHEHNYSNVLRKITADLEIKDVDLAVGIGVTPSTISNWKNSK + SLPYEKDIKRLSKYLMLKLESKNLHANYIDKCLNDVKVKIPESNFNDALTAKKQGKYA + LTLFLILNSLCNSDRKNKSIKVTSNISCVIENNENSVNNVINTEALLSCDKNSEIVSR + KNNKKSFIPRALIIMCIATLSLTILVIVQFNMSSLKTNAFVWSDQDLVTTGIQIALDN + PLEHSQKYFNNLYNLKNNPEEQLVLNFGYVFADIQAGEIETELGGIFYYNYPYGYTAL + HGGYNNSNYMSCYIYLTKVANELGNGNIPEKASTTNTPGLSDNDVQALNDYFANGKVG + GYEWEDIFNTIGIKFETLKPSTLNKYKKIFVFGLALHSATDVFRHSAFEERSKNNWTQ + ITHDKDDKIYKSLSNADNPYYVYGCNINNHIENGYSDIYYAAQQIARKVIARYAKETN + GTIFDFGMPLTYIEDKNFKIANYCLYAKAAGIATLYSKYEVNFEVGNYTLLK" + gene complement(2791952..2792233) + /locus_tag="Ccel_2367" + CDS complement(2791952..2792233) + /locus_tag="Ccel_2367" + /inference="similar to AA sequence:KEGG:CLI_3231" + /note="KEGG: cbf:CLI_3231 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76700.1" + /translation="MNEEIFQRLQKIFFTRFNIDFKSKSTMDYEKHLLGEDWGLKPRD + LLVLFIDIESQFGISISEKEIERGNFSSINNLVRIISTETACKIGCGMR" + gene complement(2792324..2792485) + /locus_tag="Ccel_2368" + CDS complement(2792324..2792485) + /locus_tag="Ccel_2368" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76701.1" + /translation="MRKLGKKLVTKKETLQAFLCNCDSACEYYCRPSPTSGPPSYAPQ + IGLISDRQA" + gene complement(2792583..2793713) + /locus_tag="Ccel_2369" + CDS complement(2792583..2793713) + /locus_tag="Ccel_2369" + /inference="similar to AA sequence:KEGG:CLI_3233" + /note="KEGG: cbf:CLI_3233 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76702.1" + /translation="MGNVGLVYPYNRQFTPFLRYGSLDFKEFRLVAPGGWGMKDKDAS + RADDGEYIGITVKSCFESELEDCDCVVFCDYSLPLDFNKYIYPKILESIHKKKDIICL + IPLEEHIELELKTLCNYEGVKFSYYKNESSQKFYKKFIEESIITIQTIDIPVIFILGT + GEKTNKFDIQLALRKYYLEKGYKVSQIGTRQYCECAGFNSFPDFMFDKTMSETQKVVC + FNNYVKSIEKDEKPDLFIIGIPGGIIPLNDLFVQDFGILAYMVSCAVRPDVCILSVYY + DEYDNSLFEDVNTSIKHKFGYDVDCLNVANVKLNMPESYLHRGLKYFNVSSKDIEELK + AVLNSQNQILFNISNSKDAQSIGEFSESILEKYSEIELVNKI" + gene complement(2793728..2795116) + /locus_tag="Ccel_2370" + CDS complement(2793728..2795116) + /locus_tag="Ccel_2370" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cbf:CLI_3234 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76703.1" + /db_xref="InterPro:IPR000385" + /db_xref="InterPro:IPR007197" + /translation="MCKEYQPFIHMFETNGSKYFYDVNKNSIIGISEELADALNKNDM + EHPKVQSLIEKGFLSDKHVETIIHPEDKFLEYHLNNKINMITIQVTQACNLRCTYCPY + SGKYNNRQHSNRKMSLEMAIRGIDFLWEHSIDCDYVNIGFYGGEPIIEFDLIKESIEY + AKTKFEGKHVNFSITTNGTIITREIIEYFYQNDVVLMISLDGPKDIHDKNRVYADNSG + SFDTVISNITKIKENYPDYFSKVIFNVVADPENDYNCTSQFLSGNEVIQDAIINASEI + NMFYRKENVEISEDYFIKRGYEFFKLFLSQINRFDSEKVSPLVTSRFNMLEKMFNEQM + EITESLPDKYHHGGPCIPGSQRLFMSVDGTFYPCERVSEESEVVKIGHIDRGIDIDKV + RILLNIGKLTEEKCKNCWAIRYCSLCMVSCDNLKELSGKQKLSYCNSVKADVEGRLKD + ICVLKEIGVNFN" + gene complement(2795431..2796231) + /locus_tag="Ccel_2371" + CDS complement(2795431..2796231) + /locus_tag="Ccel_2371" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: ckl:CKL_3445 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76704.1" + /db_xref="InterPro:IPR001584" + /translation="MYWQKRFDRENPDKELEDKILEIHENNKNYGYRRMYGELRNQEF + IVNKKKVQRIMQKLSLQVTSFTRKSRKYSSYKGKVGTVAPNRIRRRFNTHIPHQKITT + DTTEFKYYEVDSKGHMTMHKLYLDPFMDMYNSEIVSFGIDKHPSAVNIMSALNKAIEI + TSDCPYRRTFHSDQGWAYQMKVYSHRLKEERIFQSMSRKGNCHDNSVMENFFGLLKQE + IYYGVVYYSYEDLKNAIERYIKYYNEQRIKEKLGWLSPAQYRLRLLAA" + gene complement(2796273..2796851) + /locus_tag="Ccel_2372" + CDS complement(2796273..2796851) + /locus_tag="Ccel_2372" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: lwe:lwe2186 transposase, putative" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76705.1" + /db_xref="InterPro:IPR002514" + /translation="MAKYSFEFKKQIVKAYLNGEGGYEYLAKQYDIPSFNNIKKWVLN + YNAFGDEGLVRSRKQKKYSFEYKLHVVELYLTSEVSYQELAIQEGIRNPALIVKWVND + FRIAGPDALRPKKKGRKKPLSLKRKVTDTNATESIIVDTSAEYVKQLEDELLKLRIEN + AYLKELRRLRLEEETLLKKQRESSTASEEISN" + gene complement(2796959..2797762) + /locus_tag="Ccel_2373" + CDS complement(2796959..2797762) + /locus_tag="Ccel_2373" + /inference="protein motif:PFAM:PF01791" + /note="PFAM: deoxyribose-phosphate + aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; + KEGG: hya:HY04AAS1_1586 predicted + phospho-2-dehydro-3-deoxyheptonate aldolase" + /codon_start=1 + /transl_table=11 + /product="deoxyribose-phosphate + aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase" + /protein_id="ACL76706.1" + /db_xref="InterPro:IPR002915" + /translation="MDGKALRLARLIKPSCKKTCIVPIDHGVTLGPITGLGDYRKLIG + QIISGGADGIVLHKGILTRLCKDEIFLDGNYILHLSASTKFNNDSHCKVLVGSVEEAV + QLGAEAVSIHVNLGDTDESSMLKDFGKVSESCVRWGMPLLAMVYAKRNQRKPGDIAHT + ARLAEELGADIVKVECPETMEEISELVKNVQIPVLIAGGENMNNPEKLLNMVNNSILA + GAAGVAIGRNIFEYNNPGLLIKLISMIIHEGKGLDECIEILKEDCKYSN" + gene complement(2797815..2798978) + /locus_tag="Ccel_2374" + CDS complement(2797815..2798978) + /locus_tag="Ccel_2374" + /inference="protein motif:PFAM:PF01959" + /note="PFAM: 3-dehydroquinate synthase; + KEGG: hmo:HM1_1788 3-dehydroquinate synthase, putative" + /codon_start=1 + /transl_table=11 + /product="3-dehydroquinate synthase" + /protein_id="ACL76707.1" + /db_xref="InterPro:IPR002812" + /translation="MKAKYDISKTGAKKQHLQGVKIMKKDMIWFDGRNLKNEEAILNM + IYILNFENLLIKRGMLDTITPPHKMNLIIEINSEEDMEDLNKEHIVLSADRQLLQKSV + QKGFKTALLHRIFDRNSMDEAWQAGSNFDYVVAEFSDTTNIPLELLVAKLQSQNTKVL + KIVNSCQDMELAFGVMEVGSDGVVFSNEDHSEIIKVNTFIEKMGTSKIQLAKGRVTEV + LHIGIGYRACIDTTGLLKENEGMLIGSTSEGGLLVSSETHFLPYMELRPFRVNAGAVH + SYVWAPEGETSYITELKGGSKLLCVDTLGNTREVVVGRVKVEKRPLLKIEVEVDGKRI + NTMVQDDWHIRIFGADGEVRNASTIKEGEELLTYVCQGGRHVGLKIDESIQEK" + gene complement(2798962..2799207) + /locus_tag="Ccel_2375" + CDS complement(2798962..2799207) + /locus_tag="Ccel_2375" + /inference="similar to AA sequence:KEGG:KRH_20410" + /note="KEGG: krh:KRH_20410 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76708.1" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /translation="MSEMVETRLKKVIKENYKASDIADNIRVDETLATFGLNSVEFVK + LVVMLENEFGFEFDNEHLDFAKFSTIRDIVDYVESKI" + gene complement(2799275..2804137) + /locus_tag="Ccel_2376" + CDS complement(2799275..2804137) + /locus_tag="Ccel_2376" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bay:RBAM_014370 MlnE" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL76709.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MQTVKTANNIIYKLVADKKLDPQDSVVLLSELQKNKQHIENDEI + AIIGMAGKFPGSENLEEYWENLMDSRLCIGKIPPDRGSFAVEITEGTDSSYSKAGYIK + EIDKFDAAFFRISPKEAKYMDPIQRVFLETAWEAIEDAGYGGDRLYGSNTGVYTGNDH + TWGSPYKYMIQDRDPLAITGSWSGILASRISYILNLNGPALVIDTACSSGLVAVHEAC + NALKTGKCQMAIAGGIHIIYKPIENNEMGIVESNDSTIRAFDDKASGTVWGEGVGVVI + LKPLKKAMEDKDEIYAVIKGSAVNNDGASNGITAPKAEAQEDLLIKAWKEARINPENI + SYIETHGTGTVLGDPIEIKGLSRAFRKFTKKNQFCGIGSVKTNLGHLVGASGIASLIK + TVLAINKKVIPPTLNFEYPNRYIDFSNAPVYVNDKTTFWEADQNIRLCGVSSFGFSGT + NCHVVIQEVKKEIRAETASHRPMVFTLSAKSQFSMKELVQRYLKFINRPEVPSLKDIC + STTAVGRGHYNYRAAIIVRGMDELREKLIQLREVIDIKQTHVQNIYFGEHKIVSSKKG + LNEANDITEHERREISQKADLKLKAFLQGEVHELEELCRLYTIGADVDWNKFYEGTGG + RTVHLPPYPFERNRYWIDNEKGEKTKAVTPEKNKHNLYEIRWVPCTEAPKSSMNLTNK + TVAIFMDAEGIGEGLASNLTDKGIDVIQVMLGESYEKKNELSYTISGCERDYYKLFED + MGDRRISKIIHLFGNRSKQYGDSPEELELSHITGVYSLFYMVKSFAKLKSGQSVEMVL + VSRNTFSVDKQEKKANPGNAALFALGRVISAEYENIRCRGVDIDTDTDANSLVSEVYG + YNTSYLTAIRDGKRYIQEFARLEMGGGSRKGIDIKSQGVYIITGGLGGIGLEIARHLS + QKGAGNIALVNRSSMPERHEWAEILKAGADTKLCQRINAINSIEADGTAVFSYPGDIS + VKDQMMGVINEIRDKFNNINGIIHCAGLAGEGLISGKSQADLSKVLSPKIEGTFMLDN + VTREDEIDFFVTFSSVMSILNVPGQGDYAAANAFMDSFAQWRSTQGKRTVSISWPAWK + DTGMAAEYKADKNKSLFKPISVEQALSDFELILESESTHVIAGELDFEMLSGISEDIQ + LFKLEKDIAAELESTVSSNSLISVKESPLPTVKLKGGVSGNYTKLEKLIGNIWGAILE + IGELSIHDDFYDLGGNSLLSINMASKLKEQLNVEIDINNLFEHFSIVDLAMFISEKYP + ESAREKISVNDGDNVEVRTERAATVNILPQIGKIEIEESIVNQISGLMWRQMNCLDRG + FGLLLGQQNKELLRLFKLFLGIKRCFNLEGYLGDIYSKQTFYNGNLVENQLLESFGLR + ASVKKVRTLEGLHTTICSYIDKGKPILVCFDEYFTFYSSFYLSKHTNHLAVINGYDSS + KRLYSVIDYNHLMQNGEKIIDYGRFYTTFDILEQIYSNTNGMEILVMEKHQDVGIGGI + TNKITGLLEYISQNELQSEDLIFIRNIMTSDDKQLDAEGLNKLYFFLGSKELLISTLK + DFFDKEHKELIGMSNDILETSNALINICAASLIRGRSIKLDNTVVNNINNISKTSDEF + FEALKNISII" + gene complement(2804171..2809012) + /locus_tag="Ccel_2377" + CDS complement(2804171..2809012) + /locus_tag="Ccel_2377" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: ckl:CKL_1731 polyketide synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL76710.1" + /db_xref="InterPro:IPR001664" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MNRVFQYIVENTGNGNISKKAAAQIIRLLKDDEIRSDNDIAIVG + MAAKLPFAPNIDEFWINIRNGRDCVSDFPEERKKDTDALLGHMNLKPSEIEYSIGAFL + DEVDKFDYKFFKLSPKEASLIDPNQRLFLQTAYQAIEDSGYGNGRLSGSKTGVYVGYS + SDFGESYKRFIHTVDPGLSGIAIPGNIKSIIASRISYYLDLKGPSMLVDTACSSSLVA + IHMACRAIRNGECETALAGGVKLNLLPLKINRQDGIGITSSDGKARSFDDSSDGTGIG + EGCAAILLKPLKKAIADRDNVYAVIKGSAINQDGNSIGITAPNSAAQEEVIVKAWKDA + GVNPETISYIEAHGTGTKLGDPLEIDGIESAFKRYTDKKQFCALGTVKTNIGHLDNAS + GMAGVIKMVMALTNKELPPMLHFKRPNRKTNIQESPVYINDRLTQWETDGFPRRCGIS + SFGLSGTNCHMILEEAPSSEKPQYPAEESIIPYRKNVLTISANHVSALQSYIEAYRHM + LDNIKNVTLEDICYTANTGRTHFPVRIAIITTDIKDLKQKLAFLTGSIKYNIDTKCIY + SAKEYATDHPGISTFENLTPEADTLPDLTSASGDIYNKHLDEICKSYISGDHIQWDKV + YDGKGMKKVSLPTYPFERLRCWLTANTPKAAEINAYEQSYNKLGYPLLDSCSTETMEG + AVYSTNFQVNRHWVLNEHKVNGNFIVPGTSYIEMVSEAVGHYKYYENLEFRDIIFEFP + LAVGENEARDVQTVLKIEDGYLGFYVASRPDGDKWVRHVQGKVFLDEDRNSVQYNPDE + MARSAIFEEDIELTGKRKGLIDTGPRWNNLKKVYTLHDGVLAYLVLPDEFTGDLDKCI + IHPALMDSAVNVAIGSIGEGLYLPWSYKSLIIYGKMPDKLYSLIRQKGKADLNMETAS + FDIILMDEKGRVFADIENYTLKKVNQLLTTPDYKSVKVNMFHRMNWIKNYTTKGVESI + HNAYKPAAGKVLLFKDRGSLWMDIKETLGVDVVEVDICGCYEKFATGRYSIGYGEEDY + DRLIKDLREEGISQIIHLSSIGWEKLPEDSDSLAETQKRGLYSLVYLIRSLISNKIRN + EVELIAVSDYVNMVTGMERRINYYNATIPGICTVAGQEYGNLKCRCIDIDETTEVNKL + VSELNSRDSCSLIAYRDGERYHQEMDEVHLEDSEPEEIEICEKGVYIITGGLGGIGRE + FAGYLSAKKPVSLVLIARTYIPDREAWDEILKKNSGTMLAQKIEFIKDIEKSGSQVVY + YSADVSNENDMKNVLSSIRRKYGRINGVIHAAGIAGNGFIIRKDMEIFTRVVKPKVQG + TFILDKLTKEDNLDFFIMFSSINSILGGAGQSDYTAANSFMDSFADYRRKTAGGKTVS + INWTAWKETGMAFDNGIINGKIRGVFLPATTSDAIQMFEEITAKKLTRIIAGQLDFET + IPLLDSGTAIRFSNKIQGKIHKYKVRSNTDSQRNTAREGEITPLKIKGSKDKGISSVQ + AVVARIWAGALGLEEVSVYDNFNDLGGDSVMATLLLKNLEKEFPGIVDISDIFNYPSI + SAMSEYIESRTGKEKIQPDVENQQIMTEDGEAGMEEIMQQLSRGEITIEEVDKLMKTK + GLM" + gene complement(2809055..2820142) + /locus_tag="Ccel_2378" + CDS complement(2809055..2820142) + /locus_tag="Ccel_2378" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: bld:BLi00401 lichenysin synthetase A" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76711.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MINKSMKLKDIKIDKLPDLKNISFEEVSTQDVAIIGISGKFASC + GNMDEFYVSLRNGDNLVGKFPQRRKQDIDTILRYMGISEKETVYYEGAFLNEIDKFDC + SLFNISPKEAGLMDPNQRLFLQTAWNAIEDSGYGGDRLRSSRTGVYVGYCGDFNEDYR + KYVQLMDPSMAALSVTGNIKSIVASRISYLLDLKGPSMLVDTACSSTLVAIHLACQAL + RKGECETAIAGGVKLILLPVDNNPQNGIGIESSSGVTRSFDEYSDGTGFGEGVAAIVL + KPLKKAIEDRDNIYSIIKGSAVNQDGTSMGITVPNAQAQSDVIIRAWKDAKIDPETIS + YIEAHGTGTNLGDPVEIDGIEMAFAQYTNKKQFCAVSSVKTNIGHLDSAAGIAGLLKA + VLSLKHKELFPSLHFDRPNQKINFQNSPVYINDSLEQWENHGGPRRCGISSFGLSGTN + CHLVLEEPPQIKSIPEESPGCNYHIFTLSSQNINGLMEQLKNYEKYLNREREVSLGSL + CSTTNTGRGHYNFRLAFVITSKNELKEKIQKLSTGGLENFEKYGVYFGKHKIVDKEKE + SRGNNEYSQEEIADLSLQTETYLNEAINNESQQKKVSLENICALYVNGANVQWNRLYK + SGSYAKVSLPGYSFMKKRCWIEHENSNSHNSKHPLIDKHILESVDLDVFSTTFKVDRQ + WVLNEHQIGSNYVAPGTTYLEMIREASRKHFGNHPLKMQQVTFIHPLILKADEEKEVH + TIIKRDEDTLEYTIASKQKENGQWLKHSTGAVAGIPKEDASSLSFDFEKIKEACPNVI + DIGNMGSREGILRLGPRWDTLKAMYTGDRMALACFELGEEYSEDLSKYHMYPSLMDCA + VNIANMSVGEGLYLPLSYGSLKIYETLPRSFYSYLVRKDNMSLNNEIAIFDIKLMDEY + GKALAEIEDYSVKKVHNTGLEAEDPDNLFYKTGWEKQEQEFLTGENADFSGVTIIFND + EYGMGEELAQKLRAAGTETVEVEFGIDFRQINHSKYMTGTDEGDFRKLFSELNGRAVN + RIIYLSALNFDTDMDIDGLDEAMERGVYNLHRLTKAISESMQNDLDLVIIADNASEVV + EYQEKINALSGSLYAMGRVIGQEYDNIRCRCIDIDKAVDTDLIISELAQKKFLFNVSY + RNGQRYIQNLQRQSPYSNGGDKIQIREEGVYIVAGGLGGIGLEICRYLAAEKRVNLVM + INRSPLPERSLWDDLLKNTYEGINDTDYNIIDRIQSIKELKDMGSKVLCFSADLADMA + SVRLVLDEVRKHHANINGVINLAGVFEEGILIKKDTEALKRVIAPKVNGTLILDRLTE + NDNLDFFVMFSSIASFIGGHGQGEYSAANAFMDSFAEYKNRTGRKVISINWTGWNQVG + MASQYNLSDGRRIFKLISKEKAIKAFDRALTASLPRVVIGELDYEFMAEYAMDNAYIQ + LSQEIKNSLKPYIKMPQQVKQPGKRKIVLPKGRQNQEYTPMEKGVAAVWGEVLGLEEI + DIYENLYNLGGDSIIALRIANEINKKLNASIRISDLFEYLTVQRLAAFLEDKTPEKEV + SVKDLRESEKEHTYYELSNIQKRIWFLQNYDPQMTVYNLPLVSSINAELNVQVLKEAV + NLLIQRHEVLRTVFGEENGEPYQKILTVYEYEPEVVDLTGEPHKESVLNELIAQENKK + PFNLSNPPMRVVVYKLSSSSYCLYLNIHHIVTDGWSMGIFSYELMKLYEGIVLEKVVE + LEPLNFRYTDWVKQQLEWQDSSEFVEMENYWLQELYKPLPVLNLPVDYKRPQMQTYNG + SFIKFSIDGNTTAKLKEFARQHNITLNMALLSAYFVLLKKITADKDIVVGLPVTGREN + KELENIMGVFINTLSIRINFENISSLNDLITCVREKCLKAYRNIKYPFDLIISKLNPE + RDLSRSPIFSTVFQLYDKIPPETEGSSMFELSMLCREEDNRIEIRAEYNTDLFEKQTI + ERFAVYYTNIINAFLIESDMSIDGIEILSLEETNRIITLFNATEREYDRTASIDTLFE + LQAKALPHSQCIIQGNTIYTYAQINSLANCIARTLLEKGVMKGDIVGIMVERSCNMLV + GILGILKAGAAYLPIDPEYPGERINYMLNDSSVKVLLTSGKLKGTVAFYGISVDMDDD + GLYTGNCENLSINNRPDSLAYVIYTSGSTGKPKGVMIEHQAVCNFIEGMVEKIEFGSG + KSILALTSMSFDIFILETILPLCIGMKVVIASEEQQKDPKLLSEIIKQNSIEMLQMTP + SRLQLLLSDSRGRSSLSVPQVLMVGGEAFPQALLDEVKRCTNARIYNMYGPTETTIWS + TIRELTDRSTIDIGKPIANTQVYIVSESGNLQPIGIPGELCISGDGLSRGYINRPELT + LEKFLENPYMPGKKMYRTGDFVKWLPDGNIEYIRRIDHQVKLRGYRIELGEIEELLLK + YSGVREAVVDVKGEDSESRKLGAYVTADRDLTEVELKKYLENELPQYMIPTYIMVLEE + LPLTPNGKTDRKALPCPVLTGLNTNGFVDAVNETEKALQRIYQDVLNIQRAGVNDNFF + ALGGHSLKATILVSRIYKELGTEIPLSAVFKTPTIKELACSINGTDISEYQPIIPVEK + SSSYSLSPAQRRIYLMEAVTGESTAYNIPVLMDLEGEFDRERFEQAIKNLVARHEILR + TYFDAVDGVPVQIVQECMEPEIAYIEIKEDDSDGNIQNLIKPFNLKSGPLFRVKVLLT + DNGRKTIMFDIHHIICDGISLGILTREFIELYRGKELKELTVQYRDYVSWKSSLYGSE + RYKQQENYWMGMFSGDIPVLNMPADYTRPTVQSYEGDTVYFELNKEMSKKLHEVETSE + KTTASMTLLAVFNVLLYKYTGQEDIIVGMPVAGRGNADLENMLGVFINTLAMRNRPEG + TKTFHNFLQEVRHNALNAYENQDYQFEELVDKLNVPRDLSRSPLFDVMFIMQNTSFPE + IEEEGLRFKSREFDSKSSKFDLTLESVEKENTLHFRLEYCTKIFMRETVERMSLHFLN + ILEQVLNNPDITLSDIDIITKEEKEKIEGVFNATDVDFGDRGKLTVHELFERQAEFRP + DSIAVMCEGTGITYNELNEKANKLARLLQNEGIKREESVGIMVHKSIEMIIGMLGILK + AGGAYVPVDPDYPADRIHYMLKHSQTRFLIIDQSSFEKTEMINTEENSLEVVINLSEG + AGKTAGLIKYTAEDIKNLSPYNLKNKANPKNLMYIIYTSGSTGLPKGVGVSHANAVNY + LNWSIENMSLSHKDVMALVTSMSFDISVFEIFGSLLSGTCLCIVPDSRMKDGSLFMEY + IDAGKVTIWHSVPALMIQLLTAVKSRKTLGNQELFSRIRCIMIGGEAWTYELAKDIRE + YFHHARIVNMYGPTEATIWVTSHDVRDNPGSSTVIPIGKPISNNKVLILDSCKKMCPI + GIPGDIYISGLNVTRGYYKDEEKTREVFTLYGEKGSIIYRTGDVGRYLSDGTIEYLGR + KDGMIKVRGYRIEIGEIENVLLQNEEIIQAAVVAKKSGETSKLICYYTAPREHTYEEL + RGCLEKKLPDYMIPAQFIWLEKMILTPNGKIDRKSLAALDIGEPFQSNENYAVPESEV + ERFLAGIWSQLLDMKKVGTKDNFFSLGGNSLLVNQMHSMIDEKYPGKIKVIDIFKYPT + ISKLADFMEGSEQKKYENVTVPTSDDGDDDIIKLLDGFESGDILIDEVLSKLDDI" + gene complement(2820152..2822023) + /locus_tag="Ccel_2379" + CDS complement(2820152..2822023) + /locus_tag="Ccel_2379" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: sus:Acid_0877 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76712.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKKIALVVMPWNDIRTGSLALSILKSAIQGAGFGCDVFYLNLKL + AKDMDLSTYNYLNNTYYIGEWIFSQYLFGKYGTGELKNDFSDFSKFLILESGYTEAGA + TMRKRKTELDEILNIIPQYIEECINDIPWNDYYIVGFTCRMFGQISSLLLSKKIKEIN + PEIKIIFGGANVRDIQGKQMIQDFDWIDYIIDGEGEEVFPKLALNIDKGKCYEKLPGV + SYRRGNEVFLSDDLPTSIAMDDIPTPDFTDYYSQIEEYGLNGKFENIVLFETSRGCWW + GNKNPCTFCSSTLGRYEFKSKSPDKIINELKYLSHKYNSNSFFFTDSILDVNYYKTLF + PKILEMEQSFNMFFEVKANTSKNQLELLRQIGVYSVQPGIENLSTELLKLMNKGVTSL + QNIQLLKFCAELGIDVRWNILYKIPGEKGSSYNQMLELIPLITHLQPPPGLTTVDLER + HSPYFCNPEKYGISEVRPSSFYKYIYPADRINLENIVFTFDYKCDSFSEWDEEYHTSL + IRLVNFWKGINTDNRIICKYNTCNEGIEIVDSRPLDFNESDNVERRYIYTDLNSEVYI + LCDSICSFEQILERFSSRLNETGLREILNEFVSKKLMVCEEGRFLSLAINNDSKNNT" + gene complement(2822047..2823318) + /locus_tag="Ccel_2380" + CDS complement(2822047..2823318) + /locus_tag="Ccel_2380" + /inference="protein motif:TFAM:TIGR00128" + /note="TIGRFAM: malonyl CoA-acyl carrier protein + transacylase; + PFAM: Acyl transferase; + KEGG: ckl:CKL_1732 PKS acyltransferase domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="malonyl CoA-acyl carrier protein transacylase" + /protein_id="ACL76713.1" + /db_xref="InterPro:IPR004410" + /db_xref="InterPro:IPR014043" + /translation="MKNITLLFPGQGSQYEGMGKKLYDNYSVAKHVFDEANDALGFDL + KELCFSGSLDELTKTENAQPAILTCSIAAYEVYMKEFGILPTYYAGHSLGELSALACA + GIFSFADSVKIVRQRGRLMQEAAASGVGAMAAVSGIDKNILQAKCEEYSNDNNIVVIS + NYNSPSQIVISGHKSAVEKISLELQGINAMVVPLKVSAPFHSPLMETIKGKFREVLES + YPCGDFKGTVISNVTGLPHKSKDILVDLLTEQLVQPVQWESTMKFLYENGVRTVMEIG + PKTVLANLAIKNIPDIKAFSYDKPEDIEKFRKIITNNTSNRSENLPQPTVVTRCLAIA + VCTKNKNWNNEEYQKGVIEPYRRIQRLQEELDKTGDKPSLEQMKEALEMLKSVFETKK + TPVQEQVERYNQVFDETGTRHLFADFIMPNQ" + gene complement(2823319..2835909) + /locus_tag="Ccel_2381" + CDS complement(2823319..2835909) + /locus_tag="Ccel_2381" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; Alcohol + acetyltransferase; + KEGG: mar:MAE_60010 McnC protein" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76714.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR010828" + /translation="MKTYDNILLSSKKYREQRDFWCKQLSDIELTRMIELDFNASTER + ELNKKLYFTVQSDITDRIIKIGKGSEMSIFIILLTAFEVFLYKYSGKNSLHVLSPVYK + GSSKDLFFNDEIIIHNLVNRNQSYKELLKKTKEDVVAAYENQEYPLEKILSELGIEKN + VYDILFLSQNLHNKTVRDKKHNLIISYRHSEIGIDFTLEYSDTIYNECTVKRIYNYFM + TTLEECLKNPDQRIGLFSILNKEEKDTLLNAFNNTDYKFENKKTIIDMFEEQAAIRPE + DTAVVCSEKSLTYKQLNVQANKAAQMLIEKGLKKGDIVGLISGRSADTIIGIMGILKA + GCAYLPIDPSYPVKRIEYMLTDSDAKAVLVQNTHSHELEYNGIIIDLNSKAFNNSSCD + NPLISRGADDLAYVIYTSGSTGEPKGVMITLENVVNLVNGLELNIYRKYIGRLKVAIV + APFVFDASVQQIFTSLLFGHSLYIVPDDVRSDGKKLEGFYIENKIDISDGTPNHLAGL + ALNASSDIKNMKVKHFIIGGEALHYTTVEKFYSRFEGNTPEITNVYGPTECCVDSTFY + TLNPSDLAGSKIIPIGKPMPNVQVYILGENQELIPRGCIGEVYISGTGVGVGYLSREQ + MTSERFIPNPFNVDKKMYKTGDLGRWLPDGNIEFIGRKDGQVKIRGYRIELGEIEAQL + QKHENIREAVVTDRKEDSENKVLCAYFTANEKLGVTQLREHLSDKIPEYMIPTYFVQI + EKMPLTINGKLDKNALPNPKDTLKKRTEYIEPRNNTEQSLVPIWQDVFQIEKLGIKDD + FYELGGHSLKAITLSSRIFKDLNVEVPISILLSTPNIEGIAKYIDSKSKALYINLKPV + EERDYYCLSSAQKRFFILNQFDEVNTSYNMPAAFIIEGDLDISHMEKIFSELINRHDA + FRTVFEFNGQVPVQRITASAEFKIEQIQPDYNLLKAIGSFIKPFDLAKAPLFRVGLIR + LADSKHLMLIDMHHIIADGLSINIIIKEFLQLYEGKELPELKFQYKDFSEWQNKLFES + GEILKQEKYWINKFSGEIPVLNLPTDFPRPSVKSYEGDKVEFNIDNNIKRKLELMAEG + TKATFFMVLLTAYNVLLSKYSGQEDIIIGTPVSGRTYSDLENIVGVFVNTLAIRNTID + SESTFREFLERVKESCLEAYDNQDYQFEELVDNLNLHRDTSRNPVFDTMFSFNNDIEE + IELENLKLFPYDISNGQTKFDLSLNAFDDGQVIHFSLEYCTKLFKRETAEKITRHFTK + ILDQVVLNPEIRLSDIDILTTEEKRHLLFDLNSTKREYPFYSGIHQLFEEQVQKTPHN + IALIFEGKQLTYHELNEKSNRIAWYLIEKGVREDSVVGIMVERSMELVIGIMAILKAG + GAYLPIDPDYPKERIDFLINNSNTSMLLTGKKISEDMYLENTETIAVREVLDNNNLPV + TNLNLEYNPERLMYVIYTSGSTGNPKGVMVKSHSFVNLLNWFVREFDIGEKDCNLIIA + PASFDLAQKNFFSTLVTGGCLCIFSPGLYDYERMSEVINKEHVTMINCTPSAFYPLID + FNADSGFLRLQSLSRVFLGGEPINMGKLLPWRKSMAYSADIVNTYGPTECTDIASFYR + IDNNIIEQETAVPIGKPIDNVQIYILDKNQKLVPQGMVGELCIGGIGLTRGYYNDPGL + TKERFIECEGISGRKVYRTGDLAKWTQEGNIEFLGRVDNQVKIRGYRIEMGEIEASIL + SHPAIREAVAIAKEDSTGGKYICAYIVSDTGLSITELRDYLQKSLPGYMIPSRFVQIE + KMPLTPNGKINRKALPEPDRISLTETERQKPQNELEERLADIFKEILNTDILGVTENF + FDLGGNSLSAMILSLRINKEFNTEVSLTNIFTMSTIRQLANYINQKENKAVYDVIEVQ + PEREYYPMSQAQRRMFILNQIEDTQTSYNIYGAVLIEGNLDIGKLESAAKELLQRHEI + LRTSFEVVNGEPCQLVHKDVEFGLEIIKNNDVESEDLDNKITGFIRPFDLSKALLIRI + GLIPLEEKRHVVIMDMHHIISDGTSVNILLKDLFALYKGKDLPPVKIQYKDFSVWQNK + LLKSEIMKGQESYWLETFKGEIPVLNLPIDYPRPPIMDFKGEVYEFEIDEFTTSKIRN + LASESNTTMFMILLSSYNVLLSKLTGQDDIIVGVPSAGRKHADIQNTVGMFINTIALR + SNPGKNRTFMDFLQEVRKNSLEAFEYQDFQFELLLDMLGIKRDLSRNPLFDTVLNFYN + MNDSDNNYMSDETDFNLYPYEVKNNVAKFDIVLYASETDERLKFYCNYRTSLFKSSTI + EYIMGEYVKLLGIIADEPEKLIRDYYIFSRESIVNKRNPIVLKNNGPEKSGTIKEHKT + LVESIEKQVEEHRESTAVKTHDRLVTYGELNDSANNIANIILKKSKSNDRVTLLFEHG + ADMIIGILGVLKTGRSYVPLDPAYPEERLVDIFKDSGAEILVTNDKNLKYAEELVHIL + NRKVYLINIDKVDLISPANNPKIAIEPEQTAYILYTSGTTGKPKGVMQSHKNIMELVG + NYAEELLISHADRLGLTTSYSHTVAAIDIFSALLNGAGIYPYDLKNKGSIENMSNWIE + ENSISILHTVPSIYRYFIKSIDKTKRISDTRLIILGGEVVYSSDIEEYKLLFSDDCIF + VNLFGASEILVATFYLVDKNTQVNTRTVPIGYELEGVSIQLLNDDNKAAGIYECGELV + YHSHYLSQGYWNLDEKTNHQFERNPETGEVIAYKSGDLARLLPSGTIEHLGRKDTQVK + IRGMRIELTEIESVVGGLKGIRECAAIVLEKPNQENTIVVFYVPENEEVIENKQFKLM + LKSKLPEYMIPSLLYPVESIPHTPNGKVDRKALSIKNVDVKEEAAYEPPTNQVEERMT + EIWSEILEIGKIGVNENFFELGGHSLKATSLVSRIHKAFQVEVKLGEVFSYPTIRELA + KLITDSVKENYKPIKPVGKKENYPASSAQKRLFILNQIEDAKTTYNIPGAAIINGVLD + REKVERAFNKLVQRHESLRTAFSIVNGELVQIVKDKIDLKVTFLEVEKVPGTKESTDE + IIEIFKEFVKPFDLSKAPLLRVALIKIDLDKHILLYDIHHIISDATSIGILVNEFIDA + YCGKELRELKVQYKEFSTWQNELLKTDIIKKQEEFWLDYFKGELPLLNLPTDYTRPST + QSFEGDTLSFELDGELLQLLKKTANKTGTTLFMLLLSAYNILLSKYSGQSDIIVGSPI + AGRVQTELENVVGMFANTIAMRNNVDGNKTLGMFLSDVKENTIQVYENQLYQFDVLIN + KLNLNRDLSRNPLFDTMFTMQNMNISERVVDGLSIMPYGMDNRTSKFDITVEVKEDDG + KLIFIMEYCTRLFRKETIVRMAEHLKNIIKALTLNLDTPITEVSLLSDTEKRQILYEF + NNTKADYPKNKTIHELFEEQVIQNPDFIAAICNSEEITYMDLNTRANRIAEVLRDRGV + QRDSLVAILVSRSLEMLAAILGVLKSGAAYLPLDPEYPEERLRFILEDSNAHILLANS + NLNSGISFHGEVIDLAHGSINQKSGENLPNINNPKDLAYVLYTSGSTGKPKGVMISHD + AVCNFMTGVTDKIRIEKGSSILALTTISFDIFVLETLLPLCHGLKVVIADEDHQKDPR + MLRGLITGKNIDMLQMTPSTLQILMNELKNLSCFNSVKQVMIGGEAFPETLLRELRKV + YKGKIYNMYGPTETTVWSAIKDLTKNSCVSIGGPIANTQILIMNGDNLQPIGVAGEVC + IGGDSLARGYLNRSELTKEKFVSSELVPGKRLYKTGDLAKWMPDGSIAFMGRIDNQVK + IRGYRIELDEIEKCILKYNLINECVVIAQEDEFSNKQLICYYVSSEEITVSEIMQHIG + RDLPDYMIPGIYVRLASIPLTPNGKVDRRALPAAGTARPNIDSEYKEANSEIEKKIAE + IWKSILKCDQIGINDSFFQLGGNSILLVRMHEELEKHYPGKINVSKLFIHNTIAKLSE + FISQDDKKAVNKLELEATRLPQDYFTGSMHEQYENKAFKYSFTSDLSNKITNFSLDSG + QGLKEILLALYFYLLYQVSEEERIVVHTITDNENRILPLGMNIGEVDELDSLFTLVSD + LCEDTQNSYDTDMLKTVAPNKEKDTATMLFSSENSRGMADCRIYDIIINPEIDKNVIS + LTTEYNAARIEKHKIEELIGKYINLINIVFERMI" + gene complement(2835946..2837052) + /locus_tag="Ccel_2382" + CDS complement(2835946..2837052) + /locus_tag="Ccel_2382" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbh:CLC_2462 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76715.1" + /translation="MRECKNCVLPETYSGIEFDEKGVCNYCNDFMEKKNSSQEKLYFK + NEDELAERLKEYKGLRGKYDVLVPLSGGVDSSVALINIVEKFKLRPLVFHNDHGYEDE + TATDNVRKLCRELNVDMILWQNDFTFMKKLWKYFNECNIQGLNACYVCGNILYLNALE + LASNFDIPLIINGYSKGQAALIGDQEKGSKQLEKMIEVIRNTGDVEFFEEFARKYEFL + GRQKIFKDPNDLIAGINAEKILIIPFYIFKFYKTDKEVLKKICMDRFDWKPLKTTYPA + RTTNCEMIWLNTYMDIRKMNYSAYTDEYSILIREGEISREQAAEDLEFNPPEGLLDRL + ARDIGIDLNNIESKSGINEDEEKNINDFDIDFNF" + gene complement(2837085..2843105) + /locus_tag="Ccel_2383" + CDS complement(2837085..2843105) + /locus_tag="Ccel_2383" + /inference="protein motif:PFAM:PF00668" + /note="PFAM: condensation domain protein; short-chain + dehydrogenase/reductase SDR; phosphopantetheine-binding; + KR domain protein; Beta-ketoacyl synthase; + KEGG: ckl:CKL_1731 polyketide synthase" + /codon_start=1 + /transl_table=11 + /product="condensation domain protein" + /protein_id="ACL76716.1" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MVNKLLNLNKNELFSLAENRILKENISKKDIAIIGMSGRFGAAE + NLSQYWEYIKDGKDLITDLSGTRQSDCMHFASKFSNKKGNTEYLKGAFFKELDKFDND + FFNISPREASLMDPNQRLFLENVWEAIEDAGYCGKRIMGSKTGVYIGYSGSKPTYETL + LWESEASLAPESLAGNVNSMLASRIAYILDLKGPCMLVDTACSSSLMAVHLACQAIRN + GECHIAVAGGIKTLLLPLKTDDSENVGIASSDGKARTFDDNSDGTGIGEGVAAVLLKP + LEQALNDKDHIYAVIKGSAANNDGSSIGITAPNSLAQRDAIVKAWEDSGINPETLSYI + EAHGTGTKLGDPIEIDGIKRAFKKYTDKKQFCAIGSVKSNIGHLDNVAGIAGLIKAVL + CIQYGQIPPTLHFKRPNRKIMFEDSPVYVNDRLHEWETMGYPRRCGISSFGISGTNCH + MILEEAPNSKGKSENPQSKLQVLTLSAKNEKSLYSLLKSFDEYLKKNKEVSIEDICFT + QNTGRMHHSLRIALILENRHDMEEKISKLADLQPKGIREQGVYYGYHKVVRNSEGIKN + DGYISETDKRELSKTASERLKELVTSGNYNRGTLEEICILYTTGGDIDWDFLYKSENK + VSLPTYPFNRKRFWIDTKRQMKESVQESHGERYKLPGYRISDTINQEVYTAEISVENQ + WLLREHKVGGNYMLVGTAYLELAMQTSKKYYPGKAVEIRELTLLTPLIVGEEDKVELH + TVIMKEYGFLKFVIASKSKTAENGWIEHAQGRIYGTEKLSDKYDMTEALQRCTNEWDI + ENKQKNAVVEVGKRWQCLTKAFSGTNEALGYLELGEEYKGDFDEFQLHPPMLDTALNF + AGDQAEKAGFYFPFHFNSVKIHNPISSKIISHVRILNNSDRTIEYNITLVDENRRVLM + EVDRYVTKKDAGQLLNKTDLLHSIEWVEYSDTAQDKAFDLLDGNKSTLFFSDKSRSCN + EIINRLEAKGIKVIEVNTGEEYGVLGKDKYSVGYSQEDFYQLFSQESIKDINYIVYSP + DSGLPDTSDIKILENKLENSVYNLFRLTKAWMQKNTGKDIKIVILSTYVNSVTGNEEC + LNPENAALFGMAFVLKKEYPNLKIKCIDMDEGCEAESIISEFQTVHKTRMIAFRNGRR + YIEQLKRVKREQNPSNSVKIRENGVYIITGGLGGIGLEIAKHMASGTNLNVIMINRSE + MPERSQWDTILETEKDLKLCNKIKSIMDIESLGSKVTYYNGDVSDMQSMKLIIEDVIK + NYGKINGIIHSAGIAGNGLAITKDEKRIKEVMAAKVKGTWIIDSLTSNLNMDFLLLFS + SAETLTTSAGQSDYTAANYYMDTYCYYRNKRNQPTFCINWAAWKETGMAKEHNADRDG + VFMVLSTANGVRVFDEVLKSGQPRVIAGQLNYNLLAGLKESLPVTLEPELSAVLDRSK + KTRKSDIIAGTTKQDTVDIKLTGKTDDQITKTEQAIGYIWASIFQSNEINVYDSFYDQ + GGDSIFAMKITNVIRNTWGINISITDVMNNQSIYELGKYIDSEFAETKQASLKSLPIG + KAEKSDYYPVSSSQKRLYILEQYGNIGTTYNIPVALMVEGRLNIQRVENSIGRIIQRH + ESLRTTFKEVNGSISQIVHKDYKPDFRYFEADEKKTETIIRDFVKPFNLNKGPLVKTL + LVKFSSDRYLLLMDFHHIVTDWASSDIIIKEFIDIYKDNELPEPGTQYKDYSVWQNQL + FSSKEFLEQENYWLNIFSGDIPVLHLPVDKKEHDESVPDYTGKSISFKLGADLTERLD + KFSQKQGVTLFMLLLASYNILLSKYTGQEDIVIGSPISGRIHTDVENTVGMFVNMLPM + RNFPSGNKTFAGFLEEVRDNCFGAFENQDYPFEMMISRLEAQKNTKINSLFSITFALM + TRREERIDVDDFKMMPVNIPVTTSKFDLTIDAVKVDGDIAIDFRYRTALFRSDSMDNF + IKYYKELLEIVIEEPEIKIEDIDFLEEREDGTSLNQKASIMDEIDFEF" + gene complement(2843121..2850647) + /locus_tag="Ccel_2384" + CDS complement(2843121..2850647) + /locus_tag="Ccel_2384" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: ckl:CKL_1733 hybrid nonribosomal peptide + synthetase/polyketide synthase" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76717.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010071" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MDKIAQIIFENSVAGKIDKQVGAELLKLLKTNKKQNDGIAIIGM + SVKFPGAETAGEYWSNIINSTDSIRKMSEERKRDIEDFMLHFTSSVNPDFVYPEGGYL + SDIDKFDYSFFHISPNEARYMSPEQRLFLETAWSAIEDAGYGGNILSGSKTGIFVGHG + DAPWYGQYVLKTDPVLQSLAFAGNISSIIASRLAYLMDLKGPSMLIDTACSSSLVAVH + NACKSIQNGECDYAIAGGVTLNIIPVKGVLDVGIEAGDFRTRSFDNNSTGTSWGEGVA + AILLKPLERALADNDNIYAVIKGSAINQDGSSAGLTAPNMLSQADVIVKAWKEAGINP + ETISYIEAHGSGTKLGDTIEIEAIKRAFSRYTSKRQFCALGSVKTNIGHLGGTSGIAG + LIKAVLALKNCELPPMINLSFPNREIDFVDSPVYLNNRLEDWTTEGVARRCGVSSFGL + SGTNCHVVLEEAVRKDTETSANPGPFIFTLSAKSENSLKQLVKQYKDYVSRESIPNLG + DICFTASNGRAHYNYRIAFLAEDSEDFIKKINGLDIHDFRMNLDGEAVCCHYAKFKDE + GNEVSYILDGENGKSLKTHIFEKAKAILNKYMENKSREQLEELCKLYVIGASIDWSRL + YSSGKYFRKRLPVYQFERERCWVESKKSIRNTSSGDVGFNHLYFGTEWVPSGTIPGNW + GSQDGYTLILKNQSEFSDDLIEKLKDKYKYVIEIVSGSNYERLSDTSYIINGSRADYD + KLFHDLKDIHISKIIHMLSLERNRSVDSIYELEEAVENGVMSLFHLCRSLIDNDIKNE + IDVVLISDYITRVTGEEEYINPENASLFGLGKIMDQEYGHLKCRAIDIDENTKIETLL + NEISCGYQSYHVAYRNGERYIEKFKKIKLSEYGKEDIKLVENGAYVITGGTGGIGLEI + AKYLSALKKINIVLIGVSKLPERHLWPDIIERGQEKKLCTKLEGIIQIEKLGASVDYY + SADVSDEFEMRTVISRIRGEYGRINGVVHSAGIAGDGFIIRKDEKAFRKVLAPKIKGT + WLLDRLTIEDKPDFFIMFSSAVSIFGAPGEGDYTAANSYLDSYTWHRSGRGKTLTINW + TGWKDVGMIVNLEIDTEGSKVLPTRLAVNAFGLVINRKMSRVMIGEIDYDNEIHSKFG + ANAIMLSDEILQENKAKNAQSGFDTVVAENEIKLSGRQNENYSETEKRVANIWGSILG + YDRIRTSDNFFELGGDSIIAMKAVNSINKLMGLKIVVSDLLRNPGFTEFVKFLEESSE + AETDALNNTVSIRPAEEKEYYPVSSAQKRLFILDKLDNSGLSYNIPAIMSVKGDISCV + KLKEVFSEIINRHEILRTSFESIKGMAVQRVLKDIKFTIDYEEASDEQVESLIKDFIR + PFNLKEAPLLRIKLVKLAQENHILMFDIHHIISDGISMGIIVKEFVDLYKGKKLDKII + LSYKDFAQWQNDMLDSEHIKKQKEYWLGAFAGEIPVLGMPTDYPRLHSRTFDGNRIGF + ELDCDIISGLRELSARTNTTLFMILLAAYNILLLKYTGQEDIIVGSPVAGRELPEVES + MIGMFVNTVALRNCPKYEMKFTDFLEKVRINVLDAFKNQDYQFDDLVNDLGIKRDASR + NPLFDTMFIVQNMGLPDIAIDNLKFNYYHFKYNMSKFDFSLEIGDGGETIPCYLEYST + KLFKQETAQRMITHYMNILRQIIKDASKTIADIGILTDSEKHRILYEFNYTETALRGD + KTLVELFIEQVRRTPDNIAIVHEQTELSYCELNAKANRIAGFLQSRGVKPGSVVGIMV + NRSIDMVAGVIGILKAGAAYLPIDPEYPSHRIQYMLNNSNTDLLLTSYELAERIDSGY + NTICIKNEEIECFDCIEPNIKPSPDNLAYIIYTSGSTGNSKGVMIEHKSIVNTLEWRR + KYYGFNPNDAVLQIPSFSFDSSVEDIFTALISGARLVLINQEDRFDLPQLREIFIKQK + ITNLLVVPSFYRVLLDEISDSMKNVRIITIAGESFTSTLVSKHFEKLGNVRLVNEYGP + TENSVCTSFYEFDKDRTEVLIGKPINNTKCYILDRNDKLQPIGVPGELCVSGHGLAKG + YFNADKLTAEKFIDNPFIPGETMYRTGDMARWLPDGNIEFIGRIDQQVKIRGYRIEIG + EIEHHLQMHTNVIEAVVTVNDLDGQKTLCAYTVLNANIKNKELEEYLSVRLPNYMVPQ + HFIKLDSFPKTPNGKIARKMLPEPDVETVLNDLCEAPTNYIEEELIKVWEEVLGKEVA + GTNQNFFDLGGNSIRLMEMYSRIEEIYPDKLTVSDIFAFPTIAKLAKLISSEKDAPEF + ANAVEASGIILPEEYFIKENEDFEEKIYKYVLSRETYSALKAISGKNDLKSSDIVMGA + FIYLLCEIIGDNQLTLHAKGEWGNAICLITTDLSQADSLVKFVELIGQQRIYPQKKNI + CSLERINIAGKQHNTVLPLFSINCDLPNEMNRPYDIHVKMTEEADSIKLIYTYDYSRL + SMGSMEKLFSAHTVVLEKILEELNVNEY" + gene complement(2850640..2854536) + /locus_tag="Ccel_2385" + CDS complement(2850640..2854536) + /locus_tag="Ccel_2385" + /inference="protein motif:PFAM:PF00109" + /note="PFAM: short-chain dehydrogenase/reductase SDR; + phosphopantetheine-binding; KR domain protein; + Beta-ketoacyl synthase; + KEGG: ckl:CKL_2355 hybrid nonribosomal peptide + synthetase/polyketide synthase" + /codon_start=1 + /transl_table=11 + /product="Beta-ketoacyl synthase" + /protein_id="ACL76718.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006118" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR013968" + /db_xref="InterPro:IPR014030" + /db_xref="InterPro:IPR014031" + /translation="MLDFSEIKLGSKKMNNTIEEISCKDIAVIGIAVKLSKAETVDEL + WQNLKAGVDCVGEIPEERKKDITAYLDFISTGESQKTIGQAAFIKEVDKFDYGFFKLS + PKEAGLMDPNQRLFLEVAWKAIQDAGYGGNKIKDTNTGIFLGCGADCDYKEMISKVEP + QSISVAAVGNLRPVIAGRISYILNLKGPTMLIDTTCSSSLVAVHLACRSLINRECDMA + IAGGIQLHILPVKQTDIGTSSSDGRTKTFDFDSDGTGTGEGVLAVILKPLSKAILDMD + NIYAVIKGSAINSDGSSLGLTAPSASAQESVIIKAWEDAGINPETISYIEAHGTGTRL + GDPIEIEGIKKAFGRFTNRTGFCAVGSAKSNYGHLDSAAGILGFVKAVLSLKHKTIPK + NLHFNKPNAEIDFIDSPVYVADKTAEWERSGDKRRCGVSSFGISGTNSHIVLEEAPEL + REHKVFQDSETGVFTVSARSQTALKTLVAQYIGYLEACKAEDFHSICYTANTGREHYN + YRLSVLADSLDELLLRLNFFLNSGAYSFENAYIYYGAYFMIDKDRPRTGVFDFTDKEI + KEITNSAKTKMEEFLLNKNRQELLHELMELYTKGAEIEWERLYTGEGRRKISLPAYPF + EKNRCWINIPHSAQSMVQSQDILYENVWIHDETCLETTDLLERGTVLVFGERCQLYNS + IVKGLQESGDQLIQVFKGTEFKDLGKNSYECVNTRGGYEKLLEVLSCENITRVLYLTP + REKEIEINSPEQFESNLDDGLYAFFRFTAAFARKFAGQRVEFVLVSRPVNEIIGHEDI + YPDDSAITGVGMVLPFEYPGFSSRCIELDKETPYANIIKEIRSQKKYFKVAYRKGKRY + VEQLQSIQKDMVQKSNIYFKENGTYVITGGLGDIGTKLAVHVAKRHNANIILIGRTKL + PEREYWKDIVSNGRDTVLSGKLEAMEKLEKFSCKVAYYTADISLERELSEVLEAIRNK + HGKINGIIHCAGVGANMTGRIIGEETEETFREVLKPKLRGTWLLDKLTRKDNLDFFIM + FSSAITLIGGRGSSHYTAANCYLDAYSFKRKTSVTKYMALDWAPWYRSDSIGDKKTFE + EKHIFKVLPQAAALKAFDETICLNLPKVIAGELNMDAALFKLEDFLPFNFSSELKEKI + DAHQKKTILPEKSHKQELTLTGKSSGEYSEAERKIAGIWGSVLGYKQLSIYNNFFEMG + GDSILAASIHERLKKEFSQNISIADIFAYPTIAKMAEYISGFESKKPSKSTQLDLNKE + NNINENIFDLFDMVSKGEMSIDNALDRLSSMEDQNG" + gene complement(2854554..2860235) + /locus_tag="Ccel_2386" + CDS complement(2854554..2860235) + /locus_tag="Ccel_2386" + /inference="protein motif:TFAM:TIGR01733" + /note="KEGG: ckl:CKL_1733 hybrid nonribosomal peptide + synthetase/polyketide synthase; + TIGRFAM: amino acid adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; cobalamin B12-binding domain protein; + phosphopantetheine-binding; + SMART: Elongator protein 3/MiaB/NifB" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76719.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006158" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR010071" + /translation="MIQSTKISRENVENMLSLSHMQFGMLFDYINNPESGLYIEQLCL + KLSGCLDPDIFRKAWKHVAETNTALRTVFRWKGIEKPVQIVQREFEIPIEFYDFMDKK + DDNLSDSRECFLKSDWETGVDLEINPFRVSLLRINENEQEMVLTYHHILFDGWSNGIL + IKEFLNAYNAFSEGREIQRTVKGKYEDFIRWCLEQPKDRQKEYWFEYLKGFDKKTSLP + YCSIGTDAFKAGKHVSIFPAELADSVVTFSTHNEITIATLMYCTWGILLQKYSDVDDV + LFGTTISGRQSSIKNVENIVGLFINTIPLRINSNGDTKIFDLLKAVDKAVRDREEFGS + TALVDIKSYSEVDKSSTLFDSIVIVENYPIDRMLTEKGPGLSIISYSIKEMTDFDLTV + EVSMLTQNIRLALTYNSNAFEESSITNISRVFVDILKDIVENPFREFSEISIVKDSET + KCILNEFNDTATPYEKGKTLFELFEEQVERTPDSIAVCFDMALGDVYNKVLAGKISPS + LIKVLEDCVYSKNEYIHLFDSQNLFSNRNIVEKSEDLRMVKTNKGNIVVISTPVLSAL + KLFDGTSTLKQIYESLAMNEKNYIILRSKSDIIKDYFKWNKKIFNISKSFMDFIKLLI + ELDICNLLHIVGTDKLLTCSDSCCIEEYEAGNRENREIQTDIKAIAGQADPGDSIAPV + LLLGDTTGTASTGILYLASYLRRNGIEAYCQWNDTTGTNEELKENIGELLRTIKPKLV + GISMKWFPHIARSLEICKIVKEYDPGISVVIGGNTASYYWRELTGNKHVDYIILGDGE + LPLLKICQKAEYIPNCAYKINGKIVINEISYIQNEENSHDIYLSHMDKIFVRKEDPLY + SQYFYIFTGKGCYANCFYCGGCRTAQKRTFGRVKPFLRRPEEVRKDISAVMGYTSTFM + FDFEVAGSDTLEYYKSIWEGIDLKKHFCSFYFWTLPDKKVIRLISQTFKYVNLNIDLC + SLSERHRNQLNEQGMVKPQPENEQILKFFNNCSEFDNIEVKINLIAGLPFFTVEDASE + SIHMLESILERYPFFKGLDWGKLHAQPGADLAESAVNYGLKSSARCFDDYLTYSKKNM + KLKQYPDLSSINYPFIDFMDEKLNLEISKHYFDVNDRLKSYEERKHNKFITARFTYRE + LNEKANQLARHLRNAGVKRETIVGIMANSSIEMVIGIIGILKSGGAYLPIDAGYPDER + LRNILEDSGADILLCQSHLISKIRTDVTTIDIDDCGLYKGDSNNLDKLNSENDLAYII + YTSGSMGKPKGVMVEHKSITNTIQWRKAEYSMNEEDAVLQLFSHCFDGFLTSFFTPIV + SGAMVVLPDDIEVINLMRIKEHIVGKKITHFICVPTLYTAIQDYLSGNDMESLKVVTL + AGEKVPAKLATKSLQKREDLELVNEYGPTENSVASTVFRNLQKAENILIGRPIANTRV + YILNKYNQPMPIGVTGEICLSGDGVARGYLNRPELTQQKFVPDPFEQGKVMYKTGDSG + KWLPDGNIEYIGRIDHQVKIRGFRIELGEIEARLIKHSSIKQAAVIDKENGDGSKYLC + AYIAAEKELQISTLRSFLQEELPDYMVPTQFIFVDKLPFTQNGKLDRKALQEISGADR + NAALYQPPDNSVETLVADIWKQVLDKDYFGRNDNFFDLGGNSILLMQVHAKLEKIYPG + KVKITDLFDNSTVSKLAVLLTKDENHTDEKLTVGSINLPQDFRSNKNSSIPNSVFRIR + FDDETANKLNAISHREKVDVYTIFIAAYVYLLSQAAGTEQVSVQVMCSPNRIVDMEID + ISQVKNFSELYLLVCDRFKENNSDSYDVSDIDKFEIKNTDYSVCPLIYNKSLMTTDTG + LFKKYDIILQYIKDTDGMTLSFEYNGGKILKNKALEMFNQYIELLELMCDK" + gene complement(2860272..2861909) + /locus_tag="Ccel_2387" + CDS complement(2860272..2861909) + /locus_tag="Ccel_2387" + /inference="protein motif:PFAM:PF02310" + /note="PFAM: cobalamin B12-binding domain protein; Radical + SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: tle:Tlet_1717 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="cobalamin B12-binding domain protein" + /protein_id="ACL76720.1" + /db_xref="InterPro:IPR006158" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MCSEKKIKILLLSVYCYGMRETFEEIGISYIASYLRQSGFEALL + LGQSEDNIDYKRIEEFKPNIVGLPMYDISKNGVCRVVEAIHNIMPDTLFCIGGTLPTY + NFREIMEQIPLIDFVIRGEGELTWLELVEHLNKGKSLENIEGLIYRSTEGIIVNPPRN + LIENIGDLPWPARDILKENKLKTAVISSSRGCTGKCSFCASQLFWKKWRGREPIDVVD + EMEYIVKEYGVRTFNFIDGSFEDPGINLKRVRGIAEEIIRRRLNISYFVDLRAEFFRK + ADEALIDLLKKSGLCGACIGYESANEYDLKFYQKYASVSDNVRAAEACRKYEINVVPG + FINFNPYSTFEGLRSNIEFMEEYQFANIIHLVISRVKIFTGTVLYEKIKEDNLLLLSP + EYNEYGYKFVDERITPFYNYLSDYTNYLDKESDYSLRLINYYSCQFQTLLIYLKRQFA + AKQYEKARNILNDFIVNHRNNCSEINSSMAKWFKSLLDLAQENWDIEKANNISSELLN + ASYIKEVASRLNNEKNKLFTSLVRIDLQIAEYFLNIE" + gene complement(2861971..2864409) + /locus_tag="Ccel_2388" + CDS complement(2861971..2864409) + /locus_tag="Ccel_2388" + /inference="protein motif:PFAM:PF01326" + /note="PFAM: pyruvate phosphate dikinase + PEP/pyruvate-binding; PEP-utilising protein mobile region; + KEGG: bay:RBAM_032330 YvkC" + /codon_start=1 + /transl_table=11 + /product="pyruvate phosphate dikinase + PEP/pyruvate-binding" + /protein_id="ACL76721.1" + /db_xref="InterPro:IPR002192" + /db_xref="InterPro:IPR008279" + /translation="MIGNLEAITENKSIFGSKAVMLAKLLKNGFLVPRGFALSKEIFS + EIMDFNNFCYKEQDYLQKSNEISDFIAECKIPSRVEDIIDVHLDKILQENAHAKFAVR + SSAICEDLDFSSMAGIFESYVGLDNVNEVKAAILKCYQSLFSDRALAYICENSIGLDN + LKMGIIVQEFIDGTMSGVTFTADTIDMNENLMDINVVNGICSKFVVGETISSLYKIDK + NNGCVLECNIPDSMKKIHDTEIGSLFNTFLKVEQVLKYYQDIEWTESNGKIYILQARP + ITTFKNKNFPVDNEKMGCSEYTWFLWEESPFRPLEEEVTILSRHYFNKGAAEAGHGYC + DEFTVQNGYIYTRSKDLPAEDNLDTEKLRRILAEKLDSLYDNGEIAFQDIYLPEFLNL + INQMKNYIGRKLSSHEACDFIEFALAYIKKTMEYHWIIVESGNYINVFKEYCRKEFGE + IGLDDFCSLIYNISILTKERLYLSEMAKTINNNAELKKLFFSSYSTDLIYARLSDVTG + GKELIRQLNMYAEDFAAVGIGSRCLDKVVLEKPQAVLPRIREFLFVDADSLSGTINET + MKNKENVKERLLEKVDDSKKSKFLKMLSMAEKAFLINDNHNFYIDLSSSGYLRLAVDA + ASKILADEGVIGNTEDIYFLKLDEIKTVLLNNTDYKAKIQARKQLYNEQRRMLAPWFL + GRDPGDFNYGHEEPGETSDRENNGEGVTLSGISGLRKKVTGKVHVGMPDYLEEDRILV + LPHGHCGDLLEVLSRVKGIIFEEGSPFDHMGIIAREMGIPALYGVTGAFGLIRNDDEI + ELDGIHNKVTLISR" + gene complement(2864437..2867535) + /locus_tag="Ccel_2389" + CDS complement(2864437..2867535) + /locus_tag="Ccel_2389" + /inference="protein motif:TFAM:TIGR01194" + /note="KEGG: bwe:BcerKBAB4_1783 cyclic peptide + transporter; + TIGRFAM: cyclic peptide transporter; + PFAM: beta-lactamase; ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="cyclic peptide transporter" + /protein_id="ACL76722.1" + /db_xref="InterPro:IPR001466" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005898" + /db_xref="InterPro:IPR017940" + /translation="MKLTKNGICLLLAVLFFLTPLNVLAAETVKDKTETDKLEKAIVD + RIEDHIHKYMKSGKIPGLSVVVVKDDRDIYKSSFGYSDLKRKEKVTENTLFELGSNSK + AFTGIGILQLQEKGLIKLEDSINKYIPWLKLKYKGEAVDITVEQFLHHTSGIPFESIG + YIKPDQRENALENTVKTLVGSELQYYPGTEYSYATINYDVLGLLIKIVTGESYEKYMH + DNIVKTYGLNNTFLFREQASKKGVIAKGYKVGFLRPLEYNAPIYRGNTPAGYLISNIN + DIAGWLKIQMGTSNSVNDKKLIQESHIPNRSVRPYVDGSSYAAGWSVFQSGGGELSHG + GSNPNYSSFIVFRPEEKLGVAVLANLNSSYVQTLGQGIIDIILDRETAAPQDDIYLII + DNVSVTISCIAVSIIIILLVLILHFIFQILKGNRKFEGSKIKCFVSTILSAVFILGFG + YCLYSIPEVLYWGLPWDFVKVWAPFTLMAAVISLFILAIMVIVFLNLNFLFKKNKKNN + RPLFIMAILSVFSGFGNALIIFIINQAVNGGREFQKGLFLYFMAGIVIYVAGQRLLRN + MLVNITNEDVYSKRIMMIDRILNTPYQSIERIENGRIYAGLNNDTEVISNFANVVITG + ITSLVTLICCLVYLGIINIMGLIISIIVILVAAGLYFVMGRSANKFWEQTRDIQNTFF + GFINDLTGGFKELYLNKFKRKQFSEDMKDKCYIYKEKRIRGDMKFNNVFIIGELMFTL + VIGVVVFFFPVFLSNIQNTELKNYVLVFLYMTGPVHGLLSTIPNIFQVRISYSRISEL + IEQLPSIEDSENEKKALGADSSEKLNISLRGVEYSYINENSEAFKVGPIDCTFKSGEI + IFITGGNGSGKSTLAKLITGLYQPDNGEITLNEVKTEISELVEKFSTVFSDFYLFKRL + YGVDSINKSDDIKKYLELLHLSDKVHIEDGEFDTLKLSTGQRKRLALLITYLEDRPVL + LFDEWAADQDPEFKRFFYRTLLPDLKTRGKCVIAVTHDDRYFDCADRIIKMETGSIYS + EK" + gene complement(2867566..2872038) + /locus_tag="Ccel_2390" + CDS complement(2867566..2872038) + /locus_tag="Ccel_2390" + /inference="protein motif:TFAM:TIGR01733" + /note="TIGRFAM: non-ribosomal peptide synthase; amino acid + adenylation domain protein; + PFAM: AMP-dependent synthetase and ligase; condensation + domain protein; phosphopantetheine-binding; + KEGG: bwe:BcerKBAB4_1782 amino acid adenylation + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="amino acid adenylation domain protein" + /protein_id="ACL76723.1" + /db_xref="InterPro:IPR000873" + /db_xref="InterPro:IPR001242" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006163" + /db_xref="InterPro:IPR010060" + /db_xref="InterPro:IPR010071" + /translation="MDGICFSNDRVLYPLTHPQKRIWYMEKIYPGTSLYNIGGPVRVK + GTIDFSILEKAINLLIKRNEGLRLRFIEKNGQVKQYVSDYEKIKLDLFDFTQYENPEK + EFNKWVDKQAEKPFAKENRGLFYFAMFKLSDNDNGYLAKFHHIIADGWSINIMTQQIC + DSYMKLINEEEIDNDSGGESYIGYIDIEKKYISSDRFQKNKAFWNEKFKELPEVVTTK + NSDSIEGKRKTFELEPSISTGINSFSAENKYSLNAFFVTLYLIYLYKTSQQKDIIIGT + PVLNRSGKKEKSMFGMFTSTMPFRYCIDNNSSITETMSKVSEQLKECYFNQKYPYEFL + VQDLELKKKGYGSLFNVCINYYNTKLNSELNDFPIENVEFYNGKQTYSFQLVIKEWSE + SLILDFDYKVNDYTDEQIAEMYIRLLNLINQIIKNPSKKIGNLSLLSEEENNKIVYLF + NATQTEYPNEKTIYQLFEDEVERSADKPAVVFNSTEITYKELNEKANGLAGYLIKRGI + KREKIVGLATSHSIETVIAILGILKAGGAYLPIDPTYPVERVNYMLEDSEACLLLTNV + EIGKSLNFDGDIIDLKDESIYKSTAVNPGLVNRPDDLAYVIYTSGSTGRPKGVMIEHR + GLVNYIWWAKKMYIKDSVEVFPLYSSLAFDLTVTSIFTPLISGSKIIVYDGNSEDEEY + VLYRIMRENKSTVIKLTPAHLSLLKDMDNKKSTVKRFIVGGDDLKVKLVQAIYESFGG + NIEIYNEYGPTETVVGCMIHKYDYSKDTGTSVPIGIPAKNVQVYILDGNLNPVPADTE + GELYISGDGVARGYLNRPEQTRERFITNPFLKGKRMYKTGDSGRLLKNGKIEYAGRLD + YQVKIHGHRIETGEIEECLLNHRGVGAAVVISLQDRNNEKYLCAYIVNKSEVSEQELR + EHLQGYLPDYMLPLYFINVDKIPLTVNGKINKALLPKPNEDSTEEEEFVPSRTENEKE + LVTAISEVLNLERVSIRQNFYRLGGDSIKAIQIASKLNDNGFRLKVKDIMSNPLIKDM + ALNIEKIGVGMVDTEPCKGSIRHTPITAWFFRQGFAEPSYYNQSVLLELKRTYDVKAL + QTVFENLIRHHDILRVNYNKETEELFYNNDYLEQPFHIKEYDLSECKPYKQSEAIEKI + SEELKASLELEKSILIKVCVFWLSENEKFLLITAHHLIVDGVSWRIILEDIYTMLKQL + SNSSEIVLPEKTHSYQIWAELLQVASNNSAELKERCKPGLCEYCYPVDFDKGHDLMEF + SSTVKGELTDEETRKLLLKANGAYNTNTNDLLIVALAKTISEKTKFNTVYLEIESHGR + KELAGDFNFTRTVGWFTEMDVFRLEIEHGELSQVIKTIKNQLRENSNKIDRSDLQKKQ + IRFNYLGDFGTNFENDLFCIRYGDTGLDCSRNNVMTALIDINAIVVNDRLKIEVLFSD + NKFKKVTMETFLISFINNLKQVIEHCCNRKTVEFTTSDFDTIGISQTELDSLFS" + gene complement(2872095..2873069) + /locus_tag="Ccel_2391" + CDS complement(2872095..2873069) + /locus_tag="Ccel_2391" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: baf:BAPKO_4042 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76724.1" + /translation="MNFSIGIRPFNDFWLNCRYNMLFSILSTIDSSYRLAASMNDYGY + KVTKEETPTGTKYNKLLIDPMVEFQEKYLYEIASIQQLNFKHDENYVEYLKNLVKNNE + LVIVGVDLFYWIENSSCWNRHHWEHYSLINGFDDERNVFYVLDENDIGFGEFEIPVDR + FITAIQHSPLEPHGYIYKIKKNIKQFNFDIKDVINNANRLKNELSTIKSCSFWQLRDE + DFNAGHMCDLSATELFQIVNRQIANQLLFGNIQKEVHNYEIPDTIVKYCNDLKEGWIL + VKNLLVKAYLLKDRKLSLKEIDKSCKDLLNKEYEMWKIFLSSLEPKYI" + gene complement(2873612..2876236) + /locus_tag="Ccel_2392" + CDS complement(2873612..2876236) + /locus_tag="Ccel_2392" + /inference="protein motif:PFAM:PF00759" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; Carbohydrate-binding CenC domain + protein; glycoside hydrolase family 9 domain protein Ig + domain protein; + KEGG: cac:CAC0561 cellulase CelE-like protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9" + /protein_id="ACL76725.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR003305" + /db_xref="InterPro:IPR004197" + /translation="MKKRVLKKIAMLMVIVFVLSSCALQAFAVEYEGAGDLIRNHTFD + NGVGFPWRVVESYPATADYDITADGKYKITITKIGAAGIGQRWDVQFLHRGLSLVNGH + TYTIKFTVTASRACKIYPKIGDQGDPYEEYWNMNQQWQFLELQANVPKTVTATFIQTK + GDKKNVEFAFHLAPDICTSEAQNPASFQPITFTFDDIYVADPQFAGYPAPIPEPTNVV + RLNQEGFYPNADKIATVVSSSTTPINWQLVNSAGTAVLTGKSTVKGADHASGDNVHII + DFSSYKTAGTGYKIVTDVPVTNIGDNGSMPFNISNDIYSKMKYDSMKYFYHNRSGIPI + KMPFCDQPQLARPAGHTNDILAPDPTKDYRANYTLDVTGGWYDAGDFGKYVVKGGIST + WTLMNSYERALYLGDTSVVPFIDGSLNIPESGNGFPDILDEARYNLNTLLNMQVPTGN + TLAGMVHYKAGDERWLQLAIRPDQDTMKRYLQPPSTAATLNLAAIAAQGSRLWKQYDA + AFATKCLTAAETAWDAAVEHPDKYIYINSVTGIGTNGENYFLDDFYWAACELYATTGS + NKYLNYINSSPHYLQEPSELTAGDMGFTGCFDLDNTAGMGTITLALVPNGLPAADIAK + AKANIQTAADKFISIEKAQGYGVPIEEKVISSRFDQSTVSGFPCGSNSFVINEAIVMS + YAYLFSNKNTKYINGAITAMDYILGRNPNVQSYVTGYGDNPLENPHHRFWAYQADNSF + PHPPAGCMSGGPNSGLQDSWVKSLGWQPGKVASEKCFLDNIESWSTNEIAINWNAPLA + WVSAFLDEEGRVICGGDTLGDINGDGQRDALDFALIKKALLNGDTSIQNADVNNDGSV + DAMDLALYKSFLLGKVNF" + gene complement(2876269..2877837) + /locus_tag="Ccel_2393" + CDS complement(2876269..2877837) + /locus_tag="Ccel_2393" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: btk:BT9727_0789 S-layer protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL76726.1" + /db_xref="InterPro:IPR001119" + /translation="MKKFMKKFAVLLIGATLILSGINTQYVSAAGFKDVKSTDWYYSS + VNRLVNSGITSGVGSNSFGPEKIVTRSEMVTFLCKAIGLTPSDGDTFLDITKHWAKKW + ITAAVTANIIDQGEIFGPDEAITRQEATEMLCRALGLSAETLNETPFCDITTDTGYCT + RAFEEYLMLGSVKDNERYFYPFSFLKRSEAAAIIVNLLDYKSDKDSFKAQKKVLLDKQ + EKETPTTKKIQQIEVTVSTPDELIKQIGSNKRILLKPGVYNLSSIKQLDNKDKTVTWR + QVDDGKELNLSGIHNLTIEGINNQTAEIKVNPRYAEIINFNYCKNITLKNIKAGHTPS + EYTCNAGVLSFTNCSDIEVNNSELYGCGSVGISAYSTKRLNCVDTIINHCSLRAINLS + KSEKINFTGCKILNHEAYSNIVNIYSSKEVTFEKCEFTDNNNFEWGFFEVWQNTELLI + DKCKIVNNFQPRYDTQDASAYFFKTQEFDGVSTSKITVKDTEITNNRCDYLCDDKNSV + TFENCTISGNEWEE" + gene 2878143..2879387 + /locus_tag="Ccel_2394" + CDS 2878143..2879387 + /locus_tag="Ccel_2394" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: amt:Amet_3887 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL76727.1" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MKNYKPVYSIIASIAIQLCLGVAYLWSLFQTGIAKSIFDGDNAA + ASLTFSLLLATLTLGSILGGKLAAKYSIRTVVIIGGVILSLGFFFASFVTASVPWLLW + LTYGVMGGVGMGFTYSTTISCAQKWFPHKKGLVTGVIVSALGFGGVVFTPIIEVLIKQ + FGGQQVGEQKTFMVLSGLFLVICTIGGLMIKNPPDDFENKKSGPSRAAGQESPVLTGS + DLSPKQVLATPSYYFVTLAMALACMGGLMMIGFAKPIAVAKGLESTAVVGVLIISICN + SFGRLLWGIISDKIGRKLTLIILLAGSGGMSLFVNAASDYWIYVVIAFIGFFYGGFLS + NFPALTADLFGARHMATNYGLVLLGFGIGAVVSSYVAGYYKNIAANDISLMFPAFIIA + AICAGVGILLVLPLKVKKASVQ" + gene complement(2879578..2880513) + /locus_tag="Ccel_2395" + CDS complement(2879578..2880513) + /locus_tag="Ccel_2395" + /inference="protein motif:PFAM:PF00657" + /note="PFAM: lipolytic protein G-D-S-L family; cellulosome + protein dockerin type I; + KEGG: gvi:gll2764 unknown protein" + /codon_start=1 + /transl_table=11 + /product="lipolytic protein G-D-S-L family" + /protein_id="ACL76728.1" + /db_xref="InterPro:IPR001087" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MYSLRKRLLSLIMVLSICLCVSSVCNANQATTQGVTAAASGLIG + DLNGDGAIDALDYSLMKQFLLGTVTDLPVQDDLYAADLDGDAKITALDLALSKQYLLG + LITKFPKIPPQNITTVIMPLGDSITDGITVPGAYRIKLWNNITSAGQKVDFVGSMSNG + PTELGDKNHEGHSGWRIDQIDANINAWMTTYKPKIVLLHIGTNDISQKYDLNNAPNRL + SSLIDKICAKLPSDGKLYVAKVIPLSYADVRNYNTQVAQVVQNKANQGKPVFVVDMYS + AVTTADLPDGVHCSRTGYDKMADVWYNAIKNDLGK" + gene complement(2881138..2881661) + /locus_tag="Ccel_2396" + /pseudo + gene complement(2881677..2881955) + /locus_tag="Ccel_2397" + /pseudo + gene complement(2882263..2882493) + /locus_tag="Ccel_2398" + /pseudo + gene complement(2883442..2884098) + /locus_tag="Ccel_2399" + CDS complement(2883442..2884098) + /locus_tag="Ccel_2399" + /inference="similar to AA sequence:KEGG:CLL_A1624" + /note="KEGG: cbk:CLL_A1624 SMI1 / KNR4 family" + /codon_start=1 + /transl_table=11 + /product="SMI1 / KNR4 family" + /protein_id="ACL76729.1" + /translation="MIDLSKLSNVELYPAVNSVEIDRIESEMGLKLPKVFKELLYLSN + GFVTDDGIAIFGTDIIAERNLTYEVPEYAEGYIAVGSNGGGKFLLMLANEESTQLLQV + DCGVMNPEYATLVTTDFSEWINEGAKSFDLIEEIKNKEQLYNLVLVEQPKGGAQDLKK + IQECYSIKTGLFDLLKGSKKLPFTMMKNISLNVAKKNLESLGELGKILKIIPSDMDTL + " + gene complement(2884095..2888096) + /locus_tag="Ccel_2400" + CDS complement(2884095..2888096) + /locus_tag="Ccel_2400" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: psp:PSPPH_1453 rhs family protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76730.1" + /translation="MQFANKVQQSKEQSWSSENKGLQNRPNFQKPGKPKGVRTTDLRK + MAEIFLNYPDTVTREEFMLFQKAVGYRQAVSLLAEGRRRKNQDKTEKIDKQDKKLSIE + EKYDRHNAENISGEKQKAGQAEDSSNIDKISAEKDTAIKAAEKPANEEQGRKAIKTMG + QKKKAEKPQKKEIKETAKKSEPQAIAELKPKDLNKEQNTKAKNKSSADKQSQQTKGPV + NAAKSQKSSSMPHKETSELQKRNEKQKQAIAQKQDKPAVAASGKKQQNPASGGISNAI + AGLGAGNKNAKKAPTVNIKMGEPENILKQMENVPPTQVLHAYSQVTDISKASLEKQTQ + KTQAALPKVAAPTGLAPVKKGSAPKSKAIAIKHIEPTNFKGVKTGGKEATIGNINIGS + EKEPDPEEIMAEARRYSADAPAVSLEGEADPSQTEDFNAEASQAVEEAKQKELTLLSN + EFGEHNIFPKEDNSILKAKKTLQTKQTKINKVNRTLNISADMEAQMNKSLAPDFKARV + GEQQSKYSTGKEKFDTDVAAARTDSDNQITQLKEDSKNKQLEQQEGAKSEVERLKGQW + KNEVDQAVSEYDKEAESETKSKTSEISKVKEQKDKEVKDKLKQAEKDASTEYKSAKKN + ADDTKKEKEKEHENKKKSWLEKAGDWLAEKANQFVEGLKKAVNFIFEGLRKAVKAIFE + AAKAAVVGLIELGRQLVVNIIKGLGTILKGLVKAVFAKFPGIANKICGFIDKAVNKAV + QVVNTIADGFKKGVSAIIDALADTVDALLGAIQYLYNQALNVIGMIAGKLAEVMAGIA + RLGEAAEASLPHIEGKLWEQLIGADITQPMGDEVSEPTPEVEATKSSADEKLTENDVE + IENVETGEIDPELLQDMNIKDGETKYVEGSKNPETVDSIMNDFDSDKETGKTGNSFAD + GVKTRAENAAKLLDQIKGFVIKWLKENWLKLLLGVTAALGGVILLNILTGGAITAALP + IILEVIVNVMNAASIIEAITGAAKNIATYLSQGWAGNIGVAAPALATALAIGLLALAS + VVTSKLKKTGAFAKASAKGNATKKAITSGIKKTAKSTVKGIKNLLKSGKKLISKSGKF + LIEKGKLVIKRLGNIFPKGMKKLNDLTSKILAKFKFKGFEFKLEGSYVLIFGIFNPKK + LIAKLKIKDAGASDARLDYLRSKYGKLSPEQLHANINERAGISFSQRSSNGPIKQGGY + KTYDVDAYKKMGPNINRTPGYGTSKADGLVQAHHPIQDEWAKQWAAANGIPYNSGQAP + TILLESISGSNHATLSSLQRIRRRTEGFNTDIRYEFNTSYREMLQAGVDPSMAKKAIK + EAYKYFDGLGGFR" + gene complement(2889140..2891527) + /locus_tag="Ccel_2401" + CDS complement(2889140..2891527) + /locus_tag="Ccel_2401" + /inference="protein motif:TFAM:TIGR02504" + /note="TIGRFAM: ribonucleoside-diphosphate reductase, + adenosylcobalamin-dependent; + PFAM: ribonucleotide reductase large subunit; + Ribonucleotide reductase large subunit domain protein; + KEGG: cth:Cthe_0053 ribonucleotide-diphosphate reductase + subunit alpha" + /codon_start=1 + /transl_table=11 + /product="ribonucleoside-diphosphate reductase, + adenosylcobalamin-dependent" + /protein_id="ACL76731.1" + /db_xref="InterPro:IPR000788" + /db_xref="InterPro:IPR013344" + /db_xref="InterPro:IPR013509" + /translation="MKLSENAVKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADA + AYTDEKGLAVIEHEFYNMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFE + SIKNAALIHKSGGGTGFSFSRLRAKGSAVNSTGGVASGPVSFMKVFNAATEAVKQGGT + RRGANMGILRIDHPDIMEFISCKSDNSEITNFNLSVGITEDFMRAVEHNLEYELLDPR + TKKPVAKLNAREVFDIIVEMAWENGEPGIIFLDRLNRDNVTPKLGEIESTNPCGEQPL + LPYEACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKYPLPEIDRMT + RGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNLAELKGVF + PFYEDSIYAQKGIKMRNATTTTIAPTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELV + EVNPVFKEAALSGNFYSDELMKKIARVGTVKNMNEVPTNVQEIFVTAHDVLPEWHVKM + QAAFQRHTDNAVSKTVNLSHDATTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIG + KVKGKEENADKSLPAGENIYCDSCRVNNMPGKIEPRPRPDITTGFTEKVGIGCGNLYI + TVNYDENGICEVFTNTGRAGGCPSQSEATSRLVSVALRSGMDVKSIVEQLKGIRCPST + IRQKGLKVLSCPDAIGRLIEKVAKIQSGKDDDVQGEISATTEYSLLQRPSARTADAEQ + SECDLQCNSCTMKELCSNPSNEGDYVSAECPECGKALEHEGGCVICRSCGYSKCG" + gene complement(2891690..2893021) + /locus_tag="Ccel_2402" + CDS complement(2891690..2893021) + /locus_tag="Ccel_2402" + /inference="similar to AA sequence:KEGG:Cthe_0051" + /note="KEGG: cth:Cthe_0051 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76732.1" + /translation="MSKRKNITTVVTSLFLSLTVATGAFFLTGCNENGTKAPQSVNTS + GKTAEQTNAASSSAASIKTKPSDTTSANSTAAASDSTKQEQIPQSTGLQLSPGIEQVK + VKAVYLTGPSAGSAARIDKIISMAKNTELNTVVIDVKEDGAVNYTTNLDLVKKYGKQV + KYYNPKDVIKKLHDNGIYVIGRIVVFKDPVLAKNRADLGVKAPSGKLWLENGTTPWTN + PYMEEVWDYNLAIAKEAISYGFDEIQFDYVRFPTGGKKSFNFGTNVPEKAEAINGFLA + KSQKELHQELGVPVSADVFAIIIESKLDGESIGQRFQEVGKDIYCISPMIYPSHYANN + SPKGIMSNGVGQMINGVTYTKPDLDPYGVVYNSLLSAKKKISETTGYKAKLRPYIQAF + TAKYLPAGYFQTYGSEQVKQQIKAIYDAGYEEWILWDPSNKYQESYFEKEK" + gene complement(2893272..2896790) + /locus_tag="Ccel_2403" + CDS complement(2893272..2896790) + /locus_tag="Ccel_2403" + /inference="protein motif:PFAM:PF07691" + /note="PFAM: Fibronectin type III domain protein; PA14 + domain protein; + KEGG: cth:Cthe_0316 PA14" + /codon_start=1 + /transl_table=11 + /product="PA14 domain protein" + /protein_id="ACL76733.1" + /db_xref="InterPro:IPR003961" + /db_xref="InterPro:IPR011658" + /translation="MFKKAFCVLMALIIMSGIMIPQTVRAESNIDNGGTNTQSDGQRL + TVQIHRVDSTLFWFNNVISNHGYEDWFPDNNSCSDYNYNNGIFQFIKVKITNTSNSAI + TLNSNNQLVLRFTNKSGKELGLKLYEFSAYKNIDKSNREYTFGSSLLSNKTIKSSGTL + EIYGYVKWMDFSELGCSIVRQPDENKIQVRLTEKSYPTNPSEFASKDRIHSVLKLYNE + GNKVIDLDKIRIHYYFNMDGDLNKVAPKTEKVEGKIYNYQPDRTNPQEDVIQTLPSVF + INMGEYSTPKANCFIEIGFPSKSNGSSYTNYLYKFLRYFSSLWNDMFIKHDLNWLDDI + LGKNVNIEGSNCSSDNQKHRWWWNWRQDYTLSSKNYELSAKSGNNTSHADIELEIVKE + FIAQTTGDTSNIRKFNQANHYSFNPGQEMDWERVTVYYKGELIWGKEPGHELTVPLNL + QAISKRDGILLRWDEVNGAEGYKIWRKGPGDSDFVQLPQILSDSSITDNNVKPGETYT + YKVQAVSDSGEQLGPFSNEASATALIMTGNGLYAEYYNWKSVAGSSLTNYGYDLGNSF + TTNYVMENTELAMSRIDPKIDFTKDNTDTYYRWGDKAPDPKVNADHYSVVWSGYIMPE + FDADYTFYTRTDDGVKLWIDINRNGIFDINELLISNWQKHSETENNSRSVQMEKGKKY + RIRMEYYENEYDAVAKLLWSNPSKAKEVVPNSQLFVDGTINIPKTPTNLKADLKNDGS + VVLSWDSVLEAQGYKIYQTDWQGNTSIINVKDNSYTVLNLASGEYKFSVSAWNEAGES + AKSESVKVVVGLGAPQNLKGTVNKKTINLSWDSVDTASGYRLYRVLDGIQTTVLSVDS + KYTDSKVSYGKVYKYFVSAIKDGYEGAKSREITIAVPPDAPANLKAAREGESVQLRWN + PAQGAQSYSVLRCNSSDGTYEIIKEGITGTSFKDDSVPETTNSSGVKYYYKVTAVANG + VAGPCSNIASVIMYPFVETQLGFVTYNIINNSKNPNLEFVLGSYVPVSFELQLKNTTS + NPGIVMDTEMVNKMNINEKPFFLELVSKNIKVTIKKKDAIEFFKVNDNSITKKVIKVN + GRNVVKIEVNGTYDAGDVVKIEFGPKVFTYKDDDVEAYYGNMYQLELGLYADGYGSSE + KPIKTDVSGNTLPPLEVKIANPDKLN" + gene complement(2896816..2899380) + /locus_tag="Ccel_2404" + CDS complement(2896816..2899380) + /locus_tag="Ccel_2404" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cno:NT01CX_1600 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76734.1" + /translation="MCKMRVFLKKCNGSTLAMVLFLVFVLSATALAVMALTGSELILS + TVTSDRSKALFAAQAGAEKAAQRLDTEVGRIQDSARVTSSEVIKKAIDKKLPVFNEII + DTTDPNNIKVLNEKELNNIYESEYKYQFFKMVMEWINEQTAAGGEWDSTIPHGVQHVV + TKEGKNVTINDGSFNYSVIRPNPTKKTYSSKVNSYTHEANEISSITVKSTGEYKSGKH + AYKRSISAEFSLLTESVNDNSEIPIIYSKLTKVKVNKDNKPEILKNKAVVSRKNIISV + NGTVNIEKGNAICFGTIPTLNGTGINYSADGYKYGGFMAGMTRDTWNDINLGHNNKSI + KDSIIETIPGMYDYDFTNFPGSFNIQAGDAVTAAYIHTLYSNANSPSKINIQKGDVFA + RSVKVENKAHSSEVNLKNVFLTDDLRIDSNNSTVNIGEWEGEKAGEGMLVGLNPGDSA + SGYDTSSAVIVSGDSNLNINGSLYIGGTTYFNEYTSITDNKMYFSGISVLKSGSLPAE + AFRVWDDIEIPSKEVYPGNVFYLYDKYRDTNGIPDADDYINVNDPMEQQKLISAGFKY + KSESESQPDDSPPVQMMMGSQSNSLFNILDRAMHFKWVWDAFWKDDIGYYSYLNSGDI + KIVHYEKADDGKYFKNTGKIKGWCFGAVAANDTVYGPYGGFTEDDGKYYIEKGMRSVV + YRNNMSIFVQEFGQVMDAKPAKSLTDDGNAKTAGLINKLIRWDETVVSKSGLFFLNSS + GNVVLSSSKVNGVDILQDDDGYVRGIIYSAGDIYVEAGTKFKGILIAEGNIVFLGGAD + ISYDENTVDILLSEEPDAGRLFNYSASEIVLSNSSIKTIKKPNVKNIKITSWKEEK" + gene complement(2899373..2900290) + /locus_tag="Ccel_2405" + CDS complement(2899373..2900290) + /locus_tag="Ccel_2405" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbt:CLH_3049 prokaryotic N-methylation motif + domain protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76735.1" + /translation="MIKFKKLLKNEKGETFIEVLAAVTLLAVIAGPLLSMVMSSYYYN + RDAEQKTKAAAIAQMVMDEVKSKKNLSTGDSYLPFNIEPFKEAVNTKLQPYYKIENVE + TGKLTPENDYTYDYSEADEPDLELIIEQGKSGDNNITKIELKALNEETDPIKIDTGFN + YRKDNLVMQFEKNGSKIICGIGKSFPVKTVEFTPASQDCIKLKLSCKNDDGKPNSDKQ + LKVFTYSDQEINLKAYVTDGKELEPGVCFINKSSNMEYEINYMETKAFNYGPINELLK + IVVEVRKKDGTVIYTASSYVKKVTGGYNV" + gene complement(2900306..2901706) + /locus_tag="Ccel_2406" + CDS complement(2900306..2901706) + /locus_tag="Ccel_2406" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cno:NT01CX_1598 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76736.1" + /translation="MKLTQRDKKLLIVLGVVIFTVVFLKFLMLPKLGSISQLKTDIAI + LNDSYAVNMAYKAKVKRIDGDIKILSKKLGDLREIYPPSIDSDELLVLMMNLTSEAGL + EVKSISFGDIGGMDGTKADSKADPESESKDTTQKEEGTPDAKVDNISENGDGSKLGNG + ILSDIRNYFYLWGLKSKKNSVVDDAVPDGNSYGVSVKLEATGDNEQIKAYFDKLSKLK + NKAICKAVSISPSQNGGQNDKDRKNLKLNAEIVFYGIMDKGAGDYYMLEDGKWAPIPA + NGKKDIFKSYSGFSVLGQSGHTQNTGINDTKNSVEDKAKSQLDEIIPGTYDFSVVASH + FGGGLAPSVSINCKNPASSENSFSVVYGDNKGTENAEIFIEQKNGKYYCKFKTDHESY + PDRQYSQTMEFIPVGEDLKLVIISSERQDENDQSGIKLNIINNSDKQFVYQIFMDDSD + LPRVEIGKTVGKVIRQ" + gene complement(2901766..2902764) + /locus_tag="Ccel_2407" + CDS complement(2901766..2902764) + /locus_tag="Ccel_2407" + /inference="protein motif:PFAM:PF05137" + /note="PFAM: Fimbrial assembly family protein; + KEGG: dth:DICTH_0890 fimbrial assembly membrane protein, + putative" + /codon_start=1 + /transl_table=11 + /product="Fimbrial assembly family protein" + /protein_id="ACL76737.1" + /db_xref="InterPro:IPR007813" + /translation="MKDLNLIPKSLIVDKKNKAKKTYLSILIICIGLIAVTAYTAPAI + YEINLRNDKQQLEKQVNSTASYVETLNEFNSLKKAVEEREAEGKKLSLNRIDVLGIVS + AIENSCPEKLFIQNFVSTGNNDSDTKIVLKGVSTDENTLASFLRNLMDDDYFNNVVLS + NISNKQGNNGTTFEVTLNGIKKSDLIIYNNWNNGFRICYEPDWSKKVDKDDSVLFTAN + KRLTSTDADSLEITVTSTELTSKEFTDKRMNKLKYELEGFKKIYTTKTKSSGEEAYKL + MYLGDEKGTRYKYSELLIVKDSKGYIVKYKSDPNSFEVKERTIDRILKSFTAIKSP" + gene complement(2902796..2903320) + /locus_tag="Ccel_2408" + CDS complement(2902796..2903320) + /locus_tag="Ccel_2408" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76738.1" + /translation="MNIKSEKGVTLTEVIGAVTILLMLMVPLTFIFTTTYSKCVVEAD + KAAAQQVAREVLYGDGINFNGIIGDLEKSNSPISEVVTNGCSISIPSNTESRDYLYEP + DANVGVIKYNGKRINDKSSSGKEINVTDFTVQLIYKKDLNDNDQLRVQVRVSCGRSGI + VEVESGYRFPNIEK" + gene complement(2903360..2904415) + /locus_tag="Ccel_2409" + CDS complement(2903360..2904415) + /locus_tag="Ccel_2409" + /inference="protein motif:TFAM:TIGR01175" + /note="TIGRFAM: type IV pilus assembly protein PilM; + KEGG: cth:Cthe_0656 type IV pilus assembly protein PilM" + /codon_start=1 + /transl_table=11 + /product="type IV pilus assembly protein PilM" + /protein_id="ACL76739.1" + /db_xref="InterPro:IPR005883" + /translation="MVRKNLLALDIGNDTIKVVSGSANKKNIVINEYGIVKTPAECVN + DGMIIDTAVLSKVISEAVKTHKIGGGALVMTVTGTGVITRDIVLPKSTEQEIEKMLEF + EAQQYFPVDLKDYTVDFKVMENMGDQIRVLVVAAPNKQIETYINLTKLLKQQLAAIDI + PSNCVLKLLSFSPLYSDETAEEYAVLDIGRDTSGVCFFRNDVLKFSRILLSGVSEVDS + IIANKYNLEFKAAEELKRSFKGFNSQSDSEDKFNDLGEVITGALDSIVSDLNRFIEFY + NSRDNSNNVEKIYIYGGGSKLKGITEYFSSTFNMPVLPFPLLKEIVYKGHKEREAFEQ + DYPFLINAIGCLTRAFK" + gene complement(2904446..2905243) + /locus_tag="Ccel_2410" + CDS complement(2904446..2905243) + /locus_tag="Ccel_2410" + /inference="protein motif:PFAM:PF06750" + /note="PFAM: peptidase A24A prepilin type IV; peptidase + A24A domain protein; + KEGG: cth:Cthe_0852 Type 4 prepilin peptidase 1. Aspartic + peptidase. MEROPS family A24A" + /codon_start=1 + /transl_table=11 + /product="peptidase A24A domain protein" + /protein_id="ACL76740.1" + /db_xref="InterPro:IPR000045" + /db_xref="InterPro:IPR010627" + /db_xref="InterPro:IPR014032" + /translation="MQTLLIIYILIFGLVIGCFLNVCISRIPQKQSIIRPSSRCNSCG + TTLRHLDLVPVFSFVFLRGKCRYCGEKVSAINPIVEIITAAVFVVLYLKYSLTVEFAA + MALLSCILICIAFIDAEYKIIPNGFIIIGLISGSVLLLYNLFYPVDIFGDRVWFNPIL + GFIVGTSFLLIVSLVGMLVYKSDDAMGMGDIKLFAVIGLFLGWRMTIISLMLSVFTAA + IVCVLLIIIKKNNRKSTIAFGPYIAIGTFITIIYGWNLLERYMTLLK" + gene complement(2905248..2905634) + /locus_tag="Ccel_2411" + CDS complement(2905248..2905634) + /locus_tag="Ccel_2411" + /inference="similar to AA sequence:KEGG:TTE1265" + /note="KEGG: tte:TTE1265 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76741.1" + /db_xref="InterPro:IPR012902" + /translation="MFKFFKKVKKNKKGYTLTELIVVVAILAILAAVATPMVLNQISK + AKTSADAANEKAIENAYLVGMADASDTTVPADLTGVKKKIGSALTTIPKPHDGKKKFY + LNPTTGEATATTATPSPVSSWIELNP" + gene complement(2905673..2906890) + /locus_tag="Ccel_2412" + CDS complement(2905673..2906890) + /locus_tag="Ccel_2412" + /inference="protein motif:PFAM:PF00482" + /note="PFAM: type II secretion system protein; + KEGG: amt:Amet_3480 type II secretion system protein" + /codon_start=1 + /transl_table=11 + /product="type II secretion system protein" + /protein_id="ACL76742.1" + /db_xref="InterPro:IPR001992" + /db_xref="InterPro:IPR003004" + /translation="MANYIYNAKTKSGETVSGNVEASDVNMAIAFVKDRGYFPMAVYE + NTGPGKEIEFKVHKRVKVKDLSILCRQFHTMLNAGVSVIGCLDLLRSQTQNPTLRDAM + SQLYDDVQKGKTLSESMKLLSKVFPVLMVSMVEVGEVSGTLEQVLERLSVQFEKDIKV + KSKVSTAMMYPAVIGCIALVMVTFMIVFIVPKFVSMVNSVGGTLPMPTRIILFISGLF + TNPLFLLGFALVIVAGVWGFRRFKSTEYGKHLIDSLIFKMPMVGANVQKILASRFTRT + LSTLLKSGVSLVHALEVVDGVVNNQIVSRGLIKVKESIKMGSNLAAPLEKMGIFPLMV + THMISVGEEAGSLDSIMEKVADFYDEEVETSVSKLVAMMEPLLMMVLAIIVGFIVVAM + ILPIFSMYQGVGQ" + gene complement(2907017..2908072) + /locus_tag="Ccel_2413" + CDS complement(2907017..2908072) + /locus_tag="Ccel_2413" + /inference="protein motif:TFAM:TIGR01420" + /note="KEGG: tpd:Teth39_1068 twitching motility protein; + TIGRFAM: twitching motility protein; + PFAM: type II secretion system protein E; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="twitching motility protein" + /protein_id="ACL76743.1" + /db_xref="InterPro:IPR001482" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR006321" + /translation="MLSLEDLLKKTLEFGASDLHLTVGIPPTIRKNGRLSTIGEEKLM + PSDTETFVRSMLNEEQWRKYQDTGELDLSFALKGMGRFRVNVYKQRGTCCAAIRMVNL + VIPSIEELGLPNIIMDMSRKTKGMILVTGPTGSGKSTTLALLIDLINKNRDCHILTLE + DPIEYLHKHNKSIVNQREIGNDSQSYSAALRAALREDPDVILVGEMRDTETIAIAVTA + AETGHLVLSTLHTIGAANTIDRIIDVFPPYQQQQIKVQLSTVIQSVISQQLLPRKDKL + GRVPAIEIMVATPAVRNLIREGKTYQINSQIQTGAKFGMQAMDSSLASLYKKGIISQE + DAMTYAMDPDNIIRYMG" + gene complement(2908131..2909825) + /locus_tag="Ccel_2414" + CDS complement(2908131..2909825) + /locus_tag="Ccel_2414" + /inference="protein motif:PFAM:PF00437" + /note="PFAM: type II secretion system protein E; General + secretory system II protein E domain protein; + SMART: AAA ATPase; + KEGG: tte:TTE1262 pili biogenesis protein PilB-like + ATPase" + /codon_start=1 + /transl_table=11 + /product="type II secretion system protein E" + /protein_id="ACL76744.1" + /db_xref="InterPro:IPR001482" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR007831" + /translation="MFNKTRKRLGDLLLEVEMITPNQLESAIEVQKKTSEKLGSILTK + LGYVTEDDIIQVLEFQLGIPHVKLEKYNIDKSAYLAIPESIARRYGLIPIKKENGTLT + VAMSDPLNVFAIDDLNIYSGMVIQPVIASFDDISKAIDKYYSAQKAMKAVEEFKKEQV + STIKINSDTTEEQNIEEINNAPAVKVINSIIEQAVRNRASDIHIEPFEEYIKIRFRTD + GQLCEIMRPEIDIMPAISARIKIIGGMNIAEKRLPQDGRISIEVDGREYDLRVSILPT + IFGEKIVIRIADKKAFVLSRSQLGFNEYEEKQFHKMLLNPHGIILVTGPTGSGKTTTL + YSAISEINSPDINIITVEDPVECVIEGVNHVQVNTKTGMTFATGLRSILRQDPDVIMI + GEIRDRETAEIAVRAAITGHLVLSTLHTNDAPSSVLRLIDMGIEPYMVSSSIVGVIAQ + RLYKKICNNCKIEYTANDDEKRILGITDKETVLYKGRGCPMCNRTGYRGRHGVYELIS + ITKKHKEMISNRCSEVELRNYSIQNGMVTLRDNLVKKVLAGDTTIDELVRIAYSND" + gene complement(2910081..2910156) + /locus_tag="Ccel_R0056" + /note="tRNA-Asn3" + tRNA complement(2910081..2910156) + /locus_tag="Ccel_R0056" + /product="tRNA-Asn" + gene complement(2910162..2910277) + /locus_tag="Ccel_R0057" + rRNA complement(2910162..2910277) + /locus_tag="Ccel_R0057" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(2910528..2913440) + /locus_tag="Ccel_R0058" + rRNA complement(2910528..2913440) + /locus_tag="Ccel_R0058" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(2914118..2915758) + /locus_tag="Ccel_R0059" + rRNA complement(2914118..2915758) + /locus_tag="Ccel_R0059" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(2916426..2917082) + /locus_tag="Ccel_2415" + CDS complement(2916426..2917082) + /locus_tag="Ccel_2415" + /inference="protein motif:PFAM:PF03167" + /note="PFAM: Uracil-DNA glycosylase superfamily; + KEGG: cth:Cthe_3109 uracil-DNA glycosylase superfamily + protein" + /codon_start=1 + /transl_table=11 + /product="Uracil-DNA glycosylase superfamily" + /protein_id="ACL76745.1" + /db_xref="InterPro:IPR005122" + /translation="MDKDTMQNRLEQLCCEYVQTFNDKEIVLGHGCIDSPVAIIGEAP + GKDEVKLGKPFVGAAGKNLNEFIEVLEISRDDLYITNAIKYRLGRLNPKTRRIVNRPA + TIKDIKENQIWLHREIHILKPQIIVTLGNVPLKAVTDNFRLSIGDMHGVLHECNLAGK + VYKIFPLYHPASIIYNRTLKDVYHEDMMVLKKEIKKLSTVNVFNPNKRVFHISLTTKI + " + gene complement(2917084..2917656) + /locus_tag="Ccel_2416" + CDS complement(2917084..2917656) + /locus_tag="Ccel_2416" + /inference="protein motif:TFAM:TIGR00758" + /note="TIGRFAM: phage SPO1 DNA polymerase-related protein; + PFAM: Uracil-DNA glycosylase superfamily; + KEGG: cth:Cthe_3108 phage SPO1 DNA polymerase-related + protein" + /codon_start=1 + /transl_table=11 + /product="phage SPO1 DNA polymerase-related protein" + /protein_id="ACL76746.1" + /db_xref="InterPro:IPR005122" + /db_xref="InterPro:IPR005273" + /translation="MFNWEQLNSTCNNCRNCDLAGTRTNIVIGRGNPNAPIMFIGEGP + GEQEDLRGLPFVGPAGQLLDTLLEALKFKPDEYYIANVVKCRPPNNRVPNEEEAEKCL + PYLRNQVALIRPRIIVCLGSTAAKYIVARDAKITQIRGHWIQRKKFWIMPTFHPAALL + RDQSKKELLFKDIKEVKKKINQLVSEEYGG" + gene 2917915..2919891 + /locus_tag="Ccel_2417" + CDS 2917915..2919891 + /locus_tag="Ccel_2417" + /inference="protein motif:PFAM:PF02366" + /note="PFAM: glycosyl transferase family 39; + KEGG: cth:Cthe_3095 glycosyl transferase family protein" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 39" + /protein_id="ACL76747.1" + /db_xref="InterPro:IPR003342" + /translation="METYLKNILNFFSHVKMPGFATMMSSVIILFFIGIGIWGFSRIR + NIQKGNLIITEYGLLDNEKEKKPLFKLVKKDYIIMLVMTLLYAIPAIYNLGGFKIPET + PWAPAEKNDGFIVDLGKEVDVTKVMIYQGYNEEKYDGVKFNIKFLNSNDTYSDSEALE + KSGFFSWKVSTKEFKTSKIKIIADKPGSAINELAIFEKGSTKPFKVMSITSVDPLIKS + SIKSPDGKPYKLSNLIDEQDRVDLYTLSATNTYFDEVFYPRTALDFINKIHPFERTHP + PLGKYFVMIGMLIFGVNPFGWRIIGTLFGVAMIPLMYLFGYKIFKKRFLAFCTAFLMM + FDFMHFVQTRISTIDVYVTFFVILMYYYIYDYFVKKSYKAGLKRSLVPLFLCGLAFGI + GIATKWIAMYAAVGIFLILVIAKLDEIVYYTAYKKSGLSSDLFSKFWSKYFFKTALFC + ILFFILIPGIIYFASYTSIMQVPDNGIKEFFNNQSFMYSFHNDLNAKHSYSSQWFEWP + IMTKPIWFYGSKALAAEKLTSSIICMGNPLIWWISIPSLITGIIVAIKRKDKYMLVPI + FGALFQYIPWMVVRRMAFIYHYFSVIPFIIIIIVYLIKVFMELGGNTKKIVCTYLVLT + AIVFIMYYPILSGMIVPRWYASLLQLFPGWSFRY" + gene complement(2920073..2920157) + /locus_tag="Ccel_R0060" + /note="tRNA-Tyr2" + tRNA complement(2920073..2920157) + /locus_tag="Ccel_R0060" + /product="tRNA-Tyr" + gene complement(2920161..2920236) + /locus_tag="Ccel_R0061" + /note="tRNA-Thr3" + tRNA complement(2920161..2920236) + /locus_tag="Ccel_R0061" + /product="tRNA-Thr" + gene complement(2920444..2920520) + /locus_tag="Ccel_R0062" + /note="tRNA-Asp2" + tRNA complement(2920444..2920520) + /locus_tag="Ccel_R0062" + /product="tRNA-Asp" + gene complement(2920540..2920614) + /locus_tag="Ccel_R0063" + /note="tRNA-Glu3" + tRNA complement(2920540..2920614) + /locus_tag="Ccel_R0063" + /product="tRNA-Glu" + gene 2920878..2921306 + /locus_tag="Ccel_2418" + CDS 2920878..2921306 + /locus_tag="Ccel_2418" + /inference="similar to AA sequence:KEGG:CD0277" + /note="KEGG: cdf:CD0277 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76748.1" + /translation="MWSELYNSNNKPTFENVNDFVNSTLWDELCLFVESTYSILPKLE + FSKCSMQKGWNIKYKKSSKSLCTLYPMDGYFIVLIVIGKKELTEADMVIPTCSPYTQN + LFLETPSSYCGRWLMIEVKEKSTLEDVKKLIQLRVKPLNK" + gene complement(2921394..2921469) + /locus_tag="Ccel_R0064" + /note="tRNA-Lys3" + tRNA complement(2921394..2921469) + /locus_tag="Ccel_R0064" + /product="tRNA-Lys" + gene complement(2921621..2922895) + /locus_tag="Ccel_2419" + CDS complement(2921621..2922895) + /locus_tag="Ccel_2419" + /inference="protein motif:PFAM:PF00709" + /note="PFAM: adenylosuccinate synthetase; + KEGG: cth:Cthe_3093 adenylosuccinate synthetase" + /codon_start=1 + /transl_table=11 + /product="adenylosuccinate synthetase" + /protein_id="ACL76749.1" + /db_xref="InterPro:IPR001114" + /translation="MAVRVVVGTQWGDEGKGKYIDMLAEQSDIIVRFSGGNNAGHTIV + ANGVKYALHLIPSGILHTDKTCIIGNGVVVDPAVLLQEMKGLNERGVTTDHLLISDRA + HLVMPYHKELDVLQEKFRGSDSIGTTKRGIGPCYVDKIERSGIRMCDLIDENEFIRKV + KANLKLKNLIIERVYGGEPFEAEPIIKEYLGYAEQLKKYITDTTCILADAVDEGKNIL + FEGAQANFLDVDFGTYPYVTSSNPIAGGVCTGSGLGPVYVDEVYGVLKAYTSRVGAGP + FPTEQNNEIGDTIRELGLEYGTTTGRPRRCGWLDTVMIKYTAKINSLTALAINHVDTI + GKLKEIKLCVGYKKDGQIIRTFPASLNELAKCEPVYEVFEPWNEDISNVKLFSDLPQN + AQKYLNRIEELVGVKIGLIGVGKDREQIIKVF" + gene complement(2923126..2923329) + /locus_tag="Ccel_2420" + CDS complement(2923126..2923329) + /locus_tag="Ccel_2420" + /inference="protein motif:PFAM:PF08984" + /note="PFAM: Domain of unknown function DUF1858; + KEGG: cth:Cthe_3092 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Domain of unknown function DUF1858" + /protein_id="ACL76750.1" + /db_xref="InterPro:IPR015077" + /translation="MAKVTKDMIISDVLNMDKGTVPIFLESGMHCLGCPSSSGESIED + ACAIHGIDADQLIDNLNKYLENK" + gene complement(2923432..2923989) + /locus_tag="Ccel_2421" + CDS complement(2923432..2923989) + /locus_tag="Ccel_2421" + /inference="protein motif:TFAM:TIGR00723" + /note="TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate + subfamily, beta subunit; + PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; + KEGG: cth:Cthe_3091 tartrate/fumarate subfamily Fe-S type + hydro-lyase beta subunit" + /codon_start=1 + /transl_table=11 + /product="hydro-lyase, Fe-S type, tartrate/fumarate + subfamily, beta subunit" + /protein_id="ACL76751.1" + /db_xref="InterPro:IPR004647" + /translation="MHHILTAPFDRDKARLLKAGDTVSLSGTIYTARDAAHKKMIELL + QENRELPFDMSNQTIYYVGPCPSREGEIIGSAGPTSSYRMDAYAPTLIRLGETAMIGK + GLRDQNVINAMKEYGAVYLGAIGGAGALMAECIKRQEIIAFPELGAEAVRHLEIINFP + LIVVIDSHGNNLYESGRKQYRKIKL" + gene complement(2924003..2924845) + /locus_tag="Ccel_2422" + CDS complement(2924003..2924845) + /locus_tag="Ccel_2422" + /inference="protein motif:TFAM:TIGR00722" + /note="TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate + subfamily, alpha subunit; + PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha + region; + KEGG: cth:Cthe_3090 fumarate hydratase" + /codon_start=1 + /transl_table=11 + /product="hydro-lyase, Fe-S type, tartrate/fumarate + subfamily, alpha subunit" + /protein_id="ACL76752.1" + /db_xref="InterPro:IPR004646" + /db_xref="InterPro:IPR013838" + /translation="MREINVTTIIEEVSRLCIQANYFLNNDIKTAMKKGMECEESEIG + KEILDKLLINANLAADKKVAICQDTGMAVLFVTIGQEVHIAGGGLTEAINEGVRRGYK + EGFLRKSVVGDPIERVNTGDNTPAVIHYDIVEGDILKIELAPKGFGSENMSALKMLKP + SDGIEGVKNFILETVDKAGPNPCPPIVVGVGVGGTMEKASIMAKRALFRPINVRSNIE + YVRNLENEMLDKINHLGIGPAGLGGNTTALAVNVETYPTHIAGLPVAVNISCHVTRHA + DVIL" + gene 2925069..2925452 + /locus_tag="Ccel_2423" + CDS 2925069..2925452 + /locus_tag="Ccel_2423" + /inference="protein motif:PFAM:PF00582" + /note="PFAM: UspA domain protein; + KEGG: cth:Cthe_3089 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="UspA domain protein" + /protein_id="ACL76753.1" + /db_xref="InterPro:IPR006016" + /translation="MKSTASNILVCVTQQKTCERLIKKALEFSNDEDSLFIIHVAKND + WSFLDNEKEGEALEYLFGIAKSVGANLTVLRSDDIVDTIVSYSQDNNIDLLVMGDSKG + DHSENYFYKALKSRLDKANIHVVPN" + gene 2925580..2925855 + /locus_tag="Ccel_2424" + CDS 2925580..2925855 + /locus_tag="Ccel_2424" + /inference="protein motif:PFAM:PF00216" + /note="PFAM: histone family protein DNA-binding protein; + KEGG: tpd:Teth39_0249 histone family protein DNA-binding + protein" + /codon_start=1 + /transl_table=11 + /product="histone family protein DNA-binding protein" + /protein_id="ACL76754.1" + /db_xref="InterPro:IPR000119" + /translation="MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTL + VGFGTFEVRERAARKGRNPQTKEEITIPASKAPVFKAGKGLKDNVNV" + gene complement(2925925..2926680) + /locus_tag="Ccel_2425" + CDS complement(2925925..2926680) + /locus_tag="Ccel_2425" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; + KEGG: cth:Cthe_3087 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="response regulator receiver protein" + /protein_id="ACL76755.1" + /db_xref="InterPro:IPR001789" + /translation="MSKIRILIADDNLLAAQTLRDNLNEYDDFEVTNIAQDGFEAIEL + IEKDSPDVVLLDIIMPKLDGIGVLEYAGTLTKESRPVFIVFSAISQEIYISRAMNLGA + NYYIIKPFDESVIATRVRQLYSDSERAQIGKSQYTYKIRNNYKQKNQSDNELKLLATK + YMRECGLKAHMTGYSYIRDIITAAFDYYCKTGSLPKGVYRTIAEKNGVPVQKVERAIR + NCIEKGIDGSEEGKKPTNSQVLCQIIDKIRKNN" + gene complement(2926715..2927218) + /locus_tag="Ccel_2426" + CDS complement(2926715..2927218) + /locus_tag="Ccel_2426" + /inference="protein motif:PFAM:PF01202" + /note="PFAM: shikimate kinase; + KEGG: cth:Cthe_0731 shikimate kinase" + /codon_start=1 + /transl_table=11 + /product="shikimate kinase" + /protein_id="ACL76756.1" + /db_xref="InterPro:IPR000623" + /translation="MTNPKKNIVLIGMPGSGKTTVGKILSDRLGYTFVDTDQLICELT + DKTPRQLVEEDGLENFMKIQDEAVLSINNNNCIISTGGGLVHSEISMKYLKSIGIMIY + LDTKYDIIRERMDSSRKLVRTTGTLLELYNNRVPLYKKYADTVINCDSVDPDVVSETI + LGSISSK" + gene complement(2927215..2928393) + /locus_tag="Ccel_2427" + CDS complement(2927215..2928393) + /locus_tag="Ccel_2427" + /inference="protein motif:PFAM:PF01264" + /note="PFAM: chorismate synthase; + KEGG: cth:Cthe_0732 chorismate synthase" + /codon_start=1 + /transl_table=11 + /product="chorismate synthase" + /protein_id="ACL76757.1" + /db_xref="InterPro:IPR000453" + /translation="MLGNTFGRLFRVTTCGESYSGAFRKNSDIPPELWGGLAVIVDGV + PAGLKVTSQIIQEELDKRKPGQSRLHTPRTEADKVYIFSGVMQDDRTTGAPVCMLIPS + SDIGDYHIEQHKGNKDLLRPGQAAYTYYKKYGEHSDYLGAGRASARETVARVAGGAIA + KIILDSMGIDVIAFTIESHGIKAGPFSYETAKQNYRANDINCPDLDIAKHMIDDLLQV + KKEGDSCGGAIEIIAKGVPAGLGEPVFDKLSATIAHGIMSIGGVKGIEIGDGFGVTSK + KGSECNDTPYYDEETRRIRFKTNRAGGMLGGISNGEEIRIRVAVKPTPTILKDQLTVN + VSTLEPVTHKFASRSDPSLVPRIYPICEAMVRMALVDSILMASGSRSITDMDNRWDKL + " + gene complement(2928437..2929705) + /locus_tag="Ccel_2428" + CDS complement(2928437..2929705) + /locus_tag="Ccel_2428" + /inference="protein motif:TFAM:TIGR01356" + /note="TIGRFAM: 3-phosphoshikimate + 1-carboxyvinyltransferase; + PFAM: EPSP synthase (3-phosphoshikimate + 1-carboxyvinyltransferase); + KEGG: cth:Cthe_3086 3-phosphoshikimate + 1-carboxyvinyltransferase" + /codon_start=1 + /transl_table=11 + /product="3-phosphoshikimate 1-carboxyvinyltransferase" + /protein_id="ACL76758.1" + /db_xref="InterPro:IPR001986" + /db_xref="InterPro:IPR006264" + /translation="MFLKVQKSDISGSISIPGSKSHTIRSLFLAGLAKGTSVIRNPLL + STDAVSGVNVCRAFGSTYDLNNESYVVNGMGACPQVPENVIDVGNSGTSLRLGLMTAA + LVDGYTVFTGDYQIRKRQIGPLVEAINNLGGKAFTTRGNESAPVVIKGRATGGYTKLD + CVTSQYLSSILLNTPLLEKDTHVEITRLNEIPYVEITLWWLDKLGIKYSHNSMKEFFI + PGGQQYRPFECTIPGDFSSATFFMVQAAISERELVLTNLDMSDPQGDKAVLDILADMG + AEIKYDHNNIKIKGKSLKGREIDMNSIPDALPAMAVAACFAKGETRLVNVPQARLKET + DRISVMCSELTKMGADISELPDGLVIRESKLHGAAVKGYDDHRIVMSLAIAGLNCSGE + TVIDTAEAMNVTYPGFVESVKSCGGKIELI" + gene complement(2929840..2930994) + /locus_tag="Ccel_2429" + CDS complement(2929840..2930994) + /locus_tag="Ccel_2429" + /inference="protein motif:PFAM:PF01170" + /note="PFAM: putative RNA methylase; THUMP domain protein; + KEGG: hmo:HM1_0388 THUMP domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="putative RNA methylase" + /protein_id="ACL76759.1" + /db_xref="InterPro:IPR000241" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR002296" + /db_xref="InterPro:IPR004114" + /translation="MSKLQLIATSAFGIEAITARELKKLGYFEQKVENGKVTFSGDES + AVCRTNLWLRTADRVLLKMGEFKALSFEELFEQTKALPWDEIIPIDAEFPVEGKSIDS + KLFSVPDCQAIVKKAVVEKLKQKYKCEWFEENGPRYRIEVALLKDIVTLTIDTSGSGL + HKRGYRRLVGGAPLKETLACAMILVSHWNKDRVLLDPFCGSGTIPIEAAMIGKNIAPG + LGREFDAEKWPFIPQNLWDDARDEAYDLMVEDQELRIHGSDIDEDAMSLARYHAKKAG + VEDAIHLQRLAMADISSRYKYGIIICNPPYGERLGEKEAVENLYREMGKVFKKLDTWS + YYVITSNMEFEKLFGKRADKKRKLYNGRLLCNYYQFFGPPPPKQINNLQQ" + gene 2931515..2932852 + /locus_tag="Ccel_2430" + CDS 2931515..2932852 + /locus_tag="Ccel_2430" + /inference="protein motif:PFAM:PF00208" + /note="PFAM: Glu/Leu/Phe/Val dehydrogenase; + Glu/Leu/Phe/Val dehydrogenase dimerisation region; + KEGG: cth:Cthe_0374 glutamate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Glu/Leu/Phe/Val dehydrogenase" + /protein_id="ACL76760.1" + /db_xref="InterPro:IPR006095" + /db_xref="InterPro:IPR006096" + /db_xref="InterPro:IPR006097" + /db_xref="InterPro:IPR010916" + /translation="MKILQNVMDEVIKRNPGEPEFHQAVKEVLESLEVVAEKNPEWVE + AGIFKRIVEPERQIIFRVPWVDDNGKVHVNRGFRIQFNSAIGPYKGGLRLHPSVNVSI + LKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSNLEIMRFCQSFMTELSKHIGADTD + VPAGDIGTGAREIGYMYGQYKRLRNEYTGVLTGKGLTWGGSLARTQATGYGLCYFMNE + ALKAKGKSFKGATVVVSGSGNVAIYATEKVYQLGGKVVALSDSNGYVYDPDGIKLDTV + KQIKEVERKRISEYVKIHKNATYTEGCSGIWGVKCDIALPSATQNEIDEASAKLLVAN + GCYAVGEGANMPSTPGAVEVYLKNNIIYGPAKAANAGGVATSALEMCQNSARYSWTFE + EVDSKLKDIMVNIYKNVSTAAKEYGMEDNLVAGANIAGFLKVANAMYAHGVAY" + gene complement(2932924..2933595) + /locus_tag="Ccel_2431" + CDS complement(2932924..2933595) + /locus_tag="Ccel_2431" + /inference="protein motif:PFAM:PF00849" + /note="PFAM: pseudouridine synthase; + KEGG: cth:Cthe_0278 ribosomal large subunit pseudouridine + synthase D" + /codon_start=1 + /transl_table=11 + /product="pseudouridine synthase" + /protein_id="ACL76761.1" + /db_xref="InterPro:IPR006145" + /translation="MIPKIVYEDNHLLVVEKPVNIPVQADNSKDIDMLTLLKQYLKEK + YNKPGEVYLGLVHRLDRPVGGVMVFAKTSKCASRLSDQIRTRTFKKTYLAIVRGVPQK + QKDELRNFLLKDSSENMVHVVKEGTRDAKEAILDYEVLKSNGELSLLQIQLHTGRPHQ + IRVQLSHSGYPLYGDQRYGIYVNKPGQQIALWASSLTLEHPTKKEEMTFGCGTPEKKP + WTELV" + gene complement(2933592..2934455) + /locus_tag="Ccel_2432" + CDS complement(2933592..2934455) + /locus_tag="Ccel_2432" + /inference="similar to AA sequence:KEGG:Cthe_0277" + /note="KEGG: cth:Cthe_0277 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76762.1" + /translation="MLLADEWKEYELIETGDGEKLERWGNIILRRPDPQIIWPIKDKK + VWDRADAHYHRSQSGGGQWEFKKKVPKRWTISFNDLKFYIEPTGFKHTGLFPEQAVNW + KWMINSIQKANRPIRVLNLFAYTGGATVATAYAGAEVCHVDAAKGMVNWAKENLALSG + LADRPVRFITDDCMKFVQREIRRGKKYDGIIMDPPSYGRGPGGEIWKIEDSLYGFVEQ + CMGLLSDKPLFFLVNSYTTGFSPTVLSNILKKTIGRRFKGTYSSGEVGIPVSNSGLVL + PCGIYGRWENR" + gene complement(2934551..2935210) + /locus_tag="Ccel_2433" + CDS complement(2934551..2935210) + /locus_tag="Ccel_2433" + /inference="similar to AA sequence:KEGG:TTE2521" + /note="KEGG: tte:TTE2521 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76763.1" + /translation="MFIPEIEGNLRKHMVKIPDIINQASGINIFGKNIKSLLFSTDVA + LIKNCNAHAVIAVYPFTPQPVITHAIIAASDIPVFCGVGGGTTTGKRIINIAMDAEFQ + GAIGVVVNAPTPNEIIRQLNMKIDIPIVITVATENTDIQSRLNAGGSILNVSCAGKTP + SVVREIRQRFPKVPIIATGGPTIESIRQTIEAGANTITYTPPTSAELFKNVMNKYRAE + L" + gene 2935398..2936261 + /locus_tag="Ccel_2434" + CDS 2935398..2936261 + /locus_tag="Ccel_2434" + /inference="protein motif:TFAM:TIGR01230" + /note="TIGRFAM: agmatinase; + PFAM: Arginase/agmatinase/formiminoglutamase; + KEGG: amt:Amet_2650 putative agmatinase" + /codon_start=1 + /transl_table=11 + /product="agmatinase" + /protein_id="ACL76764.1" + /db_xref="InterPro:IPR005925" + /db_xref="InterPro:IPR006035" + /translation="MINKNTLPTNFLGCESRFEDSDIVIFGAPYDGTTTFRPGTRFAP + SAMRIDSIGLETYSPYFDADISDYKIHDYGDLDLPFGSPNKALHMISETSGFIFKQGK + KPLMIGGEHLVTLPSIEQAAKLYPDLRIIHFDAHTDLREEYIGEPLSHSTVIRRAWDI + LGDNRIYQFGIRSGTREEFYWARDGHTNLCLHNFETLANAVSQISNAPVYLTIDLDVL + DPSIFSGTGTPEAGGVTFLELINALKTVSALNIIGADIVELSPHYDHSGASTAVACKV + LREVILAMQNF" + gene 2936291..2936584 + /locus_tag="Ccel_2435" + CDS 2936291..2936584 + /locus_tag="Ccel_2435" + /inference="protein motif:TFAM:TIGR00135" + /note="TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C + subunit; + PFAM: Glu-tRNAGln amidotransferase C subunit; + KEGG: pca:Pcar_2167 glutamyl-tRNA (gln) amidotransferase, + C subunit, GatC-like" + /codon_start=1 + /transl_table=11 + /product="glutamyl-tRNA(Gln) amidotransferase, C subunit" + /protein_id="ACL76765.1" + /db_xref="InterPro:IPR003837" + /translation="MTNSESNDYIKYMAELAKLSLDDSEIQSLAEDMRDIIGLMDTIK + NIDTEQIDATEHISRVTNIMREDHPGDSLDAKQILSNSKKTMENCFAIPKMIE" + gene 2936603..2938063 + /locus_tag="Ccel_2436" + CDS 2936603..2938063 + /locus_tag="Ccel_2436" + /inference="protein motif:TFAM:TIGR00132" + /note="TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A + subunit; + PFAM: Amidase; + KEGG: tex:Teth514_0540 glutamyl-tRNA(Gln) + amidotransferase, A subunit" + /codon_start=1 + /transl_table=11 + /product="glutamyl-tRNA(Gln) amidotransferase, A subunit" + /protein_id="ACL76766.1" + /db_xref="InterPro:IPR000120" + /db_xref="InterPro:IPR004412" + /translation="MDITRLTIKEARKLLDNREISALELTRTYLDRINTLDGKVESYL + SVTEDMALKQAEQAQNLIDYGKASLLTGIPLSIKDNICIEGTKTTCASKMLEDFVSPY + TATAVDKLFADNAVILGKTNLDEFAMGGSTENSAFKITKNPFDLTRVPGGSSGGSAAC + VSASLALGSLGSDTGGSVRQPASFCGVVGMKPTYGLVSRYGLVAFASSFDQIGPIAKT + VEDCAIILDSICGNDPKDATSLKYENDSSYSSSVSGDIKGFKFGLPKEYLTEGLNAEV + KESLYKSIDKLESMGAKIEEFSMPVLKHAVPAYYLMSSAEASSNLSRYDGVKYGYRAD + NCKSFNELIGKSRAEGFGKEVKRRILLGTYSLASGYYDAYYKKALKLRTLISNGFNEA + FTKYDVVLHPTTPETAFKIGQNSNSPLAMYLADIYTVAVNIAGLPSISLPCGYDSNGL + PIGLSFTGKPLGEKDIFRAAASFEAEFSDKFRVPAI" + gene 2938082..2939539 + /locus_tag="Ccel_2437" + CDS 2938082..2939539 + /locus_tag="Ccel_2437" + /inference="protein motif:TFAM:TIGR00133" + /note="TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B + subunit; + PFAM: GatB/Yqey domain protein; GatB region; GatB central + domain protein; + KEGG: csc:Csac_0910 glutamyl-tRNA(Gln) amidotransferase, B + subunit" + /codon_start=1 + /transl_table=11 + /product="glutamyl-tRNA(Gln) amidotransferase, B subunit" + /protein_id="ACL76767.1" + /db_xref="InterPro:IPR003789" + /db_xref="InterPro:IPR004413" + /db_xref="InterPro:IPR006075" + /db_xref="InterPro:IPR006107" + /translation="MKYIPSIGLEIHSELSTKSKIFCDCPVSFGGEPNTRCCPVCTGM + PGTLPVLNKQAVEYTVIAGLALNCKINEFSKMDRKNYFYPDLPKAYQISQFDLPICKD + GGLTINTPDGEKFIRIERIHLEEDAGKLLHDNYDRYSLADYNRCGVPLIEIVTKPDLS + SAEEAKEFVEKVRLMLLYSGVSDCRMEEGSLRADVNVSIRPIGTDELGTRTEMKNINS + IKAIARAIDYEINRQSELLNEGKKIIQETRRWDDSKGESKALRSKEDAHDYRYFPEPD + IVPVTFKSEDIEKLRKSLPELPDKRFERYTKTYSVNQADANLLLTSVSLSDFFEAAAA + ESGNPKQAANFIVVEVLRRLKDSNMSPEDIPFDGKLLARLLRLMDSEKITPNNAKKVL + SEMFETGKEPDTIVDERGYKIINDTAEVESMVKEIISSNEKAVGEYLEGKEKTFGYLM + GQCSRALAGRGNPKVVQEILRSELNKLRDIDINVH" + gene 2939662..2947150 + /locus_tag="Ccel_2438" + /pseudo + gene complement(2941345..2941518) + /locus_tag="Ccel_2439" + CDS complement(2941345..2941518) + /locus_tag="Ccel_2439" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76768.1" + /translation="MENRKKLLIIRIILSVLLITTLILKRVHFISDNAYSIIIILTAV + VIIFGPSKFIKKK" + gene complement(2941950..2943452) + /locus_tag="Ccel_2440" + CDS complement(2941950..2943452) + /locus_tag="Ccel_2440" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: cdf:CD1905 site-specific recombinases" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL76769.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MIAIYTRQSVDKKDSISIESQIGFCMKEISSENYKIYTDKGYSG + SNINRPAFEEMIRDIKIGIIKKVVVYKLDRISRSLLDFAHIIECFDKYKVEFISQTEK + FDTSTSMGRAMLSIVMVFAQLERETIQQRVKDNYYQRGKAGLYLGGIAPYGYNKVQTF + LNGKKTYMFGVDKEKCEIVRHIYSMYAEKSKSLGVIARYLNIKKLKTNKGYNWTPTTV + GRLIRNPVFVKANADVYVYLKNKGAIINSDINDFIGENGCYVYGERKTKTTSKFTDLT + NNFVTIAPHKGIISSELWLKCQYRADENRAIKNSGKGKNSWLSGLMKCGYCGYAATVV + NSRGLIYINCGGRKNGFCFERKRVIYLRDIEKIAEVKLLEKIKSLKNEFYVEISSNSK + EVNDLKIKLAKVEENINKLIDRMLTLNETAGSYVNERINELDNKKKILKNKINKISIE + KSSQRIKREDLSEYLKNWDNYNLEQKKSVAKALIEKVVITDEEIEIVFKI" + gene complement(2943473..2943628) + /locus_tag="Ccel_2441" + CDS complement(2943473..2943628) + /locus_tag="Ccel_2441" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76770.1" + /translation="MRVLIITEKEEVLNGFKVITKRPDLTENEYKMAEYTIVNNIINS + LMEHSET" + gene complement(2943945..2946557) + /locus_tag="Ccel_2442" + CDS complement(2943945..2946557) + /locus_tag="Ccel_2442" + /inference="protein motif:PFAM:PF00404" + /note="PFAM: cellulosome protein dockerin type I; + KEGG: gvi:gll3705 unknown protein" + /codon_start=1 + /transl_table=11 + /product="cellulosome protein dockerin type I" + /protein_id="ACL76771.1" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR003961" + /translation="MKKRLKKASIVLALAVLVQCMMFNLGFETIQAGAVGIINKDYWN + YRNIGNANEYSTADVFTDKVIVAGSGSGVFNTEDSFTYSYIPVNGDCTIQARIVSESS + TDALAKAGLMIRESLDTDSKNAFIALSKSNQIQYQYRAMTGGATASDASISGNAPVYL + KLTRVGDSFEAFMSTDGTNWTKTGNTQTIAMGSKVYLGFASTSTDPNKLCTARFENID + IEYTDNTPPLAPTNLRVVYESQPSCQLAWDEASDDSGAVLYEIYSNGSLKRITHDCKS + ICPNIDFKNTVDLCVVAVDAKGNRSPENSTIKIVSQNALISSADVTNIRLNSIGLERM + NTKRQQQNKPLVEADPVQVGEEIMTDSTPNNVIVQGNSVDLNTIYAESLPSSVDNSTL + QCFPRIDNQIYGDCVIWSTGYYTMTHMVGLAKVNAGGQWDAKNDTTGSKVFSPKFAFS + VGNAPSSTGLMTGVYKTYLDSGCATLADAPYINDGVDGFKLSTDLDSWENAINYRMDK + YGYIDANENSLERIKQLLNNGYVMSFDTGTYNFMQYPNVVLDNPDPAVNDDYAVGKHF + FYMVDGVNSGHQMTLVGYDDNIWWGDVNGDGIPQPEEKGLFKIANSWGSNYGYDGFVY + VNYDSIYRNSQFSQFNSSTRMPIFKDVLEWMTPRRDYVPQLIAEFTVSHAKADQLRIA + VGYSDMDKNMPEAYFFPGSLNYLSHTEPFDFNVDGTACDGNFAVDMTDFITKFNLDKS + KRYKWYLMVGDNEEDGSPVTLKSFRVHDKINNKYSTYRGPELQNDGDNSYVSVDYSWA + LVGDVDGNGIIDDADQLLIVDYSLGYINDFPVEDDMWAADVNGDGIINMIDSAFIRKY + ILGQINIFPKQQLN" + gene complement(2947209..2948582) + /locus_tag="Ccel_2443" + CDS complement(2947209..2948582) + /locus_tag="Ccel_2443" + /inference="protein motif:PFAM:PF07690" + /note="PFAM: major facilitator superfamily MFS_1; + KEGG: mem:Memar_2034 major facilitator transporter" + /codon_start=1 + /transl_table=11 + /product="major facilitator superfamily MFS_1" + /protein_id="ACL76772.1" + /db_xref="InterPro:IPR011701" + /translation="MSTCLGKLDFLKKTEVYIAVNLLTKFKEIYFNKESLSEEDMRVS + RNLSIFEGCTARSILTLTSGAFLVGFAKYLGASDEKAGIIAAIPVLAGIVTVFSPIVI + EKLESRKLLTCMLCFIGRLMMGLMILIPFISPYKTVRVQLLIWVFFIANLILAFTTPY + AQTWLLNITPKRIRGDYYGKRESIVLGTVTVVTLIMGQVLDKFERMGQQFTGFIVLYA + FVIVTAIINTVLFSKIKEPVNPVLKPGVSFKNLFSLPVKNKNFMKITFITLFWNLGYQ + IAFPFTSVYMVSILHLRYGLVTVMAVLASITSVVSVRFWGKIADKKSWLYIMKLMIVL + QILSFLTWFFINPDTVYILMPVAHILGGAAISGVNISVNNLQYSYSPADNKTVYMGFS + SAVNGIIGFLGTLAGSLFIKVMDTRGVSLGGFSIGNMQMLFLAAVIVLIVSMFGISKF + KFSNSNI" + gene 2948836..2950026 + /locus_tag="Ccel_2444" + CDS 2948836..2950026 + /locus_tag="Ccel_2444" + /inference="protein motif:PFAM:PF00999" + /note="PFAM: sodium/hydrogen exchanger; + KEGG: ckl:CKL_0508 NapA" + /codon_start=1 + /transl_table=11 + /product="sodium/hydrogen exchanger" + /protein_id="ACL76773.1" + /db_xref="InterPro:IPR001991" + /db_xref="InterPro:IPR006153" + /translation="MEKVLIDIALILIFTKIGGLVSRKFKMPEVLGALIAGVILGPAV + LKLVDYTEHIRLLSDLGVIMLMFLAGLETNVDELKKAGKTSFVIAIGGVIVPLILGTA + AAYLFFTNFWENLFVGVILTATSVSISVETLNELGKLNTKAGVNILGAAVIDDVLGLI + LISIVLAVSKTVGSGASGSDAVLSLVLTFVKIIVFCVIAVIMIAIVPKFINKIKADGN + HKRDLLTYAIAMALILACVSELLGIAAITGAYICGLTLSQFIHRDYIEKNVKAISSGF + LSLIFFASVGIAADIKGLNFEVVLITLVMFAIAVAGKLFGCGGAAKLFKMSKQECIQI + GVGMISRGEVAIITANIGMQSKIISEEIYIPTLIVVILTTVITPALLKVVFSSKHGLN + DSAA" + gene complement(2950102..2950797) + /locus_tag="Ccel_2445" + CDS complement(2950102..2950797) + /locus_tag="Ccel_2445" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tex:Teth514_2383 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76774.1" + /translation="MKKIRIVIIAVLLVGIAVFSSILMASGEPSPTQKEKVTKFGDIT + KKHLASKDNKVAFTINGLEVTVDQVNKRKELEQSLGNLDITDSENVKAIAVKILLLDK + AKKQGIKISDEEARKASLEEKEIINSGNIGKENLEAFLAYKEALGLSEDEYWNDFHAQ + ELKEYLTINALYEKFTKDAINDQKILVQNVKPAELTKAKKKYFEDYKKNLYNNAKIEF + NDSKLKAEVESGN" + gene 2951279..2951596 + /locus_tag="Ccel_2446" + CDS 2951279..2951596 + /locus_tag="Ccel_2446" + /inference="protein motif:PFAM:PF00893" + /note="PFAM: small multidrug resistance protein; + KEGG: cbe:Cbei_3445 small multidrug resistance protein" + /codon_start=1 + /transl_table=11 + /product="small multidrug resistance protein" + /protein_id="ACL76775.1" + /db_xref="InterPro:IPR000390" + /translation="MKWIMLIIAGLLETGWAVGLKYSYGFTKPIPSIFTIAGMIASFF + FLSLALKNLPLGTAYAIWTGIGTVGTVILGIILFKEPIDIIRLICIGFIVVGIVGLKV + VSH" + gene complement(2951670..2955083) + /locus_tag="Ccel_2447" + CDS complement(2951670..2955083) + /locus_tag="Ccel_2447" + /inference="protein motif:PFAM:PF05193" + /note="PFAM: peptidase M16 domain protein; Peptidase M16C + associated domain protein; + KEGG: ckl:CKL_0709 peptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase M16 domain protein" + /protein_id="ACL76776.1" + /db_xref="InterPro:IPR007863" + /db_xref="InterPro:IPR011765" + /db_xref="InterPro:IPR013578" + /translation="MKKVVSYMMTFVLILSLCLNAAPSVNAAQTELKALPEAGQVVSG + FKVMEIGNMDIIDSKTVLFEHEKTGAKFIFIQNKDTNRTFDISFKTPAFNDTGVNHIL + EHITVSGSQKYPMKNVLFTILNQTYSTFINAFTAQNFTTYPVSSLSEDQLLKLAEVYL + DCVYHPSVYNDKNIFKREAWRYEMTDSKADLNISGTVYNEMKGALGNITTAAAYNDLK + TLFPNSTQSTISGGDPEKVKDLKYEDVIKTHQTYYHPSNSLMVLYGNVDYEKFLKMID + TDYLSKYEKKDIKIEKLKLEPFKKTVEKTYKYPVAAGTNTKNASQIDYCFALESISNE + ELLGVAILNELIGSNTSALKQEFRDKKLGGDIAVTFNTGLSIPVLTFSAQNTDESKKA + DFKALVDKYLSNVVKSGFKTDDVDSVIAGELRGLSSITETPNLGVNLSTQMGSFWANL + GSPDFYNDMLKNIKSMAAKSGKKYFEGLTERFLINNKNTALVTTVPEAGLAEKQAAEQ + KKYLSDLKASMSQQQIDAIVKETKTYNEWNSREDNKDVVKSIQAVKISDLPEEVKNYN + VKEVKSDGVRLISAEANVGEIESTRLYLDTSAVPADKLHYLKLYTDLLGNLDTKSHTK + DELGNLKTRYISGVAFNLSALTDKNYKNYSPVLSASWTGIMGDYDKQIEVVKDILLNT + QFNKNTDILNIIKSRISELKMQFTNSPISIQAMRSRSYFSEVYNYLNYSTGLDYYNFL + TELEKEISNNPQGVLKELNNIKTLVTNKKNLIITFAGNKKSISRFESTIKNLTDGMSS + KDIVKQDYSKLPKPVKREGISVDGTIQYNMLYSTYEKMGTVFSGKYIPIGSVINENYI + TPKIRFGYGAYDNIVNFGEEGFMLASFRDPNVKETFEVYNGLPEFVKNVDLTQEQLDS + YILKSFSDYTVSAGELSGAGTALSYYLMDFKSEDILKILKEIKSVTVQDVKDTASMLE + NMLKNGAYSTAGSKEKLTENKELYDGIVSVGQEEDSKSDSSITRGEFFKLVLAGAPEP + LEIAKQQGLITADKKGNYHENRKLTREELAVFVYKIATLSGVQLPTANPEIADINSSA + TWSRNAIKALVGFDVIKLDDKGNFNPKGEVTDAYVTDLFNNLNQKLSGK" + gene 2955394..2956926 + /locus_tag="Ccel_2448" + CDS 2955394..2956926 + /locus_tag="Ccel_2448" + /inference="protein motif:PFAM:PF01266" + /note="PFAM: Rieske [2Fe-2S] domain protein; FAD dependent + oxidoreductase; + KEGG: nth:Nther_0727 FAD dependent oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="FAD dependent oxidoreductase" + /protein_id="ACL76777.1" + /db_xref="InterPro:IPR002016" + /db_xref="InterPro:IPR005805" + /db_xref="InterPro:IPR005806" + /db_xref="InterPro:IPR006076" + /translation="MPQNLIEKAFSRPVESYWIGSTPKTDYPELNENIKTDILVVGGG + ITGIATAYLLQKEGFDVVIIDANRIVHSTSGHTTAKITSLHSIKYAKLIKQLGEEGAG + KYGEVNEKAISTIEDIIKESSIQCDFSRQPNFVYTKEEQYINVIEEEVNAAKSIGLPA + RYEASLPLPFPVQGAVCFDNQAQFHPRKYLLSLADIFVKNGGHIFENTVALDIHEDRE + CTTSTRNGFRIKSDKVIIASHFPFYDGWGFYSARMFAERSYALAVKSPINVPYGMYIS + YEEPTRSIRTQPGEDGSQLLILSGEHHKTGEDKNEKENYINLIKFAETDFKATEVPYR + WSAQDYTVMNEIPFIGHITGNKMNIFVATGFQKWGMTTSHVSAMIIRDIITNGKSEAE + NIFMPSRFTPASSAKNFIKENLDVVDNLISGKLESPPQELTIEPGEGKAIKYDGKKAG + AYMDNDGNIFIVDTTCKHLGCEVHWNSAEKTWDCPCHASRYNYDGTVIEGPALKPLDR + LK" + gene complement(2956941..2957723) + /locus_tag="Ccel_2449" + CDS complement(2956941..2957723) + /locus_tag="Ccel_2449" + /inference="protein motif:TFAM:TIGR02206" + /note="TIGRFAM: conserved hypothetical protein; + KEGG: cau:Caur_2739 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76778.1" + /db_xref="InterPro:IPR011737" + /translation="MFRYFFTYIDDIPQRLHNSLFSIQHILAVAMVVCMWCIMTILFK + DKSEVKKWRMLILTSLLLPLTEGAQVLWYNAVGKFSWGYTLPLHLCSLMFIILPIMTI + TRSRLLMEYSYAMGLAPAFMALLTPDVFYYPTFSFIYIQTILVHGIICFIPVFMVFGM + GFRPDIRSLPKTIAILIAFALMITPVNIITNGNYFFLRFPAPGSLMEVFAGHVGNQWY + LIPTFILGCVLWAVLYVPFLVMERRKTRCLKATKSKKVLADR" + gene 2957892..2959256 + /locus_tag="Ccel_2450" + CDS 2957892..2959256 + /locus_tag="Ccel_2450" + /inference="protein motif:TFAM:TIGR01415" + /note="TIGRFAM: pyridoxal-phosphate dependent TrpB-like + enzyme; + PFAM: Pyridoxal-5'-phosphate-dependent protein beta + subunit; + KEGG: cth:Cthe_1211 tryptophan synthase subunit beta" + /codon_start=1 + /transl_table=11 + /product="pyridoxal-phosphate dependent TrpB-like enzyme" + /protein_id="ACL76779.1" + /db_xref="InterPro:IPR001926" + /db_xref="InterPro:IPR006316" + /translation="MRRDEISKVILSEKDIPKQWYNIVADMPNKPAPYHNPATLDIIK + PDDMKAIFPDEVIRQEMSTERYIDIPDEVRQRYCQFRPSPLYRARALEKQLDTTARIY + YKYEGTNATGSHKLNSAIPQVYYNKLAGIKRLATETGAGQWGSALSLATSQFGLECSV + YMVNVSYQQKPYRRSFMKTFGANVVASPSTLTNSGRSILEIDPDCSGSLGIAISEAVE + DAATHADTNYALGSVLNHVCLHQTIIGIEAKKQMEYLDEYPDVIFACCGGGSNFAGIA + FPFLQDKLNGHNLRAVAVEPSACPTLTKGVFAYDYGDTAKAAPITKMYTLGHDFIPSG + IHAGGLRYHGGSAIVSQLYHDGIIEAKAYGQKSVFEAAVAFARAEGIVPAPESAHAIR + AAMDEAILAKESGEEKVILFCLSGHGYFDFAAYENYFSGLIDDIEFSPESTKKSLQDL + PNIK" + gene complement(2959323..2961383) + /locus_tag="Ccel_2451" + CDS complement(2959323..2961383) + /locus_tag="Ccel_2451" + /inference="protein motif:PFAM:PF02449" + /note="PFAM: Glycoside hydrolase family 42 domain protein; + Beta-galactosidase trimerisation domain protein; + Beta-galactosidase domain protein; + KEGG: pmo:Pmob_0829 beta-galactosidase" + /codon_start=1 + /transl_table=11 + /product="Glycoside hydrolase family 42 domain protein" + /protein_id="ACL76780.1" + /db_xref="InterPro:IPR013529" + /db_xref="InterPro:IPR013738" + /db_xref="InterPro:IPR013739" + /translation="MDKYMPIGMNFPHILHGGDYNPDQWLKAPKILDEDFRLMKLAHC + NVMTIGIFSWMALEPEEGKFDFSWLDEIMDKLSKNEMTAILATPSGAKPSWMSQKYPE + ILRTQADRLKDFHGGRHNHCLTSPIYRKKVSQINRLLAERYARHPALILWHISNEYSG + ECHCPLCQEAFRSFLMKKYEGDLERLNHEWWTGFWAHRYTDWSQIESPSPRGEHETHG + LILDWKRFVSHQTIDFLKNEIKPLRELTPEISVTTNLMGTFPGLEYRELSKEIDVVSW + DNYPTWHTSEQPDWKIGIRTSFVHDINRSLKQGKPFMMMESTPSTVNWQKVNKLKRPG + MHMLSSLQAVAHGSDTVQYFQWRKSRGSFEKFHGAVVDHVGHENTRVFREVAQVGQVL + EKLDEVVGTTVHPKVAIIFDWENRWAMEEAQALARDRIKYEETCVAHYTAFWKRGVSV + DIIGARDNLSQYKLVIAPMLYLTHPGVGERIETFVNEGGTFVATYWSGIVNENDLCHL + GGFPGPLRAVTGIWSEEIDTMHPDENNSLILSDNSLGLSGTYRVQDFCDLVHAESAEV + LARYGEEFYAGRPALTVNRFGKGNAYYMAARTGEDFLEDFYNALMKKLTLSRTLDVEL + PCGVTSQLRTDGQNRYIFLMNFNHEKQDIQLTKGLTDMFTGEIRQGMLELAPFDVKVL + KAKI" + gene complement(2961376..2962905) + /locus_tag="Ccel_2452" + CDS complement(2961376..2962905) + /locus_tag="Ccel_2452" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: dth:DICTH_0042 two-component response regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL76781.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MLKVLIIDDEPAVRAGLKAIIDWDSLGYEIIGEAADGHEGLRLL + IELNPDLCITDIKMPGLYGTEMLEKAREGGFGGKVIILTGYSDFEYARSAIKSGVSSF + QLKPIEEDDLLEAIIKVRKTILSEKEKLESIRSSMNLIYEKQLTDFICGKLPASSVNL + EQLKLCDGIYRVAVIKAIQSDGKIPELFANEQEMHCICIDDLWVVLIWGSGITRFSVI + MPDIFRKMPGLFASVGRQCSTADEIHLSYTDAKKIQQQSFYYQQSDSLVLWDDIQEDF + SSGVSLNSIDIKEYIEVFYNYIEIGQEELLQKKIHCFESEYRRLNLHPDRFAGVLSNI + FIRVRDILSQNYHNLIIPDDARIIHDIYTKQSLHEITDYILSEFLSFMKQIGNNSRDN + IVKRLCIYIEANYAKDLKLESLAKIFCYNSSYLGRIFRSGTGESFNSYLDHVRIRKAK + EMLAEGKYKVYEISYMVGYKNIDYFYRKFKYYVGRKPRDYWGEMSNMTTRIEKGELSD + G" + gene complement(2962883..2964721) + /locus_tag="Ccel_2453" + CDS complement(2962883..2964721) + /locus_tag="Ccel_2453" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: csc:Csac_1355 integral membrane sensor signal + transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76782.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR010559" + /translation="MFVKGLKEGWNNIRIRKKMIGIYAISVLLPVFFVSLYLTYSMSN + AVYSRMVNEAKTDTVRVRDRVNELLYLMTNISDKIYFDKQLKNIISTKYSSFLEFNNA + CKSYPALKEYIQYYSQIEAITLYVDNSTMWDNGFFVKTTDTVRKEDWYKAAVRSGGNM + IWQCFYNNDNNSYYLALVRRIRIDDNGNYAVMVMRVSYSYLTSVIQNEKTTMLMTVDN + DRIVLADDRKKLGTKIDLKGLTAVSGDSEQFLKDVSYENRKVFIVHDSFLPQKTRSTI + QIINITPTSDITRQVIDTYTTGILIALISLVAPVMLMVLFTGNFSKRILFIRTQIHRA + ASGDLDISPGISGSDEIAELYKDLIKMIGDMKKLLQENYEHKLQQQKLLTKQNEAQFK + MLASQINPHFLFNTLESIRMKAFVCGQREIATVIKLLGKSMRSLLELDDNPQPLKSEL + DFVRNYLEIQKFRFAERVDYTIDVQDGIDEKILKVLPLLIQPIVENAFVHGLEQKEGH + GRIDIIVNRYNENIMVIVKDDGLGMEAEKLEEVHCKIKESGGKTGKSIGLSNVNQRIK + LYYGESYGIRVDSSPGTGTTVWISFPEQCLKIYGRNDNQNAQGFNH" + gene complement(2964821..2966956) + /locus_tag="Ccel_2454" + CDS complement(2964821..2966956) + /locus_tag="Ccel_2454" + /inference="protein motif:PFAM:PF00933" + /note="PFAM: glycoside hydrolase family 3 domain protein; + KEGG: cpy:Cphy_0220 glycoside hydrolase family 3 protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 3 domain protein" + /protein_id="ACL76783.1" + /db_xref="InterPro:IPR001764" + /db_xref="InterPro:IPR002772" + /translation="MQYDQIDKKIDELLSMMTLEEKAGMCHGAGLFRTAGVPRLGIPP + LVFSDGPMGIRNEFADDNWNTVGGNTDFVTYLPANTALAATFNRTLAESLGEVLGCEA + RGRGKDVILAPGVNIIRTPLCGRNYEYFSEDPILTAELAASFIKGVQRFDVAACVKHF + AANNQETERLAVSAEVDELTLRELYFPAFEASVRAGVLTVMTAYNRLNGTFCSHSRQL + ITEILREEWGFNGVVVSDWGAVHDTESPAIAGLDIEMNVTSNFNEYFFAKPLINAIKD + GKIPERMLDDKVRRILRLMFRLNMFSKDRKRGGFNLPQHQQAVLDAAKESFVLLKNDR + EVLPLNADGIKTVAVIGSNADKKHSSGGDSAAVKALYEVTPLSGIVMRLASGAKVTYY + PGCPDETHYKEEFHIPSNADEKTRADIEEKARAADEDYRKIQMRLEDEAIQAAKTADA + VIFIGGNGHEQESEGRDRPDMALPYEQDKLLSRVLDANPNTVVVIISGSPVNMSGWID + KAPTVMQGFFSGMHGGTALAAVLFGDENPSGHLPFTIPLKEEETGASALGEYPGGETV + CYSEGLFVGYRYHDAFNIPPLFPFGYGLSYTTFSLANESFRRLPCVGTEYEIHVDITN + SGNRPGAQSVQLYVEPEKKDGSPIRTLKGFEKTYLNPDETKTITFKLDERTFSEFRPH + EGWVFVPGNYTIHIGTSSRELPIAIALAL" + gene complement(2966986..2969298) + /locus_tag="Ccel_2455" + CDS complement(2966986..2969298) + /locus_tag="Ccel_2455" + /inference="protein motif:PFAM:PF01055" + /note="PFAM: glycoside hydrolase family 31; + KEGG: csc:Csac_1354 alpha-xylosidase YicI" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 31" + /protein_id="ACL76784.1" + /db_xref="InterPro:IPR000322" + /translation="MKFLNGYWMSKEGYSLYYPSEAYRIEKSGDVLRIFAPCNQINHR + GDTLGGPALTIELSSPAEDVIRISVYHYKGVKKAGPYFELNTPGISPSISEDEDAVWF + GSGQIKARIDKKTYNIDYYRGDERLTGSGWRHLAYIKHESGQTYMREQLDLDVGECVY + GLGERFTPFVKNGQTVDIWNQDGGTCTEQSYKNIPFYITNRGYGVFVNDPGLVSFEIC + SEVVSRSQFSVEGESLDYFIIGGSDCKEVISNYTALTGRPAIPPAWSFGLWLSTSFTT + NYDEKTVTSFINGMSKRRIPLSVFHFDCFWMKEFNWCDFIWDKDVFPDPKKMLSKLKE + KGLHICVWINSYVSQESVLFDEGMQKGYFIHKKNGSVWQWDMWQPGMAIVDFTNPDAC + NWFSQKLLNLVDMGVDCFKTDFGERIPTEDVVYYDGSDPVKMHNFYTYLYNRTVFDTL + KQVGKEAVVFARSATAGSQKFPVHWGGDCTADFSSMAESLRGGLSLGLCGFGFWSHDI + GGFEQTATADVYKRWLAFGMLSSHSRLHGSTGYRVPWLYDEEAVDVLRFFANLKCRLM + PYIYKTAIQASQQGLPSARAMFVEFPEDPACTTLDRQYMLGDSLLVAPVFSKSGLVEY + YLPLGEWYNLLTGEIVTGGSYRKEKHNYMSLPLFVRPGSLLAIGDNEEETVYEYAQGV + RLLLTPLADGYEASTSVYEKDGHEALNVTVNRKESDITVIAEGDGKPWSIKLCGITAK + GCTGGTIEKEQDGIVFMPGNSTGSYTVRIL" + gene 2969593..2970543 + /locus_tag="Ccel_2456" + CDS 2969593..2970543 + /locus_tag="Ccel_2456" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_1547 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76785.1" + /db_xref="InterPro:IPR000515" + /translation="MSSPANSTTCVKLKKNKHRDRFKLFFMALPFLILCFIFSYLPLY + GWIYSLFDYRPPFKLYQCDFVGLKWITSIITNPAYRNAIGDVLRNTFAISGLNLLTSV + LPLAFAVFLNEVKRGWFKRSVQILTTLPNFISWVLVYSVAFVFFSTGDGVVNKILINM + DIISSPINFLASDDHTWLAMTLWSLWKTLGWSAIMYLAAIAGIDQELYEAAKVDGAGR + FRMMWNITIPSLLPTFFVLLMLSVANFLNNGLDQYYVFQNAMNKAHIQVLDLYVYNIG + VGSMNFPLATAVSMLKSIVSIVLLFTVNGVSKLLRGETIV" + gene 2970569..2971492 + /locus_tag="Ccel_2457" + CDS 2970569..2971492 + /locus_tag="Ccel_2457" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: cpy:Cphy_1548 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL76786.1" + /db_xref="InterPro:IPR000515" + /translation="MLPILEKKQRYSLGDILFFIIIYVVFTVLTIACIYPFYFLIINT + LTANDISSKAAVLLLPQKIHFDNYLKILNLNGLTDALIVSVARTIIGAALTVFASAFL + GYLFTKKEMWGRKFWYRFVIVTMYFNAGLIPWYITMLNLGLRNNFLAYILPAIVAPFN + IILVKTYIENTPQALQEAAQIDGAGYFTIFIKVVWPLCVPILATVTIFAAVGQWNSFT + DTLLLMTDSHLYTLQFILYRYLNQASSLASIMRNSGAGIGQQVSSLAGSQTAQSVRMT + VSVVVILPILFVYPFFQRFFVGGIIIGAVKG" + gene 2971590..2973356 + /locus_tag="Ccel_2458" + CDS 2971590..2973356 + /locus_tag="Ccel_2458" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: cpy:Cphy_1549 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL76787.1" + /db_xref="InterPro:IPR006059" + /translation="MKKWLIKSLSAAIILSFTVSMAACTKPGTDSSSSSGSGSSTSGS + NPYKDTVTLDVYTMTGNFQGEQIGWFGKVIKDKFNLKLNIISAQTDGNADQSFQTRSA + SGDLGDIVVYGAIDTKFTDSLKAGLLMKLSDNDLLAKHGDNIVKNFSGAIKRISAKYG + DYAIPNNVSNESPITPSEDSDLTFGVYTRYDYYQEIGSPKLNSFDDVYPMLKAMAKKH + PTNSNGQKQYAFSLFKDWDGCMMMFGKMIAELYGYEEAPFGGFLLTNNMATEYQSIID + PDGYYVKALKVYNQAYRDGLLDPDSINQTWDDITKKYANGQVLYSQFSWLGPNNFNNA + DNISKGVGFALVPIADEKIWSNGFTPNGSTYLVALGKSCKNPERAMDFLNWYYSSEGE + MIIKNGPEGLAWRIENGKPTLTDFGRKCMPSIAVEVSSEFGGSDWQTGECKVGFDGLA + ANSINPNTKEPYYYKLWSSTLSSNTSTLQKNWSAAMDDALSTKDWLMKNNHVSVSPGT + DYVGPTLPSDIQSTQDVVKMDIRDYSWKMVYAKNDSEFNSLLKQMTEKVKGEGYDTVV + EWNKQQLAELSAARKQAAENSK" + gene complement(2973387..2974157) + /locus_tag="Ccel_2459" + CDS complement(2973387..2974157) + /locus_tag="Ccel_2459" + /inference="protein motif:PFAM:PF02698" + /note="PFAM: protein of unknown function DUF218; + KEGG: cth:Cthe_1772 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF218" + /protein_id="ACL76788.1" + /db_xref="InterPro:IPR003848" + /db_xref="InterPro:IPR010916" + /translation="MKKGLLRIFLYLLAVAGITDTIIIAKRSGGMDLGILLPAVGGAC + IILWALFKKTGLYRKKQNLFGKLIKVFTGLFLVWLVSFIIITAIIITSAIPDKEQQVD + SVIVLGAGLKGETPTLVLKKRLDYTLEYYKLNPDVRIIVSGGQGKGETITEAEAMKRY + LVKHNIHENIILKEERSTSTYENMQYSKNLYENTMGKPLGKVMIITNDFHMFRAKILA + KRAGLKPYGISSGTPWYLYPNVCLREYFALFKSLLLDR" + gene complement(2974183..2974830) + /locus_tag="Ccel_2460" + CDS complement(2974183..2974830) + /locus_tag="Ccel_2460" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2543 spore germination protein-like + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76789.1" + /translation="MNNSKKLKTIVAVLFCFIVILVALLVYAVGRSKEPSESSSTPSN + SSMTASQTTESQKTASQTTAAKTTSVNETLELKLYYYDADDYEKPKEIRNITLDKKLY + ETDMTSAINNVLSSTDIKINKAVLDGKKITIDLPKETVKKFNSGSAGGITHTNILAMT + VLNLPGVEQMQVTVDGEAGIESDHFSFNGTFIKPEEGKKYTFSPSDNPGKTLEFN" + gene complement(2974864..2975622) + /locus_tag="Ccel_2461" + CDS complement(2974864..2975622) + /locus_tag="Ccel_2461" + /inference="protein motif:PFAM:PF01643" + /note="PFAM: acyl-ACP thioesterase; + KEGG: ckl:CKL_0088 acyl-acyl carrier protein thioesterase" + /codon_start=1 + /transl_table=11 + /product="acyl-ACP thioesterase" + /protein_id="ACL76790.1" + /db_xref="InterPro:IPR002864" + /translation="MEPLSIYKKNYHVDYGDADFYKRLKLSYLFNYFQNIAGLHSENT + NVGIRKLQNDYGAAWVMTRMLMDINRMPECNEEISIETWPVEPKKKMIDRNFIVRDMD + GSILASAISTWVILDMEKREMVRIDSVIPPQYPEFLKSKAIDRKFDKLKPSGQLQPAY + KKLVGFSDIDINGHVNNAKYIDYILDCFTVEKHGEYRVKSIQINYVNEAVAGDIISLY + KDTVDMDGSDKAVYITGINEVDGKVNFESHIRVQ" + gene complement(2975649..2976218) + /locus_tag="Ccel_2462" + CDS complement(2975649..2976218) + /locus_tag="Ccel_2462" + /inference="protein motif:TFAM:TIGR02227" + /note="TIGRFAM: signal peptidase I; + PFAM: peptidase S24 and S26 domain protein; + KEGG: cth:Cthe_2079 thylakoidal processing peptidase" + /codon_start=1 + /transl_table=11 + /product="signal peptidase I" + /protein_id="ACL76791.1" + /db_xref="InterPro:IPR000223" + /db_xref="InterPro:IPR011056" + /translation="MKILKELLSWAGTILGSVILALIVIIFIFQPTSVDGHSMDNTLH + DKDKIIINKTQNIFRSKPNYGDIVIIDSRVDRKRTFWDNVIDPLKYNILVSRFSDNNQ + QVFWVKRVIGKAGDELQFKDGKVIRNGTPLEEPYIREPMLYQSEDTIKVPEDSVFVMG + DNRNESKDSRMIGPIPQDHIVGKYLFKLG" + gene complement(2976476..2978290) + /locus_tag="Ccel_2463" + CDS complement(2976476..2978290) + /locus_tag="Ccel_2463" + /inference="protein motif:PFAM:PF01011" + /note="PFAM: Pyrrolo-quinoline quinone; + KEGG: cth:Cthe_0739 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Pyrrolo-quinoline quinone" + /protein_id="ACL76792.1" + /db_xref="InterPro:IPR002372" + /translation="MRRHRRRATNKLKIILTILILSLITTGVMIGLSKLSDSGKLGNI + RNPIVTDTTAGNGQDEEEELEPEPVADPMPAEITDQTKLKTSWTTESTFDGAKAFTDY + AFDNVFNNGTKMKSWVFTNNTPLKEYTVKDKNKISFGSSDTYSDLEGVTAFRGNNYRD + NASFGTRTVTQKKLEIVWKKTGLGAISSEGSYWPGTGWTGQPLLVHWPEDIRKMMNIN + SDMKSKDLVEVIYPTLDGNIYFLDMDTGKPTRNPIKIGYPIKGTAMIDPRGYPILYTG + MGINDNGGKLSEYKYRIINLLNQKEMYSIFGRDQVAFRGWGANDSSALLDKKTDTLLD + CGENGLVYKVKMNTKFDKTAGTLSVAPQITKYRYRSPYNDEQGIENSPAVYKNYMYFC + DNGGTLQCLDLNTMKPVWIYDTGDDTDSSIVIEETKDGVFLYTANQVDKRGENGKNKF + ADCNIRKINAKTGELVWQKDYKCLYNYYINGGALGTPVLGKDDISNMVIFNICFTGSN + TDGNMVALDKNTGEEIWNKKLTAYSWCSPVDFKSSDGKTYLVYTDYAGYMRLVDPMDG + KTLDSVSLEGNVESSPAIYNDTIVVGSYAKKIFGIKVK" + gene complement(2978314..2980131) + /locus_tag="Ccel_2464" + CDS complement(2978314..2980131) + /locus_tag="Ccel_2464" + /inference="protein motif:PFAM:PF01011" + /note="PFAM: Pyrrolo-quinoline quinone; + KEGG: cth:Cthe_0739 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Pyrrolo-quinoline quinone" + /protein_id="ACL76793.1" + /db_xref="InterPro:IPR002372" + /translation="MSRKKRKNVNKLLPALVVGLLALLVAMTAIYLIYIGKFPQKDLN + KTPQTASTPSATATVSDTTGTVTENVPAEETHKAKQPAESTNPDELLVSWKNPASFIS + KAAMGDGSIKKTFKDGNIRYWRLVSNKVTSGYKPSYNLAFGSPEMYSELEGVTTFRGN + NYRTAPSWGKADVKEKKLEIVWTHDIGAVSGVGSYWPGAGWTGQPLLAHWSPDVRKVM + NINNDLKEKDLVEVIYPVFDGHVYFLDMETGKESRPRMNIGFSVKGTGMVDPRGYPLF + YTGQGLNENDGRKGTFKYRIFDLIQQKEIFSLPGNDPVAFRQWGANDSSALLNRYTDT + LINCGENGLIYKAKLNTKFNKEAGTISINPTVTKYRYKSSYSSDQGIENSPAVYRNLM + YFADNGGTIQCLDINKLEPVWIYRSGDDTDSSITLEETDEGVFLYTANEIDKRGKSGA + KANCNIRKINALTGELVWQKDYSCVYQNYINGGALATPVLGKNDISDIVIFNVALTGS + TSNGTLVALDKKTGEEVWKRQLDAYSWSSPVDFLSEDGKTYMLFCDFKGYMHLIDPKT + GEDLDKISVGGNVEASPSVYNNMAVVGTYAKKIYGVKIK" + gene 2980408..2983017 + /locus_tag="Ccel_2465" + CDS 2980408..2983017 + /locus_tag="Ccel_2465" + /inference="protein motif:TFAM:TIGR01494" + /note="TIGRFAM: ATPase, P-type (transporting), HAD + superfamily, subfamily IC; + PFAM: cation transporting ATPase domain protein; Haloacid + dehalogenase domain protein hydrolase; E1-E2 + ATPase-associated domain protein; + KEGG: cpe:CPE0333 cation-transporting ATPase" + /codon_start=1 + /transl_table=11 + /product="ATPase, P-type (transporting), HAD superfamily, + subfamily IC" + /protein_id="ACL76794.1" + /db_xref="InterPro:IPR000695" + /db_xref="InterPro:IPR001757" + /db_xref="InterPro:IPR004014" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006068" + /db_xref="InterPro:IPR008250" + /translation="MNNYYNLSTEEVLKKLTTGMEGIPDKEIDRLRTKYGFNELKAEN + KAGFFKVFFSQFKDFLVIILLIAGVISLFLKDYESATVIFAVTILNSILGTVQHFKAE + KSLDSLKTLSSPVAKVIRNNEKLEIPSREVLVGDILLLEAGDFVSADGRILENYSLQV + NESSLTGESESVLKDTDVIKDTDIAIGDRKNMVFTGSLITYGRAVVAVTDIGMSTELG + RIAHLMESAQSKQTPLQVSLDKFGKKLAVAILFLCGLIFAATVFRGYSLIDSFMFAIA + LAVAAIPEALSSIVTIVLAIGTQKMASENAIVRKLHSVESLGSVSVICSDKTGTLTQN + KMVAEKVFVDSKVLEPGGLSMEDKLQRTIVKMSALASDATITGDKGVGDPTEIAFIKL + ANNYGFEEEDLRKEYPRLSEVPFDSDRKLMSTFHNIEGQYLMFTKGAPDIILERVSSF + AEENGERPVSKSDIEMIEKINRDFSNEGLRVLAFAFKKFDSQVSISTNDEKDLTFMGL + IAMIDPPREESKLAVADCIKAGIKPVMITGDHKITASAIARQIGIMNENGRAVEGTDV + EKMTDEELRNNVENISVYARVSPEHKIRIVKAWQDKGNVVAMTGDGVNDAPALKQADI + GVAMGKVGTEVAKDAASMILVDDNFATIVKAVSNGRSIYTNIKNSIKFLLSGNTAGIL + AVLYTSILALPLPFTAMHLLFINLLTDSMPAIALGLEPYRKDVLKSKPRDINEPLLSK + GFLFHVLFEGAVIAASTLAAFYYGLNKGGATLASTMAFAVLALSRMIHGFNCRSKYPI + YRIGIFSNKFIWGALFIGVILLGLVLFVPLFQSLFTINPDVLKNLGVIVILSLVPLVV + IQIYKAIRTSIEK" + gene 2983101..2983229 + /locus_tag="Ccel_2466" + CDS 2983101..2983229 + /locus_tag="Ccel_2466" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76795.1" + /translation="MGKNKSTKSDGVEFFSDTQNLGTEKRISKGNIKKSVLETKTK" + gene complement(2983299..2985023) + /locus_tag="Ccel_2467" + CDS complement(2983299..2985023) + /locus_tag="Ccel_2467" + /inference="protein motif:TFAM:TIGR02512" + /note="TIGRFAM: hydrogenase, Fe-only; + PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding + domain protein; iron hydrogenase small subunit; + hydrogenase large subunit domain protein; 4Fe-4S + ferredoxin, iron-sulphur binding, conserved site; + KEGG: cth:Cthe_0342 hydrogenase, Fe-only" + /codon_start=1 + /transl_table=11 + /product="hydrogenase, Fe-only" + /protein_id="ACL76796.1" + /db_xref="InterPro:IPR001041" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR003149" + /db_xref="InterPro:IPR004108" + /db_xref="InterPro:IPR013352" + /db_xref="InterPro:IPR017900" + /translation="MDMVNLKIDGFDITVPKNTTILEAAKKLNIDIPTLCFMKGINEP + GSCRVCVVEVEGWRGLHPACATKVFEGIVVKTASSAVREARKNILELIMANHNRECLS + CPRNLKCELQTLCNDNGIDTIPYEGKVDKGCLDTSGPIVRDPNKCVLCGRCVSVCSKI + QDVSAIDFAFRGANMTVTTAYEEGLASQECINCGQCIKICPVGALQERDDTEKVWKAL + ENPDLHVVVQTAPAVRVALGEEFGFAPGTNVEGKMVAALRRLGFDKVFDTNFSADLTI + IEEGNELINRIQNGGKLPLITSCSPGWIKYCEHNYHDFIENLSSCKSPQQMFGAIAKS + YYPTKADVDPRKVFVVSVMPCTAKKYEADREEMSVDGLKDIDAVITTRELAKMIRQAG + IKFEELEDSKQDSILGTYSGAGTIFGNTGGVMEAALRTVADKLTGKSLDCIEYTAVRG + LDGIKEATVNVAGMEIKVAVANGTGNASKLLDKIRAGEANYHFIEVMGCEGGCINGGG + QPIIKDKSTTDDVKAARIKGLYNIDVSCEKRKSHENPKIQKLYAEYLGEAGGHKAHKL + LHTHYTAR" + gene complement(2985026..2986778) + /locus_tag="Ccel_2468" + /pseudo + gene complement(2987222..2989102) + /locus_tag="Ccel_2469" + CDS complement(2987222..2989102) + /locus_tag="Ccel_2469" + /inference="protein motif:PFAM:PF00488" + /note="PFAM: DNA mismatch repair protein MutS domain + protein; + KEGG: dsy:DSY2437 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DNA mismatch repair protein MutS domain protein" + /protein_id="ACL76797.1" + /db_xref="InterPro:IPR000432" + /translation="MRTPEEKYKKRVDVYKRKLELYTAKSSNTGNYKLLVFFTGLLGA + AVFFFLKLYILMAAVILIFGGLFVYLSTIHNTLIKSKNYYQAMLQINQMCLKRAIGEW + NEFTDKGEEFLNPQHDYTYDLDIFGKGSLFQMLNMTASYSGRHKLAELFLNPLKQKEE + IYNRQEALQELAKKLLFRHRLFSNGLILNKNTILTDGTDSDKKRKKTLLDTMNKLDDV + YSWVKKEKSLYSSPKFKLFIFAMPAFSFIMLILGIMGLVPVYVPVALYILQFILIGFR + AESRNKTFELVEKYSDTLKVYKSLLKKFETEKFSSGYINSLKNNLKDDYGNPAWRQIE + KLSKIWELIANRYNLMHAIINIATLWDFHCLVALENWKKGGGKYVEKWFDIIGEVEAL + CSLSLMCHDNPEYVMPRICDENNLRIEALHLGHPLLSKGRKCNDIKINSAEPILLITG + SNMSGKSTFLRTVGVSLVLTYLGLPVCAESFTCPVLKVYACMRTSDNLGQSVSSFYAE + LLRVKMIVEAVQRGEKVFFLLDEIFKGTNSADRHTGAKMLINQLDKKGAWGLVSTHDL + ELADMENESKGRIRNYHFKEYYKDDQIFFDYQLRKGVSDTKNAIYLMKMAGVNVEDIS + PQ" + gene complement(2989423..2989782) + /locus_tag="Ccel_2470" + CDS complement(2989423..2989782) + /locus_tag="Ccel_2470" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76798.1" + /translation="MYIFIIKLIFGCKISCHGWRYYTFKLVNINNLDLVMKLVYNDTN + LEMCALKHYGSFEEIPYCSENEIKRLHIHNQWLENMLGKPRESEDWGIKYKFQWGEIS + SVYSPQTPESAIFIKWL" + gene complement(2989833..2990618) + /locus_tag="Ccel_2471" + CDS complement(2989833..2990618) + /locus_tag="Ccel_2471" + /inference="protein motif:PFAM:PF00459" + /note="PFAM: inositol monophosphatase; + KEGG: nis:NIS_1712 inositol-phosphate phosphatase" + /codon_start=1 + /transl_table=11 + /product="inositol monophosphatase" + /protein_id="ACL76799.1" + /db_xref="InterPro:IPR000760" + /db_xref="InterPro:IPR001000" + /translation="MSTIVETAIKDAVKMVREAGQLLLQAMDDKKVITKNGTANFVTE + IDLKVQEILFGKLLKLLPDSNIIAEETADNIFALDKYTWILDPVDGTTNLMYGYKYSA + IALGLVVDGVPYAGIVYNPFLNEMFTAQKGKGAFVNDSRIGVTTNGSLSDSLLGYGTS + PYDRGKADETFRITKNVFNKCRDIRRSGSAALDICNVAAGRTDGFFEMELQPWDYAGA + AIILEEAGGRITDWQGKNLTYISKSSAIVTNGLIHKELLDAIK" + gene complement(2990618..2992330) + /locus_tag="Ccel_2472" + CDS complement(2990618..2992330) + /locus_tag="Ccel_2472" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: cth:Cthe_1232 AMP-dependent synthetase and ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL76800.1" + /db_xref="InterPro:IPR000873" + /translation="MKTKPLYEVRQISNLKDMIEQSAGLYGSKPAFLIKQKGNSAYTP + VTYKKYKDDIDALGTALISLGLKDKKVALIGENRYEWVTTYLSVCNGTGVVVPLDKEL + PQNEIENCLLRSHADAIIFSGAVSKSILSILKNITTCKYYINMDIDEDADGQMSYGRL + LEKGYDLLKNGNRDFLDAVIDNEKLNILLFTSGTTDKSKAVMLSHRNIAENLMAMCSM + LYIDQKDVFLSVLPAHHTYECTCGFLCQMYRGATIAFCEGLRHIVKNLSESKCTVMNG + VPLIFESIYKQLMHQVAKRPGGAKKLKFGIKLSNTLGKLGIDVRKKLFAEIHKALGGH + LRLFISGAAAIDPEVSKGFRNIGIQLVQGYGLTECAPIVGLNRDCWFKDDAAGLPLPG + LKVAIDSPNAEGVGEIKVSGPSVMLGYYENKEATEEVIRDGWFYTGDMGYMDSDGFIH + ITGRMKNVIITKNGKNVYPEEIETLLNRSDYIKESLVFGKHDNDDVVVCAQIVPDRDK + IEEDYKNGIIESSDAETVINSEVKRINKELVTYKYVKEFNLRDKEFEKTTTKKIKRYQ + ELKK" + gene complement(2992431..2993216) + /locus_tag="Ccel_2473" + CDS complement(2992431..2993216) + /locus_tag="Ccel_2473" + /inference="protein motif:PFAM:PF00809" + /note="PFAM: dihydropteroate synthase DHPS; + KEGG: mta:Moth_1207 + methyltetrahydrofolate:corrinoid/iron-sulfur protein + methyltransferase" + /codon_start=1 + /transl_table=11 + /product="dihydropteroate synthase DHPS" + /protein_id="ACL76801.1" + /db_xref="InterPro:IPR000489" + /translation="MIIVGEKLNSSIPKMFEKMKEKDTETIKQIAISQQEAGAGYLDI + NTAIFREDEFEMLKYILDIVLENTDCGIMLDSPSPAVIEKALPLISGRDIIINSVTLQ + DRIKELLPLAKSYKTGVVGLPIDEEGIPKTVEKRVENSLKLIELMNKEGIKSTDIYID + ALAEAVAAESEASAITIRAIDGIRKANPDVHIICGVSNVSFGLPKRTAINSVFLSAAI + FAGLDSGIVDITNEQIQSTIYTAEMIAGLDEYCMEYLGYIRSR" + gene complement(2993218..2995065) + /locus_tag="Ccel_2474" + CDS complement(2993218..2995065) + /locus_tag="Ccel_2474" + /inference="protein motif:PFAM:PF02219" + /note="PFAM: methylenetetrahydrofolate reductase; + homocysteine S-methyltransferase; + KEGG: ckl:CKL_1762 bifunctional homocysteine + S-methyltransferase/5,10-methylenetetrahydrofolate + reductase protein" + /codon_start=1 + /transl_table=11 + /product="methylenetetrahydrofolate reductase" + /protein_id="ACL76802.1" + /db_xref="InterPro:IPR003171" + /db_xref="InterPro:IPR003726" + /translation="MTALSTKSIIIAMKGGLSTRLIKRKRKGKEDMNIFSNRDYFLFD + GAIGTYYSLKYRSNTPCELANINERENIFNIHSEYIQAGVNAIKTNTFSANRFSLGCN + QSEVEKIIKSGYDIAVQACSGQEVVVFADIGPIPDEKGINPKEEYIKIVDIFLECGAK + NFLFETFANTDILIGVAAYIRLRLPEAVVVTSFAVYPDGYSKEGLFYVDLMDKMYASG + LVDAVGLNCISGPAHMYRLIKKADIRGKSIIIMPNSGYPGSERGRTVYSDNSEYYAEK + LLDLKNLGVKIFGGCCGTTPKHIAAAAQLLSRNPTKTDAQSKTHIETCNLANENILDK + LVKTKKPILVEVDPPFDTNWEYMLRDTLLLKQAGADIITIADSPLAKARAESTIMAAK + IQREAVIPVMPHITCRDKNLLGIKASLLGVHIEGIRNVLVITGDPIANIERSRIKGVF + SFNSSNLANYIKSLNSNVFCGQEIKIAGALNVNAVNFSAELKKAFTKIENGISCLLTQ + AIYTKSAVDNLLKAVETLKVPIFAGFMPIVGYKNALFIDNEVPGIDIDNETIEKFRDK + SREESEKLGMEITMDILKEIYPHVSGIYLMTPLKRTNVICELIKKIKEI" + gene 2995190..2995366 + /locus_tag="Ccel_2475" + CDS 2995190..2995366 + /locus_tag="Ccel_2475" + /inference="similar to AA sequence:KEGG:Amet_0741" + /note="KEGG: amt:Amet_0741 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76803.1" + /translation="MDIAAVSISMAQASLAQNVNISVAKLAMNSMNQAGADLTKMMEL + SVNPGLGSKFDVSI" + gene complement(2995455..2996870) + /locus_tag="Ccel_2476" + CDS complement(2995455..2996870) + /locus_tag="Ccel_2476" + /inference="protein motif:PFAM:PF00905" + /note="PFAM: penicillin-binding protein transpeptidase; + KEGG: cac:CAC0506 penicillin-binding protein" + /codon_start=1 + /transl_table=11 + /product="penicillin-binding protein transpeptidase" + /protein_id="ACL76804.1" + /db_xref="InterPro:IPR001460" + /translation="MDNLTNNIKRIMIIFLVVFFVLISYLAYFTLVKGPEIVTRPDNR + RMWDIRNKVVRGTIYDRNGKELSISEKKSGGNDYKRVYKGGAVTAHALGYYDPQYGIT + GLENLYDSYLSSNISASLLAWIGNGFKEVNKKGDDVYTTIDYQLQKTAYDALGSLKGS + IVVLKVDTGEILATVSKPSYDPNSLSKNWKTLVNSKSVPLLNRSVSGLYPPGSTFKVV + TAVSALENIDGIKNESFNDKGKLNLGGGYTLSNDNGKVLGQINLEKAFVKSSNVYFGS + MGIRLENDLFKTAQNFRFNRDIPSDGIVIDKSRFPKYKNYEKGNMAQSGIGQAEVLST + PIQMALVAQTIANDGVMMKPTLVNKITDYNGSTVQSLKPSEIDRVTSAQYASEIRKYM + RDVVSKGTGTRAQVSGVQVCGKTGTAQHIESKIPHSWFIGFAPYKNPQIAIAVIVEEG + GYGGVAAAKISQKVMSRYFHK" + gene complement(2996895..2998094) + /locus_tag="Ccel_2477" + CDS complement(2996895..2998094) + /locus_tag="Ccel_2477" + /inference="protein motif:PFAM:PF01098" + /note="PFAM: cell cycle protein; + KEGG: cac:CAC0505 cell division membrane protein" + /codon_start=1 + /transl_table=11 + /product="cell cycle protein" + /protein_id="ACL76805.1" + /db_xref="InterPro:IPR001182" + /translation="MTKKLRTFQFLIYIFLFFGFLNLGVLKKPFDPKAGIFFGILVVI + IAVTTWVLKRFYPMGDRIIFLLAMLLSSIGIIMLYRLNIDLATKQLVWMLMGILAFLF + IVLFIKRGLAQFARLKYVFLTATIMFMSMATFIGYEILGAKNWVKIGPVSFQPSEFGK + IFLILYLAIALSNLNTRKKLIEPGIVISISLGFMVIQRDLGTALIIFAISVTMVYLAT + SKKLYVFISLALFASGGAASYAMFDHIKRRIMIWHNPWPYVYNESYQLVQSMYAIATG + GLFGRGLGMGHPGYVAVNESDFIFSVICEEMGLLMGFAILILHFLLFYRSIRSAIHAE + NNFTKLLTAGLSVMIATQTLVIVGGVTGFIPLTGITLPFVSYGGTSLLISFLSLSIIQ + KVSEGEA" + gene complement(2998124..2998552) + /locus_tag="Ccel_2478" + CDS complement(2998124..2998552) + /locus_tag="Ccel_2478" + /inference="protein motif:PFAM:PF00498" + /note="PFAM: Forkhead-associated protein; + KEGG: cbf:CLI_3569 FHA domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="FHA domain containing protein" + /protein_id="ACL76806.1" + /db_xref="InterPro:IPR000253" + /translation="MDFSSLSVVFRIILVVLIFIIIIYALKIISKDLKRGKPGKNLGW + KLRIEYSADKSSLEEGEIVPIGSKLTIGRNKNNQMVLASRAVSNYHAKIYFEDSRYMI + EDLDSTNGTFVNGNRVDKKSLQPGDEIRISETVFTITDDD" + gene 2998820..2999086 + /locus_tag="Ccel_2479" + CDS 2998820..2999086 + /locus_tag="Ccel_2479" + /inference="protein motif:PFAM:PF06961" + /note="PFAM: protein of unknown function DUF1294; + KEGG: cth:Cthe_0204 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1294" + /protein_id="ACL76807.1" + /db_xref="InterPro:IPR010718" + /translation="MHKYFITIIIILNIIGFILVLLDKYKAKNRLWRIPERSFFLLSI + LGGSIGVYAGLLTFKHKTRRWYFMTIIPLIIVAQSIFIYFLTKK" + gene 2999223..3000728 + /locus_tag="Ccel_2480" + CDS 2999223..3000728 + /locus_tag="Ccel_2480" + /inference="protein motif:TFAM:TIGR02900" + /note="TIGRFAM: stage V sporulation protein B; + PFAM: multi antimicrobial extrusion protein MatE; + polysaccharide biosynthesis protein; virulence factor MVIN + family protein; + KEGG: ctc:CTC00988 stage V sporulation protein B" + /codon_start=1 + /transl_table=11 + /product="stage V sporulation protein B" + /protein_id="ACL76808.1" + /db_xref="InterPro:IPR002528" + /db_xref="InterPro:IPR002797" + /db_xref="InterPro:IPR004268" + /db_xref="InterPro:IPR014249" + /translation="MGLDKFYKNSAILTLSNSVTGLIGFTFSIILSKKLGAEGLGLYG + LIMPIYSLLLCLTTDGLITAVSKTCAVYNSKRDYRNLHRSVKVSICFLGLWSISVAVL + VFFNAPFISKFIIKDVRALNAVRIICPALVFVPMSAIFKGFFYGFEKFTIPAGIDILE + KCIRISILLVTIAVLQLNDIKNTVTIAYFALAIGELISMLFLLTGFKLVSRKLKPSGV + KVQNPLQLLADILVISCPLCLNGFISSALATASTLILPRRLMSAGISYDVALQQIGKF + MGMALTTVNLPFIIVSSMMTVLIPDLSLSLSKNDMWSTEKRISQVLRISCLVGLGTLI + VSICIPGKLGIFFYGRNDLGKMVMAAGLCNFISYVASASFGILNGLGKQNINLKNSLI + VSVENLVLVFILTGIPAINIYGVGISLAITSLTALILNLIEIRKSCDIRFSLPKGLIL + AICGFAGFAAMRIVSIIIPDNFMVFDVIMSVGICFLVIFYLTKFYNCKHNW" + gene 3000788..3001411 + /locus_tag="Ccel_2481" + CDS 3000788..3001411 + /locus_tag="Ccel_2481" + /inference="protein motif:TFAM:TIGR01549" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, + variant 1; + PFAM: Haloacid dehalogenase domain protein hydrolase; + KEGG: sth:STH2367 phosphoglycolate phosphatase" + /codon_start=1 + /transl_table=11 + /product="HAD-superfamily hydrolase, subfamily IA, variant + 1" + /protein_id="ACL76809.1" + /db_xref="InterPro:IPR005833" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006439" + /translation="MIKYVIFDVDGTMIDTEKAINYAYQSIIFKKYGRYFTEEELLKG + YGVPTAVSLERYGFTDIESVLKEYYGYLMEGFTKCNTFEGIPEILNNLKELNVPLGVV + TSRCKYEIEVDSCLQQFVKYFKCIVTADDTTLHKPNPDPLLLAMDKLNAVPYETLYIG + DTVFDRECAKNAGVKFALAVWGSNNSENINADFLFKKPADLLDILKM" + gene complement(3001413..3002894) + /locus_tag="Ccel_2482" + CDS complement(3001413..3002894) + /locus_tag="Ccel_2482" + /inference="protein motif:TFAM:TIGR00711" + /note="TIGRFAM: drug resistance transporter, EmrB/QacA + subfamily; + PFAM: major facilitator superfamily MFS_1; + KEGG: ckl:CKL_1650 transporter protein" + /codon_start=1 + /transl_table=11 + /product="drug resistance transporter, EmrB/QacA + subfamily" + /protein_id="ACL76810.1" + /db_xref="InterPro:IPR001411" + /db_xref="InterPro:IPR004638" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MENTEKQYKNKGLILLNIVLLTFMSCLDSSIVNVALPVMANEFS + VGMGSISTIVSTYLIAISATVLIFGRLGDIKGKVKIFKTGIVVFTFGSLLCAVSRTLN + ILVISRIIQAIGAASFMATNQGIITRTFPANERGRALGITGSFVALGTLAGPPLGGFI + VDVASWEYIFLINIPIGIFAFIMGIKVLPKDEEVTDTKFDIKGAILFLISIISLFSAL + LAGEQIGFLKPVILLSFGVAAISFILFIRIEGRVESPLLQLSIFRNKLFSLSIFCGFL + LFVCMSCSNIILPFYFQDIIKMTPWLTGIYLISYPLILLVVSPVSGYLSDKTGSETLT + FVGLSIFSIGCFLMATINQTFNPIKIILFISLMAVGNGMFQSPNNALVMSTVPRSRLG + IAGSINALVRNLGLVIGVSVSTLVLYGMMSFKVGYKVTNFVEGKEAEFIFGMSSAYIF + IGALSLIAAILTAVRLYRTKKNAASNDNNSDVQDYDFRDVETK" + gene complement(3002933..3004267) + /locus_tag="Ccel_2483" + CDS complement(3002933..3004267) + /locus_tag="Ccel_2483" + /inference="protein motif:PFAM:PF00070" + /note="PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; pyridine nucleotide-disulphide + oxidoreductase dimerisation region; + KEGG: tme:Tmel_0141 FAD-dependent pyridine + nucleotide-disulphide oxidoreductase" + /codon_start=1 + /transl_table=11 + /product="FAD-dependent pyridine nucleotide-disulphide + oxidoreductase" + /protein_id="ACL76811.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR004099" + /db_xref="InterPro:IPR013027" + /translation="MKIVVIGCTHAGTAAVNNMVKLYPGSEITVYEKNDNISFLSCGI + ALYVGGVVKDPESLFYSSPEKLREMGVTTCMRHKVVDIDMDKKALSVKNMETGSIFED + SYDKLIISSGSWPIIPNIEGIELENILPAKNYYHSNEIVSKAKSAQSIVVVGAGYIGV + ELAEAFALGGKNVTLIDTGKRVLNKYFDKEFTDIAEAKMKSKGINLALGETVTKFIGN + QNKIQSVRTDKSEYKADMAVLCIGFRPSTDLFKNKLDMLPNGAIIVDEYMQTSGKDIF + AAGDCCASIYNPAGVRQYIPLATNAVRMGTLAALNLDKPAVRYMGTQGTSAIKIYDLN + CAVTGLTQCTADFYNIDIESVTIRENYRPEFMPDYEEVLLKVIYDRKSREILGAQIMS + KADLTQSVNTLSLAIQKKLTIDELAFIDFFFQPNYNKPWNFLNMAGLKAQEK" + gene complement(3004403..3004795) + /locus_tag="Ccel_2484" + CDS complement(3004403..3004795) + /locus_tag="Ccel_2484" + /inference="protein motif:TFAM:TIGR02481" + /note="TIGRFAM: hemerythrin-like metal-binding protein; + PFAM: Hemerythrin HHE cation binding domain protein; + KEGG: swo:Swol_2168 iron-binding protein, hemerythrin" + /codon_start=1 + /transl_table=11 + /product="hemerythrin-like metal-binding protein" + /protein_id="ACL76812.1" + /db_xref="InterPro:IPR012312" + /db_xref="InterPro:IPR012827" + /db_xref="InterPro:IPR016131" + /translation="MIEWRDEFILGIEKIDEQHKKLFQIASEIYEATKNQLITDKYDE + IVRLITELKDYTVFHFTYEEEYMHSIGYRKLLSHKVEHHDFIEKISNTDYSRIDKDQD + QYLMELLDFTVEWIANHIMKTDKAYTIK" + gene 3005093..3006043 + /locus_tag="Ccel_2485" + CDS 3005093..3006043 + /locus_tag="Ccel_2485" + /inference="protein motif:TFAM:TIGR01771" + /note="TIGRFAM: L-lactate dehydrogenase; + PFAM: Lactate/malate dehydrogenase; + KEGG: cth:Cthe_1053 L-lactate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="L-lactate dehydrogenase" + /protein_id="ACL76813.1" + /db_xref="InterPro:IPR001236" + /db_xref="InterPro:IPR001557" + /db_xref="InterPro:IPR011304" + /translation="MKNKSINKIVIVGTGFVGSTTAYTLMVSGLVSEIVLIDRNTSKA + EGEAMDMNHGMPFVRPVRIYKGDYPDCKGADIVVITGGANQKPGETRIDLVNKNTEVF + KDIVGNIIKYNTDCILLVVTNPVDILTYVTYKLSGFPKNRVIGSGTVLDTARFKYMLG + EHMGVDPRNVHAYIIGEHGDTEVPTWSLASIAGIPMDAYCKECKSCDAENFKSETFDK + VKNAAYEIIDRKNATYYAVALAVRRIVEAIVRNENSILTVSSLFEGEYGLNDICLSIP + SQVNSEGVSRILNIPLSSEETGLLNKSAQALKQVISGLNL" + gene complement(3006098..3007159) + /locus_tag="Ccel_2486" + CDS complement(3006098..3007159) + /locus_tag="Ccel_2486" + /inference="protein motif:PFAM:PF01761" + /note="PFAM: iron-containing alcohol dehydrogenase; + 3-dehydroquinate synthase; + KEGG: cbe:Cbei_4092 3-dehydroquinate synthase" + /codon_start=1 + /transl_table=11 + /product="3-dehydroquinate synthase" + /protein_id="ACL76814.1" + /db_xref="InterPro:IPR001670" + /db_xref="InterPro:IPR002658" + /db_xref="InterPro:IPR008271" + /translation="MTYVHRIEIPSILEVSNNILGSVGAHIERAGISNVVVLFGEGIR + DLFGEKILDSIKSRKSLAVLETYDYDDIKLENLMLKAFTIPSKTDAVVGVGGGKVLDA + AKYIAFLNKLPFISIPTSTSNDGFSSSGCSLIINGRRTSVHASMPFGILVDLDVLKNA + PMKFIYSGLGDIISKITAVYDWYFEERNNAAKVDDFAAMIAKKSVNSIVRMPYTQVTE + NFFLKEMVDSLTMSGIAMQIADSSAPASGSEHLISHALDKLLETPQLHGIQVGIATYL + MSRVQEHRYQRVVKFLTDTGFINFVETLKMKADDFEKAIDMAHTIKPNRYTYLHVPEN + REKAKQLLRSDDVLKRILV" + gene complement(3007194..3007853) + /locus_tag="Ccel_2487" + CDS complement(3007194..3007853) + /locus_tag="Ccel_2487" + /inference="protein motif:TFAM:TIGR01489" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IB + (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane + phosphatase; + KEGG: cac:CAC1625 phosphoserine phosphatase family + protein" + /codon_start=1 + /transl_table=11 + /product="2,3-diketo-5-methylthio-1-phosphopentane + phosphatase" + /protein_id="ACL76815.1" + /db_xref="InterPro:IPR006383" + /db_xref="InterPro:IPR006384" + /translation="MKKFAFVSDFDGTLTDRDFYHIVMDKYLKDWAWNYYEEWKKTKK + INVDFLNKIFGAMDRSEEEILQDILELPLDPYAINFIKMVENNGGDFFILSAGTSYYI + NKLLEHFKIKNVTVISMEGRYNNRGIEIMPDAKSEFYSEVWGIDKQKVILSLKEKYEK + VYFAGDSEPDIGAAKAANCAFARYSLRECLEKEKVPYIAFKHFDEIAKYLVRQKILTK + I" + gene 3008046..3009743 + /locus_tag="Ccel_2488" + CDS 3008046..3009743 + /locus_tag="Ccel_2488" + /inference="protein motif:PFAM:PF00270" + /note="PFAM: helicase domain protein; DbpA RNA-binding + domain protein; DEAD/DEAH box helicase domain protein; + SMART: DEAD-like helicases; + KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase" + /codon_start=1 + /transl_table=11 + /product="DEAD/DEAH box helicase domain protein" + /protein_id="ACL76816.1" + /db_xref="InterPro:IPR000629" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR005580" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014014" + /db_xref="InterPro:IPR014021" + /translation="MKNLSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDL + IGQAQTGTGKTCAFGIPAVEKIDPQIDSIQVLVLSPTRELAIQSCEELRNVLKYKDGI + RILPVYGGQPIDRQIMALKKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEML + NMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSI + EQYYLEVKESAKLEVLSRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGD + MRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRT + GRAGRTGKAFTFIYGREMYKLRDIQRYTKSTIIPMKPPSLNEVEEKKMSNILKALKEN + LKDESVSKFASHIERFIDTINNESEEHDDNFVSSLDIAGALLKMYGEQSGNLPSVVNE + IDNAVEPGSSKDMVRLFINIGSDSKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFV + EVPKEFAPEVLKSMKNYTIKGKRINIEKSNARKKSGRGSSFNRSTPFNRRSPKKSKA" + gene complement(3010171..3015156) + /locus_tag="Ccel_2489" + CDS complement(3010171..3015156) + /locus_tag="Ccel_2489" + /inference="protein motif:PFAM:PF03160" + /note="PFAM: S-layer domain protein; Na-Ca + exchanger/integrin-beta4; + KEGG: cyt:cce_5280 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Na-Ca exchanger/integrin-beta4" + /protein_id="ACL76817.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR003644" + /db_xref="InterPro:IPR017868" + /translation="MSKTVKRISMVICVLFFSVLLAYNTGYVYAEAPQDQNFDSVAAG + SSSGAYRVGELNFTTDTGIINVRGWDALSYEFGYGRTINGFSGMAMSNDPDLNTSPTY + FAFESAIERTFKLESLYALITDVGSSTKVDIKGYNGLFERVHVDGIDFTKPGTTEYGD + VTYTNNVYNSTDGEYGGFLFFGDSWYDINRVVITDTDTNQPLYISLDSLDFSNLTDLS + IVDAPDTTEGQNATFRVNLTKAYTHDITLDYSINPQSATADDFNTPALNGTITIPSNA + TYGEIVVPIKDDTDRELAEDFKVTISNPSVGGIVDGEATCTIKDNDSPPKVSLSIDKS + SIGENGGSAKITATLSNKTYENVTVNLDFSGAVAGTDFNAPASISIPANSLSNSVNIT + SLDDDIYSDGDKNVTVDISSVDKGDKGTFIPPKLTITDDETEPKVNLSITPGSISENG + IDVAMVKATLTNKSSKDVTVKLAFSGAVKDKDFTVLSDTITIPSKQTVGSVQIKGIPN + NKFNNNKVLTTSISDADVTNGSTGDIKSVPLTITNIDPKPKVTIEPVEFNENDSATKK + AAFIVSLSQASDEYITVDYTTSDGSAKSPKDYTSASGTLTIAKGETSGTIEIDVLNDT + LDEYDENFSLTINNPVGAELGTSSSVKCTIKDDDAAPDIVISNAAVDEVDLGNNTKLI + FDVKLSAESEKTVTVNYSTADGTATQGLDYTATNGTLIFSPGETGPQQIQVTVLGDDL + LEPSETVSLNLTATNANKPDYTATGTIKDNDKATISINDASVTEGPAKNIVFKISLSK + PSSQSVTVKFRTKDGSAVLGEDYVQQEGTVTFAKGDFGDKTVTIGVNDDEIYEGVEAF + YVELYDLSDSTIEMGKATGTGTINDDESKPLISVENITVNEGNSGKTTASFEISLSTA + SANDIYVNYATLEGTAKDGNDFTAATGNLKIPAGKKSGMINVEVAGDTVYEDNETFSL + MLSNPSAGAEINPLKGTAVCTINDNDSAPSVTFEQNKVKVAEGDSGITQMVFNVTLSA + GCEKTVYVNFATEDGTATIADNDYTPLSGKLEFAPGQTSKSIIVNISGDKTGEPDESY + FVTLKLDTGDIKAEGIIQDDDKAFIKMFKKKDGSEISNGNTVNFEDTKTGKESELEFT + ISNTGNSDLTEDGINKLISVAGSDFTIKKEVVSPIVGKSSTTFIIVFKPSSTGTKTAE + ITITGKDAANSPFKFKITGTGTKEGTSGGSTTTPETPLRETIDINVGDRSLKNISVDV + HKENNTKTTTVNLDETEVQKTLSEIKKTEPEKEKKVIVPIINNSDRVIGELKASTLQA + MAEMDAILEIRTENAVYTLPANNINIGEIVTKLGGKPELKDILVKVTITKASDDKLDR + IKASAANKGFEVKGNPAEFEISFVNAGREVTVSSFNNYVARTVAIPDGIDPKKITTGV + VYNADGLFSHVPTAVNIMGNRYYAKINSLTNSTYALIYNPLSFKDVEEHWSKDYVNDA + GSRLIVSGTGNGNFTPDKAITRAEFAVMIVKALGLKGSQFANNFTDVGKDNPYYSFIC + TAYQYGIITGYTNGKFGPNDLITREQSMTMISKAMKIAGMDTSSTNADNLNNKFSDSG + VISKWARNGAAICVNSGLFVGNKGKLSPKNNVTRAESATVLIKLLKNAHLI" + gene complement(3015225..3016571) + /locus_tag="Ccel_2490" + CDS complement(3015225..3016571) + /locus_tag="Ccel_2490" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: gur:Gura_0755 coagulation factor 5/8 type + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76818.1" + /translation="MSNTALTGLVSASSYIAPFEAKRAVDGIIKPVNRWVGEVPCTLN + FMPDKLYCVNRWVVNGMPSVGWDPQQYHLLTYYLQGSNDSSTWVTLDIVDNTNTGTIS + YSSDRTFVPTAAYRYYRVNVTRGLKCNPNIASISNFQLFSVDPTSPYLSSLTMNSGTL + TPAFDKTTLSYTATVDYGVTSIIVTPTAETPTAYGQNAVIKVNGVVTNSGTGASVNLA + VGVNTITIDVTSAVGYLTQRYTLTVTRLNSNKLTSLSVLNGTTVLPIVPAFVKNTYGY + TVEVDNTVQSVMLNATCENPASTLTINGGAAVSGQPYGPITLQTTGDTTVNVIVTTAT + MAPQTYTVTIKRKEDLTLFSLSIKNGKTSLILQPNFSSTQYQYSTSVSGTTSLSIIPT + ASNTNGVNITVNGNPVASGSSYTAANLKIGANTINIDVISKNTGNKNTYICNITIS" + gene 3016759..3017001 + /locus_tag="Ccel_2491" + CDS 3016759..3017001 + /locus_tag="Ccel_2491" + /inference="protein motif:PFAM:PF07484" + /note="PFAM: Tail Collar domain protein; + KEGG: pna:Pnap_4722 phage tail collar domain protein" + /codon_start=1 + /transl_table=11 + /product="Tail Collar domain protein" + /protein_id="ACL76819.1" + /db_xref="InterPro:IPR011083" + /translation="METMLGEIELFPFTFVPQGWLLCNGQTLSITQNQALYSLLGITY + GGDGKTTFALPNLLGTEPVPNTKYFIAREGFYPERN" + gene 3017095..3017349 + /locus_tag="Ccel_2492" + CDS 3017095..3017349 + /locus_tag="Ccel_2492" + /inference="protein motif:PFAM:PF07484" + /note="PFAM: Tail Collar domain protein; + KEGG: gur:Gura_0754 phage tail collar domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="Tail Collar domain protein" + /protein_id="ACL76820.1" + /db_xref="InterPro:IPR011083" + /translation="MDFPFIGQIQLFALGFAPVDWQLCNGAVFQIAGNEALYSLIGNK + FGGTPGQNFAVPNLLKASAYQIKRPMAYYISMNGMYPQPS" + gene 3017405..3017650 + /locus_tag="Ccel_2493" + CDS 3017405..3017650 + /locus_tag="Ccel_2493" + /inference="protein motif:PFAM:PF07484" + /note="PFAM: Tail Collar domain protein; + KEGG: pna:Pnap_4722 phage tail collar domain protein" + /codon_start=1 + /transl_table=11 + /product="Tail Collar domain protein" + /protein_id="ACL76821.1" + /db_xref="InterPro:IPR011083" + /translation="MDCPILGMIKLFPFSYIPYGWAACNGSIINIQSNAALYSLLGTQ + FGGNGSTTFGLPDLRGAELDSNTVYCIAIQGIYPQRQ" + gene 3017769..3018368 + /locus_tag="Ccel_2494" + CDS 3017769..3018368 + /locus_tag="Ccel_2494" + /inference="protein motif:PFAM:PF00881" + /note="PFAM: nitroreductase; + KEGG: cbl:CLK_1643 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="nitroreductase" + /protein_id="ACL76822.1" + /db_xref="InterPro:IPR000415" + /translation="MSKNFYAAIKDRRTYYGIDKQIPVSDEKVQDIIKESVLHTPSAF + NSQSARVVLLLGASHDKLWNITKDTLRKVISPENFSATEQKINSFRSGYGTVLFFEDN + SVIESLQQQYATYKDNFPVWAQQSNGMLQYVIWTALEMEGIGASLQHYNPLIDDEVRS + EWKIPLNWKLIAQMPFGKPTASPDEKQFQPIESRFKVFR" + gene complement(3018394..3018948) + /locus_tag="Ccel_2495" + CDS complement(3018394..3018948) + /locus_tag="Ccel_2495" + /inference="protein motif:PFAM:PF01814" + /note="PFAM: Hemerythrin HHE cation binding domain + protein; + KEGG: cbf:CLI_1733 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Hemerythrin HHE cation binding domain protein" + /protein_id="ACL76823.1" + /db_xref="InterPro:IPR012312" + /translation="MDCIDLMIDEHKNIKRMLKVIRAYCYKILKGEKVKYEDLFTIID + FVRNYSDAHHHGKEEKLLFDRMEKEMGPAAQKLIRHGMLVEHDLGRLHMQELEAAVKR + VMEGDDESRLDIIANAVSYTHLLYRHIEKEDGVVYKFARNNLTKETMEILNQKCEKAE + KEALEQHLQEKYLKLIEEFEKKVL" + gene complement(3018962..3019591) + /locus_tag="Ccel_2496" + CDS complement(3018962..3019591) + /locus_tag="Ccel_2496" + /inference="similar to AA sequence:KEGG:CLD_2900" + /note="KEGG: cbb:CLD_2900 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76824.1" + /translation="MSLFLGKIHYWLYNKIIWYEKIEKDIINWAQDKELPVGTWVQDN + NERHGPPLGTEPLEQLIDTSNIHGWLQARIESAELRQAALVTQVLNRNMDFKSDLIGI + YKNQGKAAAGEYKGDSAVPEDIFNALNDYILEGMPCDRVNEIVSSNDNEFVWQTSICL + HTPYWQKVHGNVSNFYELREAWVKSFVEGLNPDFTYVRSAENTHKISHK" + gene 3019726..3020535 + /locus_tag="Ccel_2497" + CDS 3019726..3020535 + /locus_tag="Ccel_2497" + /inference="protein motif:PFAM:PF00561" + /note="PFAM: alpha/beta hydrolase fold; + KEGG: cbk:CLL_A2130 alpha/beta superfamily hydrolase" + /codon_start=1 + /transl_table=11 + /product="alpha/beta hydrolase fold protein" + /protein_id="ACL76825.1" + /db_xref="InterPro:IPR000073" + /db_xref="InterPro:IPR000639" + /db_xref="InterPro:IPR003089" + /translation="MEYTIKTEQDVSIFINDINPYGKKTIFFVHGWPLSHRAFEYQFN + VLPKMGFRCIGMDTRGFGNSSKPFWGYDYNRLAEDVRCVIDTMKLRNFVLAGHSMGGA + TVIRYMSRFNGYGVSKLALFAAAAPSLTMRPDFPYGLPKEEITKIIQSVYNNRPQMLL + DTAPMFFHNPITKALSDWFFQLGFEAASWATAECAKTFRDESLFTDLPRIQVPTLILH + GIHDRVCLFPLAEAMKRGIRNSRLVPFEHSGHSLFFEEKNKFNMELVRFAE" + gene 3020715..3022223 + /locus_tag="Ccel_2498" + CDS 3020715..3022223 + /locus_tag="Ccel_2498" + /inference="protein motif:PFAM:PF00209" + /note="PFAM: sodium:neurotransmitter symporter; + KEGG: cbt:CLH_2732 sodium/proline symporter" + /codon_start=1 + /transl_table=11 + /product="sodium:neurotransmitter symporter" + /protein_id="ACL76826.1" + /db_xref="InterPro:IPR000175" + /translation="MTQKRDQWGSKAGFILAAIGSAVGLGNIWRYPYVLYSNGGGAFL + IPYFFAILTAGIPLMIMEYGLGHKFKGSPPLAFARANKRWEWLGWWPSINSFIILTYY + TLILSWAINYLYFSITQAWGDDTNSFFFKDFLKMTDSPFKLGGFVWPVFSGITIIWLL + NWFVCYKGVSGGIEKLNKILLPTLVVAMIIIVIRGVTLPGASLGLNKLFSPDWSKVLD + PKVWIAAYGQVFFSLSLAMGIMITYSSYLPKKTDINNSAFMTAFANSGFEFLSAIGVF + AILGYMASTQGVGVDKVASQGIGLAFIAFPKVFTVMGGIGKLFGVLFFICLVFAGITS + SISLVEASSSALIDKTGAGRKKVVSLVCLVGYSISIVYSTGAGLYFLDIIDNFINSYG + IVTVGLLEAITIGWLFGASKIREHTNAISYFSIGKWWNVMVKFITPLILTFMIISNIV + NEIIKPYGGYSQKALIAFGWSVVILGIVLSLILCTRPWKDRNITSYKSEEVK" + gene 3022224..3022328 + /locus_tag="Ccel_2499" + CDS 3022224..3022328 + /locus_tag="Ccel_2499" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76827.1" + /translation="MTATSIAFFLFGAIFLWGGLAVTIMIAVKNETKK" + gene complement(3022362..3022592) + /locus_tag="Ccel_2500" + CDS complement(3022362..3022592) + /locus_tag="Ccel_2500" + /inference="protein motif:TFAM:TIGR03090" + /note="TIGRFAM: small, acid-soluble spore protein tlp; + KEGG: cbe:Cbei_4610 small acid-soluble spore protein Tlp" + /codon_start=1 + /transl_table=11 + /product="small, acid-soluble spore protein tlp" + /protein_id="ACL76828.1" + /db_xref="InterPro:IPR017524" + /translation="MNKPKPDDRSDNVERIQANINHTIRNMEAAEEMIAKTDDRKMAK + TLEEKNDRRRDALEGFRAEIRDEALDQKRREE" + gene complement(3022623..3022883) + /locus_tag="Ccel_2501" + CDS complement(3022623..3022883) + /locus_tag="Ccel_2501" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76829.1" + /translation="MIISSYDEAKFRSMNADAIDNHISATVKTGQDDPGRLKSFVESL + NELNHDSGIVVFVKAARHKAQEVKSVMEQSGAVEIKMDDDKD" + gene 3023211..3024752 + /locus_tag="Ccel_2502" + CDS 3023211..3024752 + /locus_tag="Ccel_2502" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_0745 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76830.1" + /translation="MKYIADKMKFLAFTFLSLFFSFMWLLTLLLRAVSTPLPKLISQK + PLVLIGLAISEFLILLGIYYIGQFLLRFNEKKTILAILAVYIIVQVIYILMFPVNAYE + DAAIVEGFAREFLNGKFSSLQIGNYLGYYPNNIGITVFFAFLYLFLPDTLLTLRFCNV + IFSTLTAWLTYKLYIELFPNERNSSVGVLLLTVCFLPAIILNNLTYGDIISTSLCSAG + LLYASKFVKTSLLKYAVYTALLLMLGNFIRSVALLFLLAVLLYWALNSKLFRCAIDMK + RVIAGTVIAVLAFSLPLKIFSFVGFKSGIIQEPVGIHANPVWRWINIGFPSDGKLGYW + DGGRNTSIFVSRYNCNPKLASKFFIHDIIDKYRNIGKKNTIKGYTKKTFWTWTEGTYN + VNFYGLSQALEPENFKLYDTPLIKYAEPADKTFRESIDWYLHTYNWITLALMAFYLGN + CIKRKDFSTELLIYTILFYLGFYFFWEVKSRYLFGLYPILIILSYNSIGLIVKKGQQK + FFHRP" + gene complement(3024775..3025899) + /locus_tag="Ccel_2503" + CDS complement(3024775..3025899) + /locus_tag="Ccel_2503" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: cth:Cthe_0236 aldo/keto reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL76831.1" + /db_xref="InterPro:IPR001395" + /db_xref="InterPro:IPR017900" + /translation="MQYRKLGNTGINISTLGFGAMRLPQTNIDGKMVFDTEESIRMIH + RAFELGVNYIDTAPYYCEKQSEEIVGKAIKGWRDKIYLSTKNPIEDASGDHYRERLEN + SLKKLDTDYIDFYHMWGISLESFEQKINVKDGPLSAALKAKDEGLIKHLSFSFHDKAE + NMIKLIDTGYFETVLCQYNMLDRSNEAGIVHAHEKGLGVVIMGPIGGGRLGAPSEVIN + KLIPGGAKSSAELALRFVISNPNVTCALSGMGSMAMVEENVTVASNGQQLTDDEINAI + NEAMEQNKKLSELYCTGCNYCMPCPKEVNIPKIFEYMNYHRVYRLTDYAKAEYKSIGT + NEWVKGNRADACVDCGICEQKCPQKIQIRKQLKESAKELA" + gene complement(3025973..3026902) + /locus_tag="Ccel_2504" + CDS complement(3025973..3026902) + /locus_tag="Ccel_2504" + /inference="similar to AA sequence:KEGG:CBO0408" + /note="KEGG: cbo:CBO0408 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76832.1" + /translation="MTEMEYVIHSIETNLFFLRIIKEHLIFTIAALMPRDQGMVPELE + KTINNLEELLKETVLMANGVVPTQNLMFGDIVTPYTLKAEMVTQYYTGIKINTNITQM + EVSLLTSIRPVSKTMPPKAVSMLNQRIMALLEKIIQTKKMVLSNVLSCKMFTTIYPLM + LDHVTREAEHYLQLLQRLESSHGLLETPRDAAGMEAFWDNIMGEHGKFIRGLLDPSEE + NLIQQANEFVNIFTELTNTAKMAINQLELLPQVTSRSVEATTDIKNFKEQGTEGILDC + KIRSIILPLLSDHVLREANHFLKELRMVQKIIK" + gene complement(3027052..3028884) + /locus_tag="Ccel_2505" + CDS complement(3027052..3028884) + /locus_tag="Ccel_2505" + /inference="protein motif:TFAM:TIGR00254" + /note="KEGG: cbe:Cbei_4617 diguanylate cyclase; + TIGRFAM: diguanylate cyclase; + PFAM: GGDEF domain containing protein; metal-dependent + phosphohydrolase HD sub domain; + SMART: metal-dependent phosphohydrolase HD region" + /codon_start=1 + /transl_table=11 + /product="diguanylate cyclase and metal dependent + phosphohydrolase" + /protein_id="ACL76833.1" + /db_xref="InterPro:IPR000160" + /db_xref="InterPro:IPR003607" + /db_xref="InterPro:IPR006674" + /translation="MYEDNAQFNVASSIEKGIELLMELNQEYANLTFKVKSLENRLAA + VSVLIDINEYMGNILHFQDLVSYLKDVIAGVLGLDCTIYTPDDIAKMKMDPSFLPNTD + LYIQNLKAQGKELFGYNSGSLGVLCISKRDLYGYLVIHHELVDMIDEEKKGLLQLIKG + QICIYFENAMLFSKLRDSAEHDGLTGLYNRLYLSQLLDNWEESMVGINGAIILDLDNF + KNINDTYGHLAGDNVIRMLVGVIKNAINNLPVYAIRYGGEEFLLLTKGIGSKEIVEIA + ETIRREFNTLKYEESSLSVSLGVSVLGESCKVIDYMELIRSADDALYTAKRIGKNVVV + TSDEDLQLFESVSFNIAKNLSRYNRFNVIGEIYRVNFKANRLLSIEEYSKLKYCITSC + FREYDGIYGSVSLSFVILTDNQIPQNLMEQKIREALVSNGLDYVNFEVYSNTDAYREV + MLHSKRVAAISMALAEAYGLPADECEKVRLAAANHDIGKLYVNPKILNKPGKLTPEEY + EKIKMHAFYSYQYAKSRENLKFVAEYIFYHHEYIDGSGYFKKKDLPLYSQIIVLADIF + DALSENRCYRAAFSKDEAIQIMEGEKHKFNPELFELLKQIANNI" + gene 3029187..3029387 + /locus_tag="Ccel_2506" + CDS 3029187..3029387 + /locus_tag="Ccel_2506" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76834.1" + /translation="MIIRVPPNKNMTEGSLIALTKNDVFIGYAEIIISTDEALMLSVD + NKAVKTFNELFGEQIPFTIDFF" + gene complement(3029384..3030052) + /locus_tag="Ccel_2507" + CDS complement(3029384..3030052) + /locus_tag="Ccel_2507" + /inference="protein motif:PFAM:PF01928" + /note="PFAM: adenylate cyclase; + KEGG: mac:MA0084 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="adenylate cyclase" + /protein_id="ACL76835.1" + /db_xref="InterPro:IPR008172" + /translation="MKKGKNIEVEKKYVIGSENGVLFEQVRMGVSTFLKNYKADPVKV + KESKDDYFDTDGGDLYRQNVILRIRTDSKRKSITIKKDIPNKTCNSSDGQLARFEYEK + EIISENLDDNWALMELYCKEFTEMFKPKDFHKVIRVEKNREKILFTKNEFSFEVAFDS + VTYVNLKNNVSKKEYQIEIELKSDYSHRGRLKTVTDELEKKYSFLKPNFDSKFKRAVD + LTQI" + gene complement(3030049..3031599) + /locus_tag="Ccel_2508" + CDS complement(3030049..3031599) + /locus_tag="Ccel_2508" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76836.1" + /translation="MGKALDISLYKNGFGYQNVDCIQSPIAAAAGYFNHDNYFYYCFL + HSIAGNFENHSQQDISVYSNKILCKMGLRLEKIDCSGCTPEDVISMAAEEILFGRPII + MIVKYNSLFYNMYYKNMGFRLNHGLLVNEFNESNKTFCIKDQFYRDILDTYKNAFFPL + HITFDMLKNIWLDSNKQFRSQSATCADSIYSMYQDEEVELDTNKAINIALSIMDGKSE + LINLIQNFDGTKDFDSNIVFNRLRFCGCLEPIFHVLEEQCVHKSFDLVHLQKTKKKIE + DIRSKVINALGKASRRCEKISKERKDDLCKIAAEGDALLLNLMKTLIVSESEKKLINH + FVDITEYYNNQAFEESFRDDSRADITGEGTHYIFQDVVVNEEWKKGNFSFNYSYLPDR + SDNISCNGQVVCIPQINAQYISILGCSEFGSYNEKIVVEYSDGSKRVITADFSDFFQP + PIFGERAYWTGAAAERRNGRTRYHSFNARLFAKRYRIEPGCVVKIHLPNKRNVHIFAL + TLSDEVFL" + gene complement(3031629..3031877) + /locus_tag="Ccel_2509" + CDS complement(3031629..3031877) + /locus_tag="Ccel_2509" + /inference="protein motif:PFAM:PF00550" + /note="PFAM: phosphopantetheine-binding; + KEGG: oan:Oant_1477 acyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="phosphopantetheine-binding" + /protein_id="ACL76837.1" + /db_xref="InterPro:IPR006163" + /translation="MEIKEQIVSVIASVLNIEPGQINCVSEDENLNRVGVDSVNFIEI + IIGLEDKLNIVFDDEELLLDNLNTLKKLEKVISQKLED" + gene complement(3031900..3033252) + /locus_tag="Ccel_2510" + CDS complement(3031900..3033252) + /locus_tag="Ccel_2510" + /inference="protein motif:PFAM:PF02655" + /note="PFAM: protein of unknown function DUF201; + KEGG: saq:Sare_0485 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF201" + /protein_id="ACL76838.1" + /db_xref="InterPro:IPR003806" + /db_xref="InterPro:IPR011761" + /translation="MENEFNLIRLLTTQRNKGTIVWLCNIGAEKYWSSLSTWVVNRQE + DIAVNRMEEMNLLICREQDIIILREMPQEDYLEDLRRMGFTIPTILCPGKSDLLTPIS + ELVLEDDVLLNKLKEAAERNKDLFFVPYGVTHLEEEIAEKTGMRIIGAPSQINAKIND + KIFNREISEKLGLTVCEGRVCSSAEEIREEYEKLTNNKPFFSKVIIKEPKGASGKGLY + IIDSREKLESSLRLITRLSRGRTDCKWLVEGWYSKSADVNYQIYVSPGGEVDIFSIKQ + QLLKGTVYIGSKMPPELEKWVLDSYVEYGRKIGRYLYEIGFTGVAGIDSIITEQGMCI + PIIEINGRFTLSTYISFVDRILKDKKVLSRYFRLTPEQPLNYTDICSQLDKKGIMINP + DNNEGIFIYTSGTLPYKLYNGTDCCVGRAFALIVSDSWEKVNTYNSELERIMESYSKL + " + gene complement(3033258..3034508) + /locus_tag="Ccel_2511" + CDS complement(3033258..3034508) + /locus_tag="Ccel_2511" + /inference="protein motif:PFAM:PF00278" + /note="PFAM: Orn/DAP/Arg decarboxylase 2; + KEGG: aeh:Mlg_0126 Orn/DAP/Arg decarboxylase 2" + /codon_start=1 + /transl_table=11 + /product="Orn/DAP/Arg decarboxylase 2" + /protein_id="ACL76839.1" + /db_xref="InterPro:IPR000183" + /db_xref="InterPro:IPR002986" + /translation="MNDKILNDIVNKYGTPVYAYDTEKIMSQYALLKNSLPQEIGIFY + SMKANPLLGICQLFKKLGSGIETASSGELHTALCAGFPPEKIIFTSPGKTYDELKYAV + ETGIYSINIESLEEAEVINEIADKKGRVVDISIRINPDFDIAGSGIKMSGVASQFGID + QIRLDSVLNELKALQNLNIMGIHIYTGTQALNAHSIVQSMEQIVKLALDTSEKYVFKL + KFLNLGGGFGVPYFKDDSTLDMDILRNEFSEMWNKYKDRLFNTQVFVESGRFLMAESG + TYLTKILYRKECKGRKYLVCDGGSNQHAASAFLGRHIRNNFPIQILNKSSNEEQVNVV + GPLCTPTDVIGQNVMLPEAVPGDIVAVLKSGAYGVTQSPGLFLSHPLPAEVQYYEGKT + YILRERWGKEDFMLRQKPMDKNLL" + gene complement(3034518..3035228) + /locus_tag="Ccel_2512" + CDS complement(3034518..3035228) + /locus_tag="Ccel_2512" + /inference="protein motif:PFAM:PF00975" + /note="PFAM: Thioesterase; + KEGG: bcz:BCZK1713 thioesterase" + /codon_start=1 + /transl_table=11 + /product="Thioesterase" + /protein_id="ACL76840.1" + /db_xref="InterPro:IPR001031" + /db_xref="InterPro:IPR013838" + /translation="MREIKLFCLPYAGGSADIYARWKNYLSSSIKLCLVEFPGRAKRT + RDPFYKSIKEAVEDILSHVECEIQDSEYAVFGHSMGSVITYEMICRLSEKGAKLPKHV + FFSGRYPPCVKKQGKNMHLLTDNELIQQAVSLGGIPEKILKYTRLVENAINTLRADYT + ILEEYGHNPEIYKFDIDISVLFGVNDQLSAAEGMKGWEQYTKKSCTFYTFDGGHFYLH + DRAKEIVKIINNTLAVTE" + gene complement(3035355..3036047) + /locus_tag="Ccel_2513" + CDS complement(3035355..3036047) + /locus_tag="Ccel_2513" + /inference="protein motif:COG:COG0125" + /note="KEGG: sai:Saci_2019 thymidylate kinase" + /codon_start=1 + /transl_table=11 + /product="Thymidylate kinase-like protein" + /protein_id="ACL76841.1" + /translation="MQQVKSTSSVKGMLIVFEGISGCGKSESVEALRKYLSDKGYKTS + VLEWNSNKIIRKITKAIDSIKLLTPGVYSFLQWIGFLIDYFFKVVPLLKKNYILIADR + YIYTGLIRDSVNGAGRIIGSFLHRIVKKPAMVFFLDVSPEVCDERIKKRGKALFHTNR + LIWENKLLKNKELYYLNKLRREYLLLFNSKTLLNETNIISVNEDTETVVKCVNDYISG + RREIYEYFKPFN" + gene complement(3036133..3037242) + /locus_tag="Ccel_2514" + CDS complement(3036133..3037242) + /locus_tag="Ccel_2514" + /inference="similar to AA sequence:KEGG:CA_P0137" + /note="KEGG: cac:CA_P0137 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76842.1" + /translation="MENIKVTVLCSGFGLGLYIPGLLIDRRLREKGVSTEIEVFENLI + SKNKRNAIQKSRKAYHSNFAVALMSARMPMDIRQSIDNELADELMKCWAEENRRDFIV + LSGHWLHVIDEYRERMAPETVNAEILYVDCDLPPSWKSLQQYKPDYSFNYKEVWLYDF + EKKQIQFQIPISNEKPIPFMERPQRCIIHGGGWGMGTYQGKIPELQEKGLQLDIVLYD + IGEATRRREGDRCFMVDPSWRAWNKNKNGSYEFPPLAQIMPSEEPVFKNKEEYHELFD + VTKKARAIIGKPGAGTLMDSISSATPMIMLEPFGEHEEKNTQLWEQLGYGITYNMWKE + SDFSMEILRELHDNLVKGRKAALDYTESYKFRNSS" + gene complement(3037286..3038443) + /locus_tag="Ccel_2515" + CDS complement(3037286..3038443) + /locus_tag="Ccel_2515" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: plu:plu2412 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76843.1" + /translation="MKREEISKERQLVLLTAVEMNDSQGDELKKMLDGGIDWSEAIYQ + MITHRTLPMFRYNLKKFNLYDSMEKELQRLMDTQWAVFEERNNCYLEKLSEILKEFEK + YNLVVPVLKGNLLASIVYPSIESRIFNDLDMLMNLDDVGTVVKALEDLGYIQGNYDEE + KDVIVEVPRKQKVLHQMATHEIHQFLKLSDNKFAKLVEVDVNHDILWKGNCPYKVMTK + DLIQRAVPVEINSTKGYMLDYIDNIIQLSCHLYKEACLMIWIASLKDLKIYKFADLFM + YIRKFFDKIDWNLLVKRVKEYKLEKIVYYNFYYIELMFGEIVPQFVKDSLEPEDLSYL + DEYGIENKEPSKWPYDFFTRLFDVNRILNIDQSKATGMNRFLDAKFGEGQS" + gene complement(3038459..3039973) + /locus_tag="Ccel_2516" + CDS complement(3038459..3039973) + /locus_tag="Ccel_2516" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: nis:NIS_0535 long-chain fatty-acid-CoA ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL76844.1" + /db_xref="InterPro:IPR000873" + /translation="MKKSEYSPWNLFNESCDKYRDNILLIYNDNKYTYGQVYEKVLDF + CSLIEGLDFKIGGIYLPNCTEFITSMLGLNRKKKVFVSLSYQFKGDTLTDLINYTDVE + FLITDSKGYNSIEHSVEKMNIRTVLVLQENGAFEKHEFKKERRELTDIKGDTFGICFT + SGSTSRPKGIVLSNHAIVGNALAVAEHLGFTQDERTILPRSLAQASPISGDVLMAISR + GGGIILLNNVFHPAIFLKAVQEHKATNFYIVRTMLLQILEYSQLKNYDISSVKRVLIG + GMVNPMTIYRRAAETFPGARVFNAYGTSEASARVTFGEHEDVTTLPCVIGKPMRGCDI + KIYREDGSEAAVGETGELYITSDYMMDGYYNSPELTREIFGERGFRVRDLGYKDEQGR + FFVLSRNDDMIMQGGSRAYPIDIEEVLLKNPVVKESAVIGVDDEKLGQKIVAMVVLRE + GFQTEVKDIYKWCNIKLEDRKVPKEIFIIPEIPRNAIGKISKKDVKELYQSLKK" + gene complement(3039991..3041130) + /locus_tag="Ccel_2517" + CDS complement(3039991..3041130) + /locus_tag="Ccel_2517" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76845.1" + /translation="MIKQTDNIPRYFEPYVNDCFHNAYSAVLLHMGMNPNIILADYLS + FMYDCKNGYVGVNYFYRPNTTVEFTEEELNTSLEFVYLPPTTLYNQATVKNIDMRHKD + RVNINMYIEDRPDVAYQRLKELLNSGIPVVAVVDLFYMNYHRAYQKEHGLHCVIFTGY + NEEEGYYQIFDKYKLSSSDFDGNLPIDEVNLGRMSDNPLPGVNATQKRPIRNLWMEIS + SDNEFKVTEDKLLNIVNESCQRMKGQKEILGHKCGLDAIELFSKNLLEKKSERLDDEK + VYWYRVYLNGSLKNISRSRKRFSVFMKEISSLLPEQLITSLCVSLEESSKHWDICSSI + ALKLGIRKSLDMIDDLVNQLDIIRELENSIVERLEGYLQDKGLHK" + gene complement(3041156..3041407) + /locus_tag="Ccel_2518" + CDS complement(3041156..3041407) + /locus_tag="Ccel_2518" + /inference="protein motif:PFAM:PF00550" + /note="PFAM: phosphopantetheine-binding; + KEGG: trq:TRQ2_0267 acyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="phosphopantetheine-binding" + /protein_id="ACL76846.1" + /db_xref="InterPro:IPR006163" + /translation="MQKQEIESKVCEVVSRVAQFNNDNVVADSDLRDNYGVDSIVLVE + LLVEIEDIFGITFDSSSLTYETFSTVNSITDYIENVLNS" + gene complement(3041435..3043006) + /locus_tag="Ccel_2519" + CDS complement(3041435..3043006) + /locus_tag="Ccel_2519" + /inference="protein motif:PFAM:PF02872" + /note="PFAM: metallophosphoesterase; 5'-Nucleotidase + domain protein; + KEGG: afl:Aflv_2607 protein UshA precursor (two S-layer + domains; UDP-sugar hydrolase; 5'-nucleotidase)" + /codon_start=1 + /transl_table=11 + /product="5'-Nucleotidase domain protein" + /protein_id="ACL76847.1" + /db_xref="InterPro:IPR004843" + /db_xref="InterPro:IPR006179" + /db_xref="InterPro:IPR008334" + /translation="MKSYKNLIVIGVLIFGIAVFLVAKYVNFNDLLKSVGYYEEKISV + VSTADIHGHIIFDEEAGGYYSLDDVSVMMGMPLMKNLIDDIKEKNKNTLVLDSGDMFH + GTNEANINKAEGVVQVANLMGFDAMTPGNHDFNFGYDRLVQIKDELRFPILSANIYKD + GKPAFQEYKIVKVGGKKIGLFGMTEQNALINTNSRETKGVTLEDPVRIANKMVSTLKG + KVDAIVLISHLGDDIDRKVVKQVDGIDLILCGHHHFLYEKADKINNTYLVEAGGYSTH + VGLADMYFKDGKLVKVVWSSKRTKDKEKADPIVNKVAEKYHAVALESSKVVVGKTKEK + LDGFRSNVRSKETTLANLLCDAMRETAGADLALMNGGGIRESIPAGNINLYAIGKSLP + FVNSLVTIALKGENIYTAVERGVRLYPDGGSNGGFLQVSGIKYTFDASKPAGKRLVSI + TINGKPLDREKYYKVATNDYLYNGGDGYDELKEGKLLSKGELLKDVLAKYIKEKGDVS + AKIEGRIKVINERYK" + gene complement(3043025..3043864) + /locus_tag="Ccel_2520" + CDS complement(3043025..3043864) + /locus_tag="Ccel_2520" + /inference="protein motif:PFAM:PF06182" + /note="PFAM: protein of unknown function DUF990; + KEGG: cpy:Cphy_0980 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF990" + /protein_id="ACL76848.1" + /db_xref="InterPro:IPR010390" + /translation="MKEKALYSPLEMLVLLMKYAKLSIKSILEYKFDRVFITIAIFCR + EMISVVVMFLILTRFVRIKGWEYNQMFFLYSFLFLSYSVFVLFFAGMRDFDNMIYSGE + FDRFLTRPLGLMYQIIASKIDLSAALGHGIVGIILFVNTAFSVGINWNIKNIIYYIVI + LLTGAVIQASIFLFSACFSFWTYKVDNLRNLIFFNARRISGYPLSFYPGIIQKLLMFV + VPFAFVNFFPAQYFLRKSEMSSYWNGFLYMTPVVAVIMFLLVYAFWKKGVSRYSSTGT + AMN" + gene complement(3043868..3044656) + /locus_tag="Ccel_2521" + CDS complement(3043868..3044656) + /locus_tag="Ccel_2521" + /inference="protein motif:PFAM:PF06182" + /note="PFAM: protein of unknown function DUF990; + KEGG: cpy:Cphy_0979 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF990" + /protein_id="ACL76849.1" + /db_xref="InterPro:IPR010390" + /translation="MRAYVEFAKKAFQNNIAYRADCVAGIINAIIMIFVNICVWKAIY + EDEQAVAGVQFKMLITYVVLAFLMQCIYAMDEYRIENKVRSGSIGLDLLKPINFSGYT + FSYNVGILIFRVVMQLTPALIISIFLFKMLPPFSLTMFALFLVSMILGYLVLYCLNFI + VWISSFWFYWTFSLVTIKDAAVMILSGALLPLWFMPQAMVDFINLTPFASIYYVPITI + YLGQMPMEEIAFALIKQLIWALGLFIIGRLLWRSALKKLVVQGG" + gene complement(3044631..3045641) + /locus_tag="Ccel_2522" + CDS complement(3044631..3045641) + /locus_tag="Ccel_2522" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: sth:STH2664 ABC transporter ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76850.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MPFIEVNNLVKDYKLNVRKKGLLGSIQSLLVPEYKMKRAVDNIS + FSINKGEMVGFIGPNGAGKSTTVKMLTGILVPTSGSISIDGLCPYKERKRNAMRLGVV + FGQRTQLWWDLPVIDTFELLKYIYKIPDAKYKQNMELFNELLEINQFISQPVRQLSLG + QRMRADIAAALLHDPEIIFFDEPTIGLDVIAKEKVREFIRYINKEKGTTMLFTTHDMQ + DIEKTCQRMIIIDQGLTIYDGTVEEIKEKYGTNRTLQVDFSENVEKINIPGIQVIEEK + GSKKIFKFRKDEIQISSLINELTQRYSIVDLTVQEPEIEGIIREIYQGGIKFDESLCG + VR" + gene complement(3045857..3046399) + /locus_tag="Ccel_2523" + CDS complement(3045857..3046399) + /locus_tag="Ccel_2523" + /inference="protein motif:PFAM:PF00196" + /note="PFAM: regulatory protein LuxR; + KEGG: tex:Teth514_0348 regulatory protein, LuxR" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LuxR family" + /protein_id="ACL76851.1" + /db_xref="InterPro:IPR000792" + /translation="MNKKIEKIGIRVGMSFAERAIGTNAIALSMKTKEPVYTTPPHHY + CDLLREFYFYSVPLETKKREIGYLAICSLNEPVGFELEIIADLTAYKILNELKSNEIN + SVLPNKKECILNKKQLEILKLVAKGVPDKTIALEEGITINTVKYHKKSIYKKLEVECS + AQAVIKCLKLNLMSINEIDC" + gene complement(3046396..3046659) + /locus_tag="Ccel_2524" + CDS complement(3046396..3046659) + /locus_tag="Ccel_2524" + /inference="similar to AA sequence:KEGG:Teth514_0348" + /note="KEGG: tex:Teth514_0348 regulatory protein, LuxR" + /codon_start=1 + /transl_table=11 + /product="regulatory protein, LuxR" + /protein_id="ACL76852.1" + /translation="MNRLQPVEEILMSWRRCINSGLINSAAAVSTYISEDALQTALNA + SKPIISLFDEIWRELERLTANKSLVFLLTSPEGVLLKKSVAEN" + gene complement(3046982..3048115) + /locus_tag="Ccel_2525" + CDS complement(3046982..3048115) + /locus_tag="Ccel_2525" + /inference="protein motif:PFAM:PF00144" + /note="PFAM: beta-lactamase; + KEGG: cpy:Cphy_0866 beta-lactamase" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase" + /protein_id="ACL76853.1" + /db_xref="InterPro:IPR001466" + /translation="MNKAILKDYLDSLESKGVPGCDCVIFHKHKPVFRHTTGFADAGK + TKHLTSENLFWLFSATKLITCTAIMQLVEKGKVSLDAPVADYLPEYKHLNVKCGSEVV + PAKNTLTIRHLLSMQSGLNYNLQASSILKVLEDTEYEATTRQVIRALANEPLEFEPGT + HFLYSLSHDVLGAVIEEVSGQKFGEYLEEHILKPLGMKNTGFELTPDRKANMSEQFEY + DMDTMTSKPISLANCYKLSSKYESGGAGLLSTADDYILFLDAMCNDGVSADGYRVLTR + ESIDMMRKDQMNDISKKDFDEFGRIGYSYGLGVRTLVEKERSGVKSPLGEFGWDGAAG + AYALIDVKNRLAIFYVQHVRGCGYAYSDIHPKIRDLSYEMLDL" + gene complement(3048264..3050306) + /locus_tag="Ccel_2526" + CDS complement(3048264..3050306) + /locus_tag="Ccel_2526" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: bat:BAS3056 methyl-accepting chemotaxis protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76854.1" + /db_xref="InterPro:IPR000727" + /db_xref="InterPro:IPR004089" + /translation="MKIKSKIYIIFSALIITYLIEAIVFLGISNGILENNFNSLTNTL + NKDANQKVKGQLENITSQISLSIESIENQVDESMLNAAYALQEMDSQKTLTDSDLKTI + GEKLGMSDLYLTDQNGIFIASTEKAAKGLSLFSIWEGYKDLLNGKAQVLPSTLKIKEE + TGQIFKFTAIPRKDNKGIIETACESGVVEKALSMYVDNSNSNGINSIQIVDSAGIALT + QNLKQGTKAEWTKGKKVENNVVKQVFKDGKAVININGKNGDIFAPVKFGSEIRYVMHV + KLDTTIYYSSVSLAKQSLNSTEKKVSSNLIVYTSVSFLVLLLFLLMLFQYLRFVLKSL + NKFANVLKSMGKSKTNTLETVNVKEAELNEIQDGINVVTQNYEEIITTIKTSIGNVSG + LQQEYSKNMNQAFDTIKQISQASGEMAANNEKEMKHVDEITKVMGTMINTLNNVNSAT + HSLSDMSNKTHEYVKTSDEGLSKITNAMERVETEVKSSHESIRQLINSSNEISGIVEF + INSVTSQTNLLALNAAIEAARAGEAGRGFAVVAEQIRKLANDSSEATSRIVEILGNIK + KDIQSTTEGNEKQIIVINDSKSEIDSAKIALKGLIDFTIKSQEQVEEVTNNVELLRQN + EKTVEEVVEVVNQAIESNAASSEELQATIENLLLSMEYLSTSQNSITSELKTLDKL" + gene 3050899..3051429 + /locus_tag="Ccel_2527" + CDS 3050899..3051429 + /locus_tag="Ccel_2527" + /inference="protein motif:PFAM:PF00440" + /note="PFAM: regulatory protein TetR; + KEGG: cno:NT01CX_1607 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TetR family" + /protein_id="ACL76855.1" + /db_xref="InterPro:IPR001647" + /translation="MPKIIENIKENLILEGRKILIEKSYKELNIRDTSKNCGIGIGTF + YNYFKNKEMFVHEIFMDDWRKVIGLTESLRASKEPLKEKIRKIYICLDGFVDKYLSIF + YEISMLKGYSPERDNDIKDLYPMVEEILNIEKANGTIKSPLSPQSLSYFIVSNLVYLS + KTKYISFDELYSHMNI" + gene 3051474..3053246 + /locus_tag="Ccel_2528" + CDS 3051474..3053246 + /locus_tag="Ccel_2528" + /inference="protein motif:TFAM:TIGR00711" + /note="TIGRFAM: drug resistance transporter, EmrB/QacA + subfamily; + PFAM: major facilitator superfamily MFS_1; + KEGG: cac:CAC3368 permease" + /codon_start=1 + /transl_table=11 + /product="drug resistance transporter, EmrB/QacA + subfamily" + /protein_id="ACL76856.1" + /db_xref="InterPro:IPR001958" + /db_xref="InterPro:IPR004638" + /db_xref="InterPro:IPR005829" + /db_xref="InterPro:IPR007114" + /db_xref="InterPro:IPR011701" + /translation="MNTKNDNKKRIIVLLIFLLGIFMGAIDSGIVSPARTVIKNSFGI + SESLSVWMVTIYTLAYAVAMPIVSKLSDRYGRKKIYLTSIIVFAVGSFLCGLSNFYGN + YTFFLIARVIQAIGGGGIMPIANAFIGNSFPPEKRGTALGFVGGVYGIATILGPTMGS + SILDIAGVDNWGWIFFINLPISLLILVLSYNLKENLGDNNNKMDLKGSLVLSIMILSL + MYALTNLNYFNFTESIKDLNVYPFLILFVICLPLFILIESKADDPILNLRYFKERQIL + LTLILGFITGVGLMAVVFIPQFAENILKIKTGNGGYLVTLMSVFAGISAPLGGKFIDK + YSAKLVTVLGMICTAFGAFFLAFFTTAYPSFVSIMVGLIFVGFGMGFTMGTPLNYLML + SFVGESESASALSTLSLIRSIGVAISPNIMINFIAEAGKGVQGKVMAVMPEPSAPTFP + GSQYMSEYFDMSKMTSGGGVSNTAIEKLKTADVTNVVDVLKDFSSNMLDKLIPTIKDK + ILEAMSAAPKGAASQINLDKIFNDWKLDYINKIESARATIENTFQTAISTGYRNMFIT + AGVIAVIGLIAALLLKNKKKSISE" + gene complement(3053432..3056266) + /locus_tag="Ccel_2529" + CDS complement(3053432..3056266) + /locus_tag="Ccel_2529" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cch:Cag_0738 VCBS" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76857.1" + /translation="MSKNINLVKSICLMIFIVKILSLGLEVNLYAAGDPGNDATLSTE + STIKGVTIAELGTPSGVLSSALPGKVLLNGIQAADTSNAGAYITSFVNNAPGAKVKAV + KYKYGASTNWFETDAAYANQPISNNDFFIIKVTSEYTTQIRYYKVVVTVDAKAPELGY + YPVAGQIQEAGTTNAEVLLKADDSGKAYYIVTENYNSNITAAQVVAGKDEYGNPACAS + GSAGITADKEERIIIYDLPKYSATYNIWVVVVDSIGNMSVPHRTDIKTPGLVAGSEAK + LAYMSTIKGKTIGYYNVGTPAPTIAGVTAGTIELTMTQAIDETNVWPYATSLRATYAE + ATVKVVKYAEEASTAKFETDPAYVNEPITNNDFFIIKVTSEDCSKVSYYKIVVKSALL + TYKLPQVTNVTLNETGTAKWDDLANESGYVVQLYGECGDVGSPISLSAGTTSYNFLTA + MRAAGEGTYNVIVMGKGDGVFYTDGPWSFHSPGQTVIRLSTVSEGLNWEGNVAKWTEV + PYAISYSVQAYRDGIAWIVPVTVASDKAAAGFDFGPSISAAGAGKYTYKVTAKGNNTL + ILDATAASPLSNEKIKLAPVSCTVLSTTSKIKGTTISDLGTPNTDQSLVVPGRVTISA + TKAADTSNAGSYITLFAPNDTKSRVKAVKYANGASTANFEKDTAYSYETINNNDFFLI + KVTAEDNVTISYYKVAVTVEGRVPNLGYYPQAGQIQAAGTKKVELLVRADESGRVYYV + VTGDVSYYDPAPTKEQVLAGKNGKGGTGLASGSVPITANVEERIIIDNLPRYSTTYNV + WAVAVNGEGNMSAPYRAEVTTPGLVAGSEAKLDYMSTIKGKPIGYYNVGTPAPTIDGA + IAGTTVLTGTPAADETNVGSYITLFRGTYTGAEIKAVKYAEGANTENFETDAVYANTF + ISNNDFFIVKVTSEDKKTVSYYKIIVKVNP" + gene complement(3056289..3057527) + /locus_tag="Ccel_2530" + CDS complement(3056289..3057527) + /locus_tag="Ccel_2530" + /inference="protein motif:PFAM:PF00652" + /note="PFAM: Ricin B lectin; cellulosome protein dockerin + type I; + KEGG: scl:sce5172 putative secreted protein" + /codon_start=1 + /transl_table=11 + /product="Ricin B lectin" + /protein_id="ACL76858.1" + /db_xref="InterPro:IPR000772" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /translation="MIMKIKGFIVAFTLLLTVIFNSGISSADGTVPGTSIIYGDCNSD + GSINALDLAGFKQYLMDSERTYNSGMDLNLDNTADSVDYAILKQYLLGIVTTLPINAP + TTNIKTGVNYKIINRNSGKLLDVSGSSVSEGGNVIQWGLTGGANQQWSFIDAGGGYYK + IVNRNSGKLLEIMNSSVDNGGGAVQGIDDGDNSQKWGFIDIGGGYYKIVNMGSGKLLE + VLNTSTANGGDVAQWTDNGGSNQQWYLVAQTTGNITYTLIREQNPTADQSDAYAKIKA + AMDSAVMYYNNLTNISKQLTVYYNTSVSTADGNINGTIRFGPSRSYMDTRTAIHEIAH + TVGVGQSSGWFSLVKNGIFTGKSATEELRNITGVSTDVLHGDSQHFWPYGLNYSSEVR + TDADYINHCRIVNQFKKDGV" + gene complement(3057606..3057962) + /locus_tag="Ccel_2531" + CDS complement(3057606..3057962) + /locus_tag="Ccel_2531" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76859.1" + /translation="MIEFLTNYWFVGLMVIGFAGYVIYLITKHRWTKLREIAYKMIVQ + AEQVITGTKKGQERFNAVLTQLYNVIPLWLRIFIPKNLLEKKLQQWYELIKDSLDDGE + INHSTAHSESTDIDNL" + gene complement(3058132..3058422) + /locus_tag="Ccel_2532" + CDS complement(3058132..3058422) + /locus_tag="Ccel_2532" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76860.1" + /translation="MRGSVLDNVTWKGNSKMMYKAVMSAVPSIFRSIIKREIESWLVE + NSVKVVTEALLLKMFYEKAPKGYKQKLGPKLEAMKTTRGESEEENTDSGDEE" + gene complement(3058505..3059494) + /locus_tag="Ccel_2533" + CDS complement(3058505..3059494) + /locus_tag="Ccel_2533" + /inference="protein motif:TFAM:TIGR01921" + /note="TIGRFAM: diaminopimelate dehydrogenase; + KEGG: cth:Cthe_0922 diaminopimelate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="diaminopimelate dehydrogenase" + /protein_id="ACL76861.1" + /db_xref="InterPro:IPR010190" + /translation="MNKIRIGIVGYGNVGKGVETAIRQNADTELIAVFTRRNPESIVT + KTPGVKVVDIKDAAKFKNDIDVMILCGGSATDLPKQGSEFAAMFNIIDSFDTHAKIPE + YFENVNNAAAASNKTAVISVGWDPGLFSMMRMLSSAILPEGNDYTFWGKGVSQGHSDA + VRRVSGVKNAIQYTVPIDGAVESVRNGKNPELSIRQKHLRECFVVAEEGADRAKIEAD + IKSMPNYFADYETVVHFVSEEELKSNHSKMPHGGFVFRSGKTGIDTVNNHIIEFSIKL + DSNPEFTANVLVAYARAAARLNSEGSYGAKTVLDVPLSYLSTKSHADLIKGFL" + gene complement(3059527..3060777) + /locus_tag="Ccel_2534" + CDS complement(3059527..3060777) + /locus_tag="Ccel_2534" + /inference="protein motif:TFAM:TIGR01048" + /note="TIGRFAM: diaminopimelate decarboxylase; + PFAM: Orn/DAP/Arg decarboxylase 2; + KEGG: dvl:Dvul_0681 diaminopimelate decarboxylase" + /codon_start=1 + /transl_table=11 + /product="diaminopimelate decarboxylase" + /protein_id="ACL76862.1" + /db_xref="InterPro:IPR000183" + /db_xref="InterPro:IPR002986" + /translation="MTEYYSTITGFFGNSNPEKLLKEFGSPLYVYNEKILRQKCRDMK + NLVEYKNFVPNYSIKANSNLSLIKIVKEEGLRADAMSAGEIQLLLHAGFEPEELFFVP + NNVSESELKYAVDNGVLVSVDSLSQLELLGKINTGGKAAVRFNPGVGAGHHEKVVTAG + KKTKFGVNIDCVDQVKEIAGKYNMKICGVNQHIGSLFMEGDSYIEGVKSLLSVAEQFE + DIDFVDMGGGFGIPYNKQEGQKPLDLASFKEKLTQVLEQWTDKYGKKILFKTEPGRYI + VAESGVILGNVYTTKANYGNKYVGTDIGFNVLARPVMYDSHHDIEVYRNGKPLNEAET + EEVTVVGNICESGDIIAKNRKLPVIKEGDILGIMDAGAYGFAMSSNYNMRLRPAEVLI + KEDGEPTLIRRRDTFEDLIANFNI" + gene complement(3060809..3061501) + /locus_tag="Ccel_2535" + CDS complement(3060809..3061501) + /locus_tag="Ccel_2535" + /inference="protein motif:PFAM:PF01978" + /note="PFAM: transcriptional regulator TrmB; + KEGG: drm:Dred_3250 transcriptional regulator, TrmB" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TrmB" + /protein_id="ACL76863.1" + /db_xref="InterPro:IPR002831" + /translation="MDVIDALMQAGFTRHESVLYVTLCREGELTGYEASKLTGIPRSN + AYLGLAGLCDKGGAYKISGETAQYGPVPVNELVDNLKRKFSQIIKVIDEIPKVNIPKD + TFVTINGNEHILNKMKNLINEAQYRIYISMARNQLELVLKELIRAKERGLKVVMITSD + CTDMEGFICYMSPKKPGSFRLITDSSNVLTGHLSEINATGLFSMNKNMVDVIKDSLTN + EIKLISIENNQD" + gene complement(3061580..3062842) + /locus_tag="Ccel_2536" + CDS complement(3061580..3062842) + /locus_tag="Ccel_2536" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76864.1" + /translation="MSKLFLLTNVFQGLAWMPVNFFIMQLVLPASTAVVLSFLMVVLT + FLAPLLCQFNIKAYLYNTVSLAVSIFIGVASGGTVVGRFIVTVLCMVALVITWYCLKE + ENDFSMQTAILTLIINIIYGVINRVADMSDSVRYGNAAICISVISSVVLLIVRQVDTS + RSFGKTNMDISRTQRRNNRIFGGVMILVLILMGTLGRISEIYKFVLRLIGKTFNLLGM + LLSPGATQAEEKPMQQFQFPGVKASSGLFDEILKVVLDVLAVILIAGFTIYFVYGITK + LIIQLVRNIARWLGNREASAVIVSENGLIDEKQSLYGKNLKNITGRFLNRARNIFSRE + VPYNKLPDGKAKVRRLFRNFVNKSVRMGVPVKNSSTAEEISKGSSAAAPLDTEVNNLM + AKSYNAARYGDMEPLPGELKILEEKLNN" + gene complement(3062842..3063924) + /locus_tag="Ccel_2537" + CDS complement(3062842..3063924) + /locus_tag="Ccel_2537" + /inference="protein motif:PFAM:PF01882" + /note="PFAM: protein of unknown function DUF58; + KEGG: tpd:Teth39_1921 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF58" + /protein_id="ACL76865.1" + /db_xref="InterPro:IPR002881" + /translation="MLFLQIALALPLLIILETFLFKRFLLKGVVYRRTLSESSVFEGE + KISMIEDIENNSFLPIAWMKAESRISPNLEFTAIKNMQVSQGGYHRSVFSIMPFYRLK + RTHTVTCLKRGEYNVGNVTLTAGDILGFVTKIFSYENEVRLLVYPSPLSESRMVKCCR + SLQGDAVVRRFINPDPFLVAGVREYQAGDPVSSINWKATSRTNSLQVYKYDYSADTKL + LILFNIDSSNNQDNYPNERECEKIELGIHFCASIVDKTIKQGISTGFCCNGHFRDQNE + IVNIPARCSQIQLFTIFEAMAKLQLNRVLSFYTMIKNIKNNIPKDTDILIVSLYNDEK + IQEQIHELKRSGHDVETWIISESEVD" + gene complement(3063933..3064877) + /locus_tag="Ccel_2538" + CDS complement(3063933..3064877) + /locus_tag="Ccel_2538" + /inference="protein motif:PFAM:PF07726" + /note="PFAM: ATPase associated with various cellular + activities AAA_3; ATPase associated with various cellular + activities AAA_5; + KEGG: tte:TTE0367 MoxR-like ATPase" + /codon_start=1 + /transl_table=11 + /product="ATPase associated with various cellular + activities AAA_3" + /protein_id="ACL76866.1" + /db_xref="InterPro:IPR011703" + /db_xref="InterPro:IPR011704" + /translation="MELGDIGLIVHKIKESISKVIVGKEDIIDLSLICIITGGHMLLE + DVPGTGKTVFARSLAASVDCSFRRIQFTPDLLPSDVTGINFYNQKESNFTFRPGPVFS + NIVLADEINRATPRTQSSMLECMEEKQVTIDGETRRLAAPFFVIATQNPVEIQGTFPL + PEAQLDRFLIKTSMGYPDTKSSIGILKRFKENNPLTELKAVVSADEICKASEIYSKVK + VSEDIMEYIINVAEATRKHSGVHLGVSPRGTLSLMKAAQVHALLKGRTFVTPDDIKAM + AVPVLAHRIIPKSLTAENTNPGEKIINNILEQTAVPLE" + gene complement(3064942..3065316) + /locus_tag="Ccel_2539" + CDS complement(3064942..3065316) + /locus_tag="Ccel_2539" + /inference="similar to AA sequence:KEGG:Cthe_1214" + /note="KEGG: cth:Cthe_1214 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76867.1" + /translation="MIVMLIGLAAGIISGMGIGGGAILIPALVIFVKPEQHIAQSVNL + LFFIPTAIVALVIHIKNKNVNFKMGIPIVITGLGGAVLGSKLALAMNGATLKHIFGVF + LLLMGIYEIFGKGKVKKIKNTQ" + gene complement(3065340..3065711) + /locus_tag="Ccel_2540" + CDS complement(3065340..3065711) + /locus_tag="Ccel_2540" + /inference="similar to AA sequence:KEGG:Cthe_1215" + /note="KEGG: cth:Cthe_1215 permease" + /codon_start=1 + /transl_table=11 + /product="permease" + /protein_id="ACL76868.1" + /translation="MAFSGKTARYMKYILTGLAAGVANGLFGSGGGTIAVPAMVFLLD + ADEHKAHATALLIILPLTLVSTYFYLSNNYVDWNITWKAMAGGVVGGAIGAFLLNKCP + SNVLRKIFGIFMILAAIRMIF" + gene 3065903..3067081 + /locus_tag="Ccel_2541" + CDS 3065903..3067081 + /locus_tag="Ccel_2541" + /inference="protein motif:PFAM:PF01594" + /note="PFAM: protein of unknown function UPF0118; + KEGG: lsp:Bsph_4383 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0118" + /protein_id="ACL76869.1" + /db_xref="InterPro:IPR002549" + /translation="MDSNNNRSLLNSKLFRYGCYLLLALLIVYMFGKINFFIAPFQSF + VYSIIFPILFGGLLYYILRPIVLMLEKGRVPHIWAILLAFVIVLSALILLSSYTGSII + KSQFNDFAKSLPYLYESAENTINNLLKSNLLSYFDSSSFQTSDLTEKVSNFLQGAAKS + VGKNTINFISAITNIGSVIIILPVILFYFLKDGHKFMPSIVRFVPSSQKDNIRKILKD + IDFVLSNYIAGQLLVAFFIGLLMYIGYLIIGLKYSLLLAIFAMITCIIPFFGPWIGII + PAILLSLADNPFMAIKIFIVMIIVQQIDNNFISPQVMKKSMDIHPLTVILLLMGILPI + FGFIGLIIVIPLYSAIKITIKNIIEMYYPKYAEALNLDMPNETEKPKKQLKFKFKKNK + " + gene complement(3067084..3068223) + /locus_tag="Ccel_2542" + CDS complement(3067084..3068223) + /locus_tag="Ccel_2542" + /inference="protein motif:PFAM:PF00149" + /note="PFAM: metallophosphoesterase; + KEGG: mma:MM_3285 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="metallophosphoesterase" + /protein_id="ACL76870.1" + /db_xref="InterPro:IPR004843" + /translation="MRLVTAGFALLTYAFLNYYIGLRGLKSINTKVPINKYAYWVIIA + VLASMYFVGMLGGKYLPDRLGRAVNTVGGYWLAAFVYFIGIVILLDVFRILGEKLNIL + PGFLKERAWLVAAAVVLFVGIVLVVGTYNAFMPRVVSYELNIDKKAGDMKKLKCAMIT + DVHLGDTIGRDRLHTAVEKINSLNPDIAVITGDLIDREIEPVKKANMLEELKGLRTRF + GSYVIMGNHEYYSNDTEEITRMYEESGLVVLRDQNVKVNNSFYLVGREDFAADISGYK + RGKLGNLLDGVDKRLPVIVLDHQPKDLSEPREESVDLQLSGHTHAGQFFPINLITSSI + FEEDNGHLKDGKFNLIVSCGYGTWGPTVRIGSRSEVLDININFLK" + gene 3068437..3069426 + /locus_tag="Ccel_2543" + CDS 3068437..3069426 + /locus_tag="Ccel_2543" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cac:CAC2257 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76871.1" + /translation="MKYIYKSGIIVSLFFIILAITTICIRVDNQNHKNNIIGGSVKEL + TQTKETEEVLSRQTVSIMKEKRNNFNETYFRPSSLKSLNNNFIDFGTFSGTFKAGTVP + ADLMDTPIKTIVNYFSVLQQAENLTDEKKGGCGTVGYAKKPYPIAYQFLSESSKKSMP + YNEYLDSFQGIGHINLIKVIPIITENPNENKYFLELEILEGTTTAGTSFNYYFAEISL + VNSNKRYYIDSLELTSEDFFCAPYHGWSHNAESYVEIVYGNWCGLIKKQYAPHQNKFT + KEIIVDAVNGDKYMFKFAKLTNGTDFLINTLVQKDGAWIPIHIDIDKYIDKNV" + gene complement(3069493..3069933) + /locus_tag="Ccel_2544" + CDS complement(3069493..3069933) + /locus_tag="Ccel_2544" + /inference="protein motif:PFAM:PF00258" + /note="PFAM: flavodoxin/nitric oxide synthase; + KEGG: rci:RCIX1229 flavodoxin" + /codon_start=1 + /transl_table=11 + /product="flavodoxin/nitric oxide synthase" + /protein_id="ACL76872.1" + /db_xref="InterPro:IPR001226" + /db_xref="InterPro:IPR008254" + /translation="MKTWVLYYSKGGNTKKIADEIADELEDVLKSEQIPPAYPPENVA + LLFLGTGEYGGKPDSKTLEFVRTLNKDRVKNVAVFGTNGKGTTGTAIDTIKSLLKEKG + INVIDESFCCKGKFFVFFNRKNPDTNDFKAAREYARRVYNSIKA" + gene complement(3069973..3071367) + /locus_tag="Ccel_2545" + CDS complement(3069973..3071367) + /locus_tag="Ccel_2545" + /inference="protein motif:TFAM:TIGR01316" + /note="TIGRFAM: glutamate synthase (NADPH), + homotetrameric; + PFAM: FAD-dependent pyridine nucleotide-disulphide + oxidoreductase; + KEGG: cth:Cthe_0372 sulfide dehydrogenase (flavoprotein) + subunit SudA" + /codon_start=1 + /transl_table=11 + /product="glutamate synthase (NADPH), homotetrameric" + /protein_id="ACL76873.1" + /db_xref="InterPro:IPR000103" + /db_xref="InterPro:IPR000759" + /db_xref="InterPro:IPR001327" + /db_xref="InterPro:IPR006004" + /db_xref="InterPro:IPR013027" + /translation="MPNMSLKKVKMPEQEPNIRNKNFKEVALGYDEQMAIEEAERCLN + CKHKPCVAGCPVNVKIPEFILLVAEGKFEEAYHKIRETNSLPAVCGRVCPQESQCEKV + CVRAKKGESVGIGRLERFVADWYMQNVEAAVSRPESNGIKVAVVGSGPSGLTCAGDLA + KMGYEVTIFEAFHVPGGVLMYGIPEFRLPKNLVQQEIQTVKDLGVDIQTNMVIGKVLS + IDDLKAEGYKAVFIGSGAGLPSFMGIPGENYNGVYSANEFLTRINLMGAYKFPSTDTP + VFVGKNVAVVGGGNVAMDAARSAKRLGAENVYIVYRRSEAEMPARLEEVHHAKEEGII + LKVLTNPKQILGTEDGWVKGMECVEMELGEPDKSGRRRPVEKSGSEHVIDLETVIIAI + GQSPNPLISSTTPGLDIQTWGGIIVEEETGATSKSGVYAGGDAVTGAATVILAMGAGK + KAAEAIDIYIRQNQ" + gene complement(3071360..3072205) + /locus_tag="Ccel_2546" + CDS complement(3071360..3072205) + /locus_tag="Ccel_2546" + /inference="protein motif:PFAM:PF00175" + /note="PFAM: oxidoreductase FAD/NAD(P)-binding domain + protein; Oxidoreductase FAD-binding domain protein; + KEGG: cth:Cthe_0373 ferredoxin--NADP(+) reductase subunit + alpha" + /codon_start=1 + /transl_table=11 + /product="oxidoreductase FAD/NAD(P)-binding domain + protein" + /protein_id="ACL76874.1" + /db_xref="InterPro:IPR001433" + /db_xref="InterPro:IPR008333" + /translation="MFKIVKKQVLNPSIVLMSIHAPLIAKKAEPGQFIILRISDGGER + IPLTIADYDRENGTVTIIYQLVGKTTRELADMNEGDSLLDFVGPLGIASHLEGYRKVA + VIGGGLGSAIAYPQAKKLHSLGAEVHSITGFRNKDLIILEDEMKKFSDKLIVATDDGS + NGNKGFVTDVLKQLIDEGNKYDLVIAIGPLVMMRAVSNLTREYGIKTLVSMNPVMIDG + TGMCGGCRLTVGGKTKFACVDGPDFDAHEVDFDEAMRRQNMYKKQEKESEDIHVCRLG + GANNA" + gene complement(3072339..3073244) + /locus_tag="Ccel_2547" + CDS complement(3072339..3073244) + /locus_tag="Ccel_2547" + /inference="protein motif:PFAM:PF02163" + /note="PFAM: peptidase M50; + KEGG: cth:Cthe_0098 peptidase M50" + /codon_start=1 + /transl_table=11 + /product="peptidase M50" + /protein_id="ACL76875.1" + /db_xref="InterPro:IPR008915" + /translation="MSVTTYIEFQVKRTRIQIDLLILPIFLAAMIGNLLLEYSIALGF + IICHELGHIASAAMCGVRLNSFRLLPIGVNASIEDLQCSKPQKVLIYLTGPLVNIFFA + ISLYCIHLWEVPVWWPSTFKIMPAVIINLWLAIFNLIPVPPLDGGKIAMELLSGRLGL + FRANRLMHIFSLFFSILIISVGTVVLIISKYNASFILIGVYILLLLKKNKKEAAILNM + KNFVLKRSAIIRKGIFPVREIVVMKDVKLLDLVKSMDYSDVFHIIKVLDNDLNIIKTV + TEQDVLNTFIEGITDITVEEMLNKR" + gene complement(3073273..3074130) + /locus_tag="Ccel_2548" + CDS complement(3073273..3074130) + /locus_tag="Ccel_2548" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: cth:Cthe_0097 peptidase M23B" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL76876.1" + /db_xref="InterPro:IPR016047" + /translation="MDEIIERPKYSRPTGPRRNRRNTNNDLMSTIAAAKMLIVVVFLS + AIALCKAANTPATDAFVSQVKKITTVNYDVNRYIVSAATKLGVKLPEGKDINGNDVQT + SSVANKTDSGDSVNPASDTKSSSLSIDSESVPGIDMQVVDEIGIKGIADKYSFIIPIK + GEVISPFGTRTDPLSGSPQFHTGIDIEANMGTSIKAALAGEVTEVGTNPQNDKYVKIK + HNDGITTLYGHCSILVAKVGQKVNQGDVIAKVGNSEDKSNSNLHFEVSKDNKLVDPGK + LFDILNGDN" + gene 3074307..3075323 + /locus_tag="Ccel_2549" + CDS 3074307..3075323 + /locus_tag="Ccel_2549" + /inference="protein motif:TFAM:TIGR00675" + /note="TIGRFAM: DNA-cytosine methyltransferase; + PFAM: C-5 cytosine-specific DNA methylase; + KEGG: mat:MARTH_orf138 cytosine-specific + methyltransferase, related to HhaI" + /codon_start=1 + /transl_table=11 + /product="DNA-cytosine methyltransferase" + /protein_id="ACL76877.1" + /db_xref="InterPro:IPR001525" + /translation="MIDVKEKSLLGFKFIDLFAGLGGFRIALESLGAKCVYSNEWDKP + VRKVYTDNFGDIPEGDITQINENSIPEHDILCAGFPCQAFSISGKQRGFEDSRGTLFF + DVARIVKAKKPKIVFMENVKNFVSHDDGKTLCIVKATMEELGYKFNQKVLNAVNYGIP + QNRERIYMVCFRNDLNIENFNFPKPFPLKRYVEDFLLEDESQVEHLYIQRPDTYFNGV + EDNKYSNKPIRLGIVNKGGQGERIYSTKGIAITLSAYGGGIFAKTGGYLINGKTRKLH + PKECARLMGFPDSYKISNSANQAYKQFGNSVVVDVLQLIGQEIGSAMEEAINERDRIP + TMAI" + gene 3075343..3075597 + /locus_tag="Ccel_2550" + CDS 3075343..3075597 + /locus_tag="Ccel_2550" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76878.1" + /translation="MQSDLVSRLKRFEKAIKNCDIDEQYRSDKYKYLFSLFENKGINR + NMSKFKGVDLPIGKYQFSIFKYALNKYRQFLEDAATSTSE" + gene 3075788..3076834 + /locus_tag="Ccel_2551" + CDS 3075788..3076834 + /locus_tag="Ccel_2551" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76879.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene 3076992..3077345 + /locus_tag="Ccel_2552" + CDS 3076992..3077345 + /locus_tag="Ccel_2552" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mat:MARTH_orf139 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76880.1" + /translation="MDKGSEIFSNWIIETYGNKGTRYFITNDFTILPIERFSEYFNVS + AKYRVKRSGSSNVGKSNISNVLSYIKSHDYVVQTTRENGGKLFVESYEPLHKRRFLLH + GHEYMFSLRDSEYVS" + gene complement(3077491..3078537) + /locus_tag="Ccel_2553" + CDS complement(3077491..3078537) + /locus_tag="Ccel_2553" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76881.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3078625..3078972) + /locus_tag="Ccel_2554" + CDS complement(3078625..3078972) + /locus_tag="Ccel_2554" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mat:MARTH_orf139 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76882.1" + /translation="MSSRWEDFEIDCTEYLNKKFGEYARFKLEGGSDSTVPDIKVTTK + FGNIFYIDAKNSPAQCGQFVLLPDISSSTFIYSHQNTTRINNYAKQIMGHMNTQFDEF + KEAGTAGKDIIMC" + gene complement(3078987..3079133) + /locus_tag="Ccel_2555" + CDS complement(3078987..3079133) + /locus_tag="Ccel_2555" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76883.1" + /translation="MEGIVKAGLTESKNRVYKKDIRQIIRISFFRLLMFKRLGDWIIN + RLLE" + gene complement(3079106..3079498) + /locus_tag="Ccel_2556" + CDS complement(3079106..3079498) + /locus_tag="Ccel_2556" + /inference="protein motif:PFAM:PF02142" + /note="PFAM: MGS domain protein; + KEGG: cth:Cthe_0095 methylglyoxal synthase" + /codon_start=1 + /transl_table=11 + /product="MGS domain protein" + /protein_id="ACL76884.1" + /db_xref="InterPro:IPR011607" + /translation="MNIAFIAHDNKKELMASFCIAYKSILQDHHIIATRSTGIMINKA + TGLNVNLLAYGSLGAQQLSARIACDEIDLLIYFRDSNVEEDPNNYLLFKHCDVNNIPF + ATNIASAEVLIKGLERGDLAWRELLRQD" + gene complement(3079523..3079807) + /locus_tag="Ccel_2557" + CDS complement(3079523..3079807) + /locus_tag="Ccel_2557" + /inference="protein motif:TFAM:TIGR01215" + /note="TIGRFAM: cell division topological specificity + factor MinE; + PFAM: Septum formation topological specificity factor + MinE; + KEGG: cth:Cthe_0094 cell division topological specificity + factor MinE" + /codon_start=1 + /transl_table=11 + /product="cell division topological specificity factor + MinE" + /protein_id="ACL76885.1" + /db_xref="InterPro:IPR005527" + /translation="MLIDFAKIFGRSKPSKDVAKERLQLVLIHDRANVSPEFLEMVKG + EIIKVIQHYMEIDESALDIQLTRTKSEEGDRVVPALIANIPIKNVKNAGK" + gene complement(3079822..3080622) + /locus_tag="Ccel_2558" + CDS complement(3079822..3080622) + /locus_tag="Ccel_2558" + /inference="protein motif:TFAM:TIGR01968" + /note="TIGRFAM: septum site-determining protein MinD; + PFAM: Cobyrinic acid ac-diamide synthase; + KEGG: cth:Cthe_0093 septum site-determining protein MinD" + /codon_start=1 + /transl_table=11 + /product="septum site-determining protein MinD" + /protein_id="ACL76886.1" + /db_xref="InterPro:IPR002586" + /db_xref="InterPro:IPR010223" + /translation="MGEVIVITSGKGGVGKTTTTANIGAGLALAGKKVVLIDTDIGLR + NLDVVMGLENRIVYDLVDVIEGVCRVKQALIKDKRYEGLYLLPAAQTRDKSAIAPEQM + INLINELKNEFDYIIIDCPAGIEQGFKNAIAGANRAIVVTTPEVSAVRDADRIVGLLE + ANELRNPKLLINRVKIDMVKRGDMMTMDDIIDILAIDLIGVVPDDEKIVVATNKGEPA + VTDEKSAAGQAYRNVTRRIQGEDVPIMNLESDEGFFNKFKKLLGIKNT" + gene complement(3080792..3081481) + /locus_tag="Ccel_2559" + CDS complement(3080792..3081481) + /locus_tag="Ccel_2559" + /inference="protein motif:TFAM:TIGR01222" + /note="TIGRFAM: septum site-determining protein MinC; + PFAM: Septum formation inhibitor MinC; + KEGG: cth:Cthe_0092 septum formation inhibitor" + /codon_start=1 + /transl_table=11 + /product="septum site-determining protein MinC" + /protein_id="ACL76887.1" + /db_xref="InterPro:IPR005526" + /db_xref="InterPro:IPR013033" + /translation="MDENSVTFKGTVNGLTIILKNEPEFSEIIQCMRDKVNSAGKFFR + GAKLAVKYKGRILNEEERSQLLEILVRESGARIEAFEEDKEQVQNVANNVSSDKPVER + KNQIKKYMFFKGIEEGQTKFYRGTVRSGQLVNFDGNLVILGDVNPGAVIEATGNIVVM + GLLRGVVHAGSDGNKEAIVVALGLNPTQLRIADIITRPPDEKGVVGNPIPELAYVKDD + ILYVERFLPTR" + gene complement(3081522..3083624) + /locus_tag="Ccel_2560" + CDS complement(3081522..3083624) + /locus_tag="Ccel_2560" + /inference="protein motif:TFAM:TIGR03423" + /note="TIGRFAM: penicillin-binding protein 2; + PFAM: penicillin-binding protein transpeptidase; + Penicillin-binding protein dimerisation domain; + KEGG: cth:Cthe_0091 peptidoglycan glycosyltransferase" + /codon_start=1 + /transl_table=11 + /product="penicillin-binding protein 2" + /protein_id="ACL76888.1" + /db_xref="InterPro:IPR001460" + /db_xref="InterPro:IPR005311" + /db_xref="InterPro:IPR017790" + /translation="MKNFFKDRYNIVGIAIILMFSVIVYQLANMQLVQGENYYAQSQS + KIMSSTTILAERGNILDRYGVPVAVNSTSYSVLLMDTGLGSKMLNEMMYKILDVLERN + GDSPDDTFSKYLTYPLGFGSMLKNNENRQKTLKTMTGYDFKGFDQDSTPEEIYEYFKD + KVFKVDDKYSEKDAYDIMTLRYAGISMNPVLADSISTNTIAELEERSDEFPGITIQSV + PSRKYIDAKYAGQLIGHVGPIDGDELAKHRDAGYKMTDVIGKSGVELTTEGYLRGTNG + YRRVEIDDNGKPRTVSEEGVKPGSDVVLTIDMELQKVAMDSLAKNIKYIREVNNSKKN + HRDAFAGAAVAMDVNTGEVLALASYPSYDPSIFIADPDDKAANKAKAALGDPKNTTTS + EYNRAIAGIYTPGSIFKPLIGIAALEEGKTTPYETYFDKGYETYDGMMLKSIEYIQYR + AGLGTVNLITAIQRSSNPYFYHYGNKVGIDNIVKWAKRFGLGKKTGIDLLGESKGIIS + SREYKKKVNPYPWTAADTAQTAIGQMYSSFTPIQFANYAATIANGGKLMKPHIIKRVV + KYDGSIVTETKPEYEIIPVKKENMKAVQQGMIAVANATDGTAADKFKDLKDITVAGKT + GTAETGQEANHSSNALFICYAPAEKPQIAVAVVVERGVFGSYTAPIAKDILKYYFDSN + GTGNKDFTVKADIVQLTK" + gene complement(3083668..3084180) + /locus_tag="Ccel_2561" + CDS complement(3083668..3084180) + /locus_tag="Ccel_2561" + /inference="protein motif:TFAM:TIGR03426" + /note="TIGRFAM: rod shape-determining protein MreD; + KEGG: cth:Cthe_0090 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="rod shape-determining protein MreD" + /protein_id="ACL76889.1" + /db_xref="InterPro:IPR007227" + /translation="MRNKVILYAILIFIFVTAQVTLLNSITIFGVAPNLVIILIVSIS + LLKGKTDGAVVGFSAGLCMDAVIGVALGYHALVGMLLGLLLGNINKRLFKENILVMAF + CTFLSTYIFESAILFTSYLMGLKVEFFTILKTVIFPESLVNCVLGVIVFLVIILLNRG + FLENEEKNRY" + gene complement(3084177..3085037) + /locus_tag="Ccel_2562" + CDS complement(3084177..3085037) + /locus_tag="Ccel_2562" + /inference="protein motif:TFAM:TIGR00219" + /note="TIGRFAM: rod shape-determining protein MreC; + PFAM: Rod shape-determining protein MreC; + KEGG: cth:Cthe_0089 rod shape-determining protein MreC" + /codon_start=1 + /transl_table=11 + /product="rod shape-determining protein MreC" + /protein_id="ACL76890.1" + /db_xref="InterPro:IPR005223" + /db_xref="InterPro:IPR007221" + /translation="MKYFKSRALVITIIVLILIVCVGLTVNPASNINWIGNLISVPFT + SVEKAFSYTGQKVEEGISLFDNVQKLQAENKELKEKIDKLNNERTEYLRLKRENEDLR + KVFDLKDQFASYDHVGANIIARDGGNLFNVFLTDKGSANGINYNMPVITSKGLVGRVV + SAQLFSSKIISIIEDGSSVSALVAKSGDYVVVKGDIKLEKEGLCKLEYIPADLDLIQG + DIIQTSGIGGIYPRGITIGTVKEIRAGESDLDRYAIIQPAADLKRLNQVVILRNKDAQ + LNSEMENADK" + gene complement(3085084..3086106) + /locus_tag="Ccel_2563" + CDS complement(3085084..3086106) + /locus_tag="Ccel_2563" + /inference="protein motif:TFAM:TIGR00904" + /note="TIGRFAM: cell shape determining protein, MreB/Mrl + family; + PFAM: cell division protein FtsA; cell shape determining + protein MreB/Mrl; + KEGG: cth:Cthe_0088 rod shape-determining protein MreB" + /codon_start=1 + /transl_table=11 + /product="cell shape determining protein, MreB/Mrl family" + /protein_id="ACL76891.1" + /db_xref="InterPro:IPR001023" + /db_xref="InterPro:IPR003494" + /db_xref="InterPro:IPR004753" + /translation="MSFFARDIGIDLGTANTLVHVKGKGIVVKEPSVVAVNIKNNEVL + AVGEAAKEMIGRTPGNIVAIRPMKDGVIADFDITQNMIKYFIKKAMSSGRFSKPRVVV + CVPSGVTEVEKRAVEDATLQAGAKEAYLIEEPMAAAIGAELPVEEPSGSMVVDIGGGT + SEVAVISLGGIVTSKSLRIAGDELDISIAHYIKKEYSLMIGERSAEEIKVTIGSAFPK + AKEEKMMIRGRDLITGLPKNIEITSSEINEALKEPVNAIIDSIKFTLEKTPPELAADV + MDRGIMLTGGGALLDGLDKLIMQETGMPVSIAENPLDCVALGTGKVLEEIETLKKVLL + SPQRLK" + gene complement(3086133..3086822) + /locus_tag="Ccel_2564" + CDS complement(3086133..3086822) + /locus_tag="Ccel_2564" + /inference="protein motif:PFAM:PF04002" + /note="PFAM: helix-hairpin-helix motif; DNA repair protein + RadC; + KEGG: aoe:Clos_1766 DNA repair protein RadC" + /codon_start=1 + /transl_table=11 + /product="DNA repair protein RadC" + /protein_id="ACL76892.1" + /db_xref="InterPro:IPR000445" + /db_xref="InterPro:IPR001405" + /translation="MERLKIKELPVCERPYEKMSEVGAESLSNAELLAIIIKTGTKSY + TAVELAQMVLKLSQDGRLSSLNNVSIEQFMKVKGIGRVKAIQIKAVLEFSKRVATSNG + IVRHVVNSPGDVSNLMMEEMRYLKKEMFKAILLDTKNKVLKTESISIGSLNASIVHPR + EVFSEAVKCGCNSIIFIHNHPSGDPTPSKEDLQTTDRLINAGNILGIKVLDHIILGDG + RYVSLKEQGFI" + gene complement(3087008..3087589) + /locus_tag="Ccel_2565" + CDS complement(3087008..3087589) + /locus_tag="Ccel_2565" + /inference="protein motif:TFAM:TIGR00172" + /note="TIGRFAM: maf protein; + PFAM: Maf family protein; + KEGG: pth:PTH_0815 nucleotide-binding protein" + /codon_start=1 + /transl_table=11 + /product="maf protein" + /protein_id="ACL76893.1" + /db_xref="InterPro:IPR003697" + /translation="MRNIVLASSSPRRKDLLEQIKLPFEIIPSDIEENISELSGTPAK + KAEQLSYQKARDVADKVQKGLILGADTIVVIDDEILGKPKDSEDAYNMLKKLSGKEHE + VITGICLLDLDNKIELIQHETTFVKFIELDDEKIKAYIKSGEAFGKAGSYAAQGVGAI + FVKGIKGCYSNIVGLPLNRLGNMLEKLNEKIIK" + gene 3087872..3088486 + /locus_tag="Ccel_2566" + CDS 3087872..3088486 + /locus_tag="Ccel_2566" + /inference="protein motif:PFAM:PF05389" + /note="PFAM: Negative regulator of genetic competence; + KEGG: cth:Cthe_0085 negative regulator of genetic + competence" + /codon_start=1 + /transl_table=11 + /product="Negative regulator of genetic competence" + /protein_id="ACL76894.1" + /db_xref="InterPro:IPR008681" + /translation="MRIEKVNENVLRVTITLNDLEERNIDISSLNYNSPAAQELFWDM + MERAEEEYGFASGDSQLVFEASPENEDGFVVTITKIDSDGEFESIQKYIKSKYKNSDL + RQKKKKSKVCSTLNIYCFDSIEDLCALAKQIYPLYHGESTVYRYRSSYYLLLAGSSSS + PQLDIIMDEYSVQVGNANFYEGYLNEYGERIIQENAIETLNVYF" + gene complement(3088542..3089612) + /locus_tag="Ccel_2567" + CDS complement(3088542..3089612) + /locus_tag="Ccel_2567" + /inference="protein motif:TFAM:TIGR02089" + /note="TIGRFAM: tartrate dehydrogenase; + PFAM: isocitrate/isopropylmalate dehydrogenase; + KEGG: bcy:Bcer98_0765 tartrate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="tartrate dehydrogenase" + /protein_id="ACL76895.1" + /db_xref="InterPro:IPR001804" + /db_xref="InterPro:IPR011829" + /translation="MNTHKIAVIAGDGIGPEVIAEGVKVLKAISELNPEINFEFTEFP + WGCEYYVKTGKMIADDGMEQLKKFDAIYLGAVGYPGVPDHISLWGLLLKIRKGFDQYV + NLRPVRLLEGAECPLKGVDRSQIDMIVVRENSEGEYAGAGDWLFKDKPEEVVLQTGVF + SRKGCERIIRYAYEVARKEGKTLTSISKANALNYSMVFWDQIFEEVGKEYPDVKTYSY + LVDAACMFFVKQPERFQVVVTSNLFGDIVTDLGAAISGGMGLAAGANINPERTYPSMF + EPVHGSAPDIAGQGKANPLAAIWSVSQMLDFFGYENWGSKVLNAIEKVMVERKHLTPD + MGGTSKTNEVGDAVIEVLKRLA" + gene complement(3089763..3092102) + /locus_tag="Ccel_2568" + CDS complement(3089763..3092102) + /locus_tag="Ccel_2568" + /inference="protein motif:TFAM:TIGR00763" + /note="KEGG: cth:Cthe_0082 Lon-A peptidase; + TIGRFAM: ATP-dependent protease La; + PFAM: peptidase S16 lon domain protein; AAA ATPase central + domain protein; ATPase associated with various cellular + activities AAA_5; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="ATP-dependent protease La" + /protein_id="ACL76896.1" + /db_xref="InterPro:IPR001984" + /db_xref="InterPro:IPR003111" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR003959" + /db_xref="InterPro:IPR004815" + /db_xref="InterPro:IPR008268" + /db_xref="InterPro:IPR008269" + /db_xref="InterPro:IPR011704" + /translation="MAENIKKKQKKQLPLLPLRGLTVFPFMTLYFDVGRDKSIKALEE + AMINDQLIFLVAQKDASADSPSADGIYSIGTISKVKQLLKLQGDTIRVLVEGINRAEI + KKFVQDDPFFIAEVVESKTEEDFDENEVEALKRRLISAFEEYVKLSGKVSPDTALSVV + EISNISQVSDIIANNIPLKVEQKQAILSEFHPLRRVEKLLEILYQEIEILEIEKDINT + KVRKQIDKLQKEYYLREQMKAIQTELGDREGVAGEVEEYREKLKSAELPEEVEKKVQK + ELDRLLKMPQGSAEGGVIRTYLDWIFDLPWNKSTQEHIDLKSAEEILEKDHYGLTKVK + ERIIEYLAVQKLKNSLKGPILCLVGPPGVGKTSIAKSIAKALNRNYVRISLGGVKDES + EIRGHRRTYVGSMPGRIISALKQAGSNNPLILLDEIDKMSSDFRGDPASAMLEVLDSE + QNFAFRDHYMELPFNLSNALFLTTANTLDTIPRPLLDRMEIINLSSYTEEDKANIAMK + YLLPKQMKLHGLTSRNIRIDEGTVRDIINYYTREAGVRNLEREIGSVCRKVAKIIVSE + NKKSVTVNRNNLEKFLGVKRFRFDYAGERDEIGIARGLAWTPVGGDTLSIEVNLMQGK + GKLELTGHLGDVMKESAKAAMSFIRSRCKELNINEQFHEENDIHIHVPEGAIPKDGPS + AGITLATAMVSALSGVPVSRKVAMTGEITLRGRVLPIGGLKEKVLAAHRAGIETIILP + IDNKKDIEEIPQNVRKSLNFICASDMQTVLENALVHNKV" + gene complement(3092206..3093948) + /locus_tag="Ccel_2569" + CDS complement(3092206..3093948) + /locus_tag="Ccel_2569" + /inference="protein motif:TFAM:TIGR01064" + /note="TIGRFAM: pyruvate kinase; + PFAM: PEP-utilising protein mobile region; Pyruvate kinase + barrel; Pyruvate kinase alpha/beta; + KEGG: csc:Csac_1831 pyruvate kinase" + /codon_start=1 + /transl_table=11 + /product="pyruvate kinase" + /protein_id="ACL76897.1" + /db_xref="InterPro:IPR001697" + /db_xref="InterPro:IPR008279" + /db_xref="InterPro:IPR015793" + /db_xref="InterPro:IPR015794" + /translation="MRRTKIICTLGPASDNEDILRKMMLGGMSLARMNFSHGTHEEHK + KRADLVKKIREELNLPIPLLLDTKGPEIRTGKFKNDQAILKENNEFILVNEDILGDET + KCTITYKELYKDVSRGSKILINDGLVELEVTEIKNKDIYCRVLNGGAVGNHKGINVPG + AEIKLPSLTEQDIDDIKFGIKNDFDIIAASFVRKASDVVEIRKVLEKNGGKDILIIAK + IENREGIKNFNDILKVSDGIMVARGDLGVEIPVEEVPIVQKNIIEKCYQNGKPVITAT + QMLDSMIRNPRPTRAEASDVANAIFDGTSCVMLSGETAAGKYPIETIEVMAKIAEKAE + KSMDYWNRFATARTELDTSVTNAISHATCTTALDLKAAAIITVTQSGHTARMIARFRP + ACPIIATTANPKVQRQLNLSWGVMPYLVGIAKTTDDMFDNGVEKALESGLVKNGDLAV + ITAGMPAGISGTTNTLKVHIVGRVLVQGVGIGTSSVTGELCVAQNTKEAMDKFTDGNI + IVAPFTDNSMLPVIKRASAIVVEEHGQSCHAATVGLALDIPVILGAENATKILKAGSV + VTVDSERGLVIRCN" + gene 3094194..3095564 + /locus_tag="Ccel_2570" + CDS 3094194..3095564 + /locus_tag="Ccel_2570" + /inference="protein motif:PFAM:PF00209" + /note="PFAM: sodium:neurotransmitter symporter; + KEGG: chy:CHY_0068 sodium transporter family protein" + /codon_start=1 + /transl_table=11 + /product="sodium:neurotransmitter symporter" + /protein_id="ACL76898.1" + /db_xref="InterPro:IPR000175" + /translation="MEKKSLEREKFSTGLAVFFATLSSTVGLGNIWKFPYLTGKYGGG + AFLLVYFIFILLVAIPVMVSELYIGRKTRKNPIGAIYSIKPKGPWKLIGYMGILSAFF + ILFFYSSVAGWIYSYIFKGLSGVFSNSSFKDLDNIFHQTVSAPIYPIIWQFVSILVVS + SILLLGVKNGIERMTKLLMPLLLILIVICDIRSLTLPGAMKGLTFIFKIDFSSITKEV + ILMALGLSFFKLSLGMGTIITYGSYFTSDNNMMATAGRVALSDTIVSLLAGIAIFPAV + FSFGMAPQQGPGLLFKTIPLVFSKVPFGGVLIVLFFLLSAIAATTAMLSMLEVVVTYF + VEEKKMSRRKSLLICSSIVLIIGVLVSMSQNGSNPISKIKPFGLNLFDLFDQASSNVL + LPLGGLLIALFAGYIVNKKDIETELSNNGKLKNHALIKIYIFLVRYITPILLLIIFLS + MLGVWG" + gene complement(3095600..3096952) + /locus_tag="Ccel_2571" + CDS complement(3095600..3096952) + /locus_tag="Ccel_2571" + /inference="protein motif:PFAM:PF00285" + /note="PFAM: Citrate synthase; + KEGG: mta:Moth_1122 methylcitrate synthase" + /codon_start=1 + /transl_table=11 + /product="Citrate synthase" + /protein_id="ACL76899.1" + /db_xref="InterPro:IPR002020" + /translation="MEKSLNEYIEKMVGVVDCINRIDPEYFTKYSVKKGLRNSDGSGV + LVGLTEIGEVHGYFISEGERKEDEGHLVYRGIDVYEMVRGFQKEKRFGFEEVCYLLLF + AKLPNRDELSEFTELLGGLRALPVGFTEDMILKAPSCDIMNKLARSVLASYSYDDEPD + GIDPKNLLRQSIELIARFPTMAAYGFQAKSHYYGGQSLYIHSPLPQLSTAENILHMIR + PDNKYTQTEAEILDLALVLHAEHGGGNNSTFAARVVSSTETDTYSAIAAAVGSLKGPK + HGGANIKAMNMLSDIKEHVKDWTDDDEVRNYLIKIINKEAFDKAGLIYGMGHAVYTLS + DPRTILLKEKAHQLAIEKGREKEFLLYDAVERIAPDVFAQAKGTTKNICANVDLYSGF + VYDALGIPTELFTPLFAVARIVGWCAHRIEEVVSMQKIIRPAYKSISRPKKYIPMEER + " + gene complement(3097273..3097767) + /locus_tag="Ccel_2572" + CDS complement(3097273..3097767) + /locus_tag="Ccel_2572" + /inference="protein motif:PFAM:PF02810" + /note="PFAM: SEC-C motif domain protein; + KEGG: cth:Cthe_0060 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SEC-C motif domain protein" + /protein_id="ACL76900.1" + /db_xref="InterPro:IPR004027" + /translation="MSIYEQWREIADAERTPQENESFWKDYFLKEKDNYAYILGNNLK + TLKGDLKELASTFNMDNVTFTGFLDGINTSLVEEVDLESLEETTVIDAEIDYEKLYYN + MLDSKAEWLYNLPEWEDLLSVERRKEITTEYRKAGIAVSNKVGRNDPCPCGSGKKYKK + CCGK" + gene 3097968..3098621 + /locus_tag="Ccel_2573" + CDS 3097968..3098621 + /locus_tag="Ccel_2573" + /inference="similar to AA sequence:KEGG:HM1_2071" + /note="KEGG: hmo:HM1_2071 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76901.1" + /translation="MDYDSFDLNQAGSLRQMPGISYIRLFHASPGTPAADVYANDKLI + ARGLSYGQFTEYMPLPTGTYNVEVYPAGQKNTPILRINLPVSERQVFTLAVIGILPRI + GILPVEDEYETLAPNRVNIRLANLSPNSGDLDLALRGGPNIFTNIGYTEVSDYRSFPP + GRYSFFVRPSNSTTNLLFVPVNLLPRRNLTFYVVGSQGIQPGLQVYIPMDGTTYLRV" + gene complement(3098672..3100066) + /locus_tag="Ccel_2574" + CDS complement(3098672..3100066) + /locus_tag="Ccel_2574" + /inference="protein motif:TFAM:TIGR00457" + /note="TIGRFAM: asparaginyl-tRNA synthetase; + PFAM: tRNA synthetase class II (D K and N); nucleic acid + binding OB-fold tRNA/helicase-type; + KEGG: cth:Cthe_0070 asparaginyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="asparaginyl-tRNA synthetase" + /protein_id="ACL76902.1" + /db_xref="InterPro:IPR002312" + /db_xref="InterPro:IPR004364" + /db_xref="InterPro:IPR004365" + /db_xref="InterPro:IPR004522" + /db_xref="InterPro:IPR006195" + /translation="MSYTEIKRLFRSPDEYIGKTITVPGWVRTVRDSKTFGFIELNDG + TFFKNLQVVFEDGKLDNFKEITKLSVGSSIEVEGELVETPNAKQPFELKAKRILVESF + CPADYQLQKKRHSFEFLRTISHLRPRTNTFSAVFRVRSLAAFAIHKFFNERGFVYVHT + PLITGSDCEGAGQMFRVTTLDMKNPPRQKEGDIDYSKDFFEKETSLTVSGQLTGEAYA + LAFKNIYTFGPTFRAENSNTARHAAEFWMIEPEIAFADLKDDMILAEEMLKYVINYVL + ENAPEEMQFFNSFVDKGLLERLANVVNSDFAHITYTEAIEILEKNKDKFEYPVEWGVD + LQTEHERYITEQVYKKPVFVTDYPKEIKAFYMRVNDDNKTVAAMDLLVPGVGEIIGGS + QREERLDTLEKRMDEMGLNKEDYQWYIDLRKYGGTKHAGFGLGFERAIMYLTGITNIR + DVIPFPRTTGSCEF" + gene complement(3100190..3101200) + /locus_tag="Ccel_2575" + CDS complement(3100190..3101200) + /locus_tag="Ccel_2575" + /inference="protein motif:TFAM:TIGR00669" + /note="TIGRFAM: aspartate/ammonia ligase; + PFAM: aspartate--ammonia ligase; + KEGG: cth:Cthe_0069 asparagine synthetase AsnA" + /codon_start=1 + /transl_table=11 + /product="aspartate/ammonia ligase" + /protein_id="ACL76903.1" + /db_xref="InterPro:IPR004618" + /db_xref="InterPro:IPR006195" + /translation="MNSLIKPEGYKPSLDIRMTEVAIKKTKDYFESELAKELNLTRVS + APLFVRPETGLNDNLNGVERPVAFDVKGIGGDTVEVVHSLAKWKRMALKRYGFAPGEG + LYTDMNAIRRDEDMDNLHSVYVDQWDWEQIILKSERTEETLKTIVSKIFSVFKRTENY + LSGLYPNLQKYLPEDIFFVTTQELEDMYPELTPKERETALAKEKKAIFIMKIGDTLKS + GIKHDGRAPDYDDWALNGDIVFYYPVLDLAYEVSSMGIRVDEDSLVAQLKKAGCEDRK + NLKFHKELINKELPYTIGGGIGQSRICMFFLGKAHIGEVQASIWSDDMISECSQHNIQ + LL" + gene complement(3101377..3102585) + /locus_tag="Ccel_2576" + CDS complement(3101377..3102585) + /locus_tag="Ccel_2576" + /inference="protein motif:TFAM:TIGR00127" + /note="TIGRFAM: isocitrate dehydrogenase, NADP-dependent; + PFAM: isocitrate/isopropylmalate dehydrogenase; + KEGG: ckl:CKL_0546 isocitrate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="isocitrate dehydrogenase, NADP-dependent" + /protein_id="ACL76904.1" + /db_xref="InterPro:IPR001804" + /db_xref="InterPro:IPR004790" + /translation="MAKIKMKTPLVEMDGDEMTRVIWKMIKDILLNPYIDLKTEYYDL + GLEYREKTGDQVTTDSAIATKKYGVAVKCATITPNAERVNEYNLTQMWKSPNGTIRAI + LDGTVFRAPILVDSIKPFVKTWTKPITIARHAYGDVYKNVEYRVPEAGKAELVFTNEK + GEEVRETIHDFKGAGVIQGMHNIDKSIESFARSCFNYALDMKQDVWFATKDTISKKYD + HTFKDIFQEIYEKEYDTKFKESGIEYFYTLIDDAVARVVRSEGGFIWACKNYDGDVMS + DMVATAFGSLAMMTSVLVSPEGFYEYEAAHGTVQRHYYQHLKGQETSTNSMATLFAWT + GALRKRGELDGINELIEFADKLEKASIKTIENGVMTKDLAALSELKHIKTVNTEQFLV + EVKKTLDAMM" + gene complement(3102915..3111386) + /locus_tag="Ccel_2577" + CDS complement(3102915..3111386) + /locus_tag="Ccel_2577" + /inference="protein motif:PFAM:PF06204" + /note="PFAM: putative carbohydrate binding; + glycosyltransferase 36; glycosyltransferase 36 associated; + KEGG: tex:Teth514_0980 putative carbohydrate binding" + /codon_start=1 + /transl_table=11 + /product="putative carbohydrate binding" + /protein_id="ACL76905.1" + /db_xref="InterPro:IPR009342" + /db_xref="InterPro:IPR010383" + /db_xref="InterPro:IPR010403" + /translation="MNNILILLIITLIAIVAALIGIVLKNRPSYEVQIEDVFLNSDDL + MRHAEQLAKTQTTDKRKLGIRRVRERIERNFHRVLEMYQKFNLDISASFPVPPAAEWL + LDNFYIIEEQKSMLMKELSEVKQALPVISEGTYAGYPRVFAIAADLVSHCDGNVNEKI + IRDFIAAYQKHTFLSIQELWMLSTMLKAALLEKLWAVCDRMFTNRQDWYRAEGIVNGI + RHNNENCDDFRRHIDQLEEITPAFAEHLIKKLRKDGAKTLWMIECLDSILVQKSTSTD + SLISEDHFNQATLQVSTGNVINSFRALSGFDNTVLFEQLSEVERLLKLDPCGIYPQMD + FDSRNYYRDIVMNLGSKYDTTEINIARLCLDLAREKYDENPSITAETHVGYYLAGKGR + SAFSNKIGKYKEHSFKNCEKWYITAIVLFSVVIALIPTVNSFSRENGRLAFIVLLTGI + LSIIPASEIVVSVLNSCISRIVKPARLPKLELNDGIPEDWATMVIIPTLIPNVKRTVE + LIDNLEVFYLANKGSNIYFSLAGDFKDSDDETLSDDNEIVEAAIKRVQDLNRKYCKDA + KPIFYFFCRKRRYNEKQKKWLGWERKRGAILEFNRLLRRDRNTDYVFNSATIDSLPNI + KYVITLDADTQLPLDTAKQMVGAMAHPLNKAYFDKEKGVVTKGYGIMQPRVDVNIESA + VKSLFTRVFAGQGGIDPYTTTVSDVYQDAFGEGIFTGKGIYDVDIFTTALDKTIPENS + VLSHDLLEGSFLRTALVTDIELIDGYPAKYNSFMMRLHRWTRGDWQLLPWILGKNPLS + MLSRWKMIDNLRRSLVQPVLALIALLAVWLFRNSYREWLILALISLCSPVLNYFVQLL + IAGNYKIYIAKRRTTIITGFKAILLQLGLLLTFLPYQAELMVNAVSKSIFRVYITKKN + LLEWVTAADMEMSLKNGVGSYYRRMWFCPVYGAVILLLSILYRQSFVPVASLLFVLWV + LSPWIAYYISVPTEKNRVVLDSAGVEEVRLLARRTWCYFDEFAGPEENYLPADNYQEE + PYKGAAHRTSPTNIGLLLVSNLAARDMGYINTLDFLARIENTISTVEKMDKWNGHLYN + WYNTVTLEVLRPKFISTVDSGNFIGYLMVLHEGLSGLMESPIYDFSTIEGLFDLLEIC + NSEIEGSKAYFDTELLKKLTDSDNIEESFKNLLPAVLKLVDELDKSKRTGYWFKKLDS + NINTFNSEYTKYRGILFAPLKNVPQELKRIQQLQTKVQQLIDAMEFKYLFDPARNLFT + IGFDVEDGHASKSYYDLFASEARQTSLVAIARGEAGRQHWFKLGRKLVRVNGMKGLAS + WTGTMFEYLMPRLLIKSYSNTLIDKTYEFVVKTQIKYGLANKAPWGISESCYYAFDIG + LNYQYRAFGVPHLGLKRGLANDFVAAPYATVMALDIAPQECLENIHRFKEIGAFGNFG + LYEAVDFTNSRISKDQSYAVVKCYMVHHQGMSMLALVNFFKNNIMQERFHGNPLIKAV + DSLLQEKFPAAAMITKEYREQPVGGMRKNVNHKDTVIREYNKLSPYPGIHLLSNGNYY + LMITDKGSGYAKYHSMAVYRWINDYMQSSGAFIYIRNLNSNEFWSTTYNPTNTKPEAY + KVIFAPHKAEFVRREGNIETNTEVIISSEDNTEVRRVSIHNHSSSKRIIELTSYMEVV + LTQHEADSAHPAFSKLFVKTEYVDEYNGLLAMRRKRDDIKQTSWGYHIASTNGKAYGH + VEYETDRSLFIGRNRNLAYPRAMEPDRPLSNSVGSVIDPVFSLRIRVTVEPGESTIVN + FCMGACDNRKTAVEMLAKYSDPAAADRVIDMAWTRSIVEEGFINVDADEEKAYIKLLP + RLIFGIDRREQAEYILSNSLSQSDLWPFGISGDLPIVLVTVKSRDSFEEIDWALKLHD + FYRIKGVVFDLVILLTDEESYIQPIFEMIRDMAVSGRSYELLDKRGGIFIRNSRQMKV + EQKNLLFASAKIILDADEGIPSLMEIIEGIEKSMDVEIHTPLEPSEESSAPSLVSESE + YSGKDVVTAAELLFFNGFGGFTKDGREYVIQLSDGMSTPAPWVNVIANERFGFICTES + GGGYIWHLNSSQNKLTSWINDPITDTPSEIIYICNTQNGKVWSCTPLPVREAEPYTIR + HGFGYTCFGHKSNGINQTLTQFAATEAAVKFSILKLENITTSEMLLETAYYFRPLLGT + EFPQTSPYIVTEFDETSNAIIIDNVYSADFRGLRAFLACSESGVSYTGSRLKFFGPGM + EISNPAGMREELDSITGAGIDACAALKASIRLRPGETKEILFIVGQEKSEKVTEVISA + FRNIENAKNEMEKVKDSWNRRLGQIQVKTPDDSINLMLNGWLQYQVLSCRIWARTGFY + QAGGAFGFRDQLQDVMAVVYSLPELTKNQILLHCRHQFVEGDVQHWWHNQKMNGIRTR + YSDDLLWLPYVTCDYINATGDFEILNLEERYITSPTLNENEHERYEVPSDSGLKGTVY + DHCIRAIDKGLKFGIHGIPLMGGGDWNDGMNLVGVQGKGESIWLGWFMYCVLLRMIPI + CNKMGDVERAENYKTKADAIIEAIEREAWDGSWYRRAYFDDGTPLGSMENDECKIDSL + SQSWAAITGAAKNSRVEEAMSAVEKYLVDRRNGLIKLLTPPFYDSELNPGYIKGYLPG + VRENGGQYTHAATWVVYAFCKLGDGERAWELFSMINPVNHARTKSESMTYKVEPYVMA + ADVYAVYPNEGRGGWTWYTGAAGWMYRIGIDHLLGIKKQGNSILLNPCIPQNMNEYSV + RYVYGSSVYNITVKNPGHKNTTVERITIDGKTTETNRIELIDDGRTHEVEAVM" + gene complement(3111504..3112085) + /locus_tag="Ccel_2578" + CDS complement(3111504..3112085) + /locus_tag="Ccel_2578" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cno:NT01CX_0017 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76906.1" + /translation="MNNVVSNYRKKNLILIISIIILVGLIITLFLFIRPFYASDSSLE + SYVERVEHSKVSGFKVVKSSTYDGMRIVLYNYSKEKSDKKYLGITISKATFIKGLYRN + VSSASSNKNFGVASYSDDKSEPMVIFYGYNTNRMAKTLVLELKGKKYSNEISDSDYYI + CTFKNIKSNLENSELKFYDKNNKDISSSILKGN" + gene 3112268..3112714 + /locus_tag="Ccel_2579" + CDS 3112268..3112714 + /locus_tag="Ccel_2579" + /inference="protein motif:PFAM:PF03061" + /note="PFAM: thioesterase superfamily protein; + KEGG: cbe:Cbei_2899 thioesterase superfamily protein" + /codon_start=1 + /transl_table=11 + /product="thioesterase superfamily protein" + /protein_id="ACL76907.1" + /db_xref="InterPro:IPR003736" + /db_xref="InterPro:IPR006683" + /translation="MQQDHISWLYKYLLETYQSPILENFLQLEIVEMAEGKFICKTKI + LDKHCNIYGFVHGGTLASLSDIVMGVSCITLKKRVVTIDMNNSYIKNSPVGCSLTAVG + EVISNGKTIMRASGQIFNEDQQLLVRSQASYFVTGNFCENDYPRIK" + gene 3112797..3112979 + /locus_tag="Ccel_2580" + CDS 3112797..3112979 + /locus_tag="Ccel_2580" + /inference="similar to AA sequence:KEGG:Cphy_1044" + /note="KEGG: cpy:Cphy_1044 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76908.1" + /translation="MKSKSNCDCCINYLYDEEYGSYYCQVNLDEDDMLRFMTKSFDSC + PYFQFNDEYKTVRKQI" + gene complement(3112984..3113706) + /locus_tag="Ccel_2581" + CDS complement(3112984..3113706) + /locus_tag="Ccel_2581" + /inference="protein motif:TFAM:TIGR02493" + /note="TIGRFAM: pyruvate formate-lyase activating enzyme; + PFAM: Radical SAM domain protein; + KEGG: cth:Cthe_0506 pyruvate formate-lyase activating + enzyme" + /codon_start=1 + /transl_table=11 + /product="pyruvate formate-lyase activating enzyme" + /protein_id="ACL76909.1" + /db_xref="InterPro:IPR001989" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR012838" + /translation="MEIKGRIHSFETFGTVDGPGIRFIVFLKGCPLRCKYCHNRDAWS + SEGAKLYSPQEVLKEIQKYRNFIDASHGGITVSGGEPLIQHEFVKELFKLCREAGIHT + AVDTSGYVNVEDVKDTLEYTDLVLLDLKQANAQKHLELTGVENKRIKLFTTYLGEIGK + PVWIRYVLIPGYTDGEEDLLAAYNYLKGFKNIEKIEVLPYHIMGKAKWEKLNVQYPLE + GVPSPTQEEVDRAKNILTTGKP" + gene complement(3113820..3116048) + /locus_tag="Ccel_2582" + CDS complement(3113820..3116048) + /locus_tag="Ccel_2582" + /inference="protein motif:TFAM:TIGR01255" + /note="TIGRFAM: formate acetyltransferase; + PFAM: formate C-acetyltransferase glycine radical; + pyruvate formate-lyase PFL; + KEGG: cth:Cthe_0505 formate acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="formate acetyltransferase" + /protein_id="ACL76910.1" + /db_xref="InterPro:IPR001150" + /db_xref="InterPro:IPR004184" + /db_xref="InterPro:IPR005949" + /translation="MDPWRYFKNGNWSEEIDVRDFIINNYIPYKGDDSFLKGPTEKTQ + KLWKKVSGILDEERENGGVLDVDTKIISTITSHEPGYIDKDLEKIVGLQTDKPLKRGI + MPFGGIRMVVKGGEAYGKKIDESVVKLFTEYRKTHNDGVYDVYTPEMMRAKKAGIITG + LPDAYGRGRIIGDYRRVALYGVDRLIGDKQKQLTSLEMDYMDSETIQEREERKSQIKA + LEYLKQMAEMYGFDISRPAETAQEAFQWLYFGFLGAVKEQNGAAMSLGRVSTFLDIYI + ERDMKEGTLTEEEAQELVDHFVMKLRLVRFLRTPEYEKLFSGDPTWITESIGGMGLDG + RTLVTKNSFRMLHTLFNLGHAPEPNMTVLWSVHLPDGFKKYCSYVSINTSSIQYESDD + IMRYYWGDDYGIACCVSAMRIGKQMQFFGARCNMAKALLYAINGGRDEKSGVQVGPIM + QAIETEYLDYDDVIKRFDAVLTWVARLYINTLNIIHYMHDKYAYERLQMALHDKDILR + TMACGIAGLSVVADSLSAIKYAKVKVIRNEEGLAVDYDIEGDYPKFGNNDDRVDNIAV + MLVKSFMEKLEKQRTYRHSVPTLSILTITSNVVYGAKTGNTPDGRKAGEPFGPGANPM + HGRDLNGALAVLKSISKLPYQFAQDGISYTFSIVPKALGKEEDTRINNLVSLLDSYFK + EGGHHININVFEREMLLDAMDHPEKYPQLTIRVSGYAVNFIKLTREQQLDVINRTIHE + NI" + gene complement(3116273..3117742) + /locus_tag="Ccel_2583" + CDS complement(3116273..3117742) + /locus_tag="Ccel_2583" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bte:BTH_II0957 outer membrane protein, + putative" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76911.1" + /translation="MKFNKNKLLSFLMVVSMSLAIICPMNVLAAEKTESKMHVEYAPN + KEIKSQEAEQVTKLISTKNTEKPTKLEKKVDISSAKKGHLQNGTGTAKVAASESAVTA + QSTVVAGTVSGYLTATSDAELYSLSLQPGIYLQAQLTTPANPNLDYDLYLLDSQGNIL + CGSEYFTQINGTNGTLPEALGYITSGDATATYYLYVHSSNGGSVSEAFTLDYSVSGAC + DNYEIDEQASQALAFTYGTGGAYINARNLSSPIDNDWYVVTVPSSRIYDKLQITATTP + SANTCSVQIYKNAASAGFAMQAVSSNGNNFSVGTGTYYIRVSNAKTMEEYNDTDIQNY + TLTVTPILRADTITITDLNGTEGLNNVVNYPGYGAHFRTGTGTLTISGYATVKDPATN + VTYAVAGVGVTGMYYNPYWDRNNTPSCAVRTGTSLTDSSGRFDVSIGLPSGVGGEMYV + STRSYHYFDVCGVQAYLSDNTNVRDEETIFHLAYTIYHG" + gene complement(3118061..3118435) + /locus_tag="Ccel_2584" + CDS complement(3118061..3118435) + /locus_tag="Ccel_2584" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76912.1" + /translation="MEILKGLGILNASFLVPIIVVILVLFIIAKVAKKLLKLGILIAV + IAIGAVVYFNLPSFTVDNGTATLKLMGQERTISSKNAKVITEDKDGKKQTVLVSGTER + IVLPFSKDFAEKFIMEKLKNSK" + gene complement(3118494..3119816) + /locus_tag="Ccel_2585" + CDS complement(3118494..3119816) + /locus_tag="Ccel_2585" + /inference="protein motif:PFAM:PF01435" + /note="PFAM: peptidase M48 Ste24p; + KEGG: cac:CAC0557 Zn-dependent protease with chaperone + function" + /codon_start=1 + /transl_table=11 + /product="peptidase M48 Ste24p" + /protein_id="ACL76913.1" + /db_xref="InterPro:IPR001915" + /translation="MTKDFRKVIIVFISLFVIFAAAVTVSEIVNYNHIIRTYPQPGQI + VVPDNVQVTMPSQAAFDFQKSKVTTWLIRLFLSFAVPAFFIFSKLTIGIRNWAAGKAR + RWISIIILYFIAYSVIDTLIYLPLDIYTGFFRMHQYGLSNQNFAQWLIDTIKNFIVNT + TLTAAIIWVPFLIIKKSPKRWWLYIALISIPYLFIVSFIQPVVIDPIFNQYKPVEDSQ + LSLKIEDLLHKTHIGNCQVYQVDKSKETNLMNAYMTGVFNTKRIVLWDTTINYLDTDE + VLGVTAHEMGHYLMGHVWKSIVFGGLGSIIFLYLIYRMIGYILRKTKGRLGFSKVSDI + AAFPLIILLINLMMFFTTPITNAFSRSMEIEADRFELELTRNNFATATATVKLHQQSL + TMPEPGIVYMLWTYDHPTFKSRVDFANNYRPWENGQMLKYQKFIKEGK" + gene complement(3119908..3121038) + /locus_tag="Ccel_2586" + CDS complement(3119908..3121038) + /locus_tag="Ccel_2586" + /inference="protein motif:TFAM:TIGR01975" + /note="TIGRFAM: isoaspartyl dipeptidase; + PFAM: amidohydrolase; Amidohydrolase 3; + KEGG: tpd:Teth39_1494 isoaspartyl dipeptidase" + /codon_start=1 + /transl_table=11 + /product="isoaspartyl dipeptidase" + /protein_id="ACL76914.1" + /db_xref="InterPro:IPR006680" + /db_xref="InterPro:IPR010229" + /db_xref="InterPro:IPR013108" + /translation="MFRLLKDATVYSPEYLGKKDILLCFDKVALIEDNVNPAGFKDIE + IVNCDGKIIFPGFIDLHVHITGGGGEGGFTTRTEEAQAEDILKYGITTVVGVLGADGV + TRNMPNLYAKARQLELEGLSTYIYTGSYQVPVITLTGSVQSDMVFVDKVIGVGEICLA + DSRAFEPSFDEISRIAAQTRNGAIISGKAGLVHFHLGQGESAMEYMFRLSNETLIPKQ + HILPTHVNRTKGLFNRALEYLKQGGNIDLTAGFIPSGSDPECVATYDALKTIIDNDLD + FSGVTISSDAYGSVPTFDENGNVVSSETVNCKILFDEVRTAIKDRGIPVETAISIITK + NAAERLKIDNKKGTLQVGKDADCVICDSGLNIVNVISKGKMY" + gene complement(3121079..3121801) + /locus_tag="Ccel_2587" + CDS complement(3121079..3121801) + /locus_tag="Ccel_2587" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cno:NT01CX_0934 ABC transporter" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76915.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MINVKNLHKTFGSLQVLRGIDVTIERGEVVVVIGPSGSGKSTFL + RCLNLLEQPTGGEIIFEGINITDKNNDINKQRQKMGMVFQNFNLFPHLSIIDNITLGP + VKLKNQTPEQAKQNAMSLLKRIGLEEKANNYPAQLSGGQKQRIAIVRALAMSPGVMLF + DEPTSALDPEMVGEVLEVMKELAAEGMTMVVVTHEMGFAKEVGTRVLFMDEGKIKEDA + PPIEIFTNPKDERTKEFLSKIL" + gene complement(3121794..3122459) + /locus_tag="Ccel_2588" + CDS complement(3121794..3122459) + /locus_tag="Ccel_2588" + /inference="protein motif:TFAM:TIGR01726" + /note="TIGRFAM: polar amino acid ABC transporter, inner + membrane subunit; + PFAM: binding-protein-dependent transport systems inner + membrane component; + KEGG: cbb:CLD_2608 His/Glu/Gln/Arg/opine ABC transporter + permease" + /codon_start=1 + /transl_table=11 + /product="polar amino acid ABC transporter, inner membrane + subunit" + /protein_id="ACL76916.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR010065" + /translation="MDFGFLSEYWYYFVSGTVNTIVIAILTVILGVIIGTGLALMKIS + RNKILRAIASSYIEFIRGTPLLVQITLFFYLISLPEFHIFGLAMDRYIPGVIAMSVNS + GAYVAEIIRAGIQAVDKGQMEAARSIGFTSGQAMRYIVLPQAIRNILPALGNEFVVVI + KESSILSVISITELMRSSDIVKAAIYRPFEPLIVTACIYFVLTFSLTRLLGFAERRMR + ASD" + gene complement(3122558..3123364) + /locus_tag="Ccel_2589" + CDS complement(3122558..3123364) + /locus_tag="Ccel_2589" + /inference="protein motif:PFAM:PF00497" + /note="PFAM: extracellular solute-binding protein family + 3; + KEGG: aoe:Clos_0183 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 3" + /protein_id="ACL76917.1" + /db_xref="InterPro:IPR001638" + /translation="MMKGMLKKLFCLFIVAAIGISIAGCGGGETMKRIEKTGKLVVGT + SADYAPYEYHMLVDGKDTIVGIDISIVEEIAKDMGVQLQIVDTDFNGLLSSLNTNKVD + IVIAGMNPDEERKKSVDFSKIYYEAKQGVMVRAEDKDKYKTVADLKDKKVGAQLGTTQ + EKIVKEQIEGVNLVSLGKIPDLVMELKNKKIDALVVEFPVASGYVKNNDDLALTDIPV + KDDTGGSAIAVKKGNSNLVEQINKSLDRLMKDGLIDKFVQEANEKNVTTK" + gene 3123715..3124638 + /locus_tag="Ccel_2590" + CDS 3123715..3124638 + /locus_tag="Ccel_2590" + /inference="protein motif:PFAM:PF03734" + /note="PFAM: ErfK/YbiS/YcfS/YnhG family protein; + KEGG: amt:Amet_3113 ErfK/YbiS/YcfS/YnhG family protein" + /codon_start=1 + /transl_table=11 + /product="ErfK/YbiS/YcfS/YnhG family protein" + /protein_id="ACL76918.1" + /db_xref="InterPro:IPR005490" + /translation="MLKRLLLLGTLIVAILFESTAVCGAADSKDKNQYPAVSQSAVKI + DTTVLDKTLDTQKKQQEAQRKKDEAAAKEKLRKKVAQLQKDITANTYLKYIKQLGYYK + KASSDEKLNIRNALLLFQSNHNMSVTGAYDTATKNMLVQRLSSNKFVYLDKVTKAPTK + GKWVTVNKTTRVLTLYEGTKVLKKYAVAVGNPASLTKSGKFIVTSKLKNPDWGGGGFA + DPVKGGTPQNPLGTRWLGINRTDGSYGIHGTNSFYSIGKYISHGCMRMSNHCVEELFP + LVPMKAPVWVGTQTELKNWSITQPQFKQQAS" + gene 3124789..3125874 + /locus_tag="Ccel_2591" + CDS 3124789..3125874 + /locus_tag="Ccel_2591" + /inference="protein motif:TFAM:TIGR00978" + /note="TIGRFAM: aspartate-semialdehyde dehydrogenase; + PFAM: Semialdehyde dehydrogenase NAD - binding; + Semialdehyde dehydrogenase dimerisation region; + KEGG: cpy:Cphy_0426 aspartate-semialdehyde dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="aspartate-semialdehyde dehydrogenase" + /protein_id="ACL76919.1" + /db_xref="InterPro:IPR000534" + /db_xref="InterPro:IPR005676" + /db_xref="InterPro:IPR012280" + /translation="MSKLKVGIIGGTGMVGQRFIALLENHPWFQVVSIAASEKSAGKT + YVEAVGNRWKMSTPMPENVKNIIVKNATEQVKEICDEVDFVFCAVDMKKDEIKKLEEE + YAKNETPVVSNNSAHRWTSDVPMLIPEINADHVKVIDAQRKRLGTKYGFIAVKPNCSI + QSYVPALTPLMKYGIKNVVATTYQAISGAGKNFTDWPEMVDNVIPYIGGEEEKSEQEP + LKIWGNVNNGEIAKATSPLITTQCIRVPVTDGHLAAVFVSFENKPTKAEILESWKNFK + GEPQLLELPSAPKQFVKYFEEDNRPQTKLDRDTENGMGITAGRLREDTLYDYKFVCLS + HNTVRGAAGGAVLMAEYLKSQGYINAK" + gene 3126030..3128492 + /locus_tag="Ccel_2592" + CDS 3126030..3128492 + /locus_tag="Ccel_2592" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: swo:Swol_0580 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76920.1" + /db_xref="InterPro:IPR000595" + /translation="MGIKSDYSGQYLSGQNEMIIYEGDRASSVILMLQGKLDVLLSPH + DTIPDNNETAADNSCRLFTLEQNTFLSVNDIFKSGKNSFSLKSQESCNLYCFPATSAN + GIRGIMNTQKDYSTYIVSSLATLIDLSYDSYQKLLPICRSLDILAKNLSVYYWAIKDK + YYFNYSPDIENLDHYKNVYQDAKDSGTRFFPVDTDSLSNTYIYENSENTENEIDDAGF + EYFSKLLNVPLEQRKGFFNSENYICEYHIQKGSDLMETLVAEIKSKLSQLYNNIYCLY + TAPVSLMSSYGKIAVDSKDDKEAALTLYSIIEQSAVIIANCIDRLQNEFDGFSSVNTS + DINGLVKTVKEKASISRIPQNDDGTYSGNELPKELENSLDKILTICGCTQDFKDSFNK + RLSHFRALKDKSSSDSEARELRSSLTSDFFAVYETAFKKAQESGHYPKVISMFLNFGY + MDERLVTKEQAISLYRLCDKEYSKSKFTIYSSIKWLQEIYNNRKEPSINDFGQDYYDI + FRDMKKRKMVTDLDKPAYEKDFNGKVSFEINNMLKTNQKVCHGHMSSYFPILHKDIIT + RDLEKSVVTPHRITDAIMNILETDFSVFYREIWYKNEKKSIEKEPIMKEILPDIIIVP + TFGSRASMWQEITGRGRNTPGRFIFPAFTDENIYDMVLKLMGTFRWELCRTMMGVSWN + DITEKSLTSEYTDYIQFYKKNHDLSEEAKAKIKVQIQKNRNMMKDIFTSDYNIWINYE + SKGILRLNKIARSILFRYCPLPKEQRTNLAKQPAFSDLSMQLNNSRAKTAKSLTSKYN + KLFKNGPMDEDMEANLIFYRDL" + gene complement(3128573..3128953) + /locus_tag="Ccel_2593" + CDS complement(3128573..3128953) + /locus_tag="Ccel_2593" + /inference="protein motif:TFAM:TIGR00004" + /note="TIGRFAM: endoribonuclease L-PSP; + PFAM: Endoribonuclease L-PSP; + KEGG: mta:Moth_1495 endoribonuclease L-PSP" + /codon_start=1 + /transl_table=11 + /product="endoribonuclease L-PSP" + /protein_id="ACL76921.1" + /db_xref="InterPro:IPR006056" + /db_xref="InterPro:IPR006175" + /translation="MELEIISTDKAPAAIGPYSQAVKCGNTIYTSGAIPVDPASGNVV + AGGVAQQAEQAIKNLAEVLKGAGAGLEKVVKTTVFIKDMNDFGVINEVYKKFFTDNFP + ARSCVEVARLPKDVLIEIECIAVL" + gene complement(3128975..3130273) + /locus_tag="Ccel_2594" + CDS complement(3128975..3130273) + /locus_tag="Ccel_2594" + /inference="protein motif:TFAM:TIGR00407" + /note="TIGRFAM: gamma-glutamyl phosphate reductase; + KEGG: cth:Cthe_0262 glutamate-5-semialdehyde + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="gamma-glutamyl phosphate reductase" + /protein_id="ACL76922.1" + /db_xref="InterPro:IPR000965" + /translation="MDIRQLCGNAGVASVKMAALSGEVKNNALMKIADALLANSKRII + EANQHDLERSEKENLASPLLKRLKFDEKKINDVVEGIKSLMALEEPIGKTLLANKLDD + ELELYKVTCPIGVIGIIFESRPDALVQISTLCLKSGNCVLLKGGSEAKETNRVLTGVI + EEATVAAGLPKGWIGLLESRDDVNEMLKMDQFIDLIIPRGSNDFVRYIMDNSRIPVMG + HADGICHVYVDESADLEMAKKITVDSKTQYVAVCNATETLLVDRAVAKEFLPGLKAEL + DKKNVEIFGDEETADIIEVKPASDQDWATEYLDYIISIKIVAGMDEAIKHIITYGSGH + TDCIVTKDKAKAVNFMNLVDSGNVFWNASTRFSDGFKYGFGAEVGISTSKLHARGPVG + LDGLLSYKYMLIGNGQIVDDYATNKRQFKHERMNKQIDEI" + gene complement(3130283..3131779) + /locus_tag="Ccel_2595" + CDS complement(3130283..3131779) + /locus_tag="Ccel_2595" + /inference="protein motif:TFAM:TIGR01311" + /note="TIGRFAM: glycerol kinase; + PFAM: carbohydrate kinase FGGY; + KEGG: tte:TTE2002 glycerol kinase" + /codon_start=1 + /transl_table=11 + /product="glycerol kinase" + /protein_id="ACL76923.1" + /db_xref="InterPro:IPR000577" + /db_xref="InterPro:IPR005999" + /translation="MQKRYVLALDQGTTSSRAVIFDSLSGNIAGIKNLPLQQFYPRPG + WVEHDADDIFRDQMSAINGAIKMAGINTESIACIGITNQRETVVVWDRNTGKPVHRAI + VWQCRRSSEICDSLKTAGLRDKIKSKTGLVIDAYFSGTKIKWILDHVEGAREKAQRGE + LLAGTIDSWLIWNLTGGRKHITDYSNASRTMLYNINDLKWDDELLGELGIPACMLPEV + VSSSGVCAYTHEKILGERIPISGIAGDQHASLFGQACFKRGDAKNTYGTGCFILMNTG + KTPVVSKNNLITTIAWGIDSEVEYALEGSVFNAGAAIQWLKDELGIIKTAHESDIEAK + KVPDTGGVYVVPAFTGLGAPYWDMYARGTILGLTRGTNKRHIIRATLESIAYQCRDVL + EAMKLDSGIELNALKVDGGVSASNFLMQFQADVLNISVQRPVIRETTALGSAFLAGLG + VGIWTSKEEIEQAWNLDKAYMPGENKKYYDSLYLRWKKAVEKSMKWDI" + gene complement(3131951..3132262) + /locus_tag="Ccel_2596" + CDS complement(3131951..3132262) + /locus_tag="Ccel_2596" + /inference="protein motif:PFAM:PF05437" + /note="PFAM: branched-chain amino acid transport; + KEGG: cth:Cthe_1427 branched-chain amino acid transport" + /codon_start=1 + /transl_table=11 + /product="branched-chain amino acid transport" + /protein_id="ACL76924.1" + /db_xref="InterPro:IPR008407" + /translation="MTDTLIAVLLMALVTYFPRVLPMAVFKNKIKSRFITAFLGYVPY + AVLGAMIFPDILTSTGNLVSAVIGLGVAVILAYFEKSLLKVAVCAIAVVYVCEMIFSR + A" + gene complement(3132255..3133001) + /locus_tag="Ccel_2597" + CDS complement(3132255..3133001) + /locus_tag="Ccel_2597" + /inference="protein motif:PFAM:PF03591" + /note="PFAM: AzlC family protein; + KEGG: cbt:CLH_2216 AzlC family protein" + /codon_start=1 + /transl_table=11 + /product="AzlC family protein" + /protein_id="ACL76925.1" + /db_xref="InterPro:IPR011606" + /translation="MLTKQEKVVNSKHTVLHDFIDGSKQSIPIALGYFPVSFTFGLMA + VKGGIPVWIVILISMTNLTSAGQFAGTNLIIAGAGLAEITITTFVINIRYMLMSLSLS + QKIVQGIPGYKRWIMSFGITDETFTVAAMQKKEITFSFMTGLELLPYIGWAAGTAVGA + IVCTILPEALQNSMGIALYAMFIALVIPAAKKSKAALIVASCAIFISSVIKWLPVFSA + VSGGWRIIIATFIACTIGAKLFPMEDTAND" + gene complement(3133134..3133418) + /locus_tag="Ccel_2598" + CDS complement(3133134..3133418) + /locus_tag="Ccel_2598" + /inference="similar to AA sequence:KEGG:CLI_3231" + /note="KEGG: cbf:CLI_3231 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76926.1" + /translation="MDNLVSDNIKEGLLNIFNQRFNIDFTKWDKDYYTKNLLGEDIQL + SARDLLYIYFDVKSQFNITIPQEEIANGKFSTFGGIFEIVLSQIKLRKIS" + gene complement(3133433..3134560) + /locus_tag="Ccel_2599" + CDS complement(3133433..3134560) + /locus_tag="Ccel_2599" + /inference="similar to AA sequence:KEGG:CLI_3233" + /note="KEGG: cbf:CLI_3233 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76927.1" + /translation="MGKNERLLIYPYNVEFTPVLRHRSLLTEYDISCLVSPNGWGFTG + KDAGIADSGPDIGISVSADFEKSLDLCDTVMIVESHLPFDFDKYIFNKIKVAVRSKKN + IICLLNLNKEAIKEIASLCNCEGVYFKYFDGNQNVLPADIIIENESIEEIDTPVILTL + GITEKTNKFEIQLALREKIQKAGYKISQIGTRPYCEMMGFHPFPSFMYGNAISDVNKV + LMFNRFIKKIEETEEPDIIIIGIPGGIMPFNREFTNKFGLVAFEISQAITPDVVIASL + LYEDYKPEGFDTYMNLVKYKLGFEVDFFNIANMQFDWKRANQEHVKSYTSLDYKFIDE + KKTKYTKSKIPVFNILNKDDSDTIAKQTIEKLTGYGSVQIV" + gene complement(3134587..3136047) + /locus_tag="Ccel_2600" + CDS complement(3134587..3136047) + /locus_tag="Ccel_2600" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + KEGG: cbf:CLI_3234 radical SAM domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76928.1" + /db_xref="InterPro:IPR000385" + /db_xref="InterPro:IPR007197" + /translation="MIVLDSFIHLFKTPGGHYLYDVNKNVILGLSEEQYKILDYYRKS + DDADKCTSEFSAQAIESINHLRDLGFLSEKRPKEMYHPVNDTILSHLNNKVNMITLQI + TKQCNLRCKYCVYSGNYENRVHSSGKMTLDTARKGIDFYIEHSKDNEHSFLAFYGGEP + LLEFEFIKDCIEYFEEKAEGKNIHLNLTTNATLLTEEIVDYFHKHNVHLLISLDGSSE + VHNRNRVYRDGAKGTFEKVMENLEMIKTKFPDYLSTNIAFNAVLDPQNEFSCVNNFFT + GFELAKEASIMASEITDLYRKDSVKTSGNYISEIEYEIFKIFLSKLGYLDEKYTSKLL + SRQYNDRKTRYRLLQMRQEIPDKVHHGGPCVPGAQRLFVDVEGNFYPCERVSEASPQM + KVGNIDDGFNIDKIRTLLNIGKISENKCINCWALTFCNLCAVAADENDGLSTEKKVSR + CSNVIYTADSILKDICTLREFGAELGEEIYAFDMAE" + gene complement(3136127..3136288) + /locus_tag="Ccel_2601" + CDS complement(3136127..3136288) + /locus_tag="Ccel_2601" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76929.1" + /translation="MKKLGKKLHSYQGTIEAYADCYSYCHCDYSACGNTSAMVNLMAN + VRNFVNNNM" + gene complement(3136649..3137419) + /locus_tag="Ccel_2602" + CDS complement(3136649..3137419) + /locus_tag="Ccel_2602" + /inference="protein motif:PFAM:PF01987" + /note="PFAM: protein of unknown function DUF124; + KEGG: cts:Ctha_1472 protein of unknown function DUF124" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF124" + /protein_id="ACL76930.1" + /db_xref="InterPro:IPR002838" + /translation="MADVIDYKIYGDDMQIVEIELDPSEGVRAEAGAMMYMEDDIMMQ + TSTDGGAFKGFKRMLTGESFFITTFYNAGASKQHVAFSAPYPGKIIPLDLSRLGGNFL + CQKDSFLCAASGVDIEIAFTRKLGAGFFGGEGFILQRLVGDGLAFVHSGGTIIQKNLL + PGETLRVDTGCLVAFSPSVDYDIESVRGFKNALFGGEGLFLAKLTGPGIVFLQSLPLA + RLSDRLTSAGARHRDQQSGVAGLGGGILGGLFGGDNKF" + gene complement(3137481..3138497) + /locus_tag="Ccel_2603" + CDS complement(3137481..3138497) + /locus_tag="Ccel_2603" + /inference="protein motif:TFAM:TIGR00557" + /note="TIGRFAM: 4-hydroxythreonine-4-phosphate + dehydrogenase; + PFAM: Pyridoxal phosphate biosynthetic protein PdxA; + KEGG: cbl:CLK_1647 4-hydroxythreonine-4-phosphate + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="4-hydroxythreonine-4-phosphate dehydrogenase" + /protein_id="ACL76931.1" + /db_xref="InterPro:IPR005255" + /translation="MHKPVIGIPMGDPAGIGPEIIVKALANNEIYKVCNPLVIGDAGV + IEKAARICGIQTKVNPVAGADMPASDKSTINVVDLKIINPDRLEYGKVQAENGRASFE + YIKKSVELAMEGKLSAIATTPINKPSLKAAGIEFIGHTEILAGLTDTKDPLTMFEVRG + MRVFFLTRHVSLRKACDMVTKERLLDYVERCTQALQSLGITGGTMAVAGLNPHSGDNG + LFGVEECENITPAIVEAKRRGFNVEGPVGPDSVFHLALIGRYNSVLSLYHDQGHIATK + TLDFERTIAITLGLPFLRTSVDHGTAYDIAGKGIASEISMSEAILLAAKYSVPYSQWV + KRTD" + gene 3138652..3139032 + /locus_tag="Ccel_2604" + CDS 3138652..3139032 + /locus_tag="Ccel_2604" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; + KEGG: nth:Nther_0732 transcriptional regulator, GntR + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL76932.1" + /db_xref="InterPro:IPR000524" + /translation="MIQLDFKDPRPLYEQIKDKIKELVINGAVEPDDKILSVRELAQT + LTINPNTIQKAYKDLEAEGIIYSVKGKGNFIAPLDKSSVDSKRKELLLSIQKTVEELI + FLHTPQQEVIDVIQNTYKKKEASK" + gene 3139029..3139928 + /locus_tag="Ccel_2605" + CDS 3139029..3139928 + /locus_tag="Ccel_2605" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: amt:Amet_1324 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76933.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MIDVKSLSKSYGDFKALDSLDIHIKQGSVYGLLGPNGSGKTTLI + KHLTGIYKNESGSIAIDGKSVFDNPETKSKIVYISDDLFFFSQYSIKEMASFYASMFP + GWSWERFNTLKQVFPIDIKRRVVKLSKGMQKQVAFWLGISAKPKVMILDEPVDGLDPV + MRKKVWNLILQDVSEYGTTVLVSSHNLRELEDICDHVGILYQGKMMVERELDNMKSDI + HKLQLAYSGNTPDNLFKDGEVLHRTQNGSVLQLIVRGNKDAIVSHVKSTNPVVMDILP + LSLEEIFIYELGGKGYEIENILI" + gene 3139903..3141582 + /locus_tag="Ccel_2606" + CDS 3139903..3141582 + /locus_tag="Ccel_2606" + /inference="similar to AA sequence:KEGG:Amet_1325" + /note="KEGG: amt:Amet_1325 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76934.1" + /translation="MKSKTSLFKKGLILSDLKRYWWVSVIFSLGLILAMPLAHYMQKF + NINDDKSNIQFIEELISRELNFDSGISTLFPVVIPVIIAVLAYRYIQKGRQASLYHSL + PVTRATLFFNSLVSSLILYILPLLINVFVMGLLNSFSFLSDFYTMGLIFKWLGLAVFY + GILFMSMTIFVGMFTGSSVAQIVFVYILNLLPLFFFEVIRANLSSFLYGFATYSNTGF + YRKLPMTMLLSNSIELSPQMVVGYIVLSVLLLAGGLVAFKLRRPETAGDIITFKPIRP + VFIYGVTVCATLVGGSYFLNISRSSLPFAIFGYFLSALIGYVVVQMITNKTFKVLNTY + KGYLGYALVLIIILLGIKFDIFGYVNKVPAADEVANVYMGYNIYWWENRDSENYIGPS + HDNTTLYKETANIKSITELHKMILENRSKEGSSTYIAYTLKNGKKVVRYYTLDTNLYA + SALGPIYESKEYKNGRFPVLHQEADDIKYIQVRDYVNNKQPIVISDKEKLKSFITEIR + KDINSFNYEQLSNQADDKLWIEISDNNDRIISYGVNSNYMNTLKWFSDNDK" + gene complement(3141651..3142370) + /locus_tag="Ccel_2607" + CDS complement(3141651..3142370) + /locus_tag="Ccel_2607" + /inference="similar to AA sequence:KEGG:CLI_1290" + /note="KEGG: cbf:CLI_1290 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76935.1" + /translation="MKLKKVSKYMLSEMKNSILIFYLVILFITIFFSVSASDGNTSFN + GMEMASSIFLFVLGLNSFKTNYLFLLSNGIPRRTQFRGFFLAAISVAAGIAVINRIFE + ALFTRVINYNNMFDMIYKQVTQSPVNSTISISWSITVSMFAITLGYFITLAYYRMAKT + LKIIISIGVPAFFFVILPYFAFKWSSIETINRVESTIRTLFGVNGEYRPMNAVVTFLV + LTVALSALSYLLIRKAPVKEN" + gene complement(3142385..3143236) + /locus_tag="Ccel_2608" + CDS complement(3142385..3143236) + /locus_tag="Ccel_2608" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpy:Cphy_0186 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76936.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MSQMEIRSITKKFGDMTALDNISLKLEENKIYGLLGRNGAGKTT + LLNLITNRIFPTDGEILVDGENVIENERVLSKIYFMTENNYYPENMTVKQAFKWSSEF + YPDFDSEYAADLCEKFSLNIKQKIKSLSTGYTSIFKMILALACNVPFVLLDEPVLGLD + ANHRDLFYKELLINYSEKPKTIVISTHLIEEAADIIEDVIIIKSGKLIVKEPVENVLS + QGYAITGSVSAVDSFTNDKNVLGADTIGGLKCAYVLGSLIKAGIPDGLEVTKPDLQKL + FIHLTNR" + gene complement(3143233..3143601) + /locus_tag="Ccel_2609" + CDS complement(3143233..3143601) + /locus_tag="Ccel_2609" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; + KEGG: aoe:Clos_0645 GntR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL76937.1" + /db_xref="InterPro:IPR000524" + /translation="MNLDFSNDKPIYLQLSEELEDAIIAGAYEEETQIPSTTEISVNY + KINPATALKGINILVDNGIVYKKRGLGMFVAKGAKEKILEQRKIDFFESYIKSLVTEA + KKLSISKEEILKMLERGFEI" + gene 3143812..3144804 + /locus_tag="Ccel_2610" + CDS 3143812..3144804 + /locus_tag="Ccel_2610" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: oih:OB1131 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76938.1" + /translation="MPNLVTHYLCGLEAIKLIDNKECKELIQRNINVFNLGVQGPDIL + FYYGIWPWSPKTQYGPIGQEFHISRVNLVFRKIIDYISAQKGYIKDTLTVYFMGFLCH + NCLDSMTHPYIFYQSGFKTADDPRTNLYIYYHRRFETSIDVLMCQRLLNKKVHEIRID + RLISVTSKERKIIGEMYESVIDSVFNYKIPGKYISKAIKDMITVEKILRDPHGVKRRF + VAFFDHIIYGYPLFSSLIFPLKLKDGLDYLNLARKEWALPYDKNHKSTLSFLDMFKEA + CDKTQRYCQVLYSTITGDKSYIPYALKLFGNISYTTGTDCDLSVKFKHHDIIFK" + gene complement(3144797..3145927) + /locus_tag="Ccel_2611" + CDS complement(3144797..3145927) + /locus_tag="Ccel_2611" + /inference="protein motif:PFAM:PF02595" + /note="PFAM: glycerate kinase; + KEGG: cth:Cthe_1592 glycerate kinase" + /codon_start=1 + /transl_table=11 + /product="glycerate kinase" + /protein_id="ACL76939.1" + /db_xref="InterPro:IPR004381" + /translation="MKKFIISPDSFKGSMSSIEICGIIKTKIKEFYPHSEVVEIPIAD + GGEGTSDCFIQLLGAEKVCIEATGPYNEKLIGYYARTGDTAVLETAMFAGLTLAEGRL + NPASTTTFGVGTMIRHAVENGCREIIIGLGGSCTNDAGTGMASALGVRFKNKEGEEFI + PTGATLGEIAHIDTILADRFLKDCKITAMCDIDNPMYGKTGAAYVYAPQKGADGEMVL + LLDKNLMELADTIKSQLGVDVSEIPGSGAAGAMGAGIVAFLNGSLKPGIETILDLIGF + DDKVKDADIIFTGEGKIDGQSLRGKVVIGVAARAAKKDVPVVAIVGDVGDGAEAVYDM + GVTAIVSINRVALPFEKAKARSKKDLADTMDMILRLMKNRVI" + gene complement(3146030..3147013) + /locus_tag="Ccel_2612" + CDS complement(3146030..3147013) + /locus_tag="Ccel_2612" + /inference="protein motif:TFAM:TIGR02482" + /note="TIGRFAM: 6-phosphofructokinase; + PFAM: phosphofructokinase; + KEGG: cth:Cthe_1261 6-phosphofructokinase" + /codon_start=1 + /transl_table=11 + /product="6-phosphofructokinase" + /protein_id="ACL76940.1" + /db_xref="InterPro:IPR000023" + /db_xref="InterPro:IPR012828" + /translation="MSDIKTIGVLTSGGDAPGMNAAIRAVVRTGIYYGLKMLGIRKGY + NGLVTGDIFDMSARDVSDIIHRGGTILQTARCKAFTTDEGMQKAMSISKAFGIDAIVT + IGGDGSYRGARDFSKFGMKVMGLPGTIDNDIASSEYTIGYDTAMNTVQDALDKIRDTA + YSHERCSVLEVMGRRAGHIALNVGIAGGAEVILLPEREFDFDKDIIRKIIQGRNNGKK + NYIIILAEGVAEKIGGALELSKKIEDLTGIETRGTVLGYIQRGGSPTIQDRVMASVMG + AKAVKLLKDGVYNRIISVKDSKVIDLDIDEALAMKKDIDNDLLELSNVLSI" + gene complement(3147133..3148035) + /locus_tag="Ccel_2613" + CDS complement(3147133..3148035) + /locus_tag="Ccel_2613" + /inference="protein motif:TFAM:TIGR00163" + /note="TIGRFAM: phosphatidylserine decarboxylase; + PFAM: phosphatidylserine decarboxylase-related; + KEGG: cpf:CPF_0033 phosphatidylserine decarboxylase" + /codon_start=1 + /transl_table=11 + /product="phosphatidylserine decarboxylase" + /protein_id="ACL76941.1" + /db_xref="InterPro:IPR003817" + /db_xref="InterPro:IPR005221" + /translation="MIQIYNRKTKQYDIEQVAGGRLLNTLYTTGRGRLGLKLLVKRKI + YSSLTGFFCDSKISRKTIKGFAEKFSIDTNECESKVEEFKSFNEFFARKLKPSARVFD + TSEEKLLSPGDGRLQAWENIDTEKLLQIKGMTYSLSELLQDEKLAREYSGGTYLILRL + CPVDYHRFHFFDSGKCMETRKIKGEYYSVNPVALSKIPELFCRNKREYSIFKTDNFGD + VLFIEVGATSVGSIIQTYIPGERISKGAEKGFFKFGGSTILLIFKKNMVKIDDDIIMQ + TKEGFETKVLAGEAIGNCIDKRTK" + gene complement(3148181..3149161) + /locus_tag="Ccel_2614" + CDS complement(3148181..3149161) + /locus_tag="Ccel_2614" + /inference="protein motif:PFAM:PF04616" + /note="PFAM: glycoside hydrolase family 43; + KEGG: cbe:Cbei_4973 alpha-N-arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 43" + /protein_id="ACL76942.1" + /db_xref="InterPro:IPR006710" + /translation="MEKIVKQKEPLVTHIYTADPSAHVFDAKIYVYPSHDLDEDIESN + DNGDQYMMEDYHVLSMDDLNSPCVDNGEALHMKDIPWVSKQMWAPDAAYKNNTYYLYF + PARDKDDIFRIGVATSSSPTGPFTAQKEPIPGSFSIDPAVLVDDDNRAYIYFGGLWGG + QLEKWQTGSFNPDGEGPAATEPAIGPRVAELSDDMLTFKEAPTEISIVDEEGNPILAG + DEDRRYFEGPWMHKYNGNYYLSYSTGTTHSIVYAVGKDPKGPFVFKGKILTPVVGWTT + HHSIVQFKGKWYLFYHDSSLSGGRDNKRCVKFTELKYNEDGTIQTIDPYK" + gene 3149437..3150285 + /locus_tag="Ccel_2615" + CDS 3149437..3150285 + /locus_tag="Ccel_2615" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; + KEGG: swp:swp_3034 rRNA (guanine-N(1)-)-methyltransferase" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL76943.1" + /db_xref="InterPro:IPR013216" + /translation="MISKTLFQCPNCSKQLKQGQKQYFCPNGHCFDIAKQGYVNLLLS + SHIGTGKPGDSKEMIKSRREFLDKGYYQEFSDALNNMVIETLTAEQSDNFSIFDAGCG + EGYYVSRLKKQISKLVNKKYLDIYGIDVSKSAIQYAAGRDKDIRFAVASSYHVPLLTS + SVDCILCIFAPRDEQEFKRILKPSGKLIVAAPGANHLYSLKEFLYDSPDIIGQKGTVG + EGFTLAEHKNVSYSISVENTEDMYNLFKMTPYSRHADAKAENKLKSSGFFKTEVDINI + RMYQKI" + gene complement(3150416..3151327) + /locus_tag="Ccel_2616" + CDS complement(3150416..3151327) + /locus_tag="Ccel_2616" + /inference="protein motif:PFAM:PF01757" + /note="PFAM: acyltransferase 3; + KEGG: sgo:SGO_2012 transmembrane protein" + /codon_start=1 + /transl_table=11 + /product="acyltransferase 3" + /protein_id="ACL76944.1" + /db_xref="InterPro:IPR002656" + /translation="MEKIHSIDYMRAVAAFLVVCIHIPFYGEIGSIVIAYGKIAVPFF + LVVCGYFCYRTDREEFSKRLKKQIRKIALLTVLANILYLLVDIVLQLIFSSNPIYDIK + QLFTSEKWLDFAIYNQSPFADHLWYLGSLLYALIIILLLCRLKLVNYIMFAAPLLLLC + YILPLRAGGDMIVWRNCIMVSVPYFMFGCIIRRYQAVFLTRLNKLLIPIIITVLIITN + YIEFTIYNSVAPPFISAELLVIAIVLFLLQHPYIGKNTIIEKIGREYSLFIYIFHMSI + VALIFRWYASGKICLSFSYIVLLSWYF" + gene complement(3151305..3152456) + /locus_tag="Ccel_2617" + CDS complement(3151305..3152456) + /locus_tag="Ccel_2617" + /inference="protein motif:PFAM:PF01757" + /note="PFAM: acyltransferase 3; + KEGG: cac:CAC1402 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="acyltransferase 3" + /protein_id="ACL76945.1" + /db_xref="InterPro:IPR000589" + /db_xref="InterPro:IPR002656" + /db_xref="InterPro:IPR016160" + /translation="MISIYVILAVILLFGAKVRIRGWDDGFLSLSNTKIIQGFCAVLI + IIHHISQIITDSQALSPFADYGVLFVGIFFFCSGYGLIKSYKTKYSYLKGFVGRRLPS + VLVPFYVTTLIYMAVFLALNPKPSLLQVFLNLTGIQLINPQAWFIVTMVIFYLAFYFI + FNYLKNEKIAFVSMAIFIIFYTILSLILRHGPWWLQGEWWYNTCFLFYVGMIIARIEK + GLIVKVKKYYVLLLPSVIAALIVMFKVSVYTLDKFSYYAQTAIASGYPESLICFSTQL + PAVILFVSSIFILSMKITFSNMILRFLSKISLELYLIHYLFLLLYKSEIINISNNLLY + VTMVVISSVAAAFLLHIINRTLIGLITPKGKLPGKTAKGGEISGKDTFN" + gene complement(3152665..3153432) + /locus_tag="Ccel_2618" + CDS complement(3152665..3153432) + /locus_tag="Ccel_2618" + /inference="protein motif:PFAM:PF00106" + /note="PFAM: short-chain dehydrogenase/reductase SDR; KR + domain protein; + KEGG: aoe:Clos_0849 short-chain dehydrogenase/reductase + SDR" + /codon_start=1 + /transl_table=11 + /product="short-chain dehydrogenase/reductase SDR" + /protein_id="ACL76946.1" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR013968" + /translation="MAGLFDLTGKIAVVTGASSGLGVQFAMALAKQGADIAIVARRVE + KLEAVKKNIEELGVRCLSVRCDVSDSADITNAVKEIKEHFGTIDILVNNAGIGLTGPA + EEQSDELWQTMMSVNINGVYYFAREVGKIMLEKKYGRIINIGSIHSTVAMPGLPITAY + CTTKGAVEMLTKSLANEWAKHGITVNAIGPAYFPSEMTDDILANEDFHNLIKASCPMG + RAGRDGELDGAIVYFASDASSYTTGQLLTVDGGWTTI" + gene complement(3153774..3154304) + /locus_tag="Ccel_2619" + CDS complement(3153774..3154304) + /locus_tag="Ccel_2619" + /inference="protein motif:TFAM:TIGR00168" + /note="TIGRFAM: translation initiation factor IF-3; + PFAM: initiation factor 3; + KEGG: cth:Cthe_1225 translation initiation factor 3" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor IF-3" + /protein_id="ACL76947.1" + /db_xref="InterPro:IPR001288" + /translation="MEVFFIRKNQVPINEEIRDPEVRLIDADGAMLGVMSSKEAQKMA + ITKNLDLVKIVPNGAPPVCKIMDYGKYLFEQAKKEKEAKKNQKVVSIKEVRLSAKIEE + HDFDVKVKNAYKFLKDGDKVKVSIRFRGREMKYTSDGKEVLEKFANAVSEVGVAERQP + KLEGRSMMIILSPNKK" + gene 3154645..3155794 + /locus_tag="Ccel_2620" + /note="ribosomal slippage" + CDS join(3154645..3154923,3154925..3155794) + /locus_tag="Ccel_2620" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL76948.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSACRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene complement(3155954..3158455) + /locus_tag="Ccel_2621" + CDS complement(3155954..3158455) + /locus_tag="Ccel_2621" + /inference="protein motif:PFAM:PF02927" + /note="PFAM: glycoside hydrolase family 9; cellulosome + protein dockerin type I; glycoside hydrolase family 9 + domain protein Ig domain protein; + KEGG: cth:Cthe_0624 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 9 domain protein Ig + domain protein" + /protein_id="ACL76949.1" + /db_xref="InterPro:IPR001701" + /db_xref="InterPro:IPR002048" + /db_xref="InterPro:IPR002105" + /db_xref="InterPro:IPR004197" + /translation="MKRKKLLALILSVAIVCTSLITSMSVINATAPEGWRNLQDFYVF + KDKVNGWSGSGAGELETENGNLPVDTQVTYENLPSLRFNLSKELTSYWMSVVLVMAEW + ACHDVSQYVANGYLEFNVKGNVGGEQFVIGAVDHVSERASGVEHTIAKPITDYCTVTT + EWQHVKIPLKDILDPSLGMDPYNAKAIVLDKVDLNPFCVWINQLKITSPDKERAYPAI + KVNQVGFGESSEKYAYVSGFEDELKAEAGTQFQVKRVSDDQVVYSDELVLVKDYDAES + GERVFKAVFSDLKQPGEYYITVNEDGIEKSPRFKIGNDIFKPLLTDVARYFYFQRSGT + DLTEEYCPDYPRKDRTPQDTAAIYDSNPSATRDVSQGWFDAGDLGKYVSTGAMAAINI + LWSYEMFPEVYTDNQFTIPESGNGIPDILDETKWQLDWILKMQDTSSGGFYARVQSDD + DGNITKRIIKDKEGDVANIRSTEDTACAAAALAHASIVYEKYDPAFALKCLNAAKSAW + SYLEKNPSNIKSPDGPYSTADDSQSRFLAAATLYRVTGEAKYNDYFLENYSKGKNSYE + NVSGDWVGSWNFAFFSYMKANNRNGDAEKWFKDEFTIWLNNKIDRYKNNTWGNTIANG + NYYWGSNSQILGMCMEALIGSKVLGISNDEINKMTFSSFNWLLGANAMRKSFVSGYGD + DCIKTIFSTFNNDGKSGIPKGFMPGGINRYQGVGLSLFPSKCYLDSADEWSTNEHTTG + WNSILTFVAAFANSNLSGENSIKTGDINGDGDINAIDLAMLKKGILNEETFTGDALKA + ADINGDNEVNAIDFAQLKKLLLTIYNAPQCQDKHF" + gene complement(3158686..3159360) + /locus_tag="Ccel_2622" + CDS complement(3158686..3159360) + /locus_tag="Ccel_2622" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fma:FMG_1597 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76950.1" + /translation="MCSQRTLCKVKIVFLILISIFIFSGCSSQDSENSQFNGRQQKNE + TGVNRSNKKSFEDKLKNAKPFTEDESMKITEEKFKKQLKLLRSEKWNVSENDILKNGN + IERLVSVLNNFKDPELPRYTVLKPKVKDILKNMDKYYGEKINFTGRILKISKNVKEES + IDKMFDGEKFAEVYLGIEDEKVKLYTYRNFGILNQFEEGDKIEFSGWPVGTSENILVL + VNRGIF" + gene complement(3159411..3160088) + /locus_tag="Ccel_2623" + CDS complement(3159411..3160088) + /locus_tag="Ccel_2623" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76951.1" + /translation="MTTYVCILSFFLILLFIIFFIRADIMGKNKLPFLVLVISFFVVL + AVASALNEQSIETKLTEITQKDEEVQTGNRELSSYDKRRNKFEMNIITSSKWNKTIVD + PIESGNIKLTAEVLRKAIIREGMTVKLEGCLAELKTNPLKYIGVPFLVEGDLESYKVL + GKEDQITKIFGTQKVELFFKLSSGNAVVYMNNDKNRVLDGIGEVQGIFAGISKTNDKD + LFVFVGR" + gene complement(3160103..3163245) + /locus_tag="Ccel_2624" + /pseudo + gene 3160327..3160665 + /locus_tag="Ccel_2625" + CDS 3160327..3160665 + /locus_tag="Ccel_2625" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76952.1" + /translation="MDKITDTKTEFRLKQWTQIVQTCQASGMTAVSWCNQNNVNIKSY + YYWLRRIRTLTIENGPLELQSKGQQIVPVSFRQTAAVTIHINSVSIDIPDGTSKDTIA + AVLSALKTIC" + gene 3160659..3161015 + /locus_tag="Ccel_2626" + CDS 3160659..3161015 + /locus_tag="Ccel_2626" + /inference="protein motif:PFAM:PF05717" + /note="PFAM: IS66 Orf2 family protein; + KEGG: cth:Cthe_0516 IS66 Orf2 like" + /codon_start=1 + /transl_table=11 + /product="IS66 Orf2 family protein" + /protein_id="ACL76953.1" + /db_xref="InterPro:IPR008878" + /translation="MLGDISKAEDIYIVCGYSDMRKSIDGFAAIIKGTFGMDPFSPSL + FLFCGKRRDRLKALYWEGDGFVLLYKRLENGSFKWPRTPEQARRLTMQEFRWLMDGLA + IDQPKAIREAKQGDIY" + gene 3161091..3162680 + /locus_tag="Ccel_2627" + CDS 3161091..3162680 + /locus_tag="Ccel_2627" + /inference="protein motif:PFAM:PF03050" + /note="PFAM: transposase IS66; + KEGG: cth:Cthe_0515 transposase IS66" + /codon_start=1 + /transl_table=11 + /product="transposase IS66" + /protein_id="ACL76954.1" + /db_xref="InterPro:IPR004291" + /translation="MQKIDITGLSPNQIEYVSSLEKTVENQQVRIEQLTELLIKSQKA + LYGQSSEKRRYVFDEDSGQLSLFNEAEVEAGNKAEEPTVQTIVAAHTRKPKRTKEELA + ETVPVVEVVCDLDKDKRTCNICNTDLRYLGKEYVRDELEIIPAQVRILRYIRLNYVCK + ECEKETCEANIVKAPVPKPVMKRSLASASTVAYVMYQKYANGMPLYRQEKDWANQGVK + LSRATLANWIIRPSHEWLEPMYDAIKKNLVTEPLIHADETVLQVLKEPGRRATTESRM + WVYTSGQSLTPAVLFEYQPTRSGQHARRFLEGFSGYLQTDGYSGYNAVPNVIHCGCWA + HLQRKFEEAIPNGADNKSSKAAIGYDYCNRLFAMEKKWIELSSENRHQERRKNAKPLL + DEFWQWVSHLNPLQNSNLGKAVTYALNQKETLINFMLDGCIEISNNRAENAIRPYVTG + RKNWLFADTTRGAKASAIVYSMIESAKANQLNPYMYLVYLLSKLPDLKELTQKSLTPY + LPWSPELPCWCHKDSNKAPQD" + gene complement(3163265..3164101) + /locus_tag="Ccel_2628" + CDS complement(3163265..3164101) + /locus_tag="Ccel_2628" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ENSAPMG00000006632." + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76955.1" + /translation="MYQILCNIKSSIRYFLSVKNILLLALVVVFSAYISYSRLQNYIR + LNFTVSASDMLSSIYGIFSAEEKAGINVNLLGRFLIMTLPFTIAIYIVSSYINTYVLQ + HCYFSTIRFKSLLKWFFRHFTVLSVSTILYFFIFNFSLYFISGLITTFESNSMYASSI + LGLTRQSGDMPRLLALFCVLQCSCIIVVVSVQYVLSFLKGSFAGFSTGILLIVISILF + SLFTSNNLYFKNIVLQKSILSNSMDISTFIFTLFINIISVVLVLFIGYKLLSKMDLSI + KK" + gene complement(3164116..3164901) + /locus_tag="Ccel_2629" + CDS complement(3164116..3164901) + /locus_tag="Ccel_2629" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:pE88_37 putative membrane-spanning + permease" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76956.1" + /translation="MFNTNKIVFSQIKLLIRNKLFLIFILAVIGANFILSDAAIRISK + FYKIPIEDVSYWHGVYECLNSNYIVLFIFAVFYLLFTFHIINDFENKFFMLRIRSLKG + WVTNKIILLSLFPFIYTSIYFLIMLIGNIFYFGLPESSDWGSYKVSIFSPIKGIILTY + FVKIFLLFILSLIFTALYILTRNIYKAFVISLGYYSVCYVFNAFIPIKVSKPFTILGG + ISITYFESVSPYLSFLYILGGGIVFIIASSSIIYDNINKFEIK" + gene complement(3164894..3165781) + /locus_tag="Ccel_2630" + CDS complement(3164894..3165781) + /locus_tag="Ccel_2630" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:pE88_35 putative membrane-spanning + permease" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76957.1" + /translation="MQYFLKNLKKYIFNRSTLIVIGIGFFCLIVSFVVRNYDTLKELI + KPNINTMQSQGLDMAAKLRQSKQHRDFLCVDLFNFDSYIRSAQWIYLYLVNIFAILPS + IRYFDKRKSGYLKSVLMRTHFKKYLWREGLSITIAGGIIAFVPYFVYWLLGAIFIPNN + VGEDMGLIQTYFREYQSFNPFSFLHISVEQLKLYWLVYIVMIGIYGICISFLTFVFAN + IVSKKAVLFVAPLGYYYLVTTVMDFFHIQHYSILGLISYFSQANNSTPNILIAISTII + IVSLIIYSVKVTKEKVVNV" + gene complement(3165893..3166276) + /locus_tag="Ccel_2631" + CDS complement(3165893..3166276) + /locus_tag="Ccel_2631" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76958.1" + /translation="MLCGLTILTVGVTAHDVKNFDFYISELNYAETPASVKAHTDAPA + VINTRASDGGYVEYWQNLDTVLHNSAHENRGVARDYASNTRKLINWDGQQQVGYPYHA + LVLIAGYSSSSPSYHAYGTYAADDY" + gene complement(3166552..3171762) + /locus_tag="Ccel_2632" + CDS complement(3166552..3171762) + /locus_tag="Ccel_2632" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_2638 PKD domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76959.1" + /db_xref="InterPro:IPR000601" + /translation="MNIKYTKVILLIFCFVLFIIGFPNIIVHANSNILLRYENGGMEF + FNQSTYDNYKKNNLLPTQFNGSVIPLTIKKGTNTYYLNYRLFTQKNLVVYGSYRSMAG + NYFKCGYQIHNDLDIKNPEIKYDGGYFLKPEGIACKGKEQNPKTHGDKCKTTRGEWKY + LGFDVNGEIFSNMWMINVATVTTFRERNWIKEPWSTTNEVKKVLSGKISTYNESAYNS + LNRYKQQTVQKLKDWIYKTFNSVDRFSGIPDGKGHYDPNVYEYLYIQSAPTIQKSGSG + KMWHVRPDGSIWYQTFSIPNLGQVNKISDSGKRDLPLQCFVTSVSPMPDIPKGNELDK + QKVKLEFQVEGELQDYVILKEDEPAPKDWIPYYKDSVSRTVYYTRQDIESWDLNIDKV + SGIELTDTEKKSKNIVPKSTADNMITATFSIETTIEEIKKLPKQGDNYIVRVEATAKV + NYLDGHNNSKSGSNQFLTGTIPTPPKPKIETLVIDIPTLQIHNRIGEIAFDGVPFRDA + ADNTDMSLIKSTELYINGETVDYDEFFSGSYIFPATSDKNGYFAEVICKYNLDKSKIV + LDGLPKNKKQEIQDAAVVEYVSADYVYVYPTKPIAQFKLSSNSWKQNRIINVDNNSTD + GNIQLVLDRYPIVEYKWSYGGDTSQLYKGTNTDLKKQLQYKEPGSYSVTLECKNTLGK + WSDPYVVEFRVLEDIAPNIELNLSDSVVTRNDQISAWHYDVNSTDGDKVTAAKIELWY + DSDNNGNVDSLIKSWNGLGDNGICELTDFPEYTPTQLGYYKFFIYAQDEFVGVNGQDT + LSQYVNDSDKKSAYLECDFWVDNYQPLSDIYIDAPIERPNIDLYIMRDKDLAQNKYEY + IASYRVSMENALLGRNIIPNVNIWDMKTYEYSTPASISSNTGTSYPAEEIQYTSAGYS + GKLRRTSITDNGGYYDFGQYEFRTETKTASAGGQSTSGHGYSGSYPPSSVSYSDGDGY + SGTLSGYGYVYTSTARSDKAGDFDWTRSYAGYSGTVSKTITYWVPNMQWVANYTGYYS + GTIYKYVRQPYTDTWRGNSSKYILYVSGGKISELSEINLIVAKTDAKVILVGTPDIQK + QYPDCVKFIDATDKTVQEILNEVLEYISNETPEVEQVFILQNQQFTLNVGEDDLEKDE + IVSREMQYIQDKDHFDNPTGQEPGTQTVFNSGKGWTSDIKNSFSNVGKYRIYRRVKDR + PTGAYGENYSYYSGTTEVDVYVHRKPIAKAKLDWDFNGATNTYKTTWKDFSYDLDHNI + TRAKTDKGISNRKIMWKKEGGEWNYTIPDNLSPGTYRIRYYVKDIENTWSDVFTMDIN + GTTYTDVPEVIFTLSDTPPMQFEAQLRAMKTTFRAPPSPVTLPASEDLEAFDLWTRYP + LNPYLTMALYSQNGTQVSGAKTVSYSTATGSKNGNDISWNNVPYNVPHTLKDGNYIFK + ITANAEQSKTITFPVTVKTPINLKGYINGRETAAQINTGDTNLFKFTTSQYVSKTQLT + FEGRTYTSNSGNIKLISNSGSVKTWELRLDISDGAYPDGKLGSAEFKAWLPSGMSETD + NVDYKIVGIRAYSFAVTMMLDPGWRSYYFDTSKGVDDNRDGKIDRYPRKSNTDIPTIK + MPINYYSLVGHSRTYIKAGYKVKGRIDIQGEPDYAAFKIHYIIKGKTHTDAVKLTRIS + GDTYTFEWIIPLETDDKTFVSFDLVTKKGASTYGSEKWIDTWDSRNTLRQVFYIRGKA + TDDLIYTQSQ" + gene complement(3171779..3173206) + /locus_tag="Ccel_2633" + CDS complement(3171779..3173206) + /locus_tag="Ccel_2633" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: amt:Amet_3262 NLP/P60 protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL76960.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR005829" + /translation="MIKKLLCIITVLAFLLTALLPVMAENSSTTTEMRMQPLVDKYNT + LTQSNLDTELAKYTDIKSHWGRNFIAKISALEIISGFPDGSFRPNDKLLGGQYILMLV + RAIGYRPEVPQGVPYYKPFVDIALNEGILKKGEISDYTKPISRELAASLARRTIGKYE + TIPKDYFVKGSDPYPSKGNKGFFDNVYVGYQKLKMTDYPTVTGKYLQDVIDCYRIGLL + TGSNNKFNPKGTLTRAEVSVIIIKLLDKNARVESVPSASESFKWKNSNANNGEYDNEA + AGFYENKEYTLYKGLFPMMEIWETAQTMYKNRNLITGGKIDFTYAEKDKSFAINYFNS + KDHFDKYMNDIYGLILPLNGIGIATQRSQIKKGQKESLYDNSNGWLYEISSYEVDKYN + KHLKNYSYELIKLWFGKDYEQAKKIHDKYLNYSLNDMSWRHGVYFLNGRQIYVIGGRS + EGGISFGFQVWAKDYITKNTMLRLN" + gene complement(3173773..3174609) + /locus_tag="Ccel_2634" + CDS complement(3173773..3174609) + /locus_tag="Ccel_2634" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_1095 signal peptidase I" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76961.1" + /translation="MKYNCDLIKDLLLLYQDKATSDFSSNVVEDHLNKCNECYRFYHE + VKKATEIHFKTPPKTDNVGGYQSLAKRLNRAKWYWRLCIGLLLGCIISLSLMYADGNR + FDPMSAAHAGNVLDENSRLLAAVPMGKERILYIYDDDGLYRDINVVYHFPFWKYNYKW + PNRYIADRNLGVQLITKGSYANSINKSLYIIFAVAVNDGRVAYIELGKEGKLQRQNVD + SPITVFFWDETGNWDGTSTWNGMIKDSELRGTAYASDGTVLYNLTHESNEQNPIKWIP + VD" + gene complement(3174599..3175111) + /locus_tag="Ccel_2635" + CDS complement(3174599..3175111) + /locus_tag="Ccel_2635" + /inference="protein motif:TFAM:TIGR02937" + /note="TIGRFAM: RNA polymerase sigma factor, sigma-70 + family; + PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 + type 2; + KEGG: cpy:Cphy_1094 ECF subfamily RNA polymerase sigma-24 + factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL76962.1" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014284" + /translation="MSQFENLYDEYWQDVFRFLFRLTGYQRQLAEELVQETFYQAMLS + FHRYRGECQIRTWLCQIAKNIYFNVIRKYKKVRQVSIEEYASHATLSFDTVVADYETQ + ELIDHAIKVIMQLDDKTRDVLIYRIFSELTYAQISTLLKINESSAKVIFMRGKYKLQN + KLREEYGYEI" + gene complement(3175300..3176760) + /locus_tag="Ccel_2636" + CDS complement(3175300..3176760) + /locus_tag="Ccel_2636" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL76963.1" + /db_xref="InterPro:IPR004089" + /translation="MNISKETVKHFRKVNKAVIAVVWVIIALLLILEFTGMSDLSYII + AFLGIVTTIVTVFTFKKIFERVTTVMLLSSIIISNIVLSLTNHGSSQDITIIIILCLT + TLYLDKRVLLIVGALMESANLIIRISQDNLNTNFLISDFAIPGIVLLILFFVTHWGNE + LTISASIKEVRTNELLVQLENTMDIIKKSTFSLNGDIDNCNNSLEIVHEISNSMAASI + AQIAEDVVNQTESVTNISEMMNSAGEKISDINNFSKQMANVASNANQVVVDGCDKINR + MDSQMEIINQAVKKSYSTVQELNSNMDEVNNFLSSITQIAEQTNLLALNAAIEAARAG + ESGKGFAVVADEIKKLAQQSSNTVKEIDQIITEIKAKTQDVLNDVNNGNIATKEGEKI + VGQVNESFERIQVSFKDIDKYISNELSRMENVTSLFSQIHDETDRIASISVGHSAATE + ELMATTQENNTNIGNIYNLMHDIKNASDNLHSIVKQ" + gene complement(3176898..3176996) + /locus_tag="Ccel_2637" + /pseudo + gene complement(3177098..3177919) + /locus_tag="Ccel_2638" + CDS complement(3177098..3177919) + /locus_tag="Ccel_2638" + /inference="protein motif:PFAM:PF06445" + /note="PFAM: regulatory protein MerR; transcription + activator effector binding; + KEGG: cbb:CLD_2330 MerR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MerR family" + /protein_id="ACL76964.1" + /db_xref="InterPro:IPR000551" + /db_xref="InterPro:IPR010499" + /translation="MLRIGDFSKLSRISIRMLRHYGELGLLVPQSTDCYTNYRYYSEE + QLLIAARITALKEMGFSLATILEILKNYDNPKALSEFLTIKRAEVQAQAEEISQRLLL + LETTITRLRKDDTAMNYNVVLKTLPERYVASVRKIIPAYDQESILWNLLMVETETMNL + QPAENCYSLAIFHDEGYKENDVDVEIQGTVKGTYPNTEHVVFKTVPEVEIASATYKGS + YEQLTAVNQAVANWVNDNSYEFNGAMFCIYHVSPAQTQNPNELVTEVCYPVKKKK" + gene complement(3177990..3178350) + /locus_tag="Ccel_2639" + /pseudo + gene complement(3178447..3178746) + /locus_tag="Ccel_2640" + /pseudo + gene 3179549..3180820 + /locus_tag="Ccel_2641" + CDS 3179549..3180820 + /locus_tag="Ccel_2641" + /inference="similar to AA sequence:KEGG:DSY1956" + /note="KEGG: dsy:DSY1956 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL76965.1" + /translation="MVETVIEFSRYWFSLLFGATVAVSFAGMARTRKNHLAFGCFIVV + VFIMQIASLRLWGMAITIKLYPLLSHLPVAIFIVVFLRRPWLISVTSMFASFLCCQPP + RWIGSVAGAAFDKASINHASYVVAVFLMYYFLQKYVVESVQHLMERSIKSCLLFCAMP + AFYYLFDYASTVYTGIMYSGSRAAVQFMPFMMSALYFMFILLYYAEMQKQANIQRERD + ILDTQFRQAKTEFASLRKMQQNAAAYRHDMRHHFALLQGLASNGCLKEMKEYLRTAQS + DMDAITPKRFCENETVNLILSSFDATAKQSSILLTVDASFPDLLTFSDTEICSLLSNA + LENAIHACENITDSNKRYIKLRIFSKNNKLCIDIRNTYQAEPIFHKGLPVSKEQGRGF + GTKSMIHIVEKHGGICQFSVEDGWFIFQATS" + gene 3181005..3183674 + /locus_tag="Ccel_2642" + CDS 3181005..3183674 + /locus_tag="Ccel_2642" + /inference="protein motif:SMART:SM00635" + /note="SMART: Ig domain protein group 2 domain protein; + KEGG: dsy:DSY1958 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Ig domain protein group 2 domain protein" + /protein_id="ACL76966.1" + /db_xref="InterPro:IPR003343" + /translation="MKKRLLSMLLVLCMVLPLLPLPANAVNKSIVYPRTKLKDVYVNG + YSYQYSPSGNWVIGKNNIMFTDKNGNIGLFSYKDGNKPRAYIFDKDYKVISDTVINLP + SHEYFGTFSVAADGNYYVVVGHRNKEENAGKTVVSLLKVSSKTGDVIKKGELKAKQFG + SAHSSITVPFNAGTAELLEGNGKIYIHMSHEMFRAKDGKNHQAANLFVFDGGSLKPIQ + VKNDFYVSHSFNQMLKADGSTIVTLSHGDAYPRAIRLATMDSKGNFNKSDIFSFKGAS + GKNETGSTVSGLEIGQSTYLVAGTSVTHNQPVNGKYSPNGEWYKGRNVYLSVVNKKSM + SPKHIWLTTFDPSNKDINITDPRIFKSGKQFVVVYSVSQGDNTYTEFVTVDENGKILA + RNKKDKTAFYTNSYPLQKGNKIIWIAPWVAGMDFYYLNNTKIYKYKFDDTGHVYLFEV + DISSPSSPKWVEGIRPQSVVIEQKNVFMNRGDATKLTAKVYPANSPFDEIIWSSGNSG + KYSVTKDGYVTALEGGAINKIFAQSEIDQSIYTTVQITTNAAPKAPNPQVRKSSTATP + KNKQVGLYSTLEYYPLEKGKQTTNVQLKSSSGKVPEYYITSSNESIVKIKDSTKLVGV + EYGTATVYFHTADKKNVASCVVEVTPPKADGTYIIKMPKTNYKLGEPFETEGFSAVKC + TNNGKEIRYYDDKQVFFIITDQLSTYTTDAWGRGKPLTKAGKIEVRVNIAGTVLRYNI + NVSNSSIGADNSNYTKVLKDGRYSLRCMYNYVNIASNGGAELKNVNPAPSYEFKRQTD + GNYTIKSEYGKYLGISDPIKDGIQLKEVDSPYMWTLYSENNNDIFSLRPASNLKMVVN + AAGQKNTDGTWIILWTHEDTNAPNNAEFRFIPA" + gene complement(3183812..3185200) + /locus_tag="Ccel_2643" + CDS complement(3183812..3185200) + /locus_tag="Ccel_2643" + /inference="protein motif:PFAM:PF00082" + /note="PFAM: peptidase S8 and S53 subtilisin kexin + sedolisin; S-layer domain protein; + KEGG: gme:Gmet_0749 peptidase S8 and S53, subtilisin, + kexin, sedolisin" + /codon_start=1 + /transl_table=11 + /product="peptidase S8 and S53 subtilisin kexin sedolisin" + /protein_id="ACL76967.1" + /db_xref="InterPro:IPR000209" + /db_xref="InterPro:IPR001119" + /translation="MKLRIFFAVVLAAMLLTVSALAAEAEAIRVAVIDTGISETAIPK + TNLSSGRNYILPNKTTTDTVGHGTAIASIIVGSETAGIKGICPEAMLVPLVYYAKNED + GGTIKGDGVMLAKIIRDAVEVFDCKILNISSGVLTDTPALRDAVAWAEKQGALVISSV + GNDGNDTVYYPGAYSSSLCVGAVNDANSAPADFSNRNEAVDLLAPGEKLPTATMKGNR + LLASGTSFSTAYISGVAAKLMKEYPDLTAAQIRQILYASATDFGTTGYDRVSGWGILN + LEQALDYARQGCLFRDVDSSKWYFEGVRKAAKLGLFQGTSAVEFSPNQPTTRAMLWMM + LYRLHGLKPSESTTIWYRDARLWVTANGISDGTNPNCTITREQMAVMLYGYASVFDYD + IGKRADLSKFTDSDSISSYAKDALSWANASGLISGTGTQTLSPQGSATRAQVAVTVIK + FYDLVFGGVRGT" + gene complement(3185260..3191796) + /locus_tag="Ccel_2644" + CDS complement(3185260..3191796) + /locus_tag="Ccel_2644" + /inference="protein motif:TFAM:TIGR02543" + /note="TIGRFAM: cell wall/surface repeat protein; + PFAM: S-layer domain protein; Listeria/Bacterioides repeat + protein; + KEGG: lin:lin2724 internalin-like protein" + /codon_start=1 + /transl_table=11 + /product="cell wall/surface repeat protein" + /protein_id="ACL76968.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR013378" + /translation="MKKRLVSLFLCLCVLITTFPAASAYAVQGDSLNTTVQTTYEKTD + NPYTDVKKTDWFYSAVQYARDKGFFSGTSTTTFEPNVTMTRGMFVSVLGRMAGVDTAN + YKGKSAFSDVAADAYYAPFVAWAAKHGITSGVGDGKFAPNKLINRQQMAVFFVRYFET + FGVDYETGAKITTTPEDMDNVAEYAKDAVLKLWKTGLLAGDGVNFNPLGEASRAQAAM + LCMRTDETVETWYKEPGIPKEERPVVIPPSGESSSGGSPSGGSPSGGSSTVYYGVTLK + AGEESTSKLYPVGTLLNTMPVPVQEGGTVFLGWYYDSALSNMVASTDTLSRNLTLYAK + FTEAVSLSENGELNFVTKQDAAANFTVTINSGSMPAYGKDFKFRNITDPSVTDGTDGV + EQETVSVTGSAGSFTVASDIGGFTPGHTYQIELLNDAITFAGESKEIRYYNFIIQKDE + VLNLELSDGIKYIAASALTESDRNNVLEYAGLYQTVTDAQGVTTYTANSGIGSFTYSG + GGIMVGDTIAVYTGKKPDKRSVEDSGAVAYLEITRIDGTTCYYQSAKSEDVLFTPDLL + PIDLDAGDGVTAGNTVATNGTGSITISTSKLDFSADTHADMGLGAETVVEPGDFLSFF + NNGDLGDTNASKQGYGEIISITTNGSSTIITYSVVSEEFVLSTMELYSESELTDAQIE + AAYDEQLIRESVESQIMSSSFIQDAGEYLAGLAIQTDEVKEIFGSQDNLTLTDYIITY + SNGTPVSEDDLALMGNIVNKEGGIKTSVSVSPRLSHFEGRKGIRAEVAVTYNFDIKKS + GSNKKVEVELTAFFEQEVLFGFSVSGGAVWKKKWIFPYIADYRMTGNIDLGTYTGVGV + TATAKLAEDKEPWGMPWPKSAKEAQANKKIFSLSESIKKKMEDVKTVFPEAEASSSGG + LAEKYAAFMEDANDAWVDLFVVKLIDLRGGVDPLHILAYGIQVDFVVSANLNVAIGMT + FQYENSKRHSFALSLKSKKADSETIDLSTNGYQFDFYVMGTLGIRAGIRAKALVGLFS + TKLDGIGLQIEAGAYARLWGYFYYSLTNYKTGGVWEKTSSSSGAMLVEIGAYLDVKFV + AEVLNGKYSYAPTIYAKEWPLWSAGQRENIYDFAYVKAPTYAIQNVTTYTLPTTVFEM + KWMDLKTGDLGEDDKPKTKNFDENTVHNTKDEKYFAVELSNPAFTYNPVNNQITVSRA + SGDSELNCEMKLTWKGAPLAFSTETVSRIITLKWSDLLNGKAMVFESNGGSTVNMICK + LAGANISALRPANPTKAGYTFAGWYNNRECTGAEYTFPNTMPNENVTLYAKWTPNVVS + YTVEHYQKGLDGMYVLAESQTMSGISNQATVAQAKSYTGFTPKTIQQETILADGNTVV + QVYYERNSFNVTFKYGAEAGNRSVEIKYPMGAKIEWINPAAPGYTFLRWDNTVPKVMP + ANDLTFTAVWGAWANTKYTVEHYQENIDDNGYTLAEREVHEGQTGTGVTPDVKTYEGF + TAPAAQSVTVKGDGSAALKYYYTRNNYTFTYVLGNGEDDAVLPIKYGDWVLQRYDPTR + EGYTFGGWIENGEAASIPTTMPARDVTLSAKWNVNEYTITFDSNGGSSVLPITKEYGT + AITEPTAPTRAGYNFAGWKLNGDDYTFSTMPGKNITLTADWTADSNIAYTVEHYKSEL + DGSYPSTPTETENMKGGTGATVTATAKSYTGFTYAPNVSGTVSSGTVKADGSLVLKAY + YTRNSYTVTWNGNGGTVDTSGATTGSVKYGATIIKPANNPTKAGYTFNLWSGYTANMT + MPAEDTTFTADWTVNQYTITFDSDGGSAVTAITQDYGTTVAAPTVPTKENYSFVGWQL + NGKNYAFTTMPAENITLVAVWSDTPTYTVSFDANGGTVGTASKSVLAGSTYGDLPAPA + YDGHYFLGWFTSTSGGMKVTSATNVELSADQTLYARWATTGYTGNVQLVLYVAGIKVA + TENMNDIHGDGSASVQFDPSTGTLYLNNATIAGTYSSSYVNAAIYSEGNLTIENTGTS + TVTNTYNEPAGTVASVCGIYTHSGLVIQGTGTLTTTSGTGGTSYNYGIRAGLAGNYFT + INGPTVKAFAGIAGSGGKSYGVSIGPINLTYTVKLRKGTLETHGYDSAAYCGPLDSTV + KYFVENGSYQKIDTITVSESYDGTSATSVIQDETYRNYKYITVTNP" + gene complement(3191910..3192248) + /locus_tag="Ccel_2645" + CDS complement(3191910..3192248) + /locus_tag="Ccel_2645" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76969.1" + /translation="MPTFIAFFVAGICATGFVTIWFTTAYAELSAKRNCLADLDKQLR + FHEGLYARARDGPDVESANGMLETSRMLCREASKSYNRILHKPMNLIPALLMGFRAVD + EQNKQDKKRG" + gene 3192410..3193168 + /locus_tag="Ccel_2646" + CDS 3192410..3193168 + /locus_tag="Ccel_2646" + /inference="protein motif:PFAM:PF04397" + /note="PFAM: response regulator receiver; LytTr + DNA-binding region; + KEGG: dsy:DSY1957 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, LytTR + family" + /protein_id="ACL76970.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR007492" + /translation="MEHLRIAICDDDSRDLLQIVSLLESYRHENKAELTYASFQNAIE + LLVSMENGDYDVLLLDVLMPGMSGMQAAREIREHNSRIQIVFLTSSPEYAVESYSVRA + HHYLLKPVSEEKLFPILNKLLDDFKKPEDALCIKTQSSVFSLPYGKIEYIEVSAKKLY + FYLTDGGIREVTGRLADFEQGLLKRPSFIKVHRSYLVNLQWVQELRQGELVTASERRV + PVSRAAYPQVRTAYTQFLFYEAEELVQDGIGGVE" + gene 3193165..3194445 + /locus_tag="Ccel_2647" + CDS 3193165..3194445 + /locus_tag="Ccel_2647" + /inference="similar to AA sequence:KEGG:DSY1956" + /note="KEGG: dsy:DSY1956 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL76971.1" + /translation="MITTYIGVIQFGFSLLFGVALSVCYAGIERTRKNNLAVVYSCVL + LLFVQSSCWWLFGIDLTSKLYPLIIHLPLILLLTMYLKRPWAISIVSVLSAYLCCQVP + RWIGIFGGAVFRSSLVEHICYIAAVFLAYYLFQRYVAGTLRQLMETSTKYCVMLGAVP + LFYYLFDYITTIYTDWLYRGIDGAVQFMPSLFSIVYFAFIILYHVKMQKQVHAQRERD + MLAAQLHGAHSELVSLRQMQNVAAAYRHDMHHHFAILQGMTSEGSIEKIKTYLNIAQS + DIDAITPIRFCENETVNLILSTFFTKAKHVGITMTVDAKLPSSIPLSDTELCSLLSNG + LENAIFAVARLTSEHKVISFKAMVHKANLLILIENPYAGVIVMKGGLPQSSLEGHGYG + THNISAIADAHGGQAIFSSENGVFSLKIMLPLRK" + gene complement(3194597..3195025) + /locus_tag="Ccel_2648" + CDS complement(3194597..3195025) + /locus_tag="Ccel_2648" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tde:TDE1306 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76972.1" + /translation="MKETIRKNIVDLPYSLHDARVNKIQIEEQNIVLHFSEGYFKPMD + NYCLPVKENAVININGVDLDFCNAYLITAMDSCGKFTGEKYGLEEFVSNFPDINFEIV + DETYGYNQSKFSGNLYNNKEIKECIIEIYHFGDMKYIVDD" + gene complement(3195006..3195896) + /locus_tag="Ccel_2649" + CDS complement(3195006..3195896) + /locus_tag="Ccel_2649" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76973.1" + /translation="MGSKTIRKKQIIITNILAIFVASTLAILSKVMLPSAVNVEDFNS + IFVKVLGFQIVASLYFIMIYTHSAVVTQLFGKNAKLSNIQIGMRFGICFGLIFLLGMQ + EVVVSASPFSKWGLGFVRYQFFMGIGEAVVAFALCTIISMLTIENKKSECLREDTRYN + RVLTVALIALTFTAERVIAYKTGIISSDIETFPVPSYGWTILFGIILGCCYEILYPIF + SEDKNPVSQSFKLVVAAIGLSWIIFNSFIGWILDGAMAEVLIRSGLDVTIFFITALGI + RKHAIKNINIKRGCHEGNNP" + gene 3196300..3197220 + /locus_tag="Ccel_2650" + CDS 3196300..3197220 + /locus_tag="Ccel_2650" + /inference="protein motif:PFAM:PF01841" + /note="PFAM: transglutaminase domain protein; + KEGG: ppr:PBPRA1946 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transglutaminase domain protein" + /protein_id="ACL76974.1" + /db_xref="InterPro:IPR002931" + /translation="MKDSQQYYKEPGLFTNISSHNYVIENIANNPEYICQIVQGLIVH + GAWTKLYGIPSDSEKESYPLYLSDLLTKILNLDTRSILIPRLPEDRVIASCREFATLA + CAILRAKGIPARCRCGFAVYLGYQGSLEDHWVVEYWNGCKWIMNDPQIDPFQLSMLYK + WELNKVTLKNEKIINSDFPNPHNISLESDFIVAGKAWQLCRNGLFDPMKCGIEDLWGL + WFVRGQLLRDFAALNKIETTPHLCRPDLDWDTWRLLTANDSELDEADFLLLDKIASLS + LDADNNLGTIIETYECNVSLQVPKRILESR" + gene complement(3197447..3197986) + /locus_tag="Ccel_2651" + CDS complement(3197447..3197986) + /locus_tag="Ccel_2651" + /inference="similar to AA sequence:KEGG:Cphy_3139" + /note="KEGG: cpy:Cphy_3139 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76975.1" + /translation="MYLYHYYDKNDGAFKNLSDLTVEDAKEILSKIKCERPNAQASAR + HENYIETRMGYEDMARRLFAEKGGKILRKAPHYMVVEACPWLYSWFENPAYIKIPINE + FDLSTLSFTYGDMHPTFSPRVNDGKEYRKQLYLYKDILKLIDKYGLPQEWNAHGRYGP + ERYIEVQVWSDETISRFVK" + gene complement(3198102..3198431) + /locus_tag="Ccel_2652" + CDS complement(3198102..3198431) + /locus_tag="Ccel_2652" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76976.1" + /translation="MRYKLNMLEPAIRILRVIFVLSVVSAILYVFKQRELALVFTGVM + LFLIVLILIGVAVELKQDNYLVNRHYKLRNEAKILSDSYECEYCGARFKMKLSFCPIC + GKSLKTS" + gene complement(3198416..3199768) + /locus_tag="Ccel_2653" + CDS complement(3198416..3199768) + /locus_tag="Ccel_2653" + /inference="protein motif:PFAM:PF01425" + /note="PFAM: Amidase; + KEGG: ana:all7525 amidase" + /codon_start=1 + /transl_table=11 + /product="Amidase" + /protein_id="ACL76977.1" + /db_xref="InterPro:IPR000120" + /translation="MESKMIRQIENVKDRKITVLEIVKERLTLLERHKSINAVICYDE + KTVLEQAIELDSNIKAGKSIGKLCGAVITVKDNLEVKGLRATAGMKKFQNNIPSKDCV + VVKKLRDEGAIILGKTNMPAGAMDMQTFNEIYGRTDHPDFPEYTCGGSSGGGAAAIKL + GLCDADIGNDFMGSIRVPAHFCGIYGMVGTDKVIPLENMVGGKPYGSTMSNILRIGIQ + AANLSDLHLLFTIIADDSKIFPSTRNSGQLKIAYSKDCGELPISKEYVACFTDFIKGL + SAKYYVNEIHQAEFNFQKSRECFLKLLYGNMSLSLPKIVRLMMGSKMSDKLKDYLNAE + EKREECIVQLDQMLAEYDILLTPVTATASFQHKCPVRILGHQAIYDDIPVDDTKVSYS + VANMGYTTPFSLTGNPVIVIPIGRTAKGLPLGIQVVGRRMYEHDLLKCTGIIAQCDIN + " + gene complement(3199819..3200712) + /locus_tag="Ccel_2654" + CDS complement(3199819..3200712) + /locus_tag="Ccel_2654" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: vvy:VVA1253 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL76978.1" + /db_xref="InterPro:IPR000005" + /translation="MIMNSIFYQKKIEQALEYAEYNIGSDLSLQTISKIAGFSPYHFH + RIFHSVTGKSLHQYILERRLNNCASKLLYEDCDITRIALDFGFSSSSSFARSFKKHFG + CTPTQYKKTKDRKYPVPFSEIVLQQISFDPELEKHFNEIVLADLRTICIGVTGLSEVW + ENPEINRAYEQIFTWLKENKKFTSDTKICGITMDTPEVQNLSSCRYYACATAESYIHD + EHLAYRVFQTSGNYICCKINRCIKDFAACFFKHMDYLYGFYMVSHKFSPDNRPFVEFY + ERMPDGDIYIHFCVPVKNSKK" + gene complement(3200925..3202877) + /locus_tag="Ccel_2655" + CDS complement(3200925..3202877) + /locus_tag="Ccel_2655" + /inference="similar to AA sequence:KEGG:CPF_1493" + /note="KEGG: cpf:CPF_1493 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76979.1" + /translation="MKNDKNSSVNYKRNLQFMIKQLFELRKGPTPWGKAFCAGLCAGL + PVLIGILMGNFELGLLGGIGGFTYLYVFNETYVSRMKKIFLVAVTISFLVGLGTIVAP + YHWLVILIIGLIGFMATFIFGVLKVPGPAAIFFILSFTITTSMPINPSQAPLRFLVVL + ASGLFAWALSMVGWVKNPHKSEIKAVEDVYLSLGGFCGAIGSEDMNNKRQMVIEALRR + GEETLSSGYVSKKNKMEFNRLVLLNQYADDLFIELIEVSFYSSSKVPQEITDRIRELY + KNIRLKDGEVDKIDLKRLSKESAGEYTKLLDSIYDIEKLMNMHLDGIESEVSKAVRPS + RRMKLIKALDMDFIVFVNSVRYGVVLSISAIVAFCFPFTRPYWIPLSCAAVMFGTTIM + STFNRAVLRCFGTIVGVLIATCILSLHPAGIIVAIINMILTMITELVVVRNYALVAMF + ITPNALILAEAATKNSNPSQFITGRVTDIIVGSMIGLIGTYIIGRKSASSRLPGLITK + LIRSQSRAIVRLEANKKNNNIQDIQWIKEKMEINLGNLKLAYNTALGEIPRNQEKLEF + MWPAIASLEHISYLIGKNIEGREYIRLSDQELAQILMVLEKIATAVEQKHVLKDIRTL + DIDDIPKICKEVNNLQEILSMKNMFI" + gene complement(3202909..3203082) + /locus_tag="Ccel_2656" + /pseudo + gene complement(3203415..3204503) + /locus_tag="Ccel_2657" + CDS complement(3203415..3204503) + /locus_tag="Ccel_2657" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cbl:CLK_3452 sensory transduction histidine kinase" + /codon_start=1 + /transl_table=11 + /product="histidine kinase" + /protein_id="ACL76980.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /db_xref="InterPro:IPR008358" + /translation="MRAKLNSIRIKLILTYLLSAVLAGVCVFFVFMTVCIAFYYNYED + FLNWVNANVVVFLLAVMLVFIMLMSAFFLLLTKKSIKFIEKITQLVEQISEGNLGIQI + FDERTDELGNLSKAVNKMSSELERLIAEEKRWEKSKDEMINNISHDLRTPLTSIIGYL + QMIIECKQNDNEDYMMQYAHVAYSKCEQLKLLVDQLFEFTNVSSKEYKLDITKIDVAE + LVRQVVAGLMPILQEKNICCRIDFPDEKVYTSADGTLIARVFDNLISNAVKYSPNGGN + IDVMLRKEPFGAFVRVTNYGITIPEQNLPYIFDRFYRVDKSRSNSCAGVGLGLAIVKS + IVEKHKGEIHVKSNDNKTVFEVRLNTNT" + gene complement(3204493..3205197) + /locus_tag="Ccel_2658" + CDS complement(3204493..3205197) + /locus_tag="Ccel_2658" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cbk:CLL_A1387 regulatory protein VanR" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL76981.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MEKYNILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILA + KQKIHLLILDIMLPGEDGLQICRKIRESYIIPIIMVSAKSCDMDKIMGLGTGADDYLA + KPFNPMELMARVKSQLRRSFYMNTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVD + LTPTEYEILLLLAGSPGKVFSVEKIFESVWKQKFYESNNTVMVHIWRMREKLESNPKE + PKIIKTIWGVGYKIEG" + gene complement(3205310..3207298) + /locus_tag="Ccel_2659" + CDS complement(3205310..3207298) + /locus_tag="Ccel_2659" + /inference="protein motif:PFAM:PF00144" + /note="PFAM: beta-lactamase; + KEGG: cbl:CLK_3450 putative beta-lactamase" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase" + /protein_id="ACL76982.1" + /db_xref="InterPro:IPR001466" + /translation="MQINKTKKQKRILSVMLLSAFICICWSNTLAAQSANPSKQISNV + SSTTSSDGPNDPKELEKFCDDFFKKYMEKDSVPGAIISVVKNGQILLKKGYGYADLKN + KVPINPDKTAFYICSIGKLFTGTAVIQLYEKGKIKDLNDNVNMYLKKIKVNNKFTNPV + TFSNLLTHTSGLDEGSVIGGASKTKDEILSYEDYLKMKLGSVLREPGSFTRYSNLGYN + LLGYLVEGISEMPFRDYIKTNILEPLGMTNSTAGEIPDNLAIPYIFDGTTMQPSTSEI + NLPGLGEGCIYSTADDMAKFMIAHLQNGRYKEKSILKAETSKLMHTQQFTNNPVLPGM + CYTFMQSYDNNQKAIKHEGGDASGYISTLYLLPEYNIGFFVEVNTLSTLPITFESEFL + DHYFPRETGKVQYFAGYKQRNSDYTGIYRSYDDISVTTLLKVMALFSNDGEMKILNSK + EGALFMHSTSFEGNPIATKLIQTGDLILKRQDDNSDIVFQKDKQGNTAYAFNNEPQKT + FEKIHWYETRDFNFITLTACMLIFIFNIIGITFSFFRRKNKKKESSLTKLELASNATL + WSVCMLNVISMIAFVLLLMTATYEIQYGLPLVGYISISGLLLGAVLSIGIIVFCVLLW + VKRQKTLSSRIIYTISAISCSVFIWFLNYWNLLGFKLQ" + gene complement(3207511..3208263) + /locus_tag="Ccel_2660" + CDS complement(3207511..3208263) + /locus_tag="Ccel_2660" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: dsy:DSY1761 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL76983.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MIKIHGVKKAYSDEVKIGPLNIKIPKAGLTSLIGPNGAGKSTTL + LMIGRLLDMDEGQIQVANMDVSMSKSEDLAKILTILRQENHFITKLTVRQLVGFGRFP + HSKGRLTKRDEEVISKYIDFLGLSDLENRYLDELSGGQRQRAYVAMVLCQETEYVLLD + EPLNNLDVARSVQMMEHLRHAADKFGRTILTVMHDINFSAKYSDRICAMKDGQIAAFG + TVKEIMNSEILTDIFETKIEIIDGPHGPVAIY" + gene complement(3208260..3209318) + /locus_tag="Ccel_2661" + CDS complement(3208260..3209318) + /locus_tag="Ccel_2661" + /inference="protein motif:PFAM:PF01032" + /note="PFAM: transport system permease protein; + KEGG: dsy:DSY1762 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transport system permease protein" + /protein_id="ACL76984.1" + /db_xref="InterPro:IPR000522" + /translation="MTELVISNKNKLGNSSRSKNRSARAFRSNKEEKRYWILLITLIS + LGVLSSYGLLVYNNPVPIDSPSFIPVVRRRMVALVAMIISAFCQSLSTVAFQSITNNR + VITPSLLGFEALYSTIQTSTIFLFGASALISFSSVGSFLFQVVAMMLMCLVLFGWLLS + GKYGNLQLMLLVGVIIGTGLKSLSSFMRRLIAPSEFDILQARLFGSVNNADSEYFPIA + IPIVIIAAILLIAHSKKLNVVSLGKDASTSLGVNHQFNVIYTLVLVSVLMSISTALVG + PLTFYGFLVATLSYQAAQTYDHRYIFPMALVIGFLILAGAYFFMNHVFNAQGVVSIII + EMFGGITFLLVILRKGTL" + gene complement(3209315..3210325) + /locus_tag="Ccel_2662" + CDS complement(3209315..3210325) + /locus_tag="Ccel_2662" + /inference="protein motif:PFAM:PF01032" + /note="PFAM: transport system permease protein; + KEGG: dsy:DSY1763 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transport system permease protein" + /protein_id="ACL76985.1" + /db_xref="InterPro:IPR000522" + /translation="MKHKIKKITGAENYQLQSYNHHKLWTKSFILAIIVVIILGGISL + FTGVYDIRGQQDGMNMFFITRVPRTAALMLTGAAMSMSGLVMQLVTQNRLVEPTTTGT + IEWAGLGLTFVYLLFPAPTLVQRMTGAIIFSFLGTMIFFIFLKRIKLRSSIVVPIIGM + MLGAVISAVSTFVGLLFQMTQSIESWFVGSFASVQIGRYEYLWLIVVVTFFIFIYADR + LTLAGLGEDVTTSLGLNYNRIVLIGTGLISFAVGVVAAVIGNLPFLGLIVPNIVSMYR + GDDLRSNLPWVCVLGMGTITVCDIISRTIIMPFEVPVSLILGTVGAVVFIVILMRQRR + LR" + gene complement(3210347..3211369) + /locus_tag="Ccel_2663" + CDS complement(3210347..3211369) + /locus_tag="Ccel_2663" + /inference="protein motif:PFAM:PF01497" + /note="PFAM: periplasmic binding protein; + KEGG: dsy:DSY1764 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="periplasmic binding protein" + /protein_id="ACL76986.1" + /db_xref="InterPro:IPR002491" + /translation="MKKSKILILTAIIAAFALMVTACSNSNIESAKIDTNEQVNESTK + PLTVEITDVHGTVTVPINPKNVVALDNRTFETLSDWGIELAAVPKGVMPTDSPYVSNE + SVQDIGNHREPNLEIIAAVDPELVIIGQRFASHYEDIKALVPNAAVIDLNFDVSEEAA + TPGENLVNGLKHSTIVLGQIFDKNEAAEKLVADFDKAIEDAKSKYNGKDTVMSVVVSG + GNIGFSAPHSGRVWGPMYEIFGWAPALEIGSASSNHQGDEVSVEAIAQSNPDWLFVLD + RDAATSSTTDAVPAQDVIDNSPALKNITAVTEGKIVYAPNDTYTNESIQTYLELFSSL + SNALSK" + gene complement(3212313..3212501) + /locus_tag="Ccel_2664" + CDS complement(3212313..3212501) + /locus_tag="Ccel_2664" + /inference="similar to AA sequence:KEGG:Cthe_0078" + /note="KEGG: cth:Cthe_0078 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76987.1" + /translation="MADKIITCKDCNSQFTFTENEQAFYKEKGFDNEPQRCPDCRRAR + KQQGNNNRGNGRSFGNRW" + gene complement(3212722..3213770) + /locus_tag="Ccel_2665" + /pseudo + gene complement(3213782..3214312) + /locus_tag="Ccel_2666" + CDS complement(3213782..3214312) + /locus_tag="Ccel_2666" + /inference="protein motif:TFAM:TIGR00168" + /note="TIGRFAM: translation initiation factor IF-3; + PFAM: initiation factor 3; + KEGG: cth:Cthe_1225 translation initiation factor 3" + /codon_start=1 + /transl_table=11 + /product="translation initiation factor IF-3" + /protein_id="ACL76988.1" + /db_xref="InterPro:IPR001288" + /translation="MEVFFIRKNELQINDEIRDSDIRLIDADGAMLGVISSKAAQQMA + ITKNLDLVKIVPNGAPPVCKIMDYSKYVFEQGKKEKEAKKNQKVVSLKEVRLSAKIEE + HDFDVKVKSAYKFLKDGDKVKVSIKFRGREMKYTSDGKDVLEKFTSVVSEVGVAERQP + KLEGKSMIIILNPNKK" + gene 3214626..3214733 + /locus_tag="Ccel_2667" + CDS 3214626..3214733 + /locus_tag="Ccel_2667" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76989.1" + /translation="MKENSWYDFEKLPAGAKKKFLICMKPIAEKTEEPI" + gene complement(3215657..3215893) + /locus_tag="Ccel_2668" + CDS complement(3215657..3215893) + /locus_tag="Ccel_2668" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL76990.1" + /translation="MPSRAGNIEVAAPALAITLAIGLLILTPVVTSKFKKAGVLERAG + AKGNAAKIKAKLENCLFADKSEFGICDLIKSVLN" + gene complement(3216073..3217680) + /locus_tag="Ccel_2669" + CDS complement(3216073..3217680) + /locus_tag="Ccel_2669" + /inference="protein motif:PFAM:PF06452" + /note="PFAM: Carbohydrate-binding family 9; + KEGG: cth:Cthe_0912 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate-binding family 9" + /protein_id="ACL76991.1" + /db_xref="InterPro:IPR010502" + /translation="MKTNSVTRDNAVYFLAEVKDANISDASGNVYEKDSVEFFLDEDN + KRCGTYEGDDSQFRVNFKNERSSDHGDLTNLYTAAKTVAGGYVIEGRVALSQTPANGK + VMGMEGQINDATGSTRIATMNIFDTTGTAYQDTKKFGQMLLTGKGLNSVSKPNFYDLK + SLVMSAKDIELQRYSNGYAVDTLIKDSEAAIADKASTQAKFDGLLIKLQAAIDNLVHN + DLSFDEKECRDIPKAYKTSDPESIRGSIVRVDYKTNTYDQDAKALDKYMLVYLPHGYD + ANDKTKKYDIVYLIHGNSESQHTAFGGVGQNTELMRAVDNLIADGKMNPMIIVTPTWY + NTAPYTAERQKEDGMFRIKNFHNELVKDIIPTIEGKFNVYAQSNSEKDLLAARNHRAV + AGFSMGSACTWYNYIYSIDYFKYYVPISLWCWQDVDSIKKEGYNLTGTDDEIKAKYLA + EIAKKAGYTKDDIRIFCATGTADLAYNGMNSQIAEMKKLTDTFVYSADLRKGNFYYIT + LKGGAHNWTCVDRYLYNILPDLFLDNK" + gene complement(3217784..3218656) + /locus_tag="Ccel_2670" + CDS complement(3217784..3218656) + /locus_tag="Ccel_2670" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cdf:CD1758 radical SAM-superfamily protein" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL76992.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MSTKNYKQIICENALSKLKRKIPYGWDLNIYRGCEHDCKYCYAI + YSHQYLGSDGFYDDIHVKTNIVERLEEELSAVGWKREIINIGGVTDSYQDAEATYKLM + PEILKLLIKYKTPAIISSKSNLILRDYDLIDELSRITYINIAATITTMDEEIRNKIEP + NASSSKDRFDMLKTFRKTNASVGLHVMPIIPYITDNYENFDALFSKAKDSDVHYVLTG + ALYLRGETRKVFFDFIQKDFPDLYENLSLLYKTGGANKDYKNNLYAMVNSLRERYSLS + NSYSKPMKEKLAKY" + gene complement(3218787..3219245) + /locus_tag="Ccel_2671" + CDS complement(3218787..3219245) + /locus_tag="Ccel_2671" + /inference="similar to AA sequence:KEGG:DSY0048" + /note="KEGG: dsy:DSY0048 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL76993.1" + /translation="MKFKGSLLAVKDVTVSKAFYVSVLEQKIIFDLGEHVTFDGGFSI + QQNYSQLIGLSESDILRKANDFQLYFEVTDLDSWNSRLKNISGLEFVHGIKEYAWGQR + SIRLYDPDMHIIEVAESMESVVKCFLKQGISVEETAERTMFPIDFVKQCL" + gene complement(3219269..3220090) + /locus_tag="Ccel_2672" + CDS complement(3219269..3220090) + /locus_tag="Ccel_2672" + /inference="protein motif:PFAM:PF00165" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; + KEGG: cdf:CD1725 AraC family transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL76994.1" + /db_xref="InterPro:IPR000005" + /translation="MLLDRSDNKFIAAQYNIYISPHEILKPYISTYNILFPDKNMLSQ + KYTLIPDASGTLSFAYDGKRIKGELWGASTRINIIGSEANNYDFLLLVELKPCGLYQL + TGVDQKEFTDIRIDLDTVDKSLNTSLCNIIEQAIEVRDLVNGLNAIFLSRMGDVYQTN + TIIGLIRKIHNNNGFLHIKELSISEHYSERHLNRLFCRYIGMNVKLFSRIVRINSAIE + QLQNSKSSFTFIAQQAGFYDQSHFINDFKALCGVSPIVYLQNMSDFSNETLKNNI" + gene complement(3220384..3221249) + /locus_tag="Ccel_2673" + /pseudo + gene 3221865..3223148 + /locus_tag="Ccel_2674" + CDS 3221865..3223148 + /locus_tag="Ccel_2674" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL76995.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 3223849..3225045 + /locus_tag="Ccel_2675" + CDS 3223849..3225045 + /locus_tag="Ccel_2675" + /inference="protein motif:PFAM:PF00872" + /note="PFAM: transposase mutator type; + KEGG: glo:Glov_3450 transposase mutator type" + /codon_start=1 + /transl_table=11 + /product="transposase mutator type" + /protein_id="ACL76996.1" + /db_xref="InterPro:IPR001207" + /translation="MSEKIIQLNEGIIKEELKNLVRSSVEETLNNLLDKEAEDLTNAA + KYERTQERQGYRSGHYTRSLQTTSGEVTLRVPKLKGVPFETAIIERYRRRESSVEEAL + IEMYLAGVSVRRVEDITEALWGTKVSPGTISELNKKAYVHIENWRNRPLQDGKYPYVY + VDGIYLKRNWGGEYENVSILVAIAVNQEGYREVIGAREGMKEDKASWKEFLQWLKGRG + LDGVKLIVGDKCLGMLESVNEVFPEAKYQRCTVHFYRNIFSVTPRSKMKLVAKMLKAI + HAQESKASAREKAKLVAEELKSMKLREAAKKLEDGIEETLTYMEFPYEHWTRIRTNNT + IERLNREIRRRTRVVGTFPDGNSALVLVCARLRHVAGTQWGSKKYLNMKHLENMDSDE + SDFIAG" + gene 3225140..3226186 + /locus_tag="Ccel_2676" + CDS 3225140..3226186 + /locus_tag="Ccel_2676" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL76997.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3226398..3226592) + /locus_tag="Ccel_2677" + /pseudo + gene complement(3226841..3227695) + /locus_tag="Ccel_2678" + CDS complement(3226841..3227695) + /locus_tag="Ccel_2678" + /inference="protein motif:PFAM:PF06445" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; transcription activator effector binding; + KEGG: cpy:Cphy_2556 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL76998.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR010499" + /translation="MDWLNRMNKAIDYIESNLADKISYNKAAQIACCSTYHFQRMFSS + ITDVPLSEYIRRRRLTLAAFELQTSDIKVIDVAFKYGYESPEAFSRAFKKLHGVMPTS + ARDIGISLKAFPKMTFSISIKGDTEMNYRIEQREAFNVFGVYTEISTDQEKAFDQVPL + FFKRCDDDGTTDAINNLLGRFDDNYTISALYDYSETTFKYMLCNYLPKDLSIPSRFTT + LVVPPSTWAIFDVPECETQSIWKRIFTEWFPTSEFEAIEGIQFEMYYGLAKHKNGFCE + IWIPVKKK" + gene complement(3228180..3228293) + /locus_tag="Ccel_2679" + /pseudo + gene complement(3228459..3229121) + /locus_tag="Ccel_2680" + CDS complement(3228459..3229121) + /locus_tag="Ccel_2680" + /inference="protein motif:PFAM:PF04892" + /note="PFAM: VanZ family protein; + KEGG: cbl:CLK_2172 VanZ family membrane protein" + /codon_start=1 + /transl_table=11 + /product="VanZ family protein" + /protein_id="ACL76999.1" + /db_xref="InterPro:IPR006976" + /translation="MNNITSALYEAVPFYIAVIPFTILNLYIIKKKRELLNVEYRITE + KIFTLGFILSLMFILSITIGNNPPLKFQNVTWQNISVRPFEGVYMQYVLGVNGNIYSI + INLFGNILIFAPWGFFLAAYYKENKNEKFKILLIAFLTSFSIETIQLFSGRSADITDI + ILNTIGVLLGRFVFCYLNIIFNEFFNNMHIRYPNNNNNKVKVFTVVQVISCLIFLVAS + QS" + gene complement(3229139..3230383) + /locus_tag="Ccel_2681" + CDS complement(3229139..3230383) + /locus_tag="Ccel_2681" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: amt:Amet_4173 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77000.1" + /translation="MKENKSIYIKLLESIIYIMIFTIIILPNTIYQSKSLQEQLIKQD + TEKGFIRLKDNYNGEDNGMSIMDFFKKPDAVIKMRKLYNNISSNNNFTYYEISRQNLQ + FIGKYTGYRNLVNGSEESINTETDGNLYTPLKSLQLGKKASTYLNMEDKINQGKYFLE + KDYYLNSNNEIPVILGDLYSGMYKIGDSFEVLYLGVKKFKCNVIGFFKKDSSFYIDHK + ENLDDKIIMPALIIDPRLSLKNKKFEQILYSIKNTGYIPYNTNDEYNHITMLINKIAN + EIDIDWGYIGKYNNVFEENPIKISLKTAKFIKILSWLIALVLTIIIYKLEKQIYKRTN + FSQNKKNRVLLQTKKSIFMALHLSLLYAITCFVMSICLKNNAIYLTLIRMQKQMVIFV + LFGFIAVTFMLNLYLKKNIRTE" + gene complement(3230695..3230986) + /locus_tag="Ccel_2682" + /pseudo + gene complement(3230973..3231225) + /locus_tag="Ccel_2683" + /pseudo + gene complement(3231431..3232642) + /locus_tag="Ccel_2684" + CDS complement(3231431..3232642) + /locus_tag="Ccel_2684" + /inference="protein motif:PFAM:PF02653" + /note="PFAM: inner-membrane translocator; + KEGG: gka:GK1908 L-arabinose ABC transporter (permease)" + /codon_start=1 + /transl_table=11 + /product="inner-membrane translocator" + /protein_id="ACL77001.1" + /db_xref="InterPro:IPR001851" + /translation="MPNIIQILSSEVNSLAIKSFIKNNVRQYAMAVALVVIMVLFQFL + TDGILFKPLNITNLVLQNSYVLILGIGMLLVILTGNVDLSVGSVAAFIGAISAILMIE + MKMPVIPTVLICLVIGALVGAWQGFWIAYIRIPAFIVTLAGMLIFRGFTMTLLNGKTL + SPYDKSFQAMANGFLLSDTMKVNGINMIAVITGLLLSLVFIFMEYRSLKNKQKYNFET + IPLSLTIAKVSVIIIAINLLTFSLASYKGIPIVLILIVGLIVIYTFITQKTIAGRHIY + ALGGNEKAAKLSGIKTKRVMFWVYVNMGLLAAVSGLIVAGRLNAATPKAGVNFELDAI + AACFIGGASSSGGIGTIIGAIIGALVMGVLNNGMSIMGVGIDLQQSIKGFVLLAAVAF + DVYTKSKANND" + gene 3232688..3233734 + /locus_tag="Ccel_2685" + CDS 3232688..3233734 + /locus_tag="Ccel_2685" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77002.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3233890..3235440) + /locus_tag="Ccel_2686" + CDS complement(3233890..3235440) + /locus_tag="Ccel_2686" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: gka:GK1909 ABC transporter ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77003.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSDLILEMRNITKAFSSIKALDNVNLEVKNGEIHALVGENGAGK + STLMNVLSGIYPYGTYTGDIVFGGKVCQFKEIKDSERLGIVIIHQELALIPYLSIAEN + VFLGNEQAKTGIIDWNQTTTKTKEILDLVGLHENPSTLITNIGVGKQQLVEIARALAK + DVKLLILDEPTAALNDEESNKLLELLNNLRTKGITSILISHKLNEVSKVADQITVIRD + GKTIETLEKGVDEISEDRIIKGMVGRDMSHRFPIREPKIGEVIMEVENWNVTHPLHDD + RKVINNVNINIRSGEIVGLAGLMGAGRTEIAMSIFGRSYGKKITGTIKLKGKPVELTT + VSKAIDAGLAYVTEDRKNYGLVLIDNIKNNITMANLQKVSKNSVVGDQDENMVAHDFR + KKFNIKSSSILQKTGNLSGGNQQKVVLSKWVFTDPEVLILDEPTRGIDVGAKYEIYTI + INQLADEGKSIVVISSEMPELLGLCDRIYVVTEGEIAGELSREEASQESIMKCIMNHT + KGYKDEQY" + gene complement(3235551..3236630) + /locus_tag="Ccel_2687" + CDS complement(3235551..3236630) + /locus_tag="Ccel_2687" + /inference="similar to AA sequence:KEGG:RL3617" + /note="KEGG: rle:RL3617 putative solute-binding component + of ABC transporter" + /codon_start=1 + /transl_table=11 + /product="putative solute-binding component of ABC + transporter" + /protein_id="ACL77004.1" + /db_xref="InterPro:IPR003016" + /translation="MNLRKIIVWALSMAMVASMAIGFSGCGSKSNDKLVGVAMPTKSS + QRWIQDGDNMKKQLEAKGYTVDLQYGEDNIDNQVAQIENMISKGAKVLVIASIDGSAL + TDVLKKAADADVKVIAYDRLIKGSENVSYYATFDNYKVGVQQATSLVKGLGADTKPGP + FNIELFGGSPDDNNAFFFYDGAMSVLQPLIDKGTLVVKSGQTGMDKVSTLRWDAATAQ + ARMDNILSANYTSAKVDGVLSPYDGISIGILSSLKSVGYGTGDKKMPVVTGQDAEVAS + VKSIIAGEQYSTIFKDTRTLAEKCVKMVDAVISNTEPEVNDTKTYNNGVKVVPSFLCD + PVPIDKSNYKLILIDGGYYNETDLK" + gene 3236910..3237692 + /locus_tag="Ccel_2688" + CDS 3236910..3237692 + /locus_tag="Ccel_2688" + /inference="protein motif:PFAM:PF08220" + /note="PFAM: regulatory protein DeoR; Helix-turn-helix + type 11 domain protein; + KEGG: csc:Csac_0239 DeoR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, DeoR family" + /protein_id="ACL77005.1" + /db_xref="InterPro:IPR001034" + /db_xref="InterPro:IPR013196" + /db_xref="InterPro:IPR014036" + /translation="MFAIERIRIIKAYLTENKQVEVNQLSQMLGVSEVTIRRDLEKLE + SEGFLTRTHGGAVLGSINDSSSSNSDPNALMEYSEIANIAIQMINDGDIIMLTNGEIN + LEIAKHLNSKNRVTVLTNDLKIASHIMEDQSAKVILLGGDIDYNTKSVFGSLTISNLN + NFYVNHLFIEIDGISNTLDISVSNIDMATFIKEAAKNANERIIVCKSSAFEKTSFYRA + GRLKDLCDKVITNNTLSDQYKNNIFNANIQLFTSISVMEGKV" + gene 3237729..3239243 + /locus_tag="Ccel_2689" + CDS 3237729..3239243 + /locus_tag="Ccel_2689" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: ctc:CTC02350 ribose transport ATP-binding protein + RbsA" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77006.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MGVPKLEIRRINKYFSESFSLCNVSLDVFPGEVHAIIGENGSGK + STVTKIISGLIKQDSGSIFIDGKPVSYNSVSGARQNGIYCAWQDINLYPNLTVAENIY + MDYSYLLKGHFNTVNLYKMFDACSIVFKEFNINIDITARISQLGYAQKQIVELIKAYI + SNAQIVIFDEPSSTLTEPEKAILYKIINTLKAKNTAIFYITHLVDEIELISDRFTVMY + QGKVVGTQTVSETAKEDVIKLLSVPIEKLRYPKLNIPLGKVVMSVKNLCSANLLSSIN + FDLHKSEILGITGLMGSGRSLLAKCLYGLTPIKNGTIEIDGQVQTINDPNDAFRNGIA + FLPEDRTDSSIFSYLNLENNVTVSALKRFEQYKYLHNEIMTSVTDSYIKKLSIRPGNL + DDLLKNYSGGNQQKAAVARWIMTRSKIYILDEPTRGIDVASKVDIYNCMLDLVSKGAS + IILISSDIEEILGMCDRILVLAEGNITGEFQRSEATKEAIMYEAIINCPERYLG" + gene complement(3239373..3240419) + /locus_tag="Ccel_2690" + CDS complement(3239373..3240419) + /locus_tag="Ccel_2690" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77007.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3240792..3240938) + /locus_tag="Ccel_2691" + /pseudo + gene complement(3241575..3243687) + /locus_tag="Ccel_2692" + /pseudo + gene complement(3242081..3243127) + /locus_tag="Ccel_2693" + CDS complement(3242081..3243127) + /locus_tag="Ccel_2693" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77008.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3243735..3244019) + /locus_tag="Ccel_2694" + CDS complement(3243735..3244019) + /locus_tag="Ccel_2694" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL77009.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene complement(3244120..3247107) + /locus_tag="Ccel_2695" + /pseudo + gene complement(3247497..3248258) + /locus_tag="Ccel_2696" + CDS complement(3247497..3248258) + /locus_tag="Ccel_2696" + /inference="protein motif:PFAM:PF02661" + /note="PFAM: filamentation induced by cAMP protein Fic; + KEGG: acl:ACL_0438 Fic-domain containing protein" + /codon_start=1 + /transl_table=11 + /product="filamentation induced by cAMP protein Fic" + /protein_id="ACL77010.1" + /db_xref="InterPro:IPR003812" + /translation="MDFKRILDKQKLYEEGKDTLHEVTIESYNNAFEVEFTHNSTAIE + GNTLTLMETKVVLEDGISVGGKALREIYEVVNHKKAFHYVKQCIKEGLPLSEKIVKDI + HALVTENIIVGGIYRNEEVFISGASHTPPARNEMYIQIKNFFADLMYKKDLNPIELAA + WTHAEFVRIHPFQDGNGRTSRLIMNYQLMSYGFLPISIAKENRLDYYNALDKYAAQGI + LDDFANMIAELEEAQLDKYISIIPEQNKSHQIQQM" + gene complement(3248440..3248626) + /locus_tag="Ccel_2697" + /pseudo + gene complement(3248733..3249317) + /locus_tag="Ccel_2698" + CDS complement(3248733..3249317) + /locus_tag="Ccel_2698" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hmo:HM1_0131 resolvase, + N-terminal:recombinase, putative" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77011.1" + /translation="MTGKENWDTTTIQKMLKNEKYKGDTLMQKTFTEDFMTGKKRKNI + GQRNQYYVKDSHPAIVSPEVFDKVQKEMAKRARLKSKEDGTIETSESKYNGKYFLGNL + LVCGDCGASYRRRTERGKVVWRCATRIEKGREACTHSPTLNEGWVQNALTKDVCQNGV + YDEGIIRNKVDEIKIFDSYSMVCYKNGGQVKILY" + gene complement(3249379..3250552) + /locus_tag="Ccel_2699" + /note="ribosomal slippage" + CDS complement(join(3249379..3250272,3250274..3250552)) + /locus_tag="Ccel_2699" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL77012.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSASRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLMTEIAAKYEIQP + NQLTRWKSEFIKNANRAFSVDADETEQLKQAHEAQIDELHRQIGQLTVERNWLKKNLN + NSASRQSRQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIY + TRDSSLGYRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPY + LLRGLTIDRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYKPSTFSDPRGPS" + gene complement(3250833..3256583) + /locus_tag="Ccel_2700" + /pseudo + gene complement(3252666..3253949) + /locus_tag="Ccel_2701" + CDS complement(3252666..3253949) + /locus_tag="Ccel_2701" + /inference="protein motif:PFAM:PF02371" + /note="PFAM: transposase IS116/IS110/IS902 family protein; + KEGG: tte:TTE1030 transposase" + /codon_start=1 + /transl_table=11 + /product="transposase IS116/IS110/IS902 family protein" + /protein_id="ACL77013.1" + /db_xref="InterPro:IPR003346" + /translation="MNCTQNNKLMQITPETMVVGVDIGSEVHFARAFDFRGFEFSKRA + FRFENTREGFNAFDIWVTDLMKRNQKTKTFVGMEPTGHYWYGFGSHLQNMGVEFGMVN + PYHVKRSKELDDNTPSKHDRKDPKTIAMLVKDGRYLIPYMPEGVYREIRNLMELRRQN + VVQLISIQNRVKRWLAIYFPEFSTVFKKWTGKAALLTLKHFPTPQAVIKTGEEKIVAT + WKEEVKRAVGHKHAQKLIKAAEESIGLKHGLESAVLEIETLLDEYMIHGHRLELIMQK + VEAQVKEIPSASMLLGIKGIGIVAVAGFLGAVGDISRFDAPEQIVKLFGLNLRENSSG + KHQGKTTITRRGRSDGRYAIFQAVLPLVARNPEFRQLHLYYINRDNKPLKKMQSIVAL + CGKLIRVFYAILKTGSHYDAEKMMNDIKRPMMKAA" + gene 3254813..3255962 + /locus_tag="Ccel_2702" + /note="ribosomal slippage" + CDS join(3254813..3255091,3255093..3255962) + /locus_tag="Ccel_2702" + /inference="protein motif:PFAM:PF01527" + /ribosomal_slippage + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: cth:Cthe_0590 transposase IS3/IS911" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL77014.1" + /db_xref="InterPro:IPR002514" + /translation="MKKRRTFTPEQKTKIVLEVLKEAQTLTEIAAKYEIQPNQLTRWK + SEFIKNANRAFSDDADETEQLKQVHEAQIDELHRQIGQLTVERNWLKKKLNNSACRQS + RQSMVDKKHKKLTITRQCQLLGLNRSTLYYQPHEPDRSEEYRIKWLIDEIYTRDSSLG + YRRMTHILHRDHGININKKRTRRYMREMNIYGICPGPNLSKRGRLKYVHPYLLRGLTI + DRPNQVWSVDITYCRMPKGHMYLAAIIDWHSKYIVGYELSNTMDKSLVLNLVKRTITA + HGKPEIINSDQGSQFTCEDYINLLKENNIKVSMDGKGQALDNICIERFWRSLKWEKLY + LEEYSTPKQLRNIIQEYIAYYNIYRPHQTLEYRTPGEVYYRTLAEKTA" + gene complement(3256576..3257343) + /locus_tag="Ccel_2703" + CDS complement(3256576..3257343) + /locus_tag="Ccel_2703" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: bat:BAS3158 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77015.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MNTNSKVLSVEELVKTYESGKNKVQALKSISLTLHECEMLAIMG + SSGSGKSTLLNLIGALDSPTSGKILIRGQEIQDYHIEPYATKYRSQNIGFVFQAYNLL + KDLTVEENIALPLILKDVNKKEIKNKTTEMIELVGLSKWKTHRPVELSGGQQQRVAIA + RALITSPPIILADEPTGNLDYNTTIEILDIIKEMKEKLKQSIILVTHDPMVASYADRV + IFLSDGNIIDEYTKNSEKGDISQILDKFRKILEVRNG" + gene complement(3257365..3258125) + /locus_tag="Ccel_2704" + /pseudo + gene 3258260..3258598 + /locus_tag="Ccel_2705" + CDS 3258260..3258598 + /locus_tag="Ccel_2705" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77016.1" + /translation="MDKITDTKTEFRLKQWTQIVQTCQASGMTAVSWCNQNNVNIKSY + YYWLRRIRTLTIENGPLELQSKGQQIVPVSFRQTAAVTIHINSVSIDIPDGTSKDTIA + AVLSALKTIC" + gene 3258592..3258948 + /locus_tag="Ccel_2706" + CDS 3258592..3258948 + /locus_tag="Ccel_2706" + /inference="protein motif:PFAM:PF05717" + /note="PFAM: IS66 Orf2 family protein; + KEGG: cth:Cthe_0516 IS66 Orf2 like" + /codon_start=1 + /transl_table=11 + /product="IS66 Orf2 family protein" + /protein_id="ACL77017.1" + /db_xref="InterPro:IPR008878" + /translation="MLGDISKAEDIYIVCGYSDMRKSIDGFAAIIKGTFGMDPFSPSL + FLFCGKRRDRLKALYWEGDGFVLLYKRLENGSFKWPRTPEQARRLTMQEFRWLMDGLA + IDQPKAIREAKQGDIY" + gene 3259024..3260613 + /locus_tag="Ccel_2707" + CDS 3259024..3260613 + /locus_tag="Ccel_2707" + /inference="protein motif:PFAM:PF03050" + /note="PFAM: transposase IS66; + KEGG: cth:Cthe_0515 transposase IS66" + /codon_start=1 + /transl_table=11 + /product="transposase IS66" + /protein_id="ACL77018.1" + /db_xref="InterPro:IPR004291" + /translation="MQKIDITGLSPNQIEYVSSLEKTVENQQVRIEQLTELLIKSQKA + LYGQSSEKRRYVFDEDSGQLSLFNEAEVEAGNKAEEPTVQTIVAAHTRKPKRTKEELA + ETVPVVEVVCDLDKDKRTCNICNTDLRYLGKEYVRDELEIIPAQVRILRYIRLNYVCK + ECEKETCEANIVKAPVPKPVMKRSLASASTVAYVMYQKYANGMPLYRQEKDWANQGVK + LSRATLANWIIRPSHEWLEPMYDAIKKNLVTEPLIHADETVLQVLKEPGRRATTESRM + WVYTSGQSLTPAVLFEYQPTRSGQHARRFLEGFSGYLQTDGYSGYNAVPNVIHCGCWA + HLQRKFEEAIPNGADNKSSKAAIGYDYCNRLFAMEKKWIELSSENRHQERRKNAKPLL + DEFWQWVSHLNPLQNSNLGKAVTYALNQKETLINFMLDGCIEISNNRAENAIRPYVTG + RKNWLFADTTRGAKASAIVYSMIESAKANQLNPYMYLVYLLSKLPDLKELTQKSLTPY + LPWSPELPCWCHKDSNKAPQD" + gene complement(3260928..3261974) + /locus_tag="Ccel_2708" + CDS complement(3260928..3261974) + /locus_tag="Ccel_2708" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77019.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3262296..3265406) + /locus_tag="Ccel_2709" + CDS complement(3262296..3265406) + /locus_tag="Ccel_2709" + /inference="protein motif:PFAM:PF02463" + /note="PFAM: SMC domain protein; + KEGG: chu:CHU_0040 ATPase involved in DNA repair" + /codon_start=1 + /transl_table=11 + /product="SMC domain protein" + /protein_id="ACL77020.1" + /db_xref="InterPro:IPR003395" + /translation="MGKKIKEVSIEAFRAYEKLQPFDFRHNDSGKIADLVVIYAPNGY + GKTSFFDAIEWAITDEIGRLKSTDAIKQEVKNEKGDILKNKNSEVAQGTVRFISETDD + VFEIKTKKRTGNMKSDYRPGELEVISKDLQGILNEKNTFCTTNMLAHDKITSFLQNYT + AEDKTKALQVFWDTNGYSGILEKISNLYDEIVKKKMALSAEVLKEKQELKQYKFETNK + EHDVRHLINDFNLNCIDYMINAENLIENIDTVLEKTTEILKKVQENRNQYESNLNTVE + LLTNEFPNYLSKKEELEIKKSEKRECEIKLQILNQIDKLIVQNERLKSEQLEICGVVN + NWGMFQNIKLELLEKNDLKKEIANSKSELQKSIIQIRENINISKANVEQSEQLKKKEL + EEKNLFETELRKYNDNKVNLNKYSRLNNKASYILTKRVEKRKISSDAISSIEVFIEDK + CNIDQIKHYLTDEILCTNEKLVALKGEKVNQEKNIFQLEERYKNAMLLHDKINQLVLQ + GKELVEDTKSCECPLCHAKYDDFSILIARISAEYTSSLELDGIKKELDEGRKLNVDTI + ESISKESQKLKTSIQDILEKIKKEYNKQTERIHNLQLRISDWNNLITNLQNDNEIIER + KYDAQNISIHDIEAINFKKAQLDMKVLDLSTNIEVEESKITTSLDLVKNIETELKNKD + LKIVELEEKISELKNNNVYQSILIYLSSKNYREDNDDLQSVFKKIEEEKNNVSKKIAE + TEMEITDSQNKIQGTIEEVNLQYNTLLIQLQELGAGLDGYMLRCKKAFENSNVEEKDI + GEQLEKLRVAFLLERNKVDESISNLNSIITDTKSLKEQKVWLNKTKEYERKNSKLDLI + KSKLENLEKSKTVVENYIVEQTNEYFNSNTINQIYHKIDPHPTMNHIKFLTENSGKGL + QTHIYTYDKSEEDKMSPVLYLSSAQVNILSLCIFLAKVLTEKGTTLNTIFMDDPIQHL + DGINLLAFIDLLRTITTVMGRQIVISTHNEHFYSLIKVKMDDRYYLSKFIEINSVGEI + RKTIKG" + gene complement(3265390..3265935) + /locus_tag="Ccel_2710" + CDS complement(3265390..3265935) + /locus_tag="Ccel_2710" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: sbn:Sbal195_4565 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77021.1" + /translation="MSFEEYKQGVLALNCEDNTEWINKVTCWIDKEPGYNIYIFQVIV + EGENDLEKYYETITAAIATEFQINLKKTIEKWNIYLVFECKKRISEELKQKIEQDKYS + TRKMVWDSLNEKELGDKDYIKDRLLYLYIDAKSPVEEIPLLEKVKSIDFNLYRAIENT + DKDINTQIAIYLGGDLNGQKD" + gene complement(3265925..3267241) + /locus_tag="Ccel_2711" + CDS complement(3265925..3267241) + /locus_tag="Ccel_2711" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: plu:plu4346 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77022.1" + /translation="MIDKFYDQVVVKTVYKGNCGSGVLLQTENKNYSYLVTAWHCVNQ + EETVDLGSLTIYRQVNGSLQLLTATLQDILVISQNDLVVIKLDYLSDIPLYRTIAVSV + GDIVSITGFPRAMENPQSRIKRYPLDAKIISLPGEGIIEINSERSMSTFSQNAKEIMS + SFSGSGIFKIVENEIFLCGIITDLSSPEGAFDAISGVSRDCIQQKLAEKSWELLCDIE + GCSFNLFKEGVIEIFEEPMNRICSVQIPIIRDNVTPNDILKRCGKKLVWPYSNANLQC + KEIWEGWLLYLIFRCMEDQENLKSENYYIVNDENGVRKVKLIYVTNKTKLSDFLKDYL + QNAYRDIHEGDFLIIKTNKQPATKILPSSQIDKIVTDISNVICVEREIRIDDVKSNVK + RISLMHIRKLIDELEIVIEANVDEGMDSIELERRLGKRIGEMLHEF" + gene complement(3267238..3268287) + /locus_tag="Ccel_2712" + CDS complement(3267238..3268287) + /locus_tag="Ccel_2712" + /inference="similar to AA sequence:KEGG:Sbal195_4563" + /note="KEGG: sbn:Sbal195_4563 beta-lactamase + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain-containing protein" + /protein_id="ACL77023.1" + /translation="MPINIRALKALYGDCIILTYGLEQNNYILIDGGIGKECYRSLKA + FTDSLKKNNTNLSLLVLTHIDSDHIDGVLKIFSEKDFDFSTINKMWFNYGDFLNKELG + VIRDKEKNDIFIQDETTKISWKQGTSLEKVLKQAGFQYEKVIKRFDEFDIEEAHITIL + SPSLEILREFNEHWMIEEERETKISAASDYDIPIEELNNLEFHENISLANKSSLAFIF + EYQQKKALFLGDASAIEIEKSLSELGYSETKPLEVDICKTSHHASKHNTSNGLVKMLK + CKNYIISTNLTASGRPSKECLSRIICNSEQPINFYCNYEIDFNQIFTKKELDKYGMKF + ITIDEKGLNLEDLHR" + gene complement(3268624..3268890) + /locus_tag="Ccel_2713" + CDS complement(3268624..3268890) + /locus_tag="Ccel_2713" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77024.1" + /translation="MRRSGHALYGENIVRLTIEVNEKDMLLSDFDLYHYPLNYWYAPL + NEDDDRKVENECLSLSSEQSIRRELLLHPTKDPKFYKTMTESWE" + gene complement(3269034..3269279) + /locus_tag="Ccel_2714" + CDS complement(3269034..3269279) + /locus_tag="Ccel_2714" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77025.1" + /translation="MKIDQEICNSYPKSKDFILRYFKEYKSSIDRTLRKYISDLKYYD + LFYCGKDYESAVAEFCDSSNVKWSGIENYKEDLAVLA" + gene complement(3269290..3269457) + /locus_tag="Ccel_2715" + CDS complement(3269290..3269457) + /locus_tag="Ccel_2715" + /inference="similar to AA sequence:KEGG:Swol_2268" + /note="KEGG: swo:Swol_2268 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77026.1" + /translation="MLTVEQYISQMKKKDKLAEFDFQNHAENMTTVIKYVMDYFNNYL + NPELMTMKYQS" + gene complement(3269612..3272335) + /locus_tag="Ccel_2716" + CDS complement(3269612..3272335) + /locus_tag="Ccel_2716" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: btl:BALH_0836 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77027.1" + /translation="MSRTDSVKVNKFYMSPIKPENDVIRIEGIFVIKSPETLNSKIKS + LMEKQYLDKSRKYYKDYRAFKPKWFTLTVALLSDPVLYARDDFYTCSGEWLYLYERID + IELFKLKFKKWCRENTDADFYEYIKDDIEGITISQENIEMSGNPHNLQKHENELMYKL + LPAYLAYKISGEMDIQVPSSKKGAVSYRFYKVQNEDKSAELAAVPFRKYVDRDGKEFY + WTHAVDLRVVSIPGESIPYLIIKLRTARFAYKKPYASNKRLKALIYKNIGKGFEIYEL + GLKMDQAKWKWKYNIADGINDNLIEKIFDWQDTIVAEPNKFMSNDDLGAGIIYGSHIK + GKGHKIRTGTTEKDREYISEGILKAIRNHLNNTNIEVPEFITLDNIAKEIDTKAKTQK + AEFRFEQIPAELVITAFYRNDAWLEYLKDALVELFDLKIFKHDKYGIFKAKAAHFDKS + SSTLFVTHKEDKKEVTKKIILNPVKMQNSNGEFIISESIDCYTSFLNYLDTYVTEGSD + IRASLFELEDEEYFDHDEWIDPKSTIRNVFAVKNTLTQFISLEEGEYINRQEKSENEL + KEYKANMHKYINGIKDLFRQLGILGKSVPQMDQEPILIGLWYMSKLKHSFDFSSSCEE + IPYKILIPILTIIEDNIIKIAVFSESVYKDHRRMGDNFEVKWLPYKDGLVKIANMASI + FDELNGDYCEKLKQQFIVNAIRSVKESNPERQLILFSNAQNVRTHLKDLSNTRIGSGK + LNIGIEKNSDSIFDDVVNIRILTEADEVPAWVNLEDDYSLSLHTLKKGVFRLNNRVYY + SVQSKSDAHKNNLVIKEDKPNETNNRQAAIEIAVYNCNEDDVPPYVDLTDKLRSASSP + IQFSTALNLPIPVHMAKKAEEYLVAYYDDYFLKQHLIKEKAKEVAKANNIR" + gene complement(3272328..3275213) + /locus_tag="Ccel_2717" + CDS complement(3272328..3275213) + /locus_tag="Ccel_2717" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: btl:BALH_0835 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77028.1" + /translation="MDYLDKSIKKIYLKVQYIEYVKSKERSINIDVTPKKCEKIVIRK + DELDRAAKDMDEQDKKKGKSYNWEKRVRDLVFTIPQQNLTIKDSDELTVDGIKHMVGA + LSVGKSTFIKICSYLLAKKGKRVTLFINTITEVLQTVDYFNDIGIRAVPLLSPNQIKD + HSNQYLTTLKSRHELFDKKPSFRYLSDSCLLVNSNMTIEGVMQDREKPCTSLMSGEKK + VYCPFIYSCPRYNNVKDLNDAQIVITTINSAVQSYLPAPFCDKKITILEYLIRTCDLA + FIDESDRVQANLDTLFSTTIHLYGSEDLFYEKIMERQMDYFKKGTLPDSPLLIDFIKD + TISLENYITGIIEFFKNTDRPGKLFSKDIFGKVIKSSMMWEELFFEAIGVSTKDLKDL + PSGDPLKQQVTKARESFRESYWEFQSEHIKGLMEYSSKSQMNYLARAITSNIVDEAKL + RTDIQRFTKLPLKNFFKHKRSDIEKYDKLEKLKSNLDRPLSDVVHRAEEKVRFILQIY + MLEYKLKCLLQSWTAVKNIDTDFIGQDNKLPGILKEEFAGIVPALPVDVNYGFRIKED + NNSFAIDYYYYEGVGRWILLNFDKLYRDLDGVGINCILLSGTSNLEYSPKYHVDIPVS + CLLRKKDANRPRLEMSFPAHIAVKVSGTYRENRIDALQKAAYNISAKEINPNGTSFLD + SIIETLEPGRKRILFTLGSYENCKEFSKALNSFGYSARSLVRPGSADANDKNVLERSN + IEDVAKLNIKHLSIPLGIGRGYNIITESLEMIDESLAVQGKKTVAAMGAVFFIARPYY + MPDDANTLLSWLNSVYVSEIKQFKGSRKNTFEGFIRQLIKRLNATQRSYENMFGYTSL + DSWQRNRLLGDTLVDVYQLCCRLIRGDVNAKIIFLDGSFAPNTFSCGKKSDSPETSML + IGWRELLKKMIQSESSIADKEINKELYSILLDGLSELKLVEGDVINV" + gene complement(3275354..3275728) + /locus_tag="Ccel_2718" + CDS complement(3275354..3275728) + /locus_tag="Ccel_2718" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77029.1" + /translation="MRLEYNQQYKDLIKNIVKEIRCNKEEAELICTVEMVAIFLLDSY + RLSSIAIQKVIEIFRLVSTSDLPNFNNLDKAKLSKLQNLLPHWTYKTVVEKAYMEYSS + MPLGYRIGSISFTEKKKLVSLL" + gene complement(3275712..3276905) + /locus_tag="Ccel_2719" + CDS complement(3275712..3276905) + /locus_tag="Ccel_2719" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cyt:cce_4310 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77030.1" + /translation="MKYEKDVIEEGIKRLNFYAYSLTEIFESDSNKKLLDNWKKASLL + LQAITIETKSEVIFPLTINEQIDIITKPICDWGIAHFDKFDGILEGLIWNNSGEWHLT + DVARSLAGDYNPGEGAQFYRELQIHVRSNEIADSYYTTLRELAVEKPLLDEKEYLVEE + EKLEEKASSRDKLIFKLFLNAEQPSHLLKKIYEEIPPDVIYDKRIYICPYCGYTLSKK + IKCNTMGKEYEEFYCISKKCFERKGKSEVKCIHINGQMKYYRPRAEIMHSVVIPGRSE + ILLRDKLTELIRDKSFTVELYPNADETDIKIEFSDGEIWIADVKDWDIPFKLASHLNI + RGFAKDKGISYNKAFLVLPDEVQNPYINVLRNNWIDAKLYQIIRVKEFIELVKERADD + SEAGV" + gene complement(3276929..3277915) + /locus_tag="Ccel_2720" + CDS complement(3276929..3277915) + /locus_tag="Ccel_2720" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: lsp:Bsph_2414 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77031.1" + /translation="MAEYWKHNNNNKIEFSVSFTKFRLFEECEFKYALQTYGTWSEGL + CVKKEDRNEVLCLKRLNTMDTILGTVIHDAIAEIASLPNPTPYCVPDNIYEYLYNDYN + ERLTIAKHNTYTVLNGARTSADKLYLKEIYFKEDRDTVTKKYEKVIEKLKRIANNLPK + SLSYQDILEVGVKILLSDKTVGENKFPNFRYQGDIVYAKVDFLYEIPQSNNLILVDWK + TGEKDTVKDKEQLLLYAIYLAESKYRGDYSKVNGIFYVNEYLLENKRFTYFLNDNDIE + KFKEDFQIKVDKLKAKNKSVEDNIPLDIGHFKKAEDENVCRLCLYKAICAKY" + gene complement(3278373..3279098) + /locus_tag="Ccel_2721" + CDS complement(3278373..3279098) + /locus_tag="Ccel_2721" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_0102 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77032.1" + /translation="MKKLTHLSLVGKLEPYGAGFSEPIPINIKDILKGKTTFDLSVSE + FEKYLVGISFDIIASTSDYAEHKTVGYLNGKFYNIEQALEDNTLTDVADNAFDDIDQY + TFDIYELVTELQNELSYEPGEMPSLCFNIFSIDNIYIEPEYRNNKFGSCAIILLSDYL + KTQFNRQAGYFVLEPIPRYNPEKEHEIVDCQPVFIEKKLNRFFNNLGFKSKGDYLYFN + LNYDMQKIYINKIKSLNKKKPKK" + gene 3279523..3280680 + /locus_tag="Ccel_2722" + CDS 3279523..3280680 + /locus_tag="Ccel_2722" + /inference="protein motif:PFAM:PF01420" + /note="PFAM: restriction modification system DNA + specificity domain; + KEGG: lsl:LSL_0915 type I restriction-modification system + specificity subunit" + /codon_start=1 + /transl_table=11 + /product="restriction modification system DNA specificity + domain protein" + /protein_id="ACL77033.1" + /db_xref="InterPro:IPR000055" + /translation="MGEMAEETYGGGTPSTLNKAYWNGNIPWIQSSDLVEHQLFGVSP + RKYITESGVCSSAAKLVPENSIAIVTRVGVGKLATMPFAFATSQDFLSLSNLKCEIWF + FAYSIYKKLQRDIDAVQGTSIKGITKNELLSKSICAPSDILEQTSIGNFLHLLDDAIT + LHKRKLDDLKDLKHGYLQQMFPQAGESVPLVRFAGFTEPWQKRTLGDVAEIVGGGTPD + TANPAYWNGNIEWFSPTEIGTETYASISHKKISELGLKNSSAKMLTGGSTILFTSRAG + IGDMAILTRPAATNQGFQSLEIRKTFDVYFIYSMGSKIKEYALKNASGSTFLEISGKN + LGRMKLRIPTFKEQTAIGNFFRNLDDQITAQKQKLSQLKQLKFAYLQKMLI" + gene 3280764..3281705 + /locus_tag="Ccel_2723" + CDS 3280764..3281705 + /locus_tag="Ccel_2723" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: lwe:lwe0480 bacteriophage integrase, putative" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL77034.1" + /db_xref="InterPro:IPR002104" + /translation="MIASKSQYFYEYFSEWIKIYKYGAVRPVTYQKYLMTLRRLTELS + PNLKICELDKRSYQTLLNDYAETHERQTTMDFHHHLKSAILDAIDEGLLSIDPTRKVV + IKGKTATKRKNKYLSQFELQSLLKNLSLTDSPNWDWLILLISKTGLRFSEALALTPND + FDFSTHKISITKTWNYKGAEGGFMETKNTSSKRVIPIDAPLAVNFETLTKDLAANELI + FVQGRVFNSTVNSRLKYLCKTAGVPVISIHSLRHTHASLLIFAGVSIASIAKRLGHSS + VTTTQETYLHIIRELENQDNDKIMNHLSALDVNIRAL" + gene complement(3281712..3282941) + /locus_tag="Ccel_2724" + CDS complement(3281712..3282941) + /locus_tag="Ccel_2724" + /inference="protein motif:PFAM:PF01420" + /note="PFAM: restriction modification system DNA + specificity domain; + KEGG: cbk:CLL_A2082 Sau1hsdS1" + /codon_start=1 + /transl_table=11 + /product="restriction modification system DNA specificity + domain protein" + /protein_id="ACL77035.1" + /db_xref="InterPro:IPR000055" + /translation="MSNNIPEIRFKGFTLAWEQRTLGEMAEETYGGGTPSTLNKAYWN + GNIPWIQSSDLVEHQLFGVSPRKYITESGVCSSAAKLVPENSIAIVTRVGVGKLATMP + FAFATSQDFLSLSNLKCEIWFFAYSIYKKLQRDIDAVQGTSIKGITKNELLSKSICAP + SDILEQTSIGNFLHLLDDAITLHKRKLDDLKDLKHGYLQQMFPQAGESVPLVRFAGFT + EPWQKRTLGDVVECVTRKNKGLKSTLVLTISAQHGLIAQKDFFDKEVASKDVSNYYLM + KNGEFAYNKSYSNGYPWGAVKRLDNYEIGVLSTLYIVFKPTTIDSEFLTQYYETTHWH + NEVAQYAAEGARNHGLLNIATSDFFETVLAIPTNSNEQTAIGNFFHTLDRQIIAQEQK + LNRLKQLKSAYLQKMLI" + gene complement(3283006..3284583) + /locus_tag="Ccel_2725" + CDS complement(3283006..3284583) + /locus_tag="Ccel_2725" + /inference="protein motif:TFAM:TIGR00497" + /note="TIGRFAM: type I restriction-modification system, M + subunit; + PFAM: N-6 DNA methylase; + KEGG: llm:llmg_0659 putative type I site-specific + deoxyribonuclease" + /codon_start=1 + /transl_table=11 + /product="type I restriction-modification system, M + subunit" + /protein_id="ACL77036.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR002296" + /db_xref="InterPro:IPR003356" + /db_xref="InterPro:IPR004546" + /translation="MSDLNNQLWASADILRGKMDASEYKNYLLGLIFYKYLSDQELRA + VYEEEHGKVSEYPNRHDQLAGLLEWYKEDSADVKDIISKKLGYFIVPDYLFYTLRKKA + DEYELQISDLQNAFIELGRQGNHFTGLFDDIDLTSTKLGANAQQRNITITEVIKALDE + IYLFGHDGDVIGDAYEYLIGQFAAGAGKKAGEFYTPQTVSKIISEIVSIGQEEVAPFH + IYDPAMGSGSLMLNIRQFVKNPWKVHYHGQELNTTTYNLARMNLILHNVEQSQMRLRN + GDTLDEDWPSDEPYLFNAVVMNPPYSANWSADDKFLSDPRFERYGKLAPKSKADFSFL + LHGFYHLNENGTMGIVLPHGVLFRGASEGVIRKTLLEMGAIDAVIGLPANIFYGTSIP + TTVLIMKKNRGKRDVLFIDASKDFEKQKNQNNLRKEDIQKIVDTYKKRESIHKYAHLA + DYDEIVRNEYNLNIPRYVDTFEEEVQIDIVALSNEMVDLNLQIKQKEMEFLGLLDDLA + ITDGTRELIEATKRIFT" + gene complement(3284580..3287705) + /locus_tag="Ccel_2726" + CDS complement(3284580..3287705) + /locus_tag="Ccel_2726" + /inference="protein motif:TFAM:TIGR00348" + /note="KEGG: llm:llmg_0658 type I restriction-modification + system restriction subunit; + TIGRFAM: type I site-specific deoxyribonuclease, HsdR + family; + PFAM: type III restriction protein res subunit; protein of + unknown function DUF450; + SMART: DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="type I site-specific deoxyribonuclease, HsdR + family" + /protein_id="ACL77037.1" + /db_xref="InterPro:IPR004473" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR007409" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MTPENQIEKMFIDILTMRGNQWTYRGDIKTEIALWSNLRGHINR + INLAALEGILLTDSEFEQIKNEFTRLTQTPFLAAVWLRGENGIAQIPIEREDISKGKI + TLTLFSNKDIAGGISSYEVVSQIVPTTEGRTTRGDVTLLINGLPIIHIELKNEVAKDG + YRQAFKQIERYAQSGFFNGIYATVQIFIISNKVSTRYFARPRTNNDFESAKKFLFNWR + EQDNTPVEDLYDFTRKVLSIPMAHELISRFTILVDDKKNQKFVMVLRPYQIHAIKTIM + QQAYSHKGGFVWHATGSGKTITSFVATKLLAQSAVSVSRTVMIVDRRDLDSQTKDEFS + KFASEYNTGLSTGDATDNTLIVGINNRRELVHNFISKKNSNTIIVTTIQKLSHAIRDC + AEAEVNKFEKLKGEHIVFIVDECHRAVSDKEMKAIKKFFPKSTWIGLTGTPIFEENKK + QENGTYARTTFDQYGELLHAYTTKNAMDDKSVLDFQVEYHSLMSEDEETRLYLSKLSK + KYPDDDPQIKLLSMTDAIDKEALLETSDYENDAYIEAMLKKIFRHQSILEKFRVIDGI + PTMSAILTTHSIAQAKLIYHKLLVLKKTGELIIGNPLDERRRLNDPEFPRVAITYSVA + ENQDGIIDANNEISEIMEQYNAMFGTKYTDINLYNQNINKRLARKEAQYQKDGQWLDF + VIVVDRLLTGFDAPTIQTLYVDRELRYQKLLQAFSRTNRTYPGKNIGMIVTFRKPKTM + VANVRDAIKLFSNEERDWENLVPKQYAEVKQSFKVAYKNFEEAYKELAKDPENIKKQL + STIKTFQTLSKLEEAIKSYEEYEDEFDKFRNITQTISDELGNIENLKAEVKETFAEHN + MGDEEIAELFKIEFSSDQRATLEEKIDSYYIAQLLRDIQKEDNKQRFDEIIKKKPPIV + KVAYDEILGTLSDEQEVIDKVASHFKKLIGEIIAETAAVLKVSDDDLLVSFHEYRNDK + VEVPYINVIIDKSSITQEEFERKFHKKFRERRRTIEAYWKATIEDKLLPLREELSNLA + IELKKAEVTQS" + gene complement(3288974..3289255) + /locus_tag="Ccel_2727" + /pseudo + gene complement(3289259..3289521) + /locus_tag="Ccel_2728" + /pseudo + gene complement(3289580..3291187) + /locus_tag="Ccel_2729" + CDS complement(3289580..3291187) + /locus_tag="Ccel_2729" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: dsy:DSY3426 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77038.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MPGARRTVSVIPADPTYNIHSRTEEIKLRVAAYCRVSTELEEQQ + SSYQAQVDHYTRAIQTNPKWIFAGIYADEGISGTNTKKRVEFNRMIEDCMAGRIDMII + TKSISRFARNTLDCISYIRQLREKNIAVYFEKENINTLDGAGELLITILGSLAQEESR + SLSTNTRWGVVHRFQQGKIYVNHNKFLGYTKNENGDLVIVPEEAALVKRIFRQYLEGE + SIINIKKGLEEEGITTVTGRQKWSTSVIDKMLSNEKYMGDALLQKTYTVDYLTKKRVK + NNGIVPQYYVEDSHEAIIPKPLFYRVQEEKARRAELHKGKAGTSKYSSQFALTEILIC + AECGSHYRRTTWAKNGKKKIVWRCINRLEHGTKVCQYSPTLKEENIEMAVMEVINSVI + YGHRGFADTLKGNILTAIKENTEQSSQKRIDEQLYTLQEQLLQYVELNAKAGSGSNAY + DTKFEQISKKISVLQKQKKEFVEKEKLRANNEQRIDDITKFFDSSNGITQFDNELVRR + LIQSVKVVSKEKVIVQFKSGKVVERLL" + gene complement(3291157..3292137) + /locus_tag="Ccel_2730" + CDS complement(3291157..3292137) + /locus_tag="Ccel_2730" + /inference="protein motif:PFAM:PF07508" + /note="PFAM: Recombinase; + KEGG: dsy:DSY3427 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Recombinase" + /protein_id="ACL77039.1" + /db_xref="InterPro:IPR011109" + /translation="MQRHMPLGYKISDGSITIDSEKADIVKMIFSSFISGKSMMKISQ + ELTKAGVLNASGKPSWNHCSVGNILKNIKYIGDEYHPAVITENDYRTAETIRQERARQ + LNHSNNYLANSKTGIYPFSGKLICGECGAIFKRYTEHHNANKKCNWKCKRYIVNNRVC + CRSAVIDDAQLEQAFTDIVKKVLEEPKLIYTRYPRPHEISSLPDNPKIRKLSNNPELI + YKSGQSCSDPREAVRLLFDNAAEEYMNCSADDFTYQTNKLKNSLNDITSVEAFDRGLF + LQIIRNITIYTSGILRFEFINGTAAETAYESNRKTKKERLKCREQEERYQ" + gene complement(3292153..3293733) + /locus_tag="Ccel_2731" + CDS complement(3292153..3293733) + /locus_tag="Ccel_2731" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: dsy:DSY4592 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77040.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MPKVTVINPIQKTELKSDETKYRVCAYCRVSSDSKEQLQSFNAQ + VEHYTAMIRKNLQWKFCGVYADEGISGTSRSKRDEFKRLIKDCESGKVDIVITKSISR + WARNTADSIEVIRKLKSLGIGIYFEKENVNTLSAESELVLTILSSIAQEESISISKNN + RWSCQKRFQNGEWVPSYLPYGYDMDAKGNIIIKEPEAQVVRRIFNDFLSGKGAYTIAK + GLTEDGIATKRGNSCWSEGTVRDILQNEKYAGDLLMQKTFTTDTIPFLRKRNKGQKQK + YFIEDNHEPVISREQEEKVNKIIQYRKAQQKSSDTAKYNNRYPFSGRIICGECGQAFI + RRTIFKNKPYQHIQWSCGRHIRDITQCCMKAIKEEEVKLAYIQLFNKLKCNTNKILVP + LLEGLKKISAEDYAGEEVTECNNRIYELNEQNQVLNRLRSKGYIDSALFILKSNVIET + ELEELKSKRNRILDNTNVSFEIEQTKQLINIVKAHEGLIEEYDENMFEKTVKVITVKS + QTQLVFTLINGLELMEYL" + gene complement(3293815..3293976) + /locus_tag="Ccel_2732" + CDS complement(3293815..3293976) + /locus_tag="Ccel_2732" + /inference="similar to AA sequence:KEGG:BCE_0416" + /note="KEGG: bca:BCE_0416 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77041.1" + /translation="MSQEQILNEVKYKTALHMLNTMLEAGMLTLSEYRRIDEMNRISF + SPDLAGVYT" + gene complement(3293990..3294370) + /locus_tag="Ccel_2733" + CDS complement(3293990..3294370) + /locus_tag="Ccel_2733" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; + KEGG: hmo:HM1_0135 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77042.1" + /db_xref="InterPro:IPR006119" + /translation="MVQQKRAWLYCRIDAPEDKQGSLKGQEKELIDYAEQMGFEIIGI + SRDIGSGLNFKRNGIAEVSAAAAMGRMDALLITNISRIGRDTGKTIRFITMLYKMGIR + IYSPAEGEIAALANEHNPFNKVQG" + gene complement(3294953..3295345) + /locus_tag="Ccel_2734" + CDS complement(3294953..3295345) + /locus_tag="Ccel_2734" + /inference="protein motif:PFAM:PF04545" + /note="PFAM: sigma-70 region 4 domain protein; Sigma-70 + region 4 type 2; + KEGG: efa:EF2290 ECF subfamily RNA polymerase sigma + factor" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL77043.1" + /db_xref="InterPro:IPR007630" + /db_xref="InterPro:IPR013249" + /translation="MIKEKIQSDISWEEWLIDEDRKIANSDRRYRYHNRSYDAMGEKL + VSQESITKYIPIEEIISETSGFLESITQLHLHNAIKKLNSKQRLIIEMVFWQGYTQQE + TAKILHCSQANVSKVLKRAITQLIKEYI" + gene complement(3296650..3297243) + /locus_tag="Ccel_2735" + CDS complement(3296650..3297243) + /locus_tag="Ccel_2735" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77044.1" + /translation="MKKIKAIMVILSISLLSIGCTQQTMVDIERTLKQNFDCLSVQSS + VFDVPPIIGGRQANYYCSFKDNANNDCYLIADSLVRDYILIYKNSVVESDKEIITSKY + KDLFESILNPSNLPETDYITTSAIDSTKILKAKSNIGMFKDGNIGVMQITKHFIYRDE + KLGKAIGPSEVSIVVLFDTTTKRYYQYDVGNKPKIIE" + gene complement(3297417..3297833) + /locus_tag="Ccel_2736" + CDS complement(3297417..3297833) + /locus_tag="Ccel_2736" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77045.1" + /translation="MKRIKKLVASALIVSSILVTSSVGSFAQTNNTPHIAKQQVSILG + GFLPRGGFVGSITIGDDIIMWGEDYNYYQVVVKEWNSLADFQADPVSGGSKPQTLSTT + NNYMEYDFTSGCVYKVYVYGMSGSKRTTIGGYEWEE" + gene complement(3298342..3298602) + /locus_tag="Ccel_2737" + CDS complement(3298342..3298602) + /locus_tag="Ccel_2737" + /inference="similar to AA sequence:KEGG:HM1_0623" + /note="KEGG: hmo:HM1_0623 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77046.1" + /translation="MGYFTSLYASDLPHRAVAVYMYLRDRADKNGKCYPAIGTISKEL + KLSRSTVKRAIADLEKSGRLKKEKRWRDNGGRSSNMYYIQVL" + gene complement(3298613..3300433) + /locus_tag="Ccel_2738" + CDS complement(3298613..3300433) + /locus_tag="Ccel_2738" + /inference="protein motif:PFAM:PF02534" + /note="PFAM: TRAG family protein; + KEGG: hmo:HM1_0622 TraG/TraD family protein, putative" + /codon_start=1 + /transl_table=11 + /product="TRAG family protein" + /protein_id="ACL77047.1" + /db_xref="InterPro:IPR003688" + /translation="MPSQVYTLIAVTAVMFFVIGGLSLLAHYYTLNGIKSKTVGDGQH + GTARFATRNEIKKTYTHIPYEVGKWRRNENLPQVQGIVVGCKTSGKTVTALLDEGDVH + CLMIGAAGVGKTANFLYPNLEYACASGMSFLTTDTKGDLFRNYGSIAKDYYGYKVSVI + DLRNPTRSDGNNMLHLVNKYMDAYLKDPDNLSLKARAERYAKITAKTIVNSGGMDAGA + YGQNAFFYEAAEGLLTFVILIIAEYCPPEKRHIISVFKLIQDLLAPSGVKGKNQFQLL + IEKLPPEHKARWFAGAALNTAEQAMQSVLSTALSRLNAFLDSELEQILCFDTAVDAEE + FCNTKHAVFLVMPEEDSTKYFFISLIVQQLYREILSVADEAGGRLKNRVMFFLDEIGT + IPKIDSAEMMFSASRSRRISIVAIIQSFAQLEKNYGKEGAAIIIDNCQLVLFGGFAPN + SHSAEILSQALGNKTVMSGSISRGRNDPSQSLQMIQRPLMTTDELKTLPKGNFILAKT + GCYPMKTILKLFFKWGIVFNKVYEITEKSSRKVAYADRMELEQEILKGHAACNYINED + EPEDTVLQDGFSHINKQRYIEPEQADTQQEQKSKPPLRTD" + gene 3300498..3300965 + /locus_tag="Ccel_2739" + CDS 3300498..3300965 + /locus_tag="Ccel_2739" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cdf:CD3213 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77048.1" + /translation="MENYTTEELTEALRAINSVIHKCEKALKKFPEGNSHHTLLRNRL + KAMYISKMLITEALSKMELSTEPRTLSDDSCDSELLLSNLSQLHTTDLGIERIRKNLR + LNTNDVVGWCRSKIKAPNASISRKGKNWYITVDSCEFTVNAHSYTIITAHKRT" + gene complement(3301003..3301935) + /locus_tag="Ccel_2740" + CDS complement(3301003..3301935) + /locus_tag="Ccel_2740" + /inference="similar to AA sequence:KEGG:CKL_3863" + /note="KEGG: ckl:CKL_3863 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77049.1" + /translation="MTQYIHFTEEQKQRANSVELEDFLERQGEQLIRSGRDKRLKSDH + SITVRGNRWFDHSTEKGGLAIDFVQKFYEVSFQEAVVLLLGGEKGIEFTQASESTDEQ + EKKTFVLPEANSDMRRVFAYLIKQRFIDRNVLACFAREKLLFEDAKYHNAVFVGFDEK + GVARHAHRKSTATGSGFRINVEGSNPAYSFHYISKNSHPHTLFVFEAPIDLLSYISLH + PQNWENSSYVALNGVSGQPILKLLELYPQLQRVSLCLDNDKAGFKAAGRIHKILQQQG + LEDVVYDVSEHKDWNEDLIASYSQEQEKQAIMMR" + gene complement(3302070..3303119) + /locus_tag="Ccel_2741" + CDS complement(3302070..3303119) + /locus_tag="Ccel_2741" + /inference="protein motif:TFAM:TIGR00832" + /note="TIGRFAM: arsenical-resistance protein; + PFAM: Bile acid:sodium symporter; + KEGG: cbe:Cbei_2112 arsenical-resistance protein" + /codon_start=1 + /transl_table=11 + /product="arsenical-resistance protein" + /protein_id="ACL77050.1" + /db_xref="InterPro:IPR002657" + /db_xref="InterPro:IPR004706" + /translation="MKPSRLSLLDRFLTLWIFLAMGLGVLLGWAVPEFSEILSKMSVG + TTSLPIAIGLIVMMYPPLAKVNYKELGKVFKNPKVLILSLVQNWVIGPILMFILAVVF + LKSDSALMTGLILIGLARCIAMVIVWNSLADGDNEYAAALVAFNSIFQVVFYSIFAYL + FVTVLPPLFGLTGYEVHISMGEVAFSVAVYLGIPFILGMLTRLILEPIKGTEWYTKKF + IPKISPLALIALLFTIIVMFLYKGQYIVQLPLEVVRVAIPLLIYFLIMFTVSFFISYK + SGIDYNKTTTLAFTAASNNFELAIAVAVAVFGIESKEAFTAVIGPLVEVPVMIGLVNV + ALFWRKKYFYKKIKI" + gene 3303381..3304555 + /locus_tag="Ccel_2742" + /pseudo + gene complement(3304786..3305025) + /locus_tag="Ccel_2743" + /pseudo + gene complement(3305132..3305950) + /locus_tag="Ccel_2744" + CDS complement(3305132..3305950) + /locus_tag="Ccel_2744" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpr:CPR_0876 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77051.1" + /translation="MVTIIVVAVLIFVSVSAVYANSSVKLIVNNQEIKPDVSPKIING + RVMVPIMWVAEALGTYVRWDELNKEVNNISNPKPLSSLSEADAKLYPFQQKDGVYYEF + ILEVKGNRKYFDWINVINPTYRPQLLYNDVNNDGKKELIIILTTGYGTGVHIEKIHII + NPNTLTEFDIETPDDIIKNNVKTKITSDENNVKIQITIGSKETTIIKKKSDAIYWFDN + VAFRNSYHYEVINNKLMIRILAQVSPGGSIGEIQATYVFDNGKYIAKTINFIKD" + gene complement(3306450..3309331) + /locus_tag="Ccel_2745" + /pseudo + gene complement(3309391..3309804) + /locus_tag="Ccel_2746" + CDS complement(3309391..3309804) + /locus_tag="Ccel_2746" + /inference="similar to AA sequence:KEGG:CKL_3870" + /note="KEGG: ckl:CKL_3870 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77052.1" + /translation="MTKETGKVRTGFYINKEVLERCDELLPMANVRSRNEFVTEALNF + YCGYLTSQKAENYLLQTLSSVLTSTVRDTENRIARVDFKVAVELSKLAHVIAYSHDID + NEALHKLHIKCLDEVKRINGTVDFESAHKYQKRET" + gene complement(3310199..3310450) + /locus_tag="Ccel_2747" + CDS complement(3310199..3310450) + /locus_tag="Ccel_2747" + /inference="similar to AA sequence:KEGG:HM1_0617" + /note="KEGG: hmo:HM1_0617 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77053.1" + /translation="MKKSIISISFDAEKLGAIKQYMGRKEAELEKEMEDAVQKLYEKF + VPVAVREYIEGREASEQKKPKISVKKSQSAPLLTNINEG" + gene complement(3310496..3310858) + /locus_tag="Ccel_2748" + CDS complement(3310496..3310858) + /locus_tag="Ccel_2748" + /inference="similar to AA sequence:KEGG:HM1_0614" + /note="KEGG: hmo:HM1_0614 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77054.1" + /translation="MNETEIKLMFPSEKLDALRYFMSKKEVTIENELKDYLDKVYEKT + VPAYVREYVESRLEQNSTQEQLASNDSQVQQQPQRQPRQTRRQRAQTAEINVNAVQSQ + VENTPINEEENQGMNMSL" + gene complement(3310855..3311991) + /locus_tag="Ccel_2749" + CDS complement(3310855..3311991) + /locus_tag="Ccel_2749" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; + KEGG: dsy:DSY0034 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL77055.1" + /db_xref="InterPro:IPR000064" + /translation="MADPATITLAIKVAAKAATDKRIWKVIGVIIAALLTPIILFILV + VLNTLSAGADHNNTAVKLCFSSGAIPHTVPAEYANYIKIMRYSFSELDKEIMKISSQA + ESGSLDSIRVKAVFYSLFFGSENLKLDSAQYRAFTDCFVNYEKHTRTVKNDNGSNTEE + EYTVTVPLESMPEIYIRLQKVLNRQITSEEQVNASEIYSRALYGKGTQTEGDSFGWWE + DWSPEKIKDIKGQLPEGTLGAEIVQLAFTRLGDPYSQELRGTGRYTDCSYLTMWCFKK + VSINIPGTAAEQAKFCAEKGLTISKNDLQPRDLIFWSYRPNGRFMNITHVGVYAGNGK + VIDASSSKGQVVYRDLYNTEKQVMYGRPYILGQKINKNTGGSKG" + gene complement(3311996..3315192) + /locus_tag="Ccel_2750" + /pseudo + gene complement(3312394..3314250) + /locus_tag="Ccel_2751" + CDS complement(3312394..3314250) + /locus_tag="Ccel_2751" + /inference="protein motif:PFAM:PF00078" + /note="PFAM: RNA-directed DNA polymerase (Reverse + transcriptase); + SMART: HNH nuclease; + KEGG: efa:EF2326 group II intron reverse transcriptase + maturase" + /codon_start=1 + /transl_table=11 + /product="RNA-directed DNA polymerase (Reverse + transcriptase)" + /protein_id="ACL77056.1" + /db_xref="InterPro:IPR000477" + /db_xref="InterPro:IPR003615" + /translation="MTKQKKLRHLEYYDLQEYFDNLYAQSKQGKSFTNLMKVISSEEN + IRLAYRNIKSNSGSHTSGTDTLNIKDIEKLSVEKLVEMMQRKLAWYQPKPVKRVEIPK + PNGKTRPLGIPTIVDRLVQQCILQVLEPICEAKFYERSNGFRPNRSAEHAMAQCYRMV + QKQNLYFVVDVDIKGFFDNVNHSKLIRQMWAMGIRDKQLICIIKQMLKAPVVMPDGET + LYPTKGTPQGGILSPLLANIVLNELDWWISSQWEDMLTHREYYVSVNNNGSLNKSGVF + RTLRRSALKEMYIVRYADDFKIFCRKRSDANKIFVAVKKWLKDRLKLEISEEKSKVVN + LKKHYSEFLGFQFKTVRKGRKFVVRSHMSEKAIKRETEKLKEQIKEIAHCKIKDEEIL + QIKRYNAMVIGIHNYYRYATNISIDCMKIQRLIYRVMFHQLKGQLKRNGSIQRTVINK + NYGKSRMLRFIHQEPICPIGYVQTQNPMYKKRQVCKYTVEGREEIHKNLKFDESVMAV + LHMLAVAYIPSRSIAYMDNRVSLYAAQYGKCAVMGNVLWINEIHCHHKITLSQGGTDE + YKNLVIIHIDVHRLIHSVKPDTIQVYLNKLKPNQSQLDKINKFRSLAGNPAI" + gene complement(3315230..3316258) + /locus_tag="Ccel_2752" + CDS complement(3315230..3316258) + /locus_tag="Ccel_2752" + /inference="similar to AA sequence:KEGG:DSY4546" + /note="KEGG: dsy:DSY4546 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77057.1" + /translation="MDMKNQRFGIEIELTGLSRKEAGQILSEYFGTQLAHNGGFYDSY + SVLDSQCRRWKIVSDASIKEECKVGRPDPTYRVELVSPICQYGDIVAIQELIRKLRSA + GAIANSSCGIHIHVDASPHNANTLRNITNIMASKEDLIYKSLRVNVAREHTYCKKVDE + HFLEELNRKKPKTLDAVSRIWYNGEDGRNQHYHDSRYHCLNLHSVFSKGTIEFRLFNS + TTHAGKIKAYIQLCLAISHQALTQRCASRTKTQSTNEKYTFRTWLLRLGLIGDEFKTA + RLHLLENLVGCIAWKDPAQAEQQKERLRQKKEKEAIRTDAVEQAEQNNESIEQTGAVE + GPGFSMGM" + gene complement(3316322..3318154) + /locus_tag="Ccel_2753" + CDS complement(3316322..3318154) + /locus_tag="Ccel_2753" + /inference="similar to AA sequence:KEGG:HM1_0605" + /note="KEGG: hmo:HM1_0605 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77058.1" + /translation="MGKGILNVPRVVQKDAHIQEFLDMIAPSVIKFYTDHFICGNTYR + CVWALREYPTATDEQAILCHLGEKDGITLHIYTRHVTPVEEKKIISNAANKNRMRRTN + ANDLQQSVAAESNLQDVANIVAGMHKNKEPLLHVAVYIELLAYDLDRLKLLQTEVLTE + LVRSKLNVDRLILRQQQGFVCVMTSGWNVFGEQFERVLPASSTANLYPFNYSGKTDTN + GFYLGRDKFGSNIIVDFNKREDDKTNANILILGNSGQGKSYLLKLILTNMREAGMNII + ALDAEMEYEELTNNLGGCFIDLMSGEYIINVLEPKVWDENGNDVDTNIPSTFKCSSRL + SQHISFLKDFFRTYKDFDDRQIDTIEIMLGKLYDKWGINDSSNFDILKSGNYPILSDL + YELIEQEYKSFDESHRQLYTADTLREILLGLHSMCKGAESKFFNGHSNITNGDFITFG + VKGLLQASKNIRNALLFNVLSYMSNELLTKGNTTASIDEFYLFLTNLTAVEYIRNFMK + RVRKKDSAVILSSQNLEDFNLEGIREYTKPLFAIPTHQFLFNAGSIDSKFYIDTLQLE + ESEYNLIRYPQRGVCLYKCGNERYNLIVQAPEHKARLFGNAGGR" + gene complement(3318342..3318932) + /locus_tag="Ccel_2754" + /pseudo + gene complement(3318933..3319193) + /locus_tag="Ccel_2755" + CDS complement(3318933..3319193) + /locus_tag="Ccel_2755" + /inference="similar to AA sequence:KEGG:HM1_0601" + /note="KEGG: hmo:HM1_0601 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77059.1" + /translation="MYIYPDNLKSKPILWLWQLRDISIIGIGCLISVFMLSQLRMLLP + ATVTALYGFLSIRFEDTSILDFIKYACAFFLTKQQFYEWGHN" + gene complement(3319678..3320517) + /locus_tag="Ccel_2756" + CDS complement(3319678..3320517) + /locus_tag="Ccel_2756" + /inference="protein motif:PFAM:PF02678" + /note="PFAM: Pirin domain protein; + KEGG: fma:FMG_0205 putative pirin" + /codon_start=1 + /transl_table=11 + /product="Pirin domain protein" + /protein_id="ACL77060.1" + /db_xref="InterPro:IPR003829" + /db_xref="InterPro:IPR008778" + /translation="MERKIKQQVRGYKTQDGAGVNLVRVLGNGTVQEYDPILMLDSFD + STNPDDYTAGFPMHPHRGIETISYVYRGYMTHRDSLGNEDTIGDGEVQWMTAGSGILH + EEKLPASERLLGVQLWLNLPAKNKMVPPAYHSIKNSEIEEIELENGKLRLLAGEFQGT + KGYLSKYLPLDYYDIHLDPNASIVLNTDSERSVMVFTLLGDAYIGDALIKEKTAVKLT + SGDHVKIKATDKNTQVLFISSTLLAEPVVWGGPIVMNTKEELNKAFNELKEGTFLQNK + ISY" + gene complement(3320849..3321002) + /locus_tag="Ccel_2757" + /pseudo + gene complement(3320993..3321094) + /locus_tag="Ccel_2758" + /pseudo + gene complement(3321231..3321428) + /locus_tag="Ccel_2759" + CDS complement(3321231..3321428) + /locus_tag="Ccel_2759" + /inference="protein motif:SMART:SM00704" + /note="SMART: zinc finger CDGSH-type domain protein; + KEGG: gtn:GTNG_2257 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="zinc finger CDGSH-type domain protein" + /protein_id="ACL77061.1" + /db_xref="InterPro:IPR006622" + /translation="MANVKVQVLDNAPIIIKGDSELLDGEGKTMEVSSELHLCRCGLS + QNKPHCDGSHQEKFKSKVRAK" + gene complement(3321695..3322282) + /locus_tag="Ccel_2760" + CDS complement(3321695..3322282) + /locus_tag="Ccel_2760" + /inference="similar to AA sequence:KEGG:MA2044" + /note="KEGG: mac:MA2044 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77062.1" + /translation="MGSYIGIGFVYNGMSGERVEIELKNIVNFLISHNGNINSIKFSK + DEYGNVWIQDSLNNKCIDDFYSSLCNGYFGELHITCSILSVQNLNVCIRIEKAKKYFG + LLLDISEEELIGVNSSENINRITEEIIEFFNELYKASVFEYAICDNEAEIQYSPEEFQ + SIGEAVYSIAALPEKNKKSLKIIKNSWHIDGLTAR" + gene complement(3322300..3323940) + /locus_tag="Ccel_2761" + CDS complement(3322300..3323940) + /locus_tag="Ccel_2761" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cja:CJA_3689 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77063.1" + /translation="MKAKAILSKKPEDLSPFGVGNKGSKNKVNNKKPNVRTTDIRKLI + DIVLHDPFYLTRDEFMFLQKRIGYQKAMILVEEGRKRKSQKKIGRKESNTVTPLSKAL + KQKEINSSLQTDTIEKKAIQMKKDDGNNDTERIGLPGNLRAGLEKLSGTDLSDVKVHQ + NSNEPQKVGALAYTQGSDIYIAHGQEKHLPHEGWHAVQQKQGKVKPTMQMKTGTLVND + DKDLEKEADIMGSKATKESSSMIGTVQFKKSYSIQQGNKVIQRSSKKENSQTDDVLDG + IQTAIDVIGFVPGVGDIADGVNAGISIVRKDWWGAVFSGIALIPIIGSAIAIPMKTIS + KVGGKIGSLSKTVKNAIKQLVKLLGGAKKVTSKLNGYLKDLKGLLRKLPDLMESVANS + RFVKWLAGKKVVKTFLAFAKKIKNGINTVCEKAEEVFSNVKKVITKGTAKAAKLPNTS + FTINKLQHEFKHAGDFGVTGNWNKVTGEIYQKAIQKHIDTAKDVYKSTYRGQDVYVYI + NKTTGVGAYTDLLGNYVGGWKFSSDQINFHLKNGAKIK" + gene complement(3324041..3325749) + /locus_tag="Ccel_2762" + /pseudo + gene complement(3325746..3325973) + /locus_tag="Ccel_2763" + /pseudo + gene complement(3326044..3326904) + /locus_tag="Ccel_2764" + CDS complement(3326044..3326904) + /locus_tag="Ccel_2764" + /inference="similar to AA sequence:KEGG:HM1_0599" + /note="KEGG: hmo:HM1_0599 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77064.1" + /db_xref="InterPro:IPR002132" + /translation="MFIWDFVADTVLGQVVDWIYSELVGFLGEFFTMMGSMGAELFDM + SWVKSVVLLFSYLAWALYVTGLVVAVFECGIEYQSGRGSIKDTALNVIKGFMAVSLFT + TVPVELYKLSVSLQSSFTSGITKITGSDGSISSMAKATLTNFGGLGMNTIIAIFILLV + MGYAIIKVFFANLKRGGILLIQIAVGSLYMFSVPRGYIDGFTAWCKQVVGLCLTAFLQ + TVILTTGLMVFNSNMLLGLGLMLASSEIPRIAGQFGLDTSTKASLMSTVNAAQSAVNI + TRTVVQTVAK" + gene complement(3326971..3327051) + /locus_tag="Ccel_2765" + /pseudo + gene complement(3327189..3329084) + /locus_tag="Ccel_2766" + /pseudo + gene complement(3329233..3329328) + /locus_tag="Ccel_2767" + CDS complement(3329233..3329328) + /locus_tag="Ccel_2767" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77065.1" + /translation="MIGISERGKVGTRSGLQRYDTFVGKAESKTV" + gene complement(3329788..3330066) + /locus_tag="Ccel_2768" + CDS complement(3329788..3330066) + /locus_tag="Ccel_2768" + /inference="similar to AA sequence:KEGG:CKL_3882" + /note="KEGG: ckl:CKL_3882 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77066.1" + /translation="MKMYKKSLFILCVSLLLSVMLCPIVYAAGSGDVAGAIEGTWTSA + SQQIKTVVNKVVFPAIDLILAVFFFAKLGTAYFDYRKHGQFEWGATRS" + gene complement(3330151..3331875) + /locus_tag="Ccel_2769" + CDS complement(3330151..3331875) + /locus_tag="Ccel_2769" + /inference="similar to AA sequence:KEGG:DSY4556" + /note="KEGG: dsy:DSY4556 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77067.1" + /translation="MKLINIILLILTLLISSTLSQTVSAADGEGNIDHGGGGMGNSSQ + ENYWTGDDGVRVTVIRVSDRKTVTVPIDFSNAKPSNIAHFGKVCKLTYTTGRLLTPST + STYECKKPDKAMPKIVRTESRNPDIKAIKEYFCSEYMITTISNLTGFNYKTLTSGDYK + ILLEPIAYMTFKGINMAMTATEAALYDQRLSGELRKRMVSLSNKNLPLAMFLEVPDLG + YPAWSGSTTTPASDEDIISSLGLGIVKFKETEPPQVSNNSYTYRVNTEVITSVTVSGG + RSDPDNPVTVQFNIGDTVYTVGNVYYPEGESQLAWVRWKTPSKPQTMTINVSVSNNGR + TDTGIITAKIVDLSGKDPPNPAADDRNHSYSAPSIPSYEQKTSASWGVWNPQWHQNLV + WQSDMNWYSDNNGGGYWEDDGEWKDKGWWDFSCDSYRASLSALMSITPDKKVPTALGK + KMKSGYGVNQMTEANVSTNQSSAVTEAQTAVTYFPEFLYKTYLRLLEQTNSGYRSTFE + FPENRFSTYDRRTHFTPVWMPDGSYTPYTYLFDCWTPNGMLSVNLTDSVSINGSLWDD + WGAIPVTT" + gene complement(3331947..3332498) + /locus_tag="Ccel_2770" + CDS complement(3331947..3332498) + /locus_tag="Ccel_2770" + /inference="similar to AA sequence:KEGG:HM1_0593" + /note="KEGG: hmo:HM1_0593 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77068.1" + /translation="MKKKQMKWLIVTGLGIICIILIAAIASKFKWEAPKEIAVASPSA + AQVNPAVVTPSEALKTEKNIVIQDINPSYTTSTNTAVSSGTKQTIQPDPVKPKTPTVS + KPKVQEKVTPKAPDSAKKPVSKQPDAVKNKSSGKTEPKGGEKRDGKIYVPGFGWVKDN + GGGVHQEIVGSDGDINKQVGTMD" + gene complement(3332597..3333142) + /locus_tag="Ccel_2771" + CDS complement(3332597..3333142) + /locus_tag="Ccel_2771" + /inference="similar to AA sequence:KEGG:DSY4557" + /note="KEGG: dsy:DSY4557 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77069.1" + /translation="MKKINGIIRDKRGSSFPLIIAAVLSVMLIMCGISEYIRLIIISQ + GVRDALQSAAISTINDNYANVYNCIREGYAGAYIPDDAEWADSIDYGDIYSRLDKALG + LKSENGFHVKYSGEKQEFILSDLSVDINNPPMAPYETINANKFLADTEIKLEVPVSFA + GKVLPPLQIKLKVQARYMPLF" + gene complement(3333139..3333465) + /locus_tag="Ccel_2772" + CDS complement(3333139..3333465) + /locus_tag="Ccel_2772" + /inference="similar to AA sequence:KEGG:HM1_0591" + /note="KEGG: hmo:HM1_0591 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77070.1" + /translation="MLVIALAVKVFPVYIAKSQIDTFASELCREAETAGRVGSETTRR + AQVLKEKTGLDPKVTWSQTGNMQLNEEFTVTVTLQKDIGLFGGFGSFPITLKAQAAGK + SERYWK" + gene complement(3333503..3333649) + /locus_tag="Ccel_2773" + CDS complement(3333503..3333649) + /locus_tag="Ccel_2773" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77071.1" + /translation="MLNNDIKQRLSEKLGFNAEEDYKLEKAFREVGKVTGCKCIENNL + KQMW" + gene complement(3333664..3334536) + /locus_tag="Ccel_2774" + CDS complement(3333664..3334536) + /locus_tag="Ccel_2774" + /inference="similar to AA sequence:KEGG:HM1_0589" + /note="KEGG: hmo:HM1_0589 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77072.1" + /translation="MIILLILFTALLTIGLFLIFADILKLPTMKAAKAMLNTGKKSKR + VSQIIETYLMTWAVKLSKIIYMDEYRKSRMSNVLKAADISMTPEVYTAYAIVKAGAAL + MGVIPCLLVFPLFSSVFVILAVLIYFKEFKKADEKLKFKREQIESELPRFAATIEQSL + KSNRDVLAMLESYKKNAGVAFRRELDILTADMRSSGYEAALTRFEARMNSSRLSDVVR + GLVGVLRGDDGTVYFQMLGHDFKTLELHRLKGEAKKIPPKIRIFSFVMLMCFMFTYLV + IIAYEILKSLGGMF" + gene complement(3334542..3335471) + /locus_tag="Ccel_2775" + CDS complement(3334542..3335471) + /locus_tag="Ccel_2775" + /inference="similar to AA sequence:KEGG:HM1_0588" + /note="KEGG: hmo:HM1_0588 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77073.1" + /translation="MTFIQLTACIGFIVGCFILFGISPMEFTTGLFSFLTSNPVAIRD + EINETTKRKKLSFLRREINEMQGILENTDRSRYFSVICLFSLLLFAIGAGIAILIKNV + FLIPVLAVGFMFIPFWYIRLTSTHYKRSITAELETALSIITTAYLRNEDIVTAVEESI + DYLNPPVRNAFAGFLTQIRLVNPDIDAALRAMSNKIENDVFHEWCDAVGACQYDRSLK + TTITPIVTKLSDMRIVNSELEYLVLEPRNEFIIMALLVIGNIPVMYLLNRSWFNTLMY + TAIGQIVLAVCAAAIFISASFVIKLTKPIEYRR" + gene complement(3335468..3336979) + /locus_tag="Ccel_2776" + CDS complement(3335468..3336979) + /locus_tag="Ccel_2776" + /inference="protein motif:PFAM:PF00437" + /note="PFAM: type II secretion system protein E; + KEGG: hmo:HM1_0587 type II/IV secretion system protein" + /codon_start=1 + /transl_table=11 + /product="type II secretion system protein E" + /protein_id="ACL77074.1" + /db_xref="InterPro:IPR001482" + /translation="MKSKRQKNPRVHSPKNNSVRLAGYTEDFTSIKDASVSQADQRVL + TQYIADNQKLFFGSKDCFRDFSEVLQEVQEYISSKYSTLIIEGGKDEVKDQIKRYIAK + YLQDYRIAVKGMSDQQLIDSLYTEMAEFSFLTKYIFGTGIEEVDINAWNDIEIQYSNG + STVKLEEHFDSPEHAVNVIRRMLHVSGMVLDNASPAILGHLSKNIRIAVLKTPLVDED + VGVSASIRIVNPQSMVKQDFVDGGTATDEMLDFLSECLRYGISVCVAGATSSGKTTVA + GWLLTTIPDNKRIFTIENGSRELALVRKRDGKIVNSVIHTLTRSSDNEKQNIDQDMLL + DMALRFNPEIICVGEMRSSEAYTAQESARTGHTVLTTIHSNSCEATWRRMATLCKRKY + DINDDTLMALVTEAFPIVVFTKQLENKQRRMMEIKECEIRADGMRCFRTLYRFNITEN + RIENGKLLINGHHKKEQQISQSLQKRFLENGMPQEVLNLILKGQYPDPKGVKS" + gene complement(3336976..3337791) + /locus_tag="Ccel_2777" + CDS complement(3336976..3337791) + /locus_tag="Ccel_2777" + /inference="similar to AA sequence:KEGG:HM1_0586" + /note="KEGG: hmo:HM1_0586 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77075.1" + /translation="MLNFIKGSIFSRNIGGLSEKSDTEIAPQVLAVWGSPGSGKTTVA + VKLAKYLADKRKNVALLLCDMTAPMLPCICPPTDLECEKSLGSILAAARITDTLIKQN + CITHRKEKYLTMIGMLKGENVFTYPPYNGELAKELIECVRRIVPYVIIDCSSTIATDI + LSAVSLMEADSVLRLVNCDLKSVSYLSSQLPLLNDNSWNAEKQYKTASNIKNGEAGES + IESVLGNTVFKIPHSDELENHFLEGDLFQELVLKDSRGFRREIRKISKEVFGV" + gene complement(3337791..3338675) + /locus_tag="Ccel_2778" + CDS complement(3337791..3338675) + /locus_tag="Ccel_2778" + /inference="protein motif:PFAM:PF08666" + /note="PFAM: SAF domain protein; + KEGG: hmo:HM1_0585 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SAF domain protein" + /protein_id="ACL77076.1" + /db_xref="InterPro:IPR013974" + /translation="MNILKNRTVLGVICILLSLVICFAVTPLFNSSISQRTKIVRVSR + DIKAGDKITGNMVQIVEVGSYNLPSGVIKNKDDAIGKYASADMKTGDYIFNTKLSAAP + AAENSYLYSLNGEKQAMSVTVGSFASGLSGKLMSGDIVSVIAPDYKNQGTAVIPEELQ + YVEVIGVTASTGYDTNTSENTEKQTGNKEKELPSTVTLLVSAVQSKTLAALESDGKLH + LSLVYRGIKENAEKFLDYQDKVIQDLYFDKDKKTEKEMETDTQKATINTEPKAGESNE + SNNTGMAVGDAMQEGEGE" + gene complement(3338672..3339133) + /locus_tag="Ccel_2779" + CDS complement(3338672..3339133) + /locus_tag="Ccel_2779" + /inference="protein motif:PFAM:PF01478" + /note="PFAM: peptidase A24A prepilin type IV; + KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader + peptide-processing enzyme" + /codon_start=1 + /transl_table=11 + /product="peptidase A24A prepilin type IV" + /protein_id="ACL77077.1" + /db_xref="InterPro:IPR000045" + /translation="MQDNCIGQGGLLFVLQAALFIALLMTASVFDVKKRIIPDTICIG + VVLTGLICFEPSRLFGCFSALPFLVAALMGGKIGGGDIKLTAATGVVLGIGGSIAAMI + IGLTAMLLFYAAYAILQRLRKRERQKAFPLAPFLSIGCIAAYLINTGGITL" + gene complement(3339123..3339341) + /locus_tag="Ccel_2780" + CDS complement(3339123..3339341) + /locus_tag="Ccel_2780" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hmo:HM1_0583 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77078.1" + /translation="MRKAVLNQINAVLNLRNVLQSQSGEGFVDTAIKILIAVVIGALI + LAGLYTLFGSTILPTLTQRIKEMFNYAG" + gene complement(3339398..3339778) + /locus_tag="Ccel_2781" + CDS complement(3339398..3339778) + /locus_tag="Ccel_2781" + /inference="protein motif:PFAM:PF04026" + /note="PFAM: SpoVG family protein; + KEGG: hmo:HM1_0580 SpoVG septation protein" + /codon_start=1 + /transl_table=11 + /product="SpoVG family protein" + /protein_id="ACL77079.1" + /db_xref="InterPro:IPR007170" + /translation="MKKTGNFQTDISQNTVQSPQMKVDVKIGSIRPEGSIRATASINL + NDCFAIRNVKVMESSRGMFVAMPSYKAGNGEYKDICFPVTAAFRQQLNDAVINAYHQA + LIQGQKSAQYTQVQTQEEHGIQMS" + gene complement(3339845..3340399) + /locus_tag="Ccel_2782" + CDS complement(3339845..3340399) + /locus_tag="Ccel_2782" + /inference="similar to AA sequence:KEGG:HM1_0579" + /note="KEGG: hmo:HM1_0579 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77080.1" + /translation="MKGISIKNDRIMFYGNTAGYVEGEKAVVDTIFQCKEIRDYLLKE + RKMEVEWTNGVYDKLANSRPNIDGSIPVLKSCRIYQLKPDVNVLMKFIGYDELIKNFG + EPKLENYNVVYDGHLETNDLESIYEKFNVCHPDGYSGHSLSISDVIELYSSKDSTFHY + VDSFGFKEIDFKEQEQQNRQSMKL" + gene complement(3340430..3343894) + /locus_tag="Ccel_2783" + CDS complement(3340430..3343894) + /locus_tag="Ccel_2783" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + SMART: PKD domain containing protein; + KEGG: hmo:HM1_0578 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL77081.1" + /db_xref="InterPro:IPR000601" + /db_xref="InterPro:IPR001119" + /translation="MKWKGKNVCIMVLVFCFLMIGNAYSSAKQFPDAVNHWSEKAITR + LATKDVISGYPDGTVRPDGIVTRGQFASILAKSLGLDTSKSEESQPFNDIYHHWSERS + IKALVQSGIIAKADYEGNFKPDKPITRIEIIRMMVRASGKSDEAKRTNDNTGFADEAD + ISRADRGYVIIAKQNNIIAGYPDNTLRPKSEATRAEAFQLIDNQMRQNQKLGNEVPPI + DGSDDYGSGASSSPNSYPDAQIDFELSNTAHTDTEISISPITQYAQTLKWSLAKETED + GVQVPVDISQVIKGSLSQSGGKITFKESGKYTLTAITENYSGRETKCSKGITVYPVFI + PKFDLSEYSYIDETINITVNPEFNDVDIVWSVTKEGKDEALDTVIDGSLTNSGGSITF + KEKGTYALTATVTDTTGRSFTCSKEILVYPVISPEFDLPEYTHTDKVVNITIAPKLDG + LDVVWTATKDGKETAIDKIIDGSLTSTGGSITFKEKGSYAITATVTDATGRSFACGKG + ILVYPVPSLVFKYPATAYTDSNIIITQTAEMDGLIVEWLVESTSGPLDWNDYIDGTLD + NDGGTIQFKQEGTYQLTAKVTDKTGRVFLLNSESRIDVYPVSDINITLPAKAYPGETV + SVNVSGDNLNNLKCQWSIAADGGNPEEYESHVSGTLSDDGGTITFAKMGSYALTATFT + DKLGRAFTCSKVITIYPIPDMQISLPKLAYSGDAVSVATEESGLKGLNAVWSISIDGG + PEVPYRQYASDVLTSTGGEIRISTNKTIAVKLTASVTDENSRTFTFSSNTISIKPNII + CSFAAPSSVHTGESFSVTMEEVSGLEESNITWSLTKDGSLTDYTGSLSNNGGNITIND + VGGYTLTAAVTNSEGRIFSYSENIAVTNTAPNAPEGYATVTRTAKDQMLLVNITASAT + DPDGDDVIYEYEDQSEDGYYPLGSHTVKVRAKDSFGAVSSWTEINFKVVGSAPSTPVI + TRTPDGNSVAPNKPITITAASTDLDGDTITYVWEGRQAETSAYPLGRNTIRVKAVDST + GMESPWAAIVFFVADSNNGGGMTLSGPESVIVEKGIECATITEYTFSVPPVLGHSGSD + YGRVRGYNILTDTWDQLDYQSIANGITLSQKLTAGVYSQLEFYYYTNHDCMYNKSNIT + YSVSYYFE" + gene complement(3344002..3344586) + /locus_tag="Ccel_2784" + CDS complement(3344002..3344586) + /locus_tag="Ccel_2784" + /inference="similar to AA sequence:KEGG:HM1_0577" + /note="KEGG: hmo:HM1_0577 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77082.1" + /translation="MTERISFTQEDCSETGYAMSIAGRVIVLKQSSLPEKCQNSSHQL + YFCSGGNGSNSNPIGRSVFTVSLADGERIRWNRSDVLGILKPHLLPDSARLHLSQIRP + FGVVDQREAEPKYSGYSFLPDGRYSAGVWLADEKEAMEYIEMQKDYQHRVMICDRNDF + CVFEMLKGKVIYPSQEVIDKFLLGQQDGGMNIKL" + gene complement(3344583..3344876) + /locus_tag="Ccel_2785" + CDS complement(3344583..3344876) + /locus_tag="Ccel_2785" + /inference="protein motif:PFAM:PF04014" + /note="PFAM: SpoVT/AbrB domain protein; + KEGG: hmo:HM1_0576 stage V sporulation protein T, + putative" + /codon_start=1 + /transl_table=11 + /product="SpoVT/AbrB domain protein" + /protein_id="ACL77083.1" + /db_xref="InterPro:IPR007159" + /translation="MSKSKNIYKIIDNKGRIYIPKELRTAAEMEPGDIVKLGLQKGTV + TAKKVNLIEIGDQSPEAMEAYVRAALKEMSEETQINIAARILELVESRKGVQL" + gene complement(3344869..3345288) + /locus_tag="Ccel_2786" + CDS complement(3344869..3345288) + /locus_tag="Ccel_2786" + /inference="similar to AA sequence:KEGG:HM1_0575" + /note="KEGG: hmo:HM1_0575 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77084.1" + /translation="MKMIEIETRVNEIGEVTIPAELMCKMNFTSGDVVKLSFVSDSKV + GMENTFKEFVVTPDGIANILEDNQTELTLPLEILEKAEIPYNSDLEVICVKGAVVITE + ADLTDNLPRELCELFEDLGISKDTVSEVLRNGGQAHE" + gene complement(3345417..3346334) + /locus_tag="Ccel_2787" + CDS complement(3345417..3346334) + /locus_tag="Ccel_2787" + /inference="protein motif:PFAM:PF02086" + /note="PFAM: D12 class N6 adenine-specific DNA + methyltransferase; + KEGG: hmo:HM1_0574 d12 class n6 adenine-specific DNA + methyltransferase superfamily protein" + /codon_start=1 + /transl_table=11 + /product="D12 class N6 adenine-specific DNA + methyltransferase" + /protein_id="ACL77085.1" + /db_xref="InterPro:IPR002294" + /db_xref="InterPro:IPR012327" + /translation="MDSVISWVGGKRALRELIYRRMPRDIGRYIEVFGGGGWVLFGRR + PDKCMEVYNDFNSDLVNLFRCIKERPFALLKELNFLPLNSRDDFTALKMYLGKEEFTS + QYLQEEMELAQYYLSEPEFEEIKQILIENATMCDVKRAAAFFKLIRYSYGSGCTSFGC + QPFDIRKTFHLIWSGSRRLKNTLIENKDFEALILQYDRDNAFFYIDPPYFETEGHYAV + KFRKEDHVRLRDVVVGCHGKWMVSYNDCQYIRELYKGYYIEAVSRLNNLAQRYDKGCE + YSEVLITNYDTSICRAKPTQMGLIDLSIL" + gene complement(3346344..3346541) + /locus_tag="Ccel_2788" + CDS complement(3346344..3346541) + /locus_tag="Ccel_2788" + /inference="similar to AA sequence:KEGG:HM1_0573" + /note="KEGG: hmo:HM1_0573 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77086.1" + /translation="MDLSENIQKQPDSITVPRKIVYSVSLPKDTKQCRDCPYPGVGFI + CWTTKGSCMRTEIQKINEPRR" + gene complement(3348169..3349281) + /locus_tag="Ccel_2789" + CDS complement(3348169..3349281) + /locus_tag="Ccel_2789" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77087.1" + /translation="MRTKLFKKVITLALSSIILLSSMAYAAVGQPYDRLSMSFTGNRY + IYSNNPEKITTTLIAGTTGKNIVNRTVTPGQKYDVEYSHTNMTTIPLTVAVILKNNTN + VKANIAIYNNAAYQNEAYDVVGSKTEFDYWSIAKYSTKTIDPGKSCVLIRSNLNAADY + STGVGKVLFQSDVAVNCRVAYFKTGTSDDAAGNLSDLTAGDTVSTTTNECLNDGRTII + YDYASAINKAFYLNMDVAYTDSTGKVLDPHNKYNANEFQKPVWYLPSSREYSQGNWGI + NYNMRLDNAGGKTLYIIPDWTNIKYLGSNSYTIYDPYTSSWKNIKLYKSSLDYAVIKL + PNKSSMIFNFVLAGGDCGQEYFTFTAPTTGHAVPVN" + gene 3349531..3349932 + /locus_tag="Ccel_2790" + CDS 3349531..3349932 + /locus_tag="Ccel_2790" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: tpd:Teth39_0032 XRE family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77088.1" + /db_xref="InterPro:IPR001387" + /translation="MYILPERIKSLRNVKGQSQKEVAEALGKSREAISKYELGEREPD + PDVIVQFSQHFNVSSDYMLGITDHIENIAPGKRMPYSPELYAFEKYLNDQNFIPYLQL + AVRMKDSNIEINQFEKFINKVIRQEKKQKHT" + gene complement(3349983..3350129) + /locus_tag="Ccel_2791" + CDS complement(3349983..3350129) + /locus_tag="Ccel_2791" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77089.1" + /translation="MKSRIKFLLAPLSLIITQLALSGVCSACCSSLYQPKAPKHLTAS + RQHS" + gene complement(3350158..3350967) + /locus_tag="Ccel_2792" + CDS complement(3350158..3350967) + /locus_tag="Ccel_2792" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2161 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77090.1" + /translation="MVMNLYILLLVSLPEAFLNLIIALLITGRKENLKINTQNILKFT + AAIVLMLTSSWVIRPISPNILTSISLHTVAYSLIYMIVYRLKPIYALFGSSFFLLIIT + TTDMLYISYVITYIFKGMVNFQNAYHWYVLLSSPQRIVQVIVIAFLWKHEILLATRIN + YRFHKLFLASFLLLTFGEQLLYFVYLDLCDKLTLIYQIMFSVSMFVIVLVLNILLFKL + IYMVIGNLLQKSYKMYTDLEDDVGFALDKIRALLVNNQVDEAVKLIDYITE" + gene 3351178..3351504 + /locus_tag="Ccel_2793" + CDS 3351178..3351504 + /locus_tag="Ccel_2793" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: chy:CHY_1862 DNA-binding protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77091.1" + /db_xref="InterPro:IPR001387" + /translation="MDYKEIGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKK + MSLETLINISDCLHISLDYLIKGTPENNINTNKLQKLIDKCSKEEISLITDMLKSMLP + YLKKLK" + gene complement(3351775..3352244) + /locus_tag="Ccel_2794" + /pseudo + gene complement(3352433..3352927) + /locus_tag="Ccel_2795" + CDS complement(3352433..3352927) + /locus_tag="Ccel_2795" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77092.1" + /translation="MNYFFIVIVFIILSFGMAFLAVKKNFLIYTIIALVLFWGILGTV + GFRYFTNQQFRLSVDLKFRQVNQHKNLTDKNIPSLPLPESTVFYYRYSDKAATYCTTL + GKGEVTNYFKRISDKDTFMKDSSSTDEREKFRFNYKNTPFTLSIETSINPQGNYIYID + SNTN" + gene complement(3353039..3354250) + /locus_tag="Ccel_2796" + CDS complement(3353039..3354250) + /locus_tag="Ccel_2796" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mbu:Mbur_0532 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77093.1" + /translation="MKKLLILLLVIAFTISGLCVPVIASDDSLSGISQEEAGNIALWY + IANDIKDNTDSIWSKDTRISKISNLYDENDNVTAYCFELKNVNSDSDNGYIMVSATGD + NSLIQEFSYTGKPPYYSANVDNFDKVYYTAPMEYAVEKDKKLFSTDKKEVKRKDIKSK + MKHNKEKLKKNKNIINRVKNDDHLKINEWMCGYNGQITGESGYGGITDPYKYCNDRYG + TGWTLKSSKYLNVTPRLQADLEAAANNCTLSSITMVFDYHRTQGQAGIPSNISTLYSD + IRTIAKKYGYTASAGTDPTKADDIVTDLWVKYGHKTGRGNNDYILDWSTAQAEIDQNR + PFVFNIAFGYYSNHSICVTGYCIYKGSNWYNSDTEFFKVNDNWTKDNRYIDWDAWGTS + TLGSFTKIFPS" + gene complement(3354392..3354706) + /locus_tag="Ccel_2797" + CDS complement(3354392..3354706) + /locus_tag="Ccel_2797" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77094.1" + /translation="MVKDFFSLGKASVKKVISCLFFIGFIPVVYSSYSFGMFIYTANT + YNKVISEKNNILVTESANNWFIGLVGGIIAFVFYVILWKVICELLLLIFTYLENRINK + MK" + gene complement(3354923..3355555) + /locus_tag="Ccel_2798" + CDS complement(3354923..3355555) + /locus_tag="Ccel_2798" + /inference="protein motif:PFAM:PF04647" + /note="PFAM: Accessory gene regulator B; + KEGG: cth:Cthe_2358 accessory gene regulator B" + /codon_start=1 + /transl_table=11 + /product="Accessory gene regulator B" + /protein_id="ACL77095.1" + /db_xref="InterPro:IPR006741" + /translation="MRFINKWSYTCAKSLASVLEENHQKKAEYYFGFQVALGGIVKTA + LLVAVSMILGVLIPTLIVSICFALLRKVAGGYHMDTYGKCLLVSIALFVFAALIAKHT + YRYWSIALLVILITLTFTIGLYVLIRYAPRDTPNRLITDLQEIRKFKALSIAYICVWL + AVVTVLTILEMKMYTILLCFGVLQELFAITPIHMFFDKIKYGLAPKQKPC" + gene complement(3355617..3355776) + /locus_tag="Ccel_2799" + /pseudo + gene 3356066..3356172 + /locus_tag="Ccel_2800" + /pseudo + gene complement(3356311..3357087) + /locus_tag="Ccel_2801" + CDS complement(3356311..3357087) + /locus_tag="Ccel_2801" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; + KEGG: bsu:BSU01510 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL77096.1" + /db_xref="InterPro:IPR013216" + /translation="MKIDSYIKENEKVWDTRSENNDRWSLPVSSEMVEQAKRGNWTIG + LTPKKAIPSTWFPNELSKKKILCLASGGGQQGPILAATGADVTVFDNSSKQLEKDQFV + AKRDHLRIKTVQGNMQDLSMFEDESFDCIIHPWSNGYVDNVLPVWRECARVLKKKGLL + LAGFGNPIEYIFDLGKFEQGLFEVKHSIPYADIKHMDDENVRSIVESDGYIWGHTLEN + QIQGQIDAGFAIIGFYEDRGGSALDQYISTSIATKAIKVQ" + gene complement(3357767..3358268) + /locus_tag="Ccel_2802" + /pseudo + gene complement(3358477..3360060) + /locus_tag="Ccel_2803" + CDS complement(3358477..3360060) + /locus_tag="Ccel_2803" + /inference="protein motif:TFAM:TIGR01376" + /note="TIGRFAM: polymorphic outer membrane protein; + PFAM: Polymorphic membrane protein Chlamydia; + KEGG: msi:Msm_1188 adhesin-like protein" + /codon_start=1 + /transl_table=11 + /product="polymorphic outer membrane protein" + /protein_id="ACL77097.1" + /db_xref="InterPro:IPR003368" + /db_xref="InterPro:IPR006626" + /translation="MPDDLYDNIENEKEENSTITVTNSDDNGPGSLRQSVLNAKSGDT + IDFSSAILPAIIYLNGKGIVIDKSLTINGPAEGRLTISCSTTIFYIAIGITVNINNVY + LTKSNRAIKSGSATLHLTNCMFYDNTGNDYEGGAAINVGYRGFLSISSCKFFNNKSIS + GGAIEAPSLCEVKIKDSVFFNNSANSGGAIASSGDVYITDTMFINNSANDNGGALGND + GSITIRGSTFSNNKCTDSGGAIVNYAGRAIIENNTFFDNTASKGGAIWNMMGTINTTN + NTFSDNRANDGGALLNDGTAKIAGDKFVNNTAYVCGAIHNNSITNITDAMFNNNGGGM + YGGALGNSGNIAIQGSTFSSNKCTGSGGAVANISNIAIITNCTFSGNTAVYGGAIGNY + ASGIVNIINSTLSNNSADKSGGALVNDGKTLINNSMLISNSAAGDGGALANQGAASVM + SGTFTDNSARISGGAIVNYSSGTITGINIIFTDNCALKGRAIANFGINMVPVTNSTLS + GNGDSTIFGEIIITDSTVF" + gene complement(3360346..3361329) + /locus_tag="Ccel_2804" + CDS complement(3360346..3361329) + /locus_tag="Ccel_2804" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: LOC100051265; similar to + glycosyltransferase-like 1" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77098.1" + /translation="MLYFMGYTDNEGNWTGNYTRAMRNELNKRHIEYVEIPPYDWYTA + NPPIDYYNSINSNKDDVWFFGWAQTPAMEILKDKPGKKYGIVVGATANPFEPANLWGT + TDWCNERFRLDQYDTIFAVSDWCSRLLTKSYPELQGRVAVTGFPIDYSIYDPFKHIEK + VDNLVIFNQRLTIEKLHVVEVELARRLVAKGFKVQHLSGTSREELSKQSTTLAALLNI + MDNSGIEFIHNTVKETYHTNLAKASIAVTTSISDMLPNSMLEAIYLNLVPVAPRNLCF + PEFIHSDNLYTPYDLDEMVEVIMKRPVRKHPIMRYSLECVVDKYLKYMNLI" + gene complement(3361329..3362306) + /locus_tag="Ccel_2805" + CDS complement(3361329..3362306) + /locus_tag="Ccel_2805" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: sso:SSO1618 glycosyltransferase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77099.1" + /translation="MLYLILDPDNELGYHATYNTALRQYLHSHNIEFTEINIDKDYLS + QNNFDRINSIQSRSDDLWLFSYAQNPLINYMFLKPGKKYAHIHGLEASLYEPAVLHGY + QLNESIVLYYYDGLFVNSNWAYSIMKKSYPVAAAKTVVTGFPFDIKFAERFRNIEKDD + KTIVFNQRFDMDKLHILEVYISEKLIDLGYKVLHICSKNEYERIQWDRESKFLLKEAE + KMGVQVLITNTKDDYFEKLARAKYTITTSIADTLSICMLEAGALGSILVAPNIGPFSE + YINPKNLYMPYNEDQLIDIVQNCSNTSVDLEKYAPERVFEIYMKSMGVI" + gene complement(3362308..3363261) + /locus_tag="Ccel_2806" + CDS complement(3362308..3363261) + /locus_tag="Ccel_2806" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta + hydroxysteroid dehydrogenase/isomerase; polysaccharide + biosynthesis protein CapD; Male sterility domain; + KEGG: cac:CAC0794 nucleoside-diphosphate-sugar epimerase + (UDP-glucose 4-epimerase)" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL77100.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR008089" + /db_xref="InterPro:IPR013120" + /translation="MKYLITGGNGFIGSHLTLRLLIEGHKVTVLDNFFTSPKGRLSNT + GANVIEGSVNDENLINSLIENCDHVIHLASIVGVRLAMLYGIDGLKLSCQGTENILKH + ASRLNKKVLVTSSSAIYGKIVSSPVNEEADSLIGCSSKSSWLYSISKLAEEHMCLAYY + REHSTKVKICRLFNVIGPNQSKHYGMVVPNFISCALKNEPIQVYGDGTHTRTFSYVDD + IIDGIEIIIENGKDGEVYNIGGTEEISILELAKRIINLTNSSSAVEFVPFSKVFGDNF + EETRQRKPDISKLCNLGYNPKYSLDEALLKIISVIKQRGDI" + gene 3363410..3364696 + /locus_tag="Ccel_2807" + CDS 3363410..3364696 + /locus_tag="Ccel_2807" + /inference="protein motif:TFAM:TIGR03026" + /note="TIGRFAM: nucleotide sugar dehydrogenase; + PFAM: UDP-glucose/GDP-mannose dehydrogenase; + UDP-glucose/GDP-mannose dehydrogenase dimerisation; + UDP-glucose/GDP-mannose dehydrogenase; + KEGG: ckl:CKL_3169 polysaccharide biosynthesis protein" + /codon_start=1 + /transl_table=11 + /product="nucleotide sugar dehydrogenase" + /protein_id="ACL77101.1" + /db_xref="InterPro:IPR001732" + /db_xref="InterPro:IPR014026" + /db_xref="InterPro:IPR014027" + /db_xref="InterPro:IPR017476" + /translation="MSDDLKQKFNKQVGIIGLGYVGLPLAILCVIKGFNVIGFEKDNN + KLSLLHHGKSYISDISDLMVETAVKNNLLYPTQDFSLISKCDIVIVCVPTPLAEDKTP + NYSYLFDAMESIAHNMKQGQLVMTESTIVPTTSRNEIIPILQKKGFIAGKNFHFSFSP + ERIDPGNDKFKIDTIPKLVSGYTDECRELAADFYTQLGLKVHKVASLEVAEMAKILEN + SYRDVNIALANELAQVCKLSGISIWDVIEAAATKPFGFSAFYPGPGVGGHCIPKDCTF + YTYLADKYGTRAKLAECAREINNNMPHYIISRLETLLTNSGKCINGSNLLILGVTYKK + DVNDIRESPAIEIIKKLSDMGAHIEYHDPYIKTLDVHNIKFSSIQYEDILKSKADCIL + LAVGHSCYKGLDFSGVALLFNAANNSVGSSNNTEIL" + gene complement(3365305..3366123) + /locus_tag="Ccel_2808" + CDS complement(3365305..3366123) + /locus_tag="Ccel_2808" + /inference="protein motif:PFAM:PF01909" + /note="PFAM: DNA polymerase beta domain protein region; + KEGG: ckl:CKL_2614 streptomycin 3''-adenylyltransferase" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase beta domain protein region" + /protein_id="ACL77102.1" + /db_xref="InterPro:IPR002934" + /translation="MPRKFARKELAVENMNNKEIPKEAIQASKIIEELLDSILVGIYL + YGSAVMGGLRINSDVDILVVINRSLSERTRRDLTDRLMLISGKIGNTKDMRPLEVTVI + NQKDIIPWHFPPRYEFMYGEWLREQFEKGDIPEPTYDPDLAILLAQLRKNSINLLGPK + ATEVIEPVPMTDIRKAIKESLPGLITSIKGDERNVILTLARMWVTASTGEIRSKDLAA + EWAIPQLPYEHAILLDKARKAYLGGYIDKWKGMDSEVTELVNNMKKSIESSLNL" + gene complement(3366196..3367416) + /locus_tag="Ccel_2809" + CDS complement(3366196..3367416) + /locus_tag="Ccel_2809" + /inference="protein motif:PFAM:PF04229" + /note="PFAM: GCN5-related N-acetyltransferase; protein of + unknown function UPF0157; + KEGG: ckl:CKL_2615 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0157" + /protein_id="ACL77103.1" + /db_xref="InterPro:IPR000182" + /db_xref="InterPro:IPR007344" + /translation="MMLSENNSTPRSDEELQKNMVAELKPHNAPITLVEYDPSWSDLF + EQEANRIRSVLGNKALQIEHVGSTSVPGLCAKPIIDMLLVVKDSADELSYVPALESAG + YILRIREPEWFEHRLFKGPDTDINLHVFSSGTSEIDRMLRFRDWLRTNDADRDKYAQV + KRNLAKNKWRHVQHYADAKTSIIQKIMERASLNLENGIPEKNLFMMCKALNSNAISEL + SDEYHVRTCRRDELDIWKEMPFDDVKSAKEYNGFMTEYFNDVYGSKEDLFFQKCLFVC + DKNDTPIGTCFAWKAYEKISTIHWFKVRKNYEGSGIGRALLSIVMRSIKENDYPVFLH + TQPSSFRAIKLYSDFGFAFLTDPIIGYRKNDLEECLTILKEHMPQKDFEKLQFAEAPE + DFLKAVKSSKINQF" + gene complement(3367457..3368197) + /locus_tag="Ccel_2810" + CDS complement(3367457..3368197) + /locus_tag="Ccel_2810" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: UbiE/COQ5 methyltransferase; + Methyltransferase type 11; Methyltransferase type 12; + KEGG: ckl:CKL_2616 methyltransferase" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL77104.1" + /db_xref="InterPro:IPR004033" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MKENKYDDNIFFQKYSQMSRSQQGLAGAGEWETLRKLLPDFKDK + RVLDLGCGYGWHCIYAMEHGASSVVGVDISHKMLEVAKEKTHFPQVEYKCCAIEDVEF + PEESFDVILSSLAFHYVADYEILVKKIYRILKSGGKLVFTVEHPVFTAYGTQDWHYNE + KGEILHFPVDNYYYEGKRTAVFLGEKVTKYHRTLTTYLNTLLSNGFIINQIVEPQPPE + NMMDIPGMQDEMRRPMMLIVSANKKEKR" + gene complement(3368178..3369047) + /locus_tag="Ccel_2811" + CDS complement(3368178..3369047) + /locus_tag="Ccel_2811" + /inference="protein motif:PFAM:PF01909" + /note="PFAM: DNA polymerase beta domain protein region; + KEGG: ckl:CKL_2617 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DNA polymerase beta domain protein region" + /protein_id="ACL77105.1" + /db_xref="InterPro:IPR002934" + /translation="MVDNVIQIVTEKLSSLPCIGGIVLGGSRARGTHTEDSDIDIGIY + YNSESFDLTAINQIATELDDENRNDLVVPPGAWGDWINGGGWLVINGYHVDLILRDIK + RVEQIIKDTEQGIVTANYQTGHPHGYISAMYRGELAISKIQYAKNESLCELKNQAEIY + PGALKKNLINFFIFEAEFSLMFVKANAGAEDKYYIAGHVFRIISCLNQVLFACNNAYC + INEKKAIKLLETFEYKPEKYAERVNHIFEVLGLSLFECYDMTEKLYKEVKKIATEINN + FLNEGNSDERKQI" + gene complement(3369063..3370061) + /locus_tag="Ccel_2812" + CDS complement(3369063..3370061) + /locus_tag="Ccel_2812" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dde:Dde_0890 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77106.1" + /translation="MNINKMKDLSYDELRSLYREFLYSQNISKLTINTAYTDTFYLWR + KGSKDLFWNTVTATDFENEAKNSLIKALSENSTGNVKSLVNSYLSHLRRFRLLLASDG + AAERSTPKHENTANRTYTRKKRMDVDVPDPSIEQVEFYLAKWDGLENYHLQEDALNKL + FFELCPKNTDIIDVLLKASTLNDFYSTNIFSIYPVAKHICALDIDARLKAGDVTLVGD + IQYVPIGDTEKNFYSFATKYCSHHNPLDYPIYDSYVDEVLRYFRNRDSFSDFQDGDLK + DYVKFKGILIDFRAFYGLDKFSLKQIDQYVWQLGKDYFPKNYGKKKRGDKYFVFNR" + gene complement(3370096..3370608) + /locus_tag="Ccel_2813" + CDS complement(3370096..3370608) + /locus_tag="Ccel_2813" + /inference="similar to AA sequence:KEGG:Amet_3967" + /note="KEGG: amt:Amet_3967 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77107.1" + /translation="MSKSVTFTVDADVYEKFCIALNLTNETKDAAVESCMRWYIAKTF + EKASQAYNPKTVAKQNEDTNKDFYGKANQRIPVWAIKPNQYNHKIIRAYFKAVAATGR + ATINLMERLCSDENNPELYVPTFKNNYSQMKLDGPKSHGKVFEDDGETVTIWHEVEDT + LMKYKSSFCN" + gene complement(3370767..3372338) + /locus_tag="Ccel_2814" + CDS complement(3370767..3372338) + /locus_tag="Ccel_2814" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: ckl:CKL_2620 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77108.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MAVSRNVTVIPAIKRVGNNKNSESKPKIRVAAYCRVSTDSEEQA + SSYEIQIEHYTNYIKKNKEWELAGIFADDGITGTNTKKREEFNRMIEECMAGKIDLII + TKSISRFARNTLDCLKYIRQLKDKNIAVFFEKENINTMDSKGEVLLTIMASLAQQESQ + SLSQNVKLGIQYRYQQGEVQVNHKRFLGYTKDENKQLVIDPEGAEVVKRIYREYLEGA + SLLQIARGLEADGILTAAGKSKWRPETLKKILQNEKYIGDALLQKTYTIDFLSKRRVK + NNGIVPQYYVENSHEPIIPRELFMQVQEEMVRRANLRGGKGGKKRVYSSKYALSSIVY + CGQCGNIYRRVHWNNRGYKSIVWRCVSRLEEKGSECTAPTINEEILQTAVVKAINELL + ANKEPFLSTLQKNIAAILNEGNDNATDDIDSKLEELQQQLLIQAKSKNDYEDVADKIY + RLRELKQNALVESAEREGKRQRIAEMTDFLNEQSCELEEYDEQLVRWLIEKVTIHANR + VEVEFKAGISIDVKN" + gene complement(3372342..3372755) + /locus_tag="Ccel_2815" + CDS complement(3372342..3372755) + /locus_tag="Ccel_2815" + /inference="protein motif:PFAM:PF07508" + /note="PFAM: Recombinase; + KEGG: bca:BCE_0418 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Recombinase" + /protein_id="ACL77109.1" + /db_xref="InterPro:IPR011109" + /translation="MGHTPYGYRIEDGKAVVDDIAAEQVKELFSGYLSGLSLKGAAKK + AGIDCYHATASKMLQNKHYLGDEFYPPIIDEETFEKARVEKRKRAEKLGRIWEPKDEP + ETDYPVKFKAKPLVKKYDDLYKQAEYAYSLIESEV" + gene complement(3372756..3374321) + /locus_tag="Ccel_2816" + CDS complement(3372756..3374321) + /locus_tag="Ccel_2816" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: ckl:CKL_2622 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77110.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MKRITKIEGNMANSFIKQKTRVVAYCRVSTDSNEQLVSLQAQNA + HYETYIKANPEWEYAGLYYDEGISGTKKENRSDLLRMLSDCETGRIDLIITKSISRFA + RNTTDCLEMVRKLIDLGVHIYFEKENINTGSMESELMLSILSGLAESESISISENTKW + AIQRRFQNGTFKISYPPYGYQNIDGQMIVNLKQAEVVKYIFAEVLSGKGTQKVANDLN + QKGIPSKRGGRWTATTIRGILTNEKYTGDVILQKTYTDSHFNRHTNYGEENMYLVENH + HEAIISHEDFEAVDAILNQRAKEKGIEKRNSKYLNRYSFSGKIICSECGSTFKRRIHS + SGPRKYIAWCCSKHISNITECSMQFIRDEDIKTAFVTMMNKLIFGQKFILRPLLQGLR + NQNNAASFRRIEELETKIVNNMEQSQVLTGLMAKGYLEPALFNKEKNSLEAERERLLA + EKDLLTRSVNGNFAKVEEVDRLLKFATKSKMLTAYEDELFESYAEKIIVFSREEVGFE + LKCGITLKERLVN" + gene complement(3374383..3374619) + /locus_tag="Ccel_2817" + CDS complement(3374383..3374619) + /locus_tag="Ccel_2817" + /inference="similar to AA sequence:KEGG:CKL_2623" + /note="KEGG: ckl:CKL_2623 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77111.1" + /translation="MNQHEDKKVTKISDKVIDKSIESKRVSQEQLQREFDYIQAEKLL + RRMLEKGLITEIEFHKIDALNRQTFSPFLAEILP" + gene complement(3374814..3375515) + /locus_tag="Ccel_2818" + CDS complement(3374814..3375515) + /locus_tag="Ccel_2818" + /inference="protein motif:PFAM:PF01510" + /note="PFAM: N-acetylmuramoyl-L-alanine amidase family 2; + Sporulation domain protein; + KEGG: bca:BCE_0415 N-acetylmuramoyl-L-alanine amidase + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="N-acetylmuramyl-L-alanine amidase, negative + regulator of AmpC, AmpD" + /protein_id="ACL77112.1" + /db_xref="InterPro:IPR002502" + /db_xref="InterPro:IPR007730" + /translation="MNLRKLLLTNNACYKAGKTITPKGIMIHSTGANNPWLKRYVGPD + DGLLGKNQYNNHWNQDKPGGRQVCVHAFIGKLADGSIATYQTLPWNHRGWHAGGAANN + SHIGFEICEDGLTDASYFSAVYKEAVELCVYLCKLYGFSERDIICHSEGYKRGIASNH + ADVMHWFPKHGKSMDTFRADVKKLLSAENKPADTVNKKYYRVQIGAYSVKANAEAQLA + KAKKAGFTDAFIKYD" + gene complement(3375512..3375928) + /locus_tag="Ccel_2819" + CDS complement(3375512..3375928) + /locus_tag="Ccel_2819" + /inference="protein motif:TFAM:TIGR01593" + /note="TIGRFAM: toxin secretion/phage lysis holin; + PFAM: Holin toxin secretion/phage lysis; + KEGG: hmo:HM1_2868 holin, toxin secretion/phage lysis + family protein" + /codon_start=1 + /transl_table=11 + /product="toxin secretion/phage lysis holin" + /protein_id="ACL77113.1" + /db_xref="InterPro:IPR006480" + /db_xref="InterPro:IPR013838" + /translation="MREIWNWIQVTFAAIGGWLGYFLGGWDGFLYALLTFVVIDYITG + LMCAVLDKKLSSEVGFRGIFKKVLIFSLVAIGHIIDKNVIGDGSVIRTAVIFFYLSNE + GISILENAVHVGLPVPQKLKDILEQLHNRSDKEDYK" + gene complement(3376013..3378481) + /locus_tag="Ccel_2820" + CDS complement(3376013..3378481) + /locus_tag="Ccel_2820" + /inference="similar to AA sequence:KEGG:HM1_2974" + /note="KEGG: hmo:HM1_2974 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77114.1" + /translation="MKDYIKGKRCMVWSFMGNARMYQALNDYGDRLDTVGIFTFEVDI + TGTITETGTSVSSLTPYRIKWPHIKWLLTIMNHGTESIFTALRNNEGGAKSKFLSEIV + RIMNKYPWCAGVDIDLERGGGFENRTAANALFADIYTTVKNYDSSKLVNICLPGMTGV + QGSVGGENWCVYADLNDYCDTAAIMSYGMAWAGSAPGPVSPRSWLEGIYNYAVTAMSP + QKVYMGLPGYGWNWQIYDYPSNLGKAYRGTSNTYYAAKNWMTGVYNFTNDQPPQPFIP + IIAYWDDHDKVPWALPHVYDYMEGWDAVSREPPIIDETYNRRKYLTCYGKTQKSEFGT + IYVNRNGEPDSYTDGVVVGNGMITLSSSEGKSEYNFTIAQSGTYDVVVQLCFPFWDKN + GITIALDGTVVSYSENRLWWPYWRKTFWAELATNVNLLAGTHSIKIEGGVVGTQFYGF + RVCSNFSEYPSAGEATFCLSPRSFKDIDGNMAVPDKGFKLTTEVLRRKPDSALAWYED + FRDPIILPESYWQMLSGSWSVWQNPDDNGNRPYSQLEGSGQLAWKYDSFSDVHIRARI + AFPMGSSGRAGVFCGNVFCCINIDTQQVELYQGSTLLGSYAASYSKTPDADIRTNPNM + YLIEMRKRGNRVRVYSGNSNTLRFTANISSTGGYCGIQSDGQIKCELLRLGDAWTYEP + YEAFDVTMPDGSLMQYGRIARSGVTWDNRFHVFTLTADVEESSTRSEDISMDYDFYHS + NLLQIPCNADYTAKVIPRDINVWISRLFLGDADGFSILYYQDVDSLVYWSNEAAYRWD + LRGIAIWSLGQEDMRLWEALPKQI" + gene complement(3378478..3379047) + /locus_tag="Ccel_2821" + CDS complement(3378478..3379047) + /locus_tag="Ccel_2821" + /inference="similar to AA sequence:KEGG:HM1_2973" + /note="KEGG: hmo:HM1_2973 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77115.1" + /translation="MQESNFIRFAEVIKVKSEKRVVSITVRPLITNCTGSIYFTDLQL + QEGDKLTGYTPHTEAFLKYSPNPVRFHNGVVRSGDTIIIFNLGETSNGLDCYIYPLQA + MEAGSIQLSQGMGSHKVRFDSEAYAGDEFALKASTRECLRNGYPTPKHGFYQYTAATD + SKHQVKLQDRKSARVYFEYKEMLKGDLRP" + gene complement(3379057..3379260) + /locus_tag="Ccel_2822" + CDS complement(3379057..3379260) + /locus_tag="Ccel_2822" + /inference="similar to AA sequence:KEGG:HM1_2972" + /note="KEGG: hmo:HM1_2972 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77116.1" + /translation="MIDLAVFQQIARDATPKGYETLRSITIRLVVSNCTGEVYFTDLM + LQAGSIATGWVGHVCEIKWTNDG" + gene complement(3379270..3381789) + /locus_tag="Ccel_2823" + CDS complement(3379270..3381789) + /locus_tag="Ccel_2823" + /inference="protein motif:TFAM:TIGR01665" + /note="TIGRFAM: phage minor structural protein; + KEGG: hmo:HM1_2971 phage minor structural protein, + N-terminal" + /codon_start=1 + /transl_table=11 + /product="phage minor structural protein" + /protein_id="ACL77117.1" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR007119" + /translation="MAIKSILTSQSDFTGEFPVSENTLALWRFNESGPDSDVKLVDAS + GHGRHVAISGWSGTSASLPNGRYGRFFRQNIINPTSEKTYLIAKNDGTFFSNLGDKIA + VGGWINPTTYSVGQTFIPLFNTRQGPGQPILYLSLYQGRPRMMLYNSSGSLILDQSET + PSFNMVNGGWYFIAAIIEVNTKTSQFILCNRTDGTVWIAPKRTFTGTLNPSCTADIVI + GMHANQYYYAGGFDDWFIEVNSQLTIEDLERHFKQSILANGGDTSGAVDAITEPGVVT + LLKDTNNRYPEGGQLTTIAAECSLAGSGRVSVTSEYTAGVTSISSIETATSDDLQDWS + AWQVVGSNGELVSPNRNFIRYRITLSTTDPLVTPKLLDITLHDIPKAPYEKLGFARPV + VLDENGAWEAVLENAYDIIVTGEINGADTLEFKLPWNDSKRVHLDNEKQVQVAHDIYR + IRTLTDEKGADGTGVLTTVYAEAAFYDLTFSAEKQPREFNADLPSAPMSYALEGTGWS + LGVVDVTTKRTWQCQEKNALAILRMTQQIHGGDLVFDSRNRLVSLLRFSGSDSGALFA + YKKNLTSIKRVVDTRSLVTRLYAYGKDGMTFATINGGKEYVDNYEYSNEVRVSTLDLS + NFTNPYQMLEFTNMRLAEYSKPRVSYVLSAMDLSVLTGYEHERWSLGDIVTVDDRDLN + LTIKTRVVRRQYNLQEPWKTVLELSSKLRELGDTSSGILADQLDQSNLIGQEIKDMVP + FNHLRNSRADDGFAYWQNSGFEVDTEKGVTGTASFKAVGSATATKSMAQTVYPASRRN + YTISAQIGSDNLQKGPDGQVGIEVVFEFEDGTTETRFIDLY" + gene complement(3381795..3382568) + /locus_tag="Ccel_2824" + CDS complement(3381795..3382568) + /locus_tag="Ccel_2824" + /inference="protein motif:TFAM:TIGR01633" + /note="TIGRFAM: phage tail component; + KEGG: hmo:HM1_2970 phage tail protein" + /codon_start=1 + /transl_table=11 + /product="phage tail component" + /protein_id="ACL77118.1" + /db_xref="InterPro:IPR006520" + /translation="MGFTFNGISSQSMNIKARLTNWQASPSLRNSFVTIPGKPGVADF + GSDIAEKIITVHCNVYPQYKFSKLVSVMDSLADWLNPERGVQQLVLDDVPDRYFTARL + SETVDCDRLILSAGAFDLKFVCPDPHAYALTDETYTITAEGENTVTRLKGNADSEPVY + LIKGIIPSGTNTYVSIQTNNEEIRVIGPLYDGETLIIDTGKVTAKVVDTSGETLRNGL + PLMQELNFPVLRKGNNTVTITPVGADFTELKIQAKSRWR" + gene complement(3382584..3385040) + /locus_tag="Ccel_2825" + CDS complement(3382584..3385040) + /locus_tag="Ccel_2825" + /inference="similar to AA sequence:KEGG:BCE_0409" + /note="KEGG: bca:BCE_0409 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77119.1" + /translation="MADNFGLKIGIEGEKEFKNALRDINQSFKVLGSEMKLVSSEFDK + NDKSVQAITARNEVLNKAIEAQKDKISTLEAALKNASESFGENDRRTQNWAIQLNNAK + AQLNDMERELGDAADEADDLGEELEDTGNSADEAGSKFEKLGGVLKGIGVAMGTVAVA + AGAAAIKLGKEVVAQFGELEQNLGGSEAVFGQYAASIQKTGEEAYKNLGVSQSEYLAT + ANKMGALFQGSGIQQQRSLELTEKAMQRAADMASVMGIDMSSALEAVTGAAKGNFDMM + DNLGVAMNATNIEAYALAKGLDFTWNTATQAEKAEVAMQMFFENTEQYAGNFARESTE + TVTGSLGLLQAALGSFTAGLGNADADMTNLTQNLVDAFQSVVANIVPVLENIVAALPT + ATGAILSAVGDLLPMLLGTVTELFSQVLEAILNLLPELIPATVEAVMTIVGALIDNLP + LLINAAVELVTALVEGIGLALPQLIPATVLAVTQIVQGLTDNLPMILEAAFQLIMGLA + QGLIAAIPQLIAALPAIITALVDFIIGAIPQIIDAGIQLLVSLVEALPEIIAAIVAAI + PQIIDGLVTAILGSIPQIIDAGVNLLIALIQNLPIIITIVVAAIPKIITSLVNAIIGS + IPQIIQAGIQLLVSLIKNLPTIIVEVVKAVPQIITALVKGFTGSIGQMAHVGGNLIKG + LWQGISDAGAWLWGKISGFFGGVVDKIKNFFGIRSPSALFAGLGDNMAQGLGQGFEKT + MAQVGEDMQNAIPTDFDTPGINLSSSVNGSVGTGGFGGSLITIQQMIVRSEDDIRRIS + QELYNLMETGSRAQGRFNPA" + gene complement(3385059..3385238) + /locus_tag="Ccel_2826" + CDS complement(3385059..3385238) + /locus_tag="Ccel_2826" + /inference="similar to AA sequence:KEGG:HM1_2968" + /note="KEGG: hmo:HM1_2968 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77120.1" + /translation="MFTRLLYYGTVHLNRTEEETWLTPLGLLMDLWDCHRQFLGLANR + KRELFIEDIIPEGLN" + gene complement(3385250..3385633) + /locus_tag="Ccel_2827" + CDS complement(3385250..3385633) + /locus_tag="Ccel_2827" + /inference="similar to AA sequence:KEGG:HM1_2967" + /note="KEGG: hmo:HM1_2967 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77121.1" + /translation="MDNERSAMINIGGQEHELILTTKATKEIARRYGGLENLGEKLLK + SENFEMALDEIIWLITLLANQSILIYNLKNKEAPKDVLTEDEVELLTSPLELATYKSA + ITEAMFKGTKRNIESEDHPKNIKAE" + gene complement(3385636..3386235) + /locus_tag="Ccel_2828" + CDS complement(3385636..3386235) + /locus_tag="Ccel_2828" + /inference="protein motif:TFAM:TIGR01603" + /note="TIGRFAM: phage major tail protein, phi13 family; + KEGG: hmo:HM1_2966 phi13 family phage major tail protein" + /codon_start=1 + /transl_table=11 + /product="phage major tail protein, phi13 family" + /protein_id="ACL77122.1" + /db_xref="InterPro:IPR006490" + /translation="MATIGLDRLYYAPITEDESGDETYGTPVMLAKAISAELSIELAE + ATLYADDGAAEIIKEFRNGTLSLGVDDIGRKAAESLTGATTDDNGVLISASEDGGSPV + AIGFRAKKANGQYRYFWLYRVKFGVPSTNLATKGDSITFSTPTIEGTVSRRNKLDGNG + NHPWKAEVNADDEGVLPATISGWYTEVYEPVFAVSGGGE" + gene complement(3386238..3386582) + /locus_tag="Ccel_2829" + CDS complement(3386238..3386582) + /locus_tag="Ccel_2829" + /inference="similar to AA sequence:KEGG:HM1_2965" + /note="KEGG: hmo:HM1_2965 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77123.1" + /translation="MSILLELNRIVDGLGILVETGVFKDKAPDEYVVITPLADTFDVH + ADNRPQFEIQEARLSLFSKNNYQVRKNQLVRAFLDADFTVTDRRYIGHEDDTDYHHYA + IDVAKEYELQEV" + gene complement(3386579..3387010) + /locus_tag="Ccel_2830" + CDS complement(3386579..3387010) + /locus_tag="Ccel_2830" + /inference="protein motif:TFAM:TIGR01725" + /note="TIGRFAM: phage protein, HK97 gp10 family; + KEGG: hmo:HM1_2964 HK97 family phage protein, putative" + /codon_start=1 + /transl_table=11 + /product="phage protein, HK97 gp10 family" + /protein_id="ACL77124.1" + /db_xref="InterPro:IPR010064" + /translation="MAKVDVRMPEDFLLKVSKLAEQTDVIIPKVLEVGGEVVLAKVKD + NLRSVVGKGTKYPSKSTGELVSSLGVTSAKQDRKGNYNVKVGFSEPRSDGGSNAKIAN + IIEYGKHGQPAKPFLKPAKSKSRKQCVEAMTAKLDEEINSL" + gene complement(3387003..3387323) + /locus_tag="Ccel_2831" + CDS complement(3387003..3387323) + /locus_tag="Ccel_2831" + /inference="protein motif:TFAM:TIGR01563" + /note="TIGRFAM: phage head-tail adaptor; + PFAM: putative head-tail adaptor protein; + KEGG: tex:Teth514_1257 phage head-tail adaptor, putative" + /codon_start=1 + /transl_table=11 + /product="phage head-tail adaptor" + /protein_id="ACL77125.1" + /db_xref="InterPro:IPR006453" + /db_xref="InterPro:IPR013045" + /translation="MNTFIDIVSVENNKDSEGFGTTSDTIVASVRAYKEERHGNEKWA + NRAVFSEATALFCFRKIPDIHVTTKMVIVDSDGRYEITSVEDVKGRGMYIEVLAKKVV + ASNG" + gene complement(3387340..3387660) + /locus_tag="Ccel_2832" + CDS complement(3387340..3387660) + /locus_tag="Ccel_2832" + /inference="protein motif:TFAM:TIGR01560" + /note="TIGRFAM: uncharacterized phage protein (possible + DNA packaging); + KEGG: bca:BCE_0402 phage protein DNA packaging protein" + /codon_start=1 + /transl_table=11 + /product="uncharacterized phage protein" + /protein_id="ACL77126.1" + /db_xref="InterPro:IPR006450" + /translation="MAVADNLLPKVKANLILTHDQDDSLLIGYITAAVSYAQSYQHVS + EDYYETHAMPPTTEQAVIMLSSHFYESRDGSTAGFFADSIQAGQQVWNTVNLLLRIDR + EWGV" + gene complement(3387687..3387899) + /locus_tag="Ccel_2833" + CDS complement(3387687..3387899) + /locus_tag="Ccel_2833" + /inference="similar to AA sequence:KEGG:BCE_0401" + /note="KEGG: bca:BCE_0401 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77127.1" + /translation="MSYNAKNYTEQGGEKTVIGGVLEIKEGASVTGLPVLENQADSIA + TDVTGLVTDFNALLAKLKAAGLMESD" + gene complement(3387912..3389105) + /locus_tag="Ccel_2834" + CDS complement(3387912..3389105) + /locus_tag="Ccel_2834" + /inference="protein motif:TFAM:TIGR01554" + /note="TIGRFAM: phage major capsid protein, HK97 family; + PFAM: major capsid protein HK97; + KEGG: bca:BCE_0400 HK97 family phage major capsid protein" + /codon_start=1 + /transl_table=11 + /product="phage major capsid protein, HK97 family" + /protein_id="ACL77128.1" + /db_xref="InterPro:IPR006444" + /translation="MSKILELREKRAKAWDAAKAFLDSKRGGDGLLSAEDTTTYEKME + ADVVALGKEIERLERQASIDLELSKATSNPITNEPTRTGEEKTGLASAEYKKAFWNAM + RDNVSYEVRNALKIGTDSEGGFLVPDEFERTLVEALEEENIFRRLANVITTSSGDRKI + PVVASKGNASWIDEEGAIPESDDSFGQVSIGAYKLATMIKVSEELLNDSVFNLESYIT + REFARRIGNKEEEAFFVGDGTGKPTGILNATGGGQVGVTAASATAITLDEVLDLFYSL + KAPYRNKAVFVMNDATIKAIRKLKDGNGQYLWQPSIQAGTPDTILNRPLYTSSYVPTA + EAGAKTVVFGDFSYYWVADRQGRVFKRLNELYAVTGQVGFIATQRVDGKLILPEAVKV + LQQKA" + gene complement(3389125..3389814) + /locus_tag="Ccel_2835" + CDS complement(3389125..3389814) + /locus_tag="Ccel_2835" + /inference="protein motif:PFAM:PF00574" + /note="PFAM: peptidase S14 ClpP; + KEGG: bca:BCE_0399 ClpP protease family protein" + /codon_start=1 + /transl_table=11 + /product="peptidase S14 ClpP" + /protein_id="ACL77129.1" + /db_xref="InterPro:IPR001907" + /translation="MRKFWNWVRDSDEERTLYLNGVISEETWWGDEVTPKIFKDELLA + GTGDITVWINSPGGDVFAAAQIYNMLMEYTGKVTVKIDGLAASAASVIAMAGGDVYMS + PVSMLMIHNPSTIAIGDSEEMLRAKALLDEVKESIINAYELKTGLSRTKLSHLMDAES + WMNANKAIELGFADKIMFMESETPDLTDSLIFSRMAVTNSLISKLPKQPKQKTGTPIE + SLDKRLSLILH" + gene complement(3389815..3391059) + /locus_tag="Ccel_2836" + CDS complement(3389815..3391059) + /locus_tag="Ccel_2836" + /inference="protein motif:TFAM:TIGR01537" + /note="TIGRFAM: phage portal protein, HK97 family; + PFAM: portal protein; + KEGG: bca:BCE_0398 HK97 family phage portal protein" + /codon_start=1 + /transl_table=11 + /product="phage portal protein, HK97 family" + /protein_id="ACL77130.1" + /db_xref="InterPro:IPR006427" + /db_xref="InterPro:IPR006944" + /translation="MNLIKGLFRSRDKPQNRVGSAFSFLFGGTSSGKTVNERTAMQAT + AVYACVRILAEAIAGLPLHVYRYRSDGGKEKIPFHPLYYLLHDEPNPEMTSFVFRETL + MSHLLLWGNAYAQVVRNGRGQAVALYPLLPNKMEVSRATNGELVYTYYRDTDESGLNP + KGGYVTLRKDEVLHIPGLGFDGLIGYSPIAMAKNAIGMSLATEEYGAAFFANGANPGG + VLEHPGVIKDIQRVKDSWNSAYQGTGNAHKIAVLEEGMKFQAIGIPPEQAQFLETRKF + QINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVVRWEQSLQQSLILPS + EKTSLFIKFNLDGLLRGDYQSRMNGYATGRQNGWMSANDIRELEDMNRIPAEEGGDLY + LVNGNMTKLADAGAFAKTEGGQ" + gene complement(3391103..3392707) + /locus_tag="Ccel_2837" + CDS complement(3391103..3392707) + /locus_tag="Ccel_2837" + /inference="protein motif:PFAM:PF03354" + /note="PFAM: Terminase; + KEGG: bca:BCE_0397 phage terminase, large subunit, + putative" + /codon_start=1 + /transl_table=11 + /product="Terminase" + /protein_id="ACL77131.1" + /db_xref="InterPro:IPR005021" + /translation="MRKLKKYKPTAFIADGSYYDKDAADYAVAFIEALSHTKGLWAGK + PFELIDWQEQIIRDLFGILKPDGYRQFNTAYVEIPKKMGKSELAAAIALLLTCGDGEE + RAEVYGCAADRQQASIVFEVAADMVRMCPALNKRVKLLASTKRLVYLPTNSFYQVLSA + EAYSKHGFNIHGVVFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTQSICY + ETHQKAVDIIEGRKYDPTFYPVIYGAKEEDDWTDPKVWKKANPSLGITVGIDKVRAAC + ESAKQNPAEENSFRQLRLNQWVKQSVRWMPMAKWDACAFPVIPESLEGRVCYGGLDLS + STTDITAFVLVFPPEDETDKYIVLPYFWMPEDNIDLRVRRDHVQYDLWEKQGYILTTE + GNVVHYGYIERFIEELGEKYNIREIAFDRWGAVQMVQNLEGLGFTVVPFGQGFKDMSP + PTKELMKLTLEERIAHGGHPVLRWMMDNIFIKTDPAGNVKPDKEKSTEKIDGAVATIM + ALDRAIRCGSGNSGDSVYDERGLIVF" + gene complement(3392797..3392985) + /locus_tag="Ccel_2838" + CDS complement(3392797..3392985) + /locus_tag="Ccel_2838" + /inference="similar to AA sequence:KEGG:BCE_0396" + /note="KEGG: bca:BCE_0396 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77132.1" + /translation="MNEIIKEQILSIRESGVTNMFDANRVQYEANERGFYELVVYLID + HKTEYAHFILTGEVDEKK" + gene complement(3393009..3393236) + /locus_tag="Ccel_2839" + CDS complement(3393009..3393236) + /locus_tag="Ccel_2839" + /inference="similar to AA sequence:KEGG:Teth514_1247" + /note="KEGG: tex:Teth514_1247 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77133.1" + /translation="MNIIHPEMLKQLRSYYTPGTRVMLLKMNDPYTKLQPGSKGTVTS + VDDIGTIHVSWDSGVSLGVAFGEDLCKRIEE" + gene complement(3393233..3393925) + /locus_tag="Ccel_2840" + CDS complement(3393233..3393925) + /locus_tag="Ccel_2840" + /inference="similar to AA sequence:KEGG:BCE_0394" + /note="KEGG: bca:BCE_0394 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77134.1" + /db_xref="InterPro:IPR006172" + /translation="MKINYNVTGPKRKALVNAISQQLNAPVKYLGAPTFAYEVADYNV + NKNGVLSGPDKKELVDDLLGLHDFKAISEEFDAPPPKAEANETEESINLIIQMPRADF + TDTAIENLKGLVESKATLIKKAIDTDSIPIIVYEEFVAFPWFQGECSSEEVKAYTHFV + TALCEMAKKQTRVNSTEKSVENEKYAFRCFLLRLGFIGPEYKMERKILLSKLSGSSAF + KSGTAKQEVSEQ" + gene complement(3394039..3396198) + /locus_tag="Ccel_2841" + CDS complement(3394039..3396198) + /locus_tag="Ccel_2841" + /inference="protein motif:TFAM:TIGR00675" + /note="TIGRFAM: DNA-cytosine methyltransferase; + PFAM: C-5 cytosine-specific DNA methylase; + KEGG: bca:BCE_0393 DNA-cytosine methyltransferase" + /codon_start=1 + /transl_table=11 + /product="DNA-cytosine methyltransferase" + /protein_id="ACL77135.1" + /db_xref="InterPro:IPR001525" + /translation="MSKLTLGSLFDGSGGFPLGGLLCGIEPLWASEIEPFPIRVTTKR + IPQMKHYGDINKLNGAELPPVDIITFGSPCTDMSVAGKRAGLDGEQSVLFYEAIRIIK + EMRCKTNGQYPRYAVWENVPGAFSSNKGEDFKAVLETVISVKEPNASVPLPEKGRWPY + ADIYMGDGWSVAYRTIDAQYFGVPQRRRRIYLVADFADRSAGEILFESEGMPRNFTPS + GSPWQRTADNAKNCTGKTGDSITCLNDQGERVMSVSKDITATLRAEEHGHQPCVMQSS + GFCTEHSAKSRSVGYEEERSPTLRAVVVPGTVMSFEPGAVSRIGGHTDENLSGSLRAS + MGDNQTAVVIENYPTDSRVKLSEDNKVQTLTSRMGTGGGNVPLVMSTPKTLKIRSGCE + GGGKGALIQDDKSATLGCNNDQTVFVPTAYGICSDKSNSMQSSNPHSGIYEADTSRTI + DANGGNPGCNQGGIAVVALQGSMIGREDKNGPQGSGIDEDVSFTLNTADRHAVAYAMT + TGAYAQVEEDKAPTLLSRDYKDAPVVTQPCYGIDRAAFNQGRNALYKPTVDEEQQPTL + TAKGPGAVAHPASFYPQMKAESQCYRQDGTSNTIINGTNPGYQNGLVEPDYIVRRLTP + TECARLQGFPDDWCDDLGTENPKEDEISFWTQVWETHRKIIGKSKRPKTRNKIIKWLN + NPHSDAAEYKMWGNGVALPCVCFVLTGIVLSTQNTAD" + gene complement(3396191..3397432) + /locus_tag="Ccel_2842" + CDS complement(3396191..3397432) + /locus_tag="Ccel_2842" + /inference="protein motif:PFAM:PF01555" + /note="PFAM: DNA methylase N-4/N-6 domain protein; ParB + domain protein nuclease; + KEGG: bca:BCE_0392 DNA methylase, family protein" + /codon_start=1 + /transl_table=11 + /product="DNA methylase N-4/N-6 domain protein" + /protein_id="ACL77136.1" + /db_xref="InterPro:IPR001091" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR002295" + /db_xref="InterPro:IPR002941" + /db_xref="InterPro:IPR003115" + /translation="MLIEKIKTKQLIPADYNPRKDLKPGDPEYEKLKRSLEEFGYVEP + VIWNKTTGRVIGGHQRLKVLLSMGMDEIECVVVEMDEQKEKALNIALNKISGDWDKDK + LALLITDLDASDFDVSLTGFDPGELEDLFKDSLKDNIKEDDFDVDSELKKPAVSHLGD + VWILGQHRLVCGDSTKKDTFDVLMDGKAANLVVTDPPYNVNYEGTAGKIKNDNMANEA + FYDFLLAAFQNTEEAMAKDASIYVFHADTEGLNFRRAFSDAGFYLSGTCIWKKQSLVL + GRSPYQWQHEPVLFGWKKKGKHLWYSDRKQTTIWEFEKPKKNSDHPTMKPVALVAYPI + MNSSLSNCIVLDPFGGSGSTLIACEQTDRICYTIELDEKYCDVIVKRYIEQVGNSDGV + FLLRDGSKFRYCDLPEVNEDE" + gene complement(3397422..3398606) + /locus_tag="Ccel_2843" + CDS complement(3397422..3398606) + /locus_tag="Ccel_2843" + /inference="protein motif:PFAM:PF00438" + /note="PFAM: S-adenosylmethionine synthetase; + KEGG: ckl:CKL_2650 S-adenosylmethionine synthetase" + /codon_start=1 + /transl_table=11 + /product="S-adenosylmethionine synthetase" + /protein_id="ACL77137.1" + /db_xref="InterPro:IPR002133" + /translation="MRRYDVMSKRYLTAESVCAGHPDKLCDIIADSILEACLRKDKAS + RVACEVMATKGKIIVAGEIFCSEKVNIRDIVKNVLKDVGYNPLKFLIYVYVHNQSVDI + AAGVNTALEARNGINEQYGSIGAGDQGTMYGYATKETREMLPLPLVLSHRIVKRLDDC + RKGKLIKGIFPDGKAQVTVEYEDDTPVRIKTIVISVQHDKNKTLEELKAGILNNVLWQ + CFEDFPFDDETELLINPSGQFVLGGPAADTGLTGRKIMVDTYGGLASHGGGALCGKDP + TKVDRSGAYMARYIAKHIVWCGYAKKCEVSISYAIGKANPVAFTVNTLGTGTVSDEIL + TLAAQETFNLRPAAIIEKLRLRNVIYSDTAVYGHFNSCLFPWEDVNKYSEFRKAVEKY + VD" + gene complement(3398609..3399160) + /locus_tag="Ccel_2844" + CDS complement(3398609..3399160) + /locus_tag="Ccel_2844" + /inference="similar to AA sequence:KEGG:CKL_2651" + /note="KEGG: ckl:CKL_2651 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77138.1" + /translation="MAKDGTNRGGARIGSGQKKKPLADKIAEGNPGKRKLEVVEFKNT + ADLKGQEMPKPRAMLSAVQKDGKTLEASEIYEITWKWLEERGCAHLVLPQLLERYAMS + AARWIQCEEAVTEFGFLAKHPTTGNAIQSPYVAMSQSFMSQTNRLWMEIYQIVRENCA + TEYSGLNPQDDVMERLLSARRGK" + gene complement(3399272..3399631) + /locus_tag="Ccel_2845" + CDS complement(3399272..3399631) + /locus_tag="Ccel_2845" + /inference="protein motif:PFAM:PF01844" + /note="PFAM: HNH endonuclease; + SMART: HNH nuclease; + KEGG: bca:BCE_0389 HNH endonuclease domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="HNH endonuclease" + /protein_id="ACL77139.1" + /db_xref="InterPro:IPR002711" + /db_xref="InterPro:IPR003615" + /translation="MPKKPKRPCSYPGCPELTDKRFCEEHSKKEAARYEKYQRDPATR + KRYGRAWKRIRDRYIAAHPLCEECKRQEKLTPAAEVHHILPLSRGGTHDRSNLMALCT + PCHSAITARDGDRWGTQ" + gene complement(3399787..3400200) + /locus_tag="Ccel_2846" + CDS complement(3399787..3400200) + /locus_tag="Ccel_2846" + /inference="similar to AA sequence:KEGG:CKL_2654" + /note="KEGG: ckl:CKL_2654 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="putative RNA polymerase, sigma 28 subunit, + FliA/WhiG subfamily" + /protein_id="ACL77140.1" + /translation="MMTAKEFLKQAYRLNELINSDLEELQNLRDLSRSVSTPVLDEKV + SRTKSTDPPFEKYVIRIIDLEQQIQHEVERLIKLKSDIREAINQMENVDEKLLLRYRY + INFLNWEEICVNLNVSMRTVHRLHSSALQHLKVPK" + gene complement(3400197..3400418) + /locus_tag="Ccel_2847" + CDS complement(3400197..3400418) + /locus_tag="Ccel_2847" + /inference="similar to AA sequence:KEGG:BCE_0387" + /note="KEGG: bca:BCE_0387 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77141.1" + /translation="MMDAFEKLANAIILQAVKDYRFALKRLAKHPRNDSALYTKREVE + CFFHSGLFNVLTSLNPDMLIQQLQEEVVR" + gene complement(3400415..3401776) + /locus_tag="Ccel_2848" + CDS complement(3400415..3401776) + /locus_tag="Ccel_2848" + /inference="protein motif:PFAM:PF00176" + /note="PFAM: SNF2-related protein; + SMART: DEAD-like helicases; + KEGG: ckl:CKL_2656 phage-related DNA helicase" + /codon_start=1 + /transl_table=11 + /product="SNF2-related protein" + /protein_id="ACL77142.1" + /db_xref="InterPro:IPR000330" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MKYNPHKYQTYATNFILEHPIAAVFLEMGLGKSVITLTAIFDLC + LDSFEIGKVLVIAPLRVARDTWPAEINKWEHLKGLEFSVAIGTEQERLAALRKPASVY + LINRENVDWLVNKSGIPFDYDMVVIDELSSFKSYGAKRFKSLLKVRPRAKRIVGLTGT + PSSNGLMDLWAEFRILDMGKRLGRYITHYRNSFFTPDKRNQQIVFSYKPLPGAEDAIY + RLISDITISMKSIDFLKMPECVINEVPVYLNAKEQSVYDHFREEMVLEFGDEEIDAMN + AAVLSGKLLQMANGAIYDDDKKPHIIHDRKLDALEDLIEGANGKPVLIAYWYNHDLER + IKAKFNVREIKTSKDIKDWNNGDISVAVIHPASAGHGLNLQSGGSTLIWFGLTWSLEL + YQQTNARLWRQGQKETVVIHHIITKGTIDEDVMGALKRKEKTQTDLINAVKANLGKAR + DTV" + gene complement(3401757..3402038) + /locus_tag="Ccel_2849" + CDS complement(3401757..3402038) + /locus_tag="Ccel_2849" + /inference="protein motif:PFAM:PF08774" + /note="PFAM: VRR-NUC domain protein; + KEGG: ckl:CKL_2657 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="VRR-NUC domain protein" + /protein_id="ACL77143.1" + /db_xref="InterPro:IPR014883" + /translation="MLEKYIEKKLVAEVKKMGGIAAKFVSPGLDGMPDRLVLLPHGKM + AFVELKAPGKKPRLLQIRRIKQLQKLGFTCYVIDDVKQIGGVLGEIQSS" + gene complement(3402258..3404624) + /locus_tag="Ccel_2850" + CDS complement(3402258..3404624) + /locus_tag="Ccel_2850" + /inference="protein motif:PFAM:PF05272" + /note="PFAM: virulence-associated E family protein; + KEGG: bca:BCE_0384 virulence-associated protein E" + /codon_start=1 + /transl_table=11 + /product="virulence-associated E family protein" + /protein_id="ACL77144.1" + /db_xref="InterPro:IPR002129" + /db_xref="InterPro:IPR007936" + /translation="MKIAVGNSRMDRKWKNKDISWEDFCSRVKTTQRTKETVEEYRKL + KRGQQDDIKDVGGFVGGHLKEGRRKKGNVLCRSLLTLDMDYGRPDIWEQISMLFDFKC + CVYSTHKHTPENPRLRLIVPLAREISEEEYAAVGRMVAKEIGIDLFDDTTYEAHRLMY + WPSTSSNGEFVYEEQDGELLDPDVYLSKYQNWRDTSTWPVSSRQSEVINRSLKEQADP + LLKEGVVGTFCRAYSVREAIEKFLGTVYEASAMEGRYDYIPADSSAGVIIYDDKFAYS + HHATDPASGLLLNAFDLVRIHKFGSLDDRASTTTAPGRMPSFVAMCEFAIKDEAVKAE + FAKERKAQAEEEFSDEDWQTGLELDKQGRIKDTLDNIVLIIRHDEDLQHIAFNCHRDG + IDAKGGLPWEQIKCGWNDSDNALLKVYLSGKYGVYSPTKTKDAVLAVAAERAYHPVKE + YLDSLPKWDGISRVENLLIDYFGATDNSYTKATIRKTMVAAVARIYRPGTKFDSVLIL + NGPQGIGKSTFFAKLAGDWFSDSLTITDMKDKSGAEKLQGYWLLELGELAGMRKTDVE + IVKSFISRADDKYRASYGVNVESHPRQCVIVGSTNAESGFLRDITGNRRFWPVRISGN + SRKKAWQMTKEEVQQIWAEALVLYEKGEKLYLEGDDVTMATSEQADAMETDEREGLVR + TYLDTLLPDDWDTMSLYERRNFLGGSEFGGGTRVGTVKRTLVCNMEIWCECFGKEASM + LKPSDSYAIGAIMRKISEWNKYTGNKNGVVTFPVYGKQRAYSRVEEQR" + gene complement(3404621..3405055) + /locus_tag="Ccel_2851" + CDS complement(3404621..3405055) + /locus_tag="Ccel_2851" + /inference="similar to AA sequence:KEGG:BCE_0383" + /note="KEGG: bca:BCE_0383 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77145.1" + /translation="MGINKFNHEGYHDPTPHEALTNIMKKEKAEKKSAFKPLVYICSP + YSGDVEGNIKKARSFCRFALDQNCIPIAPHLMFPQFMDDENPEERELAIFMDIVLMGK + CSEVWVLGNTISSGMAREIEVAKKRRQTVRYFSPEHEEVESL" + gene complement(3405055..3405807) + /locus_tag="Ccel_2852" + CDS complement(3405055..3405807) + /locus_tag="Ccel_2852" + /inference="protein motif:PFAM:PF08346" + /note="PFAM: phage antirepressor protein; AntA/AntB + antirepressor domain protein; + KEGG: bca:BCE_0382 phage antirepressor protein, putative" + /codon_start=1 + /transl_table=11 + /product="AntA/AntB antirepressor domain protein" + /protein_id="ACL77146.1" + /db_xref="InterPro:IPR005039" + /db_xref="InterPro:IPR013557" + /translation="MDELVKINYENQRPTVLGRDLHEALEVKTAYKDWFPRMCEYGFE + EGSDFSSFLSESTGGRPSIDHQLTIDMAKELCMIQRTPKGKECRQYFLEIERRWNSPE + AIMARALQIANQQLTQVRKQNKVLEGTIAVQNQQIAEMKPKVSYYDVVLNCKDLISTS + AIAKDYGKSAIWMNRYLNKKGVQFKQGGIWLLYQKYAEKGYTSTKTHSYLGSNGQQHT + KVHTYWTQKGRLFIYELMKADGILPQIEMEGV" + gene complement(3406193..3406411) + /locus_tag="Ccel_2853" + CDS complement(3406193..3406411) + /locus_tag="Ccel_2853" + /inference="similar to AA sequence:KEGG:BCE_0380" + /note="KEGG: bca:BCE_0380 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77147.1" + /translation="MKEIISGLSLLFIIQGIGGLINHLTNGGKSWFLVNYIDAFQGFE + IVLDIVFIAVGGIIALATRKITSSKSNK" + gene complement(3406437..3407150) + /locus_tag="Ccel_2854" + CDS complement(3406437..3407150) + /locus_tag="Ccel_2854" + /inference="similar to AA sequence:KEGG:BCE_0379" + /note="KEGG: bca:BCE_0379 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77148.1" + /translation="MIETIEALMPSSSLDISSALMIISLCALIDILSPGVLTVTAYLL + LTQPNQLSSRLFVFLFITQLGYFITGLLLYFGGNSLLKRIEQLSQFDFINWFYILLGA + VLVLISFSKPKETTKKRLISFIPKNTTIKGMIILGIIVFLIEFVTALPYFYSIFLMNH + QTIETTPAILIIIGYNLVMVLPSLLLLGVNIIFKERLQQFLIKIRSKLNEAPISSLLV + ATGVIGAVFFNIGLRGILN" + gene 3407253..3407852 + /locus_tag="Ccel_2855" + CDS 3407253..3407852 + /locus_tag="Ccel_2855" + /inference="protein motif:PFAM:PF00440" + /note="PFAM: regulatory protein TetR; + KEGG: bca:BCE_0378 TetR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, TetR family" + /protein_id="ACL77149.1" + /db_xref="InterPro:IPR001647" + /translation="MPKIVDHDEKRKQIAEAAWNIIRKEGVEKASIRRVAAEAGMSSG + ALRHYFSTQDEMLLFIMNYYLEEGKKRSQNKEWSENPVQAVEEVLLELVPIDEEKKIE + TSVWWILALRSLTSDTIKDKKDEMTDGTYELANSMIEILALKGVLSDSMNAELEKSRL + TALIEGLSIHALLRPDVYSPEKVKEVIRYHLETLCNKIN" + gene complement(3408136..3410079) + /locus_tag="Ccel_2856" + CDS complement(3408136..3410079) + /locus_tag="Ccel_2856" + /inference="protein motif:PFAM:PF00476" + /note="PFAM: DNA-directed DNA polymerase; + KEGG: bca:BCE_0377 DNA polymerase I" + /codon_start=1 + /transl_table=11 + /product="DNA-directed DNA polymerase" + /protein_id="ACL77150.1" + /db_xref="InterPro:IPR001098" + /db_xref="InterPro:IPR002298" + /translation="MAKINSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDS + GEVQVVDLAGGEEIPDEIINALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKC + SMVWSAYMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEH + DMDKWERFKVYNIRDVESEMLIQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVK + QAVEMDEHSREKLIALMQDITNLENPNSVQQMKDWLADNGLETDSLGKKVVAEMLKTA + PEPLGTVLELRQQLAKSSVKKYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQ + NLPQNHMPDLEQARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFS + AIEARVIAWLAGEKWRLNVFQKGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELA + LGYGGAVGALKSMGALEMGIEEEELQPLVTAWRQSNPNITKLWWDVDRAVKTCVKQKT + PTATHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSESVTYEGVGGTKKWERIE + SYGPKFVENIVQAISRDILCHAMQTLKNCSIVAHVHDEIIIEADMGMSLSAICEQMAK + TPTWANGLLLSADGYECQFYQKD" + gene complement(3410067..3410594) + /locus_tag="Ccel_2857" + CDS complement(3410067..3410594) + /locus_tag="Ccel_2857" + /inference="protein motif:PFAM:PF01844" + /note="PFAM: HNH endonuclease; NUMOD4 domain protein; + KEGG: amt:Amet_4010 NUMOD4 domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="HNH endonuclease" + /protein_id="ACL77151.1" + /db_xref="InterPro:IPR002711" + /db_xref="InterPro:IPR010902" + /translation="MDIEVWRDIPGYEGEYQVSSEGRVKSLKRKVMSRNWYTSQPFLR + TVPERILKPGRYCKAGHQSVVLRRGSNGIPVHQLVMKAFVGEPPEGTEVLHINGNPQD + NRLSNLRYGTRTDNILDVYRQGKSWRKLSIEDVYDIRFRLICGFTGKEIADKYKVSPT + TISRIKVGRLYSWLK" + gene complement(3410668..3411216) + /locus_tag="Ccel_2858" + CDS complement(3410668..3411216) + /locus_tag="Ccel_2858" + /inference="similar to AA sequence:KEGG:BCE_0376" + /note="KEGG: bca:BCE_0376 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77152.1" + /translation="MNNQNRTKVVTSVNTRLSYFHGWEPVSINGGAEKYSVSVLIPKT + DKETINAINAAVDAAIEEGLAKFGGKKPNKAAIKLPLRDGDVERDDEAYKGHYFVNAN + STTPPQIVDKAVKPILDRNEVYSGCYARVSLNFYAFNSNGNKGVACGLGNIQKIRDGE + PLGGRTNAADDFTTIEDDDFLA" + gene complement(3411221..3412357) + /locus_tag="Ccel_2859" + CDS complement(3411221..3412357) + /locus_tag="Ccel_2859" + /inference="similar to AA sequence:KEGG:CKL_2663" + /note="KEGG: ckl:CKL_2663 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77153.1" + /translation="MSDHAVLSASGSHRWLNCLPSARLELEFENSESNAAAEGTAAHA + LCEHKLKKALHMRSKRPVSVYNSDEMEEHSDAYVEFVMEQLELAKQSCTDPLILIEQR + LDFSCYVPQGFGTGDCIIIADKKLHIIDFKYGMGVLVDAVDNPQMKLYALGALEIYDS + LYDIEEVSMTIFQPRRENVSTWTIPVKELKDWAENELRPKAKKAYKGEGDYLPGEWCT + FCRAAVKCRARAEEKLKLAQMEFKLPPLLTDSEIEEVLSKLSDLTKWANEIIAYATDA + AVNHGKEWHGFKVVEGRSVRKYKDEKAVAEAAKANGYKDIYRQNLITLTEMQKLMGKK + KFEQILGGLIHKPPGKPTLVPNSDKRPAMNISNVKNEFNEITEG" + gene complement(3412350..3412673) + /locus_tag="Ccel_2860" + CDS complement(3412350..3412673) + /locus_tag="Ccel_2860" + /inference="similar to AA sequence:KEGG:BCE_0374" + /note="KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, + putative" + /codon_start=1 + /transl_table=11 + /product="rRNA biogenesis protein rrp5, putative" + /protein_id="ACL77154.1" + /translation="MSKIKLLFDVVSDMRSLADSIQAVADAMAGSEPVEAKEPTTTVK + EPEPKKKEITLEEVRAKLAEKSQAGLTSQVREIIQKYGGSKLSEVDPKHYADMLKDAE + VLGNE" + gene complement(3412648..3412866) + /locus_tag="Ccel_2861" + CDS complement(3412648..3412866) + /locus_tag="Ccel_2861" + /inference="similar to AA sequence:KEGG:CKL_2665" + /note="KEGG: ckl:CKL_2665 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77155.1" + /translation="MKHNLKISVSKNPQTGGIVSCRNVTIRERFLRFLLGDKQKLTIL + VPGDTVQELAISEIKEGGLNHEQNQTTF" + gene complement(3412913..3413446) + /locus_tag="Ccel_2862" + CDS complement(3412913..3413446) + /locus_tag="Ccel_2862" + /inference="similar to AA sequence:KEGG:CKL_2666" + /note="KEGG: ckl:CKL_2666 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="putative RNA polymerase, sigma 28 subunit, + FliA/WhiG subfamily" + /protein_id="ACL77156.1" + /translation="MKIRIMYDNKPTYLEVPDEDCTVMIDMDYEDRLTCAEDKETVTR + RSPQEIMDERFNKPDYNNWHKFDRHRGMPKKPFRKDDESEDATDHMDYFPDNTDEVTR + EKQEEYEYLCEIIRKTLKEKQAELLIAIFLDGVSVTEYAEREGVSKSAISHRLDTAKK + NLRKVFPDSSTFPSCHG" + gene complement(3413677..3413823) + /locus_tag="Ccel_2863" + CDS complement(3413677..3413823) + /locus_tag="Ccel_2863" + /inference="similar to AA sequence:KEGG:CKL_2667" + /note="KEGG: ckl:CKL_2667 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77157.1" + /translation="MAFFIVLFRCFCWEMRHFEPEINGHEVSAKAVQFSPTIMIDEGK + VLRS" + gene complement(3413919..3415787) + /locus_tag="Ccel_2864" + CDS complement(3413919..3415787) + /locus_tag="Ccel_2864" + /inference="similar to AA sequence:KEGG:CKL_2668" + /note="KEGG: ckl:CKL_2668 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77158.1" + /db_xref="InterPro:IPR001387" + /translation="MAGNRSFKDYVADRFYNEIFSAIQTYATDNCEDLDLRLYRVQNI + GGIELSDVEVKFVSVNDLPDMKIEFDVAVEAEFEVRESDYHYDESENCRQWFMLECSG + DLDCNLDDFAISSITEYTSKNKQPKPMSDSLVPIIHKEQLESVATDFLRRHYPEALKT + PMAVEPQVLAEKMGLTVEMREITKDFSVFGQIYFHDCDAEFYNVDIDEMVQTRVSGRT + IIVDPKAYFLRNLGSVNNTIVHECVHWDQHRKAFELERLYNSSATRIKCQVVGGIKDN + TRDATDWMEWQANALAPKIQMPLAMFKTQAFKFIKQFRSELGTSELIDVMEPVIDALA + TFFSVSRTAAKIRMIDAGYEEAIGTFTYIDGRYVKPHRFKKGALERNQTFSIGAEDAA + IQSITNPEMAALVRDGSYIYVDSHFVLNHPKYITQDIFGQTVLSDYARTHMDECCLVF + ELSVKSGCKERYYTECFLNRDKTSNIDFDIKYCNGFEYAAPEKKAQLLAETIAEEMRI + YNELPNSYTSSLKIVREWKKVTYKELAEKILVNERTIRRIVNGEEPGSINSIVLICLG + LHLPPNISSHIIRNSPFSLNFNNNSHIWYNFALTHLYAKSMDEIRTFLQEHGAEPL" + gene 3415989..3416192 + /locus_tag="Ccel_2865" + CDS 3415989..3416192 + /locus_tag="Ccel_2865" + /inference="similar to AA sequence:KEGG:CKL_2669" + /note="KEGG: ckl:CKL_2669 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77159.1" + /db_xref="InterPro:IPR001387" + /translation="MSISYKKLWKLLIDRDMKKKDLREAAGISTASMAKLGKNENVNT + DILIKVCKALDCDIADIMEIVRK" + gene 3416249..3417448 + /locus_tag="Ccel_2866" + CDS 3416249..3417448 + /locus_tag="Ccel_2866" + /inference="protein motif:PFAM:PF09208" + /note="PFAM: Restriction endonuclease MspI; + KEGG: ckl:CKL_2670 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Restriction endonuclease MspI" + /protein_id="ACL77160.1" + /db_xref="InterPro:IPR015291" + /translation="MNKDNQIKNESGKQAKILVSEMLNNLKNELGINIEIKEGYSIGY + PNQEKQFKMDFLVQFTDFDNEQWLIKSTNSIRERIYGTEFFAQNIRLIDEKVKNIYVV + VPDSISSAEMKKKRNYSVKINGTTYTSFLTDVLTVNELRQKIVEKASQNIAQGLRANV + LGNDAETSIVNLLNDLKNKALWNDYQNAQQTIKSSTYKIYKEILEKIDLKEGFDKILE + VTATNDIPLLSNRGKPKTDVSVTIKTNTKELIRNISIKNTREKTVTIHEGSVSDLISA + LKLSESDPLSQALIHFEKVGSKKKLIAEHPNSDKILEENLKLYNRELIEFFIFGLHSP + LVNDKIQMVDLIIFTNKFAVWNRDDYIKHYIEEYSGKGQFGTPFKWTYPSKKRGQKIQ + IKGFSNN" + gene complement(3417503..3418753) + /locus_tag="Ccel_2867" + CDS complement(3417503..3418753) + /locus_tag="Ccel_2867" + /inference="protein motif:TFAM:TIGR00675" + /note="TIGRFAM: DNA-cytosine methyltransferase; + PFAM: C-5 cytosine-specific DNA methylase; + KEGG: ckl:CKL_2671 DNA methylase" + /codon_start=1 + /transl_table=11 + /product="DNA-cytosine methyltransferase" + /protein_id="ACL77161.1" + /db_xref="InterPro:IPR001525" + /translation="MRGGNRLGAGRKVIPESEKKKRKSVYITDKLYTRIMDTDIENCN + NFSQKCMALIELAMENLNKNNQEHSVKRNNILMVREPKSTYNKTNNNFEKQNSGIKLT + FIDLFAGIGGIRLGFEDKYTKCVFSSEWDKYAAQTYEANYGEKPHGDITKINENDIPD + HDVLLAGFPCQPFSNIGKREGFAHETQGTLFFDVLRILKKKQPKMFLLENVKGLLTND + NGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVGFHPDLGINDFSFPKGN + PDNKVPINAILEHNPTGYSISKRLQESYLFKKDDGKPQIVDFDSTIQVNTLVASYHKI + QRLTGTFVKDGETGLRLFSELELKRLMGFPDDFKVPVSRTQMYRQFGNSVAVPMIKAV + AKAMKERLLLAEMQDIEKIKTIAL" + gene complement(3419162..3420544) + /locus_tag="Ccel_2868" + CDS complement(3419162..3420544) + /locus_tag="Ccel_2868" + /inference="protein motif:TFAM:TIGR00479" + /note="TIGRFAM: RNA methyltransferase, TrmA family; + PFAM: deoxyribonuclease/rho motif-related TRAM; + (Uracil-5)-methyltransferase; + KEGG: cth:Cthe_1751 RNA methyltransferase" + /codon_start=1 + /transl_table=11 + /product="RNA methyltransferase, TrmA family" + /protein_id="ACL77162.1" + /db_xref="InterPro:IPR001566" + /db_xref="InterPro:IPR002792" + /db_xref="InterPro:IPR010280" + /translation="MKQPSHKIFLQKKIYKMDITGLTHEGQGVGKIEGFVVFVDGVLP + GENVDIKIVKQTKSYAVGRLVNINKPSENRIKPFCPVFDKCGGCAVQHMTYQAQLDFK + KDTVLQNIRRIGGIQDVVVNDTIGMENPYKYRNKVQYPVGWDNGEITIGFYETRSHNI + IDGSLCDIQPDESNKIRDIVRSFCKDAGIAIYDEKTGKGLLRHVMVRKGFRTNEIMVV + LVINGDKLLKSDDLVKKLLEEFPDIKSIILNVNTKNTNIILGNKNICIYGQMYITDFI + GSFKFEISPLSFFQVNPIQTEVLYEKALEYAGLSGNETVFDLYCGIGTISLYLSQRAK + RVIGVEVVPDAISDARRNAELNGITNVEFLVGEAEKVIPDMYSQGVKADVVVVDPPRK + GCDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKYLTEHGFEVKEVQPVDMFPWTGHVE + CVVLMSRVEK" + gene complement(3420733..3420939) + /locus_tag="Ccel_2869" + CDS complement(3420733..3420939) + /locus_tag="Ccel_2869" + /inference="similar to AA sequence:KEGG:Cthe_0894" + /note="KEGG: cth:Cthe_0894 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77163.1" + /translation="MNENEIELTTYDRLLRAWENSMELVRDYEMYSKRIEDEKIKQVF + KDFAEDEGMHASKLRNILLDYKKQ" + gene complement(3420955..3421506) + /locus_tag="Ccel_2870" + CDS complement(3420955..3421506) + /locus_tag="Ccel_2870" + /inference="protein motif:PFAM:PF03167" + /note="PFAM: Uracil-DNA glycosylase superfamily; + KEGG: sth:STH940 G/U mismatch-specific DNA glycosylase" + /codon_start=1 + /transl_table=11 + /product="Uracil-DNA glycosylase superfamily" + /protein_id="ACL77164.1" + /db_xref="InterPro:IPR005122" + /translation="MDNIYNEKPLPDILATGLKVVFIGYNPGLLSARNRHHYSHKSNR + FWRFLYESGLTPSRFEPEDDRKILEFGYGSTNIVDRPSKAANEIGTDEVVEGSANIYR + LLDNFKPRIACYVGIGVYRAYASSILRVPASGINVKPGLQSASILESISDFVCYSTSG + LNTVPFAEQRKCFENLKKLLDSI" + gene 3421657..3422211 + /locus_tag="Ccel_2871" + CDS 3421657..3422211 + /locus_tag="Ccel_2871" + /inference="similar to AA sequence:KEGG:CTC01970" + /note="KEGG: ctc:CTC01970 membrane associated protein" + /codon_start=1 + /transl_table=11 + /product="membrane associated protein" + /protein_id="ACL77165.1" + /translation="MSLLIISAIVTTLVSAIIVVLAVLIILLFIIPIKTDFVFDTENS + IMQLTALWLYPLLMAIVTFENGKPILNIHVFGKHVIKKIIRKKTGTGHGMDYLRATEP + EDIRIKAHYGFSNPFNTGITCGAVNMVSQLINISTFENEPDFLTDKDYVYLNVSAKIF + MGPAVMRIIRLRRLYRRELQWIQT" + gene 3422196..3422645 + /locus_tag="Ccel_2872" + CDS 3422196..3422645 + /locus_tag="Ccel_2872" + /inference="similar to AA sequence:KEGG:NT01CX_1826" + /note="KEGG: cno:NT01CX_1826 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77166.1" + /translation="MDTNMNQNVTTLFSNLEDFTQNEGLIGKPVTHGDKTFIPVVSVT + LGYGTGNSASKNHGTSTKEQAGGTTSGMANNMAGGALGLGAKLCTDAVIIVDKDNVSM + LQVGPTATSQLMDKIPQIISGLGSMGKQQQQGQQQPGQQSQSSQSQP" + gene 3422737..3423096 + /locus_tag="Ccel_2873" + CDS 3422737..3423096 + /locus_tag="Ccel_2873" + /inference="protein motif:PFAM:PF04020" + /note="PFAM: membrane protein of unknown function; + KEGG: cth:Cthe_2067 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="membrane protein of unknown function" + /protein_id="ACL77167.1" + /db_xref="InterPro:IPR007165" + /translation="MDKVENRQGFGLGHLVLRVVIGAVILAITAFLTPGFSISSWFSL + LLAAVVLAVLDWAVNKITGVNATPFGRGISGFILAAIIIYVIKFIVPGYNISLFAAVI + AALVYGVVDAIIPGRGM" + gene complement(3423278..3425593) + /locus_tag="Ccel_2874" + CDS complement(3423278..3425593) + /locus_tag="Ccel_2874" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: bwe:BcerKBAB4_1871 methyl-accepting chemotaxis + sensory transducer with cache sensor" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL77168.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /translation="MKNIKSTIIGAFCIVIAISLISSAISFVGYRKVIDSVNDIEANK + LNQDSVQILNRLSAERQQVLTDIVSSYNDDSKSFADIGNKIDSELKALGKAKISSADK + KTVEELDNANKKYISLFNDKINPNIKAFENKDIRDFLKGVQDSFNEMQSLVNELQKTT + AGPIEDRSARLMDDITELNRIIRLVDSDSSYIDNQFTEIKKLLADIEIYLDTAGSDVS + TVQDNDYNAKLEDLEQRISAAAAGTQTILDNARSTQGFDRVWNMKKVAGDLQLYNVLL + DIAVLTNRNNAVLLYSATEGKDMSSEFTKNKKDIDIKLADLLKKGLDSEKIDRLAALN + KSIDVTAQEIYKRVTVLEKGWIADGYKSMTQLNKAFLDNTEKLRVSFNNYFSDDIKSS + EKIKGAILGILILITLFSIIIGMLLALFLSNKIAKPIHYLSNILSKVEKGDLTVRAEI + AASNDIGELGKQVNNVLDGQQKIVEQFKDTGSEISSLKQRVRCLVDQNRETMEKISVT + KSADREGFVLDTESIISGVKTVTEQAQKAVGDSVRAVETAKLKEKTVEEAEMFISSVN + ETVRSIAASIGNLESSSGRIGEITNTITQIASQTNLLALNAAIEANRAGQQGKGFAVV + ADEIRKLSNLSNKSAAEIKEQIKDIQSSINTAVEKMNSGLLGVEDGAARINELKKGIT + EIIQSISSVTDTVKASADKAYSHYQTAREFVEVVDKMASSASDNCFPDYRNVDSIIQI + QAKTVSDLDEISMLLNDASADLFKISESVKV" + gene 3425823..3426671 + /locus_tag="Ccel_2875" + CDS 3425823..3426671 + /locus_tag="Ccel_2875" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: cth:Cthe_1757 peptidase M23B" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL77169.1" + /db_xref="InterPro:IPR016047" + /translation="MRKIFKPAWCLLIIMFLLLSVVYLLSAKSVRLEKANNVLGEQVQ + EMSKTLTEQNKALEANRELITIFQSDQTTFKTRLQEFANTYTQITGSYVRKPSRGTVM + KSANNTIEDIIKLNNLVKNLNTAFSSNNKLSQELEKTNTELEEFVAALPTFIPATGKI + TSPFGMRNHPITHIRTSHKGVDIDADIGDPIMASGSGKVIYAGYSSGYGRHIIIDHDN + GFKTIYGHSSKLLVNKGKTVKKGQKIALVGSTGRSTGPHLHFEIRISDIAVDPIKYIE + FKPSIR" + gene 3426895..3429480 + /locus_tag="Ccel_2876" + CDS 3426895..3429480 + /locus_tag="Ccel_2876" + /inference="protein motif:PFAM:PF00912" + /note="PFAM: glycosyl transferase family 51; + penicillin-binding protein transpeptidase; + KEGG: cth:Cthe_1760 1A family penicillin-binding protein" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase family 51" + /protein_id="ACL77170.1" + /db_xref="InterPro:IPR001264" + /db_xref="InterPro:IPR001460" + /translation="MKANEKAASGTGKPKKKKKKKPSSPAALFTLAVVKTVFVILISL + GCVVGGVLGGAVLGYIKTADPITPDQLEMTKVTFIYDKDGKEIAQVKGGENRILAEHS + EIPDNMRNAFIAIEDSRFISHDGVDKKRFIGAALSYIIKFGNADYGGSTITQQLVKNI + TGNTDSTVKRKVQEAWQAMDLEKKMSKDQILDNYMNRINTGLGCWGVQAAAKKFFNKD + VKDLSLAECASIAGVTKSPGTYDPTLSEKTKAANKERQKIILDEMLRQGYIKQNEHDE + AVAEPLKIYKGTSEGDKKANNVQSYFEDYVLTQVKSDLMKKYNLSSNNATIKLYNGGL + KIYTTQDSNVQKIMTEEFTNPKNFPANDKISNPDMQAQAAMLIIDPSTGQIRGMYGAY + GEKKANFTLNRATDMKRQPGSSFKPVAVYGPALDLGVITAATVIDDVPVYLDKDHPNT + PYPRNAETGVYEGLLTIRRAVQKSQNVVAAQVWMNLLGAQNSINYLKKVNIDRPKEGY + VSMALGGLNEGVNPLLMAAAYVPFDNKGVYLEPIAYTKVTDDKGNIILDKKADQKRDI + AYKETTAFLMTSMMRDVVTSGTAAVTGGLGRGGLGTVKNSAGKVIPTAGKTGTTNDTY + DKWFVGYSPYYVGATWYGYNYNKSLKGKEVYQALSLWNNVMNKVHAKLEPKDFPQPQG + LVKKSICIYSGKLVGPNCSGDPRGNATRTEYFAKGTEPTETCDVHVLAKVDISSKDIH + GRPLLANPFCPPNLVKEKVFIKRPVPYLPKSPLKGSMSATIKDWIYQLTEDEYCTKHT + GGGSNISPPNNTAATSPNTGNTSGSGSTKPGDGSLPNMPSGSTGGIPPSNSTDDNQNI + EDIIP" + gene complement(3429533..3430351) + /locus_tag="Ccel_2877" + CDS complement(3429533..3430351) + /locus_tag="Ccel_2877" + /inference="protein motif:TFAM:TIGR01027" + /note="TIGRFAM: glutamate 5-kinase; + PFAM: aspartate/glutamate/uridylate kinase; + KEGG: cpf:CPF_2904 gamma-glutamyl kinase" + /codon_start=1 + /transl_table=11 + /product="glutamate 5-kinase" + /protein_id="ACL77171.1" + /db_xref="InterPro:IPR001048" + /db_xref="InterPro:IPR001057" + /db_xref="InterPro:IPR005715" + /translation="MCFKRQRLQDAQRIVIKVGTSTLTYETGKINFNCIDKLARIISD + LSNQGKEVILVTSGAIGVGVDKLKLSERPKTIREKQAVAAVGQCELMHMYSKFFSEYG + HIVAQILLTRDIMGDEKCRKNVVNTFETLLEKGIVPIVNENDSVSTVELKVGQKDTFS + ENDTLSAIVSKLIEADLLIILSDIDGFYDSDPRKNPDSRMLSVIDKITPEIEDCAEGA + GTKRGTGGMVTKLSAAKIATGAGVDVVLTNGSHPEAILDILSGEQVGTLFIGSK" + gene complement(3430435..3431127) + /locus_tag="Ccel_2878" + CDS complement(3430435..3431127) + /locus_tag="Ccel_2878" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dsy:DSY1039 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77172.1" + /translation="MTNNFLNRDNWQVYFRRILLMVLIPMAQGIYFLLNVTTKNAHDV + TIFLDSFIPFNEWFVIPYVFWYLYTFGVLLIMAYFDENTYYKLLFSILIGMFVCFTIY + YIYPTTVPRPEVTPDNLLKKAVLIIYSNDKPYNCFPSIHMLDTILITMFTVRYCKGLL + IKFSSIAICIAIYMSTWFIKQHSILDAIASTVLGITLFVTFENRYVFGKLEQFINAFS + VRGKSESYPEDV" + gene complement(3431338..3433422) + /locus_tag="Ccel_2879" + CDS complement(3431338..3433422) + /locus_tag="Ccel_2879" + /inference="protein motif:TFAM:TIGR00484" + /note="TIGRFAM: translation elongation factor G; small + GTP-binding protein; + PFAM: elongation factor G domain protein; protein + synthesis factor GTP-binding; elongation factor Tu domain + 2 protein; elongation factor G domain IV; + KEGG: cth:Cthe_1794 elongation factor G" + /codon_start=1 + /transl_table=11 + /product="translation elongation factor G" + /protein_id="ACL77173.1" + /db_xref="InterPro:IPR000640" + /db_xref="InterPro:IPR000795" + /db_xref="InterPro:IPR004161" + /db_xref="InterPro:IPR004540" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR005517" + /translation="MKDYSVQKLRNICLLAHGGGGKTTLAEAMLFNTGVLDRLGKVVD + GTTTCDFDPEEIKRKISISTSLAPFEWLDHKINVIDTPGYFDFVGEVMQGIRAAEGAV + IVVSAKSGVSVGTEKSWAYAKENGAARIFFINKMDEENANFNAAYDEMLNTFGNSVIP + FQFPIYEDDKYVGYVDIINMNAKKFQNDKLIEIDIPSDLTDRISQIKNSLNELIAESD + EELMEKFFSGEEFTAEEMQKGIKLGMAEGTITPLFCGSAYRNIGVKELMDAIVAFMPS + PEAVKVKAKKAGKDEYVEIKPDAAEPMAALVFKTIADPFVGKISMFRVYSGTLKADSS + VFNSTTERLEKIGQIFVMRGKKQIPTDKLIAGDIGGVAKLAGTNTNDTLCDQANKVIL + DKIVFPQPSISMAVEPKAKGDEEKISSGLHKLQDEDPTFKVSISTETHQTLILGVGEQ + HLDVIVSKLKAKFGVMVNLVNPKIPYRETVKKKVKVEGKHKKQSGGHGQYGHVWIEFE + HGDTEDLTFQEKIFGGSVPKSYHPAVEKGLREAIVHGVLAGYPVVNLKATLVDGSYHD + VDSSEMAFKIAARLAYKKGLPLASPVLLEPIVHVEVYVPESFMGDIIGDLNKRRGRIL + GMNPLDDGQQQVEAEVPQSEMFKYATDLRSMTQGRGYFKLWFERYEEAPAIVANKVIE + EAKKNMIEENEE" + gene 3433865..3434890 + /locus_tag="Ccel_2880" + CDS 3433865..3434890 + /locus_tag="Ccel_2880" + /inference="protein motif:TFAM:TIGR01361" + /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate + aldolase; + PFAM: DAHP synthetase I/KDSA; + KEGG: cth:Cthe_1795 + 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase" + /codon_start=1 + /transl_table=11 + /product="phospho-2-dehydro-3-deoxyheptonate aldolase" + /protein_id="ACL77174.1" + /db_xref="InterPro:IPR006218" + /db_xref="InterPro:IPR006268" + /translation="MIIVMNPKSNQMQIDDVINVLKNSGLGVHVSQGTERTIIGIIGD + KTVLRDIPLEIMPGVEKLVPIVESFKLAGKTFRPEPSVVDVNGVKIGGKELVIMAGPC + AVESREQVIEAAQAVKRSGAQFLRGGAFKPRTSPYAFQGLEEEGLKLLKEAKDATGLQ + IITEVTSDKAVETSIPYVDMFQIGARNVQNFQLLKEVGKSMKPVLLKRGSATTIDEWL + NAAEYIMSEGNYSVVLCERGIRTFETATRNTLDLSAVPVVKNMSHLPIIVDPSHAAGK + SRYVIPLSRAAIAAGADGLIVEVHPNPMCALSDAAQQLKPSEFDSLCKDISKLAPILE + REFNYGC" + gene 3434880..3435980 + /locus_tag="Ccel_2881" + CDS 3434880..3435980 + /locus_tag="Ccel_2881" + /inference="protein motif:PFAM:PF02153" + /note="PFAM: amino acid-binding ACT domain protein; + Prephenate dehydrogenase; + KEGG: cth:Cthe_1796 prephenate dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="Prephenate dehydrogenase" + /protein_id="ACL77175.1" + /db_xref="InterPro:IPR002912" + /db_xref="InterPro:IPR003099" + /translation="MDVSSISIIGLGLIGGSLAKAFRHEYKNLKIYAVDNCTESLRLA + EREGVLDKGFTNCCEEIWNSDVIFICTPVSKTIEYVNELSHKLKKGSILTDVASTKGD + LFTYIDGLDNPPLFVGGHPMAGTEKSGYQNSFAHMFENAYYVLTPTKGSSEEVIKTLK + ELLRGIGAIPIVVSSWEHDTVTGCISHVPHIIASALVTLAKNTENSQGLVKLLAAGGF + KDITRIASSNPSMWKDVVISNGPVIVKLLEDYKHIVDDMINNINSGKNDEIHSFFDNA + KTFRDGFSNIATGLLPKNFELIVDVTDEPGIIGRIATLLGNSGINIKNINVSNSREYE + QGCLRITLSDQTNTDKAFEILKESSYMVFRKD" + gene complement(3436029..3436667) + /locus_tag="Ccel_2882" + CDS complement(3436029..3436667) + /locus_tag="Ccel_2882" + /inference="protein motif:PFAM:PF06971" + /note="PFAM: CoA-binding domain protein; Rex DNA-binding + domain protein; + KEGG: cth:Cthe_1798 redox-sensing transcriptional + repressor REX" + /codon_start=1 + /transl_table=11 + /product="Rex DNA-binding domain protein" + /protein_id="ACL77176.1" + /db_xref="InterPro:IPR003781" + /db_xref="InterPro:IPR009718" + /translation="MASKKISMAVIKRLPRYHRYLNYLLELGIKRVSSKELSSRMGIT + ASQIRQDLNCFGGFGQQGYGYNVESLYNEIGNILGINKTFYCIIIGAGNMGQALSNYG + NFIKRGFEVIGIFDVNPEVVGKKLKNLEVMNLDSLEEFILHNRVDIAMLCVPYRETAT + VADRVARLGVKGLWNFSPMDLKIPYDVIVENVHLSDSLMVLGYKLNDKFERE" + gene 3436909..3439146 + /locus_tag="Ccel_2883" + CDS 3436909..3439146 + /locus_tag="Ccel_2883" + /inference="protein motif:PFAM:PF04230" + /note="PFAM: glycosyl transferase group 1; polysaccharide + pyruvyl transferase; + KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase" + /codon_start=1 + /transl_table=11 + /product="polysaccharide pyruvyl transferase" + /protein_id="ACL77177.1" + /db_xref="InterPro:IPR001296" + /db_xref="InterPro:IPR007345" + /translation="MKVLHLIGGGDVGGAKVHVLSLVKELTARIDVTLLSLRPGAFAD + EARAMGIDVKVIKSSNIIKDIRHAIGFVKNNNFDIIHSHGAKANIFAYAIKKACNIPV + VTTMHSDYKLDYLQSLPKRLSIGLFNSGVLHSLDYYIVVTSAFRKMLIERGFDTNSIY + TILNGIDFDKKLKDYSREEFALKYGIQLDKNDILVGIAARLTPVKGISTLLEAAKLVV + EKNPKVKFLIGGDGEDYKSLTARCHQLGLENNVFFLGWLNDPYELMSIIDISVLTSIS + EGFPYSILEGARFSKATVSSRVGGIPDLIDSSENGYLFEPLDYSTLAEYLLELSLDHE + KRKEFGRRIYEKAYKNFSLDAMCKTQLAIYSQIQKNILNEAKGKKYDVIVSGYYGFGN + IGDDAMLRSIVDNLKEQRPGISILALSRNPVETARNYGVSAINRKNVFKVYWSMKKAK + LFIYGGGNIIQDSTSSRSLMFYLGTAWLAKKLKLKIMFYANGIGPINKPRNIEHSRKI + LNMADVITVRERFSLNELKKMGITGPKIALTADAAFAVNINQAELNDSRNFAGLSLDK + SYAGFSVRRCPGSEEHQHVKYEQAIAEAADYVFTKYGLEPVFIPMEYDVDICTIKNII + SKMKTKNHTISNNRTILETFSVIHKMDIMVSMRLHALIFAAYLKIPFIGISYQPKVDG + FLEYINQPSAGNVKEISFERLRSKIDNVLQNREPIKAVLESSVENLICKARENSGYAI + ELISE" + gene complement(3439328..3441232) + /locus_tag="Ccel_2884" + CDS complement(3439328..3441232) + /locus_tag="Ccel_2884" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cth:Cthe_1799 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77178.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MIVLNCNNVDFSYGTETILNNVSFSLQENDKVGLVGVNGAGKST + LFKLIIGELRQENGEIFISKDLNVGYLKQNSALNSENTLWDELRDVFRELVDMEKSIS + RVEKEISSTKEQDKLESLMKEYSRLTERFSYLGGFEYNSRIRGVLRGLGFEEHEFEYK + ISILSGGQKTRLALAKVLLEEPDILMLDEPTNHLDISAVEWLEDYLKSYKKCLLIISH + DRYFLDSVTSRTIEIENCTSTVYNCNYSNYVKQKAVNREIQEKHYTQQQKEIARQEAY + IEQQRRWNRERNIIAAESRQKALDRMEKIEKPSELPSNIRIKFRQTLSSGNDVLDVEG + VSKAFGNKEIFKDINFKIRKAEKVFLLGPNGCGKSTLLKILAGRLQATSGRYSYGAKV + NLGYYDQEMSDLNENNTVLDEVWSVDQKLIQSEVRTALGAFLFTGEDVFKKISVLSGG + EKSRVAMLKLIFSDANFIILDEPTNHLDINSREILEDALSDYEGTLLVVSHDRYFIDK + LATRIIDIGTTPVVDCFGNYTYFTEHHKKNAATVSKEQPIISEAKQSHMATKEERSRI + RKLEKQLSDTEKAIEKTEARLKEIEEEMVRVATDHQKLIELSEEQQQAQRKLEELYEV + WAEVTEQLEA" + gene complement(3441391..3442389) + /locus_tag="Ccel_2885" + CDS complement(3441391..3442389) + /locus_tag="Ccel_2885" + /inference="protein motif:PFAM:PF08541" + /note="PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] + synthase III domain protein; + 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; + KEGG: cno:NT01CX_0098 3-oxoacyl-(acyl-carrier-protein) + synthase III, putative" + /codon_start=1 + /transl_table=11 + /product="3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase + III domain protein" + /protein_id="ACL77179.1" + /db_xref="InterPro:IPR000209" + /db_xref="InterPro:IPR013747" + /db_xref="InterPro:IPR013751" + /translation="MFFNLKIVGVGTYHPKNEIDNRYFVEHFKKMNKDPRPLLKHLGR + ERRFKAKKFGSENSVTMALEASKKAIADANIEVSDIDMIVFASDFPEYVSPSNALMIS + SKLNSRANIVFDMNSNCISMISALDIIDSYIKNKNINNVLLVSSCMITPFAREDDIIV + YPSTADASAAVVLQKIPDSDRSGVIDSGFYTDCSYNWTIKNPACGFSRITDNSVDTNM + KMMEWNQFDFSFLSDNWCKLIYNLLKKNSLTPEDVSLYLFSQFSKADIMATIEKLNVV + EERIIYVGNKYGYTGPTSPILALNEAKKTNKIVDGSYAILCSVGSGYTMGALLYKF" + gene 3442650..3444134 + /locus_tag="Ccel_2886" + CDS 3442650..3444134 + /locus_tag="Ccel_2886" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: cbt:CLH_3030 methyl-accepting chemotaxis protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL77180.1" + /db_xref="InterPro:IPR004089" + /translation="MNMLSSLVEEQLHQKNKIVLLCLLASISLRVTVDSIFKLPLNDI + LLLAIVGYALCAIGSVFSFKKLYPKAIMYYFTITMGIISFIMIVSNPSLTTYLTVFLA + IVIVSIYSDIRPVIVCSIIGCFLTTYSFFNYKPQIFEKNNYIDLVFFNMYIFVCAFVL + FFLSYLTKKLYVKLESTAVNAISSKEKAEGLYNEIKATSQSLAKISADIKDSIISTQE + ISDGIGQAITIVAEEAQMEVTSIHKIKELFDNGKNKMVLSMEASNNMDSAVKSAVSNI + ASGSDYVDNLSKEMKEALNTMTLVEKLATDLIGKNKIINNILTSVNNISKQTNLLSLN + ASIEAARAGDAGKGFSIVAQDVRRLAEESNILTHQIESILKEMEQNALDVSKEITKEK + IYINNSNSITDATKDIFNKIKSEIHCIEEKTNNIKETSSNLYQSFELTDEEVNAISDN + TEKNAATAQEVTACISEQNSRMNIIEENYIKLNALIDELNNFNG" + gene complement(3444203..3445201) + /locus_tag="Ccel_2887" + CDS complement(3444203..3445201) + /locus_tag="Ccel_2887" + /inference="protein motif:PFAM:PF08541" + /note="PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] + synthase III domain protein; + 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; + KEGG: cno:NT01CX_0098 3-oxoacyl-(acyl-carrier-protein) + synthase III, putative" + /codon_start=1 + /transl_table=11 + /product="3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase + III domain protein" + /protein_id="ACL77181.1" + /db_xref="InterPro:IPR013747" + /db_xref="InterPro:IPR013751" + /translation="MFNNLKIIGVGTYHPQEEIDNEYFVDHFKKMDKDPSALLKHLGR + DKRFKAKKYGSENSLTMAVEASQKAITDAGITVEEIDMIVYASDFPEFVSPTNALMIN + SMLKAKANIVFDMNSNCISMISALDIINSYIQNKSIDNVLLVSSCMITPFAKEDDIVV + YPSTADASAAVILRKTQDENKSGVIDSNFFTDSSYNWTIKLPACGFSRINDNSVEAGM + KMMEWNQFDFSFLSDNWTSLINSMLENNSLKPEDVSLYLFSQFSRADILSTISKLQVM + EDKVIFVGNKYGYTGPTSPILALNEAKKRNKIVEGSYAILCSVGSGYTMGALLYKF" + gene 3445528..3447012 + /locus_tag="Ccel_2888" + CDS 3445528..3447012 + /locus_tag="Ccel_2888" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: chemotaxis sensory transducer; + KEGG: cbk:CLL_A3277 methyl-accepting chemotaxis protein" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL77182.1" + /db_xref="InterPro:IPR004089" + /translation="MNMFSHLVEEQLYQKNKIVLLCLLASISLRVVVDSIFKMPLKGI + LLLGLVGYILCAAGGLLIIKRLFPKATMYYFTCTMGIICFIMITSNPSLTTYLTVFLA + IVVVSIYSDIRPVLVCSLIGCFLTTYSYFNFKSEIFQDNNIIDLLFFNMYIFVCAFVL + FFLSYLTKKLYIKLEDTAVNAISSKEKAENLYNEIKATSYSLSKISSDIKLSINSTKE + IAEELGKAFNIVAEEAEKEVISIHKIKDLFQTGKTKMALSIEASNEMNSAVASAVSNI + GSGSDCLDNLSVEMVDAVNTINLVEKLATDLIGKNKMINNILSSVNNISKQTNLLSLN + ASIEAARAGEAGKGFSVVAEEVRKLAEESNNLTHQIESILKEMERNALDVTMEIVKEK + SYINNSKSATEQTKNIFNLIKEEIHSIETKNNNIKETAYDLHKSFELTDDEVIAISNN + TEKNAATAEEVTASVIEQNNRMDIIEDNYLKLDKLIEELNKFNG" + gene 3447152..3448198 + /locus_tag="Ccel_2889" + CDS 3447152..3448198 + /locus_tag="Ccel_2889" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77183.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3448402..3449190) + /locus_tag="Ccel_2890" + CDS complement(3448402..3449190) + /locus_tag="Ccel_2890" + /inference="protein motif:PFAM:PF01520" + /note="PFAM: cell wall hydrolase/autolysin; + KEGG: cth:Cthe_1804 cell wall hydrolase/autolysin" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase/autolysin" + /protein_id="ACL77184.1" + /db_xref="InterPro:IPR002508" + /translation="MIVLISKKNILFVVLLLLMSITILSIGLTVNYSKPVTADGNKAP + AEGVAPAVRTVILDAGHGGEDPGAVSDYSGLKEKDVNLNIVMLLKRLMEKDNYKVILT + RDSDRLVYTTESNNIIQKRREDLTRRKGIMDDSSADLVVSVHLNKFPQAQYHGAQVFF + PPKSDTSKKLADEIQNAIRLNVDNANDRVALVKKDPIMILKNLKTTTVIVECGFLSNV + DEEKKLAAEDYQNKLASAIKKGIDSYYKKDVHNNPKPNNSVPAE" + gene complement(3449343..3450206) + /locus_tag="Ccel_2891" + CDS complement(3449343..3450206) + /locus_tag="Ccel_2891" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77185.1" + /translation="MDKIRIISNSYNKAIEEGFNRYLDEKAAGGKSEIKIDEEALIAD + IEQKWLATGLPELDETTPAEFINSLTSLDELMDFFVCMASVSDVGVPGILIERFKLYG + GKAASARLLDFAERSLSTGVKDNDDIKSAVSQAVYTIGCLKEDEYKQKLIALLIETDY + DDMLLEAICYAIIVYGVSILQEVIDAFNTTDKQTVKEAFVVCVAEICSENGYKSDEVF + YFYKNAFRTISNLKLIVEIIGDYGDGRAIPFLRGYVHKNIDKIDITTFNLMRAIIKKL + GGEIEDLAYIE" + gene complement(3450207..3450743) + /locus_tag="Ccel_2892" + CDS complement(3450207..3450743) + /locus_tag="Ccel_2892" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77186.1" + /translation="MKKYLSGSWTVLKTYLIAMLIFYIFFPAFYKRLSLFSVFVFVIL + IVFIYAELHHLAGVNNRRYGSIQYYDGAIYGFLAVVPFAIIQVIISFLDFSIEGVNFP + VLRANLIKGLAAPMLFIEKSMNYSVIGYIVAWFTVILISFLGYFAGYKKFDVTGYARK + LLGLQPRKPKPKRNRRFF" + gene complement(3450821..3452584) + /locus_tag="Ccel_2893" + CDS complement(3450821..3452584) + /locus_tag="Ccel_2893" + /inference="protein motif:SMART:SM00636" + /note="SMART: leucine-rich repeat-containing protein + typical subtype; chitinase II; + KEGG: cpy:Cphy_1815 leucine-rich repeat-containing + protein" + /codon_start=1 + /transl_table=11 + /product="chitinase II" + /protein_id="ACL77187.1" + /db_xref="InterPro:IPR001611" + /db_xref="InterPro:IPR003591" + /db_xref="InterPro:IPR011583" + /translation="MKIHKTLICMILITAMAFGIVSPIAPEVQAVTKNKLELHAFYPA + QATFSDSLKKYIDSLDSVSFLWGRIYSDLTDGINTTYGKNGNTDFYYPSDYIEVLKYA + KSKNKSIQFGIFSDSSNAEKILPYKEQREKAIKSITDLLKSDVSHGNNIYFDGVVIDI + EGLNGQKTASFFNQFLKELKPKLAEINKKLYVAVNPLRYYSGYDYSSISQTADKMIIM + AHDYEPLTKLTKEQVMQYTGYDSLNPIDSLAPIKEIQHVMEDVKKYVSKNNLNKIMLQ + ISFDAAQWRFSVAKGSTWGKAGKKAVSLEVRDTPTYKMLYDRVINKDGNGKLITYSYN + NELQSPVMQYFNINNSTQNICLYENSRSVKAKIDISKQYGIGGVSLWSLSNVPDYTDK + TAKIYGLDVWDTIVKSLLFEAPTSQTKVTFADKVVEKAVRTKLFKPSGTLYKSDLAKV + YRLKIPAGYKTLNDLKQLTNLEYLDLSNTKLTSVSALASLKNLRVLYLYKNGIKDISP + IKGLTKLQVLSINGNKVSNISALAGLTQLTELYIRENTINDFSPVAKLKQLNILYLKG + NKSTNYSKLQTIKKGLIECDF" + gene 3452739..3453071 + /locus_tag="Ccel_2894" + CDS 3452739..3453071 + /locus_tag="Ccel_2894" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: swo:Swol_0655 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77188.1" + /translation="MNIGDKAKELTNAVMGTKEYIELKQAKSVIDKNKALRSKIEDFK + KKEDSLYKGKLSSNDAQKRAAELNKIFENLNNIPEVSRFVNAEKSFNDMLQKIYRQVN + DTLEASLK" + gene complement(3453133..3453570) + /locus_tag="Ccel_2895" + CDS complement(3453133..3453570) + /locus_tag="Ccel_2895" + /inference="similar to AA sequence:KEGG:Cthe_0453" + /note="KEGG: cth:Cthe_0453 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77189.1" + /translation="MGEGCGFAGASPVGNWDALLASYIGQTVTIFTSSGGQSGSGFTG + VLLAVNPVFVRLITRIGPPPGCSLGNACTGFNAGYGSGYGGGHCGISGGYSMGAYGPG + PVLPASINGAATAGGWDSLPVYTVGSVTDIPVASIVSFVHNAV" + gene complement(3453738..3454211) + /locus_tag="Ccel_2896" + CDS complement(3453738..3454211) + /locus_tag="Ccel_2896" + /inference="similar to AA sequence:KEGG:Cthe_0453" + /note="KEGG: cth:Cthe_0453 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77190.1" + /translation="MSEEFEFERGTTKAACSPVVNWEALLAKYIGQTVTIFTSSGGDS + GSGFTGVLMTVNSVFVRLLTRIGPPPGCSLGNSCTNFSVDGGKGYGGGYGSGNCCGSG + FGGYGVGMSGSGPIVPANVNGAVTAGGWDSIPVYTVGSVTDIPIPSIVSFVHNAV" + gene complement(3454242..3454430) + /locus_tag="Ccel_2897" + CDS complement(3454242..3454430) + /locus_tag="Ccel_2897" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77191.1" + /translation="MDRLSDSMEIPAMAIATEDIAGMTTITMVIEPDIIKKQRPDGSP + SGRCFFIISHICFIVHIR" + gene complement(3454658..3455083) + /locus_tag="Ccel_2898" + CDS complement(3454658..3455083) + /locus_tag="Ccel_2898" + /inference="similar to AA sequence:KEGG:Cthe_0453" + /note="KEGG: cth:Cthe_0453 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77192.1" + /translation="MSDGCGSGGGMSPATNWGALLASYVGETVTIFTSSGGQSGSGFT + GVILAVNPVFIRLLSRIGPPPGCSLGNACTGFNQGGYGTGFGTGYGTGCGSGYGPIGP + AGQVGAANAGGWSNLPVYTVGSVVDIPIAAIVSFVHSAV" + gene complement(3455162..3455533) + /locus_tag="Ccel_2899" + CDS complement(3455162..3455533) + /locus_tag="Ccel_2899" + /inference="similar to AA sequence:KEGG:Cthe_0263" + /note="KEGG: cth:Cthe_0263 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77193.1" + /translation="MDYKQIEKLKFALLNLARQGCRLNIPSYGISGRIIGVGFKPYWT + SPVDSQIEKLEINYMDDSGKIVPFNFHNIISYNVISNDGTGYENMQNACMDIHVFSQS + KSRDEEPYEKVRVEILKDTQI" + gene complement(3455748..3455822) + /locus_tag="Ccel_R0065" + /note="tRNA-Cys1" + tRNA complement(3455748..3455822) + /locus_tag="Ccel_R0065" + /product="tRNA-Cys" + gene complement(3455867..3455941) + /locus_tag="Ccel_R0066" + /note="tRNA-Gly3" + tRNA complement(3455867..3455941) + /locus_tag="Ccel_R0066" + /product="tRNA-Gly" + gene complement(3455981..3456056) + /locus_tag="Ccel_R0067" + /note="tRNA-Phe2" + tRNA complement(3455981..3456056) + /locus_tag="Ccel_R0067" + /product="tRNA-Phe" + gene complement(3456061..3456137) + /locus_tag="Ccel_R0068" + /note="tRNA-Asp1" + tRNA complement(3456061..3456137) + /locus_tag="Ccel_R0068" + /product="tRNA-Asp" + gene complement(3456158..3456233) + /locus_tag="Ccel_R0069" + /note="tRNA-Val3" + tRNA complement(3456158..3456233) + /locus_tag="Ccel_R0069" + /product="tRNA-Val" + gene complement(3456381..3457259) + /locus_tag="Ccel_2900" + CDS complement(3456381..3457259) + /locus_tag="Ccel_2900" + /inference="protein motif:PFAM:PF01430" + /note="PFAM: Hsp33 protein; + KEGG: cth:Cthe_1852 HSP33 protein" + /codon_start=1 + /transl_table=11 + /product="Hsp33 protein" + /protein_id="ACL77194.1" + /db_xref="InterPro:IPR000397" + /translation="MGDYIVRMTAAQGTVRAFGAMTTEMVGQAAEIHGLSPIATAALG + RTMTAAGMMSKMLKGENDKLTIQLKGDGPLGGIVVVSDSKANVRGYVHNPNVYLPLNE + RGKLDIRTAMGYGYINVIRDMGLKEPYIGLSQLVSGEIADDLTYYFATSEQVPSTVAL + GVLIDATGVIGAGGFIVQMMPGAEEETVATLEKRLIGFPSVSKLISEGTTPEQILNML + LEGMEPKIVETVPCSFKCNCTRERMERNLISIGKKDLLEIFEDGKGAELQCHFCNTKY + NFSHQDIENIVKENVK" + gene complement(3457410..3457610) + /locus_tag="Ccel_2901" + CDS complement(3457410..3457610) + /locus_tag="Ccel_2901" + /inference="protein motif:PFAM:PF00313" + /note="PFAM: Cold-shock protein DNA-binding; + SMART: Cold shock protein; + KEGG: cth:Cthe_1853 cold-shock DNA-binding protein family + protein" + /codon_start=1 + /transl_table=11 + /product="cold-shock DNA-binding domain protein" + /protein_id="ACL77195.1" + /db_xref="InterPro:IPR002059" + /db_xref="InterPro:IPR011129" + /translation="MEKGRVKWFNAEKGFGFIERDGGNDVFVHFSAITMDGYKTLEEG + SEVVFDVVEGAKGPQAANVQRA" + gene complement(3457867..3458613) + /locus_tag="Ccel_2902" + CDS complement(3457867..3458613) + /locus_tag="Ccel_2902" + /inference="protein motif:PFAM:PF08242" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: cth:Cthe_1855 methyltransferase type 11" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 12" + /protein_id="ACL77196.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MCSFIYNNFAYVYDKLTLDIDYRRWADYVESIFKKHNLNVSMIL + ELGCGTGSFGIEMARRGYDMICLDLSADMLDCASEKAQKEGLDILFLNQNMCSFELYG + TVDAIVCLLDSFNYLTKPAQINKMFKLVQNYLNPGGVFIFDINTQYKFENVIADNLFY + EINDDVTYIWENNYNPKTRKARFDLTFFVKQGELYERFDETHYEKSYSDSEIMDFIKS + SGMKFVSQYGELTLRKASPVSQRNFYVCRK" + gene complement(3458681..3458848) + /locus_tag="Ccel_2903" + CDS complement(3458681..3458848) + /locus_tag="Ccel_2903" + /inference="similar to AA sequence:KEGG:Cthe_1856" + /note="KEGG: cth:Cthe_1856 small acid-soluble spore + protein beta" + /codon_start=1 + /transl_table=11 + /product="small acid-soluble spore protein beta" + /protein_id="ACL77197.1" + /db_xref="InterPro:IPR001448" + /translation="MDNNEKLKYEIAQELGLMEKVMKNGWKSLTPKETGRIGGLVTKR + KKLQVQESQQI" + gene complement(3458900..3460147) + /locus_tag="Ccel_2904" + CDS complement(3458900..3460147) + /locus_tag="Ccel_2904" + /inference="protein motif:TFAM:TIGR00225" + /note="TIGRFAM: carboxyl-terminal protease; + PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; + KEGG: cth:Cthe_1857 carboxyl-terminal protease" + /codon_start=1 + /transl_table=11 + /product="carboxyl-terminal protease" + /protein_id="ACL77198.1" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR004447" + /db_xref="InterPro:IPR005151" + /translation="MLNMKDQETKRLFSVITMTAVVCFTISILVYGGLMYFNGSYSLI + FNKNSVDRETIQKFNEARSILQKAYYENVDTNKLVEGAISGMTESLNDPYTVYYNKQQ + MKWFTGLQNNTENEYVGVGLPIMLDKNGIVTVLEPYDNSPAKIAGIKQGDKILKIDGK + DITGIKDETLVASMIKGPENTETVLTILRESDNSTIDIPVMRKKIKALVNIRSEMLDG + NIAYIKLKMFDKNISKNFISQLNKLVKQGAKGLIIDVRDNPGGLYDEVVTLADRLLPK + GTIVFTKDKNGKKSVQSSDENELNMPIAVITNGNSASASEILAGAVKDFKKGTLIGTK + TFGKGLVQTTYSFKDGTGLKVTIARYYTPSGVCIQGQGIKPEIEVKLPEKYKDIDVAA + IPKEDDLQLQKGIEVISKKIISD" + gene complement(3460289..3461416) + /locus_tag="Ccel_2905" + CDS complement(3460289..3461416) + /locus_tag="Ccel_2905" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: cth:Cthe_1858 peptidase M23B" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL77199.1" + /db_xref="InterPro:IPR000342" + /db_xref="InterPro:IPR016047" + /translation="MKKRLTLLMVIFYIFSCVVIPASATTLDKAKEQQKNVKGELNQI + AGEKKALSNQIEQGKEDKENLESQAQKAQNSLKKKSVEVSDVKADIERITKEIEQIDE + DYKAKTELFKTRMRIMYQNMNQSPFEVFVESKSLSEFFTRLEIISLVKENDNKLIQEI + ITGRESTELQKQDKLRELQEKNQQLKTLTNKVSDIKNTSQKVQSEIEASKSKLKDLEK + KEDEMIALSKELAKKITKLSSTTAKYAGGVLSWPTPGYTRISSPYGNRIHPIYKVRKF + HTGIDIDAASGATIIAANSGRVIMAGWNGGYGNCVIIDHGGGLATLYAHQSKILVQVG + DYLKKGDTVGKVGSTGLSTGPHLHFEVRKAGDTKDPLAYYK" + gene complement(3461454..3462368) + /locus_tag="Ccel_2906" + CDS complement(3461454..3462368) + /locus_tag="Ccel_2906" + /inference="protein motif:PFAM:PF02687" + /note="PFAM: protein of unknown function DUF214; + KEGG: cth:Cthe_1859 cell division protein FtsX" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF214" + /protein_id="ACL77200.1" + /db_xref="InterPro:IPR003838" + /translation="MKIRSLKYILKESFKNAYRNKLMSLASISIISAALVLFGVFYLI + LINLNHNLDILYEQPQMQAYCLPTLTDQQISAVETEIKNNKHIESYTVVTKKEAYEQF + KRFLSSDKSNEGGANILEGYDESSMNVSFIIKVKDPQNSKLVAGQLRALAGMENVKYS + QQTIDLIYTISKWVRIVSLVLIGVLLIISLFIISNTIKLTVFARRKEINIMKYIGATD + WFIRWPFIFEGILIGLTGALFAFIIISYLYGFTQPRITSNLTTLGDGFEIMDYKYVWN + TLVLFYLGVSALIGASGSVMSIRKHLHV" + gene complement(3462337..3463044) + /locus_tag="Ccel_2907" + CDS complement(3462337..3463044) + /locus_tag="Ccel_2907" + /inference="protein motif:TFAM:TIGR02673" + /note="KEGG: cth:Cthe_1860 cell division ATP-binding + protein FtsE; + TIGRFAM: cell division ATP-binding protein FtsE; + PFAM: ABC transporter related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="cell division ATP-binding protein FtsE" + /protein_id="ACL77201.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005286" + /db_xref="InterPro:IPR017871" + /translation="MVEFIDVYKKYPNGTVALKGINLKINKGDFAFIIGSSGSGKSTL + LKLLMKEESVTQGEVIVNGYQLSELHARQIPYLRRGIGMVFQDFRLLPNKTVYENIAF + AMEITECIPREIRRQVPMSLALVGLSRKANAYPHQLSGGEQQRVAIARSLVNNPALLI + ADEPTGNLDPENSWEIVKLLTEVNQRGTTVIVATHERSIVDAMKKRVIAIEKGKIIRD + QQKGLYVDEDTQFKIYS" + gene complement(3463096..3464175) + /locus_tag="Ccel_2908" + CDS complement(3463096..3464175) + /locus_tag="Ccel_2908" + /inference="protein motif:PFAM:PF02954" + /note="PFAM: helix-turn-helix Fis-type; + KEGG: cth:Cthe_1861 CdaR family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, CdaR" + /protein_id="ACL77202.1" + /db_xref="InterPro:IPR002197" + /translation="MSVKLFQTLSDKYSEILGKEVGVTDDEGVIIAHSNFQMIGQQDQ + KAASFVPEKAQQSLIDGILYNKVILKNKIEFITFIQAADPQDSKYLELFTLNILNLKS + YYDEKYDKNTFVKNIVVENILPGDILVRSKELHIDYNAMRVVYLINATSDKDVHVHEV + IESLFPNKGKDFVVVIDDDNVVLVKEVKSKDDYKEVYKLARVIVDTINSELMVKAYIG + IGTIIDNLKDITKSFKEAQMSMIIGNIFSEDNNIFDYNNLGMGRLIYHIPTTLCQLFL + EEVFKENSVDSLDSETMLTIQKFFENNLNVSETARQLYIHRNTLVYRLEKIKRLTGLE + LTSFDDAVIFKVAILVKKYLANIND" + gene complement(3464432..3465550) + /locus_tag="Ccel_2909" + CDS complement(3464432..3465550) + /locus_tag="Ccel_2909" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; TOBE domain protein; + Transport-associated OB domain protein; + SMART: AAA ATPase; + KEGG: cth:Cthe_1862 ABC transporter related protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77203.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005116" + /db_xref="InterPro:IPR013611" + /db_xref="InterPro:IPR017871" + /translation="MASLKLKNIYKRYPGGVTAVNDFNLDIQHNEFLVLVGPSGCGKT + TTLRMIAGLEEISEGELYIGDKLVNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLK + LRKTPKEEIKKRVQEAAKILDIEHLLDRKPKALSGGQRQRVALGRAIVREPKVFLMDE + PLSNLDAKLRVQMRTEIGRLHNRLNTTFIYVTHDQTEAMTMGTRIVVMKDGYIQQVDT + PTALYDRPCNVFVGGFIGSPQMNFMNAVLTKRGNDLHLVFGKNDIKIPEGKAKKLDGT + DYIGKEVIIGVRPEHIHDEAVFVESMPDSIVEAKVDLVEMLGAETYLYMIIEGATGTV + TARVNARTKTQGGDVIKVAIDANKVHIFDKETERAIIN" + gene 3465879..3466820 + /locus_tag="Ccel_2910" + CDS 3465879..3466820 + /locus_tag="Ccel_2910" + /inference="protein motif:TFAM:TIGR01851" + /note="TIGRFAM: N-acetyl-gamma-glutamyl-phosphate + reductase; + PFAM: Semialdehyde dehydrogenase NAD - binding; + KEGG: rso:RSc0142 N-acetyl-gamma-glutamyl-phosphate + reductase" + /codon_start=1 + /transl_table=11 + /product="N-acetyl-gamma-glutamyl-phosphate reductase" + /protein_id="ACL77204.1" + /db_xref="InterPro:IPR000534" + /db_xref="InterPro:IPR010136" + /translation="MKYKIYVDGSEGTTGLKINERLEKRNDIEILKINPEKRKDINER + KKYINEADIVFLCLPDAAAKEAITLVENSSTKIIDASTAHRINPDWAYGLPELGIELR + KKIQSSKRVAVPGCYATGFISIVYPIVAANIIPKDYPLTCHALSGYSGGGKKLISQYE + SPQGHNFESPQLYALGLSHKHIPEMTVISGLEFPPIFSPIVCSYFKGMSVCVPLHRRL + LPDNLSMEKIHEFISDYYSNEEFIKVMPLGMEKEFPNSFLGATRVNDTNYLEIFVTGN + EEQIMLVSVLDNLGKGSSGAAIQNMNIMLGFDENTGL" + gene 3466862..3467773 + /locus_tag="Ccel_2911" + CDS 3466862..3467773 + /locus_tag="Ccel_2911" + /inference="protein motif:TFAM:TIGR00761" + /note="TIGRFAM: acetylglutamate kinase; + PFAM: aspartate/glutamate/uridylate kinase; + KEGG: cth:Cthe_1864 acetylglutamate kinase" + /codon_start=1 + /transl_table=11 + /product="acetylglutamate kinase" + /protein_id="ACL77205.1" + /db_xref="InterPro:IPR001048" + /db_xref="InterPro:IPR004662" + /translation="MNYDNLIKKVEILVEALPYIQKLYGKTVVIKYGGNAMINDELKN + SVMEDITLLKYIGMNPVLVHGGGPDINKALQSFNVKSEFVNGLRVTDAKTIEVAQMVL + VGKTNKQIVSMLNHKGGKAIGLCGIDGKLIECEQYKTEIDGELKDIGYVGKITKINSK + VLELISKDEYIPVVAPIGVGPDGDSYNINADTVAGEIAAALKAEKLMLLTDVEGVKPS + KDSESIIPALTIDDVYDLIDKKVIDGGMIPKVLGCVEALEKGVGRTHIIDGRIPHCIL + LEIFTYKGIGTMIMKDKQLYHKNEALY" + gene 3467958..3469160 + /locus_tag="Ccel_2912" + CDS 3467958..3469160 + /locus_tag="Ccel_2912" + /inference="protein motif:TFAM:TIGR00707" + /note="TIGRFAM: acetylornithine and succinylornithine + aminotransferase; + PFAM: aminotransferase class-III; + KEGG: cth:Cthe_1866 acetylornithine aminotransferase" + /codon_start=1 + /transl_table=11 + /product="acetylornithine and succinylornithine + aminotransferase" + /protein_id="ACL77206.1" + /db_xref="InterPro:IPR004636" + /db_xref="InterPro:IPR005814" + /translation="MILKKIQEYDDKYYMNTFGKRIPISFKKGKGIHLWSTAGEKYTD + FFSGIAVNSIGYGHPIFTEMVCEQLNKLVHCSNLYYIEPQAKLAKELVENSCADKVFF + ANSGAEANEGAIKLARIYFKKLGFPEKYEIITLHKSFHGRTITTLSATGQKKYATPFE + PLTPGFKKVPQNDFAALEAAVTENTCAIMLEPVQGESGVYPCDCEYMKKVRKLCDDKN + LLLIFDEVQTGMGRTGKLFGYQNFNIEPDIFTLAKALGGGIPIGALCAKESVAKAFTP + GDHGSTFGGNPLACTAGLAVMKIMKDEKLPENAQEIGSYINSELEKLASSSCPIISEV + RVSGLMIGIELNKPIAPDIKSKMFEKKYLIANVGQNILRILPPLIITQKDADDFIATL + KSVIEELN" + gene 3469203..3470258 + /locus_tag="Ccel_2913" + CDS 3469203..3470258 + /locus_tag="Ccel_2913" + /inference="protein motif:TFAM:TIGR01368" + /note="TIGRFAM: carbamoyl-phosphate synthase, small + subunit; + PFAM: glutamine amidotransferase class-I; + Carbamoyl-phosphate synthase small chain; + KEGG: cth:Cthe_1867 carbamoyl-phosphate synthase small + subunit" + /codon_start=1 + /transl_table=11 + /product="carbamoyl-phosphate synthase, small subunit" + /protein_id="ACL77207.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR001317" + /db_xref="InterPro:IPR002474" + /db_xref="InterPro:IPR006220" + /db_xref="InterPro:IPR006274" + /db_xref="InterPro:IPR011702" + /translation="MKAVLLLEDGTYFSGEGFGKSGETAGEIVFNTSMTGYQEIITDP + SYNGQIVTMTYPLIGNYGFNSFDNESYKPHVQGFIVKELCSTPSNWRNDMDPDQYFAK + HNIVGIKSIDTRALTQHIRRHGSMYGIISTECGNLDILSKNLKNYKTVPRNLVMEVTS + KTPTHIPGSGKKVALLDLGVKSNIIRSLESRNCDIHILPAFSTFDEIMDLNPDGIFLS + NGPGNPMDLTVAKKTVQKLLGIKPIMGICLGHQLLGLSLGCNVKKLKFGHHGGNHPVK + DYITGRCYITSQNHNYVIDSTSSDDIVITHKNVNDDTIEGFRHKTLPVISVQYHPEAA + PGPQDSAYIFDDFIKMM" + gene 3470329..3473541 + /locus_tag="Ccel_2914" + CDS 3470329..3473541 + /locus_tag="Ccel_2914" + /inference="protein motif:TFAM:TIGR01369" + /note="TIGRFAM: carbamoyl-phosphate synthase, large + subunit; + PFAM: phosphoribosylglycinamide synthetase; ATP-dependent + carboxylate-amine ligase domain protein ATP-grasp; protein + of unknown function DUF201; Carbamoyl-phosphate synthase L + chain ATP-binding; Carbamoyl-phosphate synthetase large + chain oligomerisation; Carbamoyl-phosphate synthetase + large chain domain protein; MGS domain protein; RimK + domain protein ATP-grasp; + KEGG: cth:Cthe_1868 carbamoyl-phosphate synthase large + subunit" + /codon_start=1 + /transl_table=11 + /product="carbamoyl-phosphate synthase, large subunit" + /protein_id="ACL77208.1" + /db_xref="InterPro:IPR000115" + /db_xref="InterPro:IPR003135" + /db_xref="InterPro:IPR003806" + /db_xref="InterPro:IPR005479" + /db_xref="InterPro:IPR005480" + /db_xref="InterPro:IPR005481" + /db_xref="InterPro:IPR005483" + /db_xref="InterPro:IPR006275" + /db_xref="InterPro:IPR011607" + /db_xref="InterPro:IPR011761" + /db_xref="InterPro:IPR013651" + /translation="MPRNINIKKVLVIGSGPIVIGQAAEFDYSGTQACKSLREEGIEV + VLINSNPATIMTDTQSADKVYIEPITLEFVKKIIYKEKPDGILASLGGQTGLNMAVQL + AEDGILDDLNIELLGTSLSSIKKAEDRELFKETMQEINEKVAPSKIVTTMQDAIEFAE + KIGFPIIIRPAYTLGGSGGGIANNMEEFKYICGKGLKLSMISQVLLEQSVAGWKEIEY + EVMRDSSDNCIIICNMENFDPVGVHTGDSIVVAPSQTLSNVEYQMLRNASIRIIRALD + IKGGCNIQFALNPSSFEYVVIEVNPRVSRSSALASKATGYPIARVTAKIAIGMTLDEI + KNSVTKTTSAFFEPSLDYVVTKVPRWPFDKFANADRSLGTQMKATGEVMAIGRTFEES + LLKAIDSLDIKFNYQLGLSLFDNMSREDLVEYVKNPSDQRIFAICKAIQKGVSAGEIV + RITKIDDFFIRKLKKIVRLGEEITNAGIAWLDYDLYARAKKIGFGDSYIANLANVPLE + KILELRQKYPINPVYKIVDTCAGEFEAATPYYYSTYEEKDDVEVTIGDKVLVIGSGPI + RIGQGIEFDYCSVHSVETLKEMGIESIIINNNPETVSTDFDTSDKLYFEPLTKECVLD + IIEKEKPLGVIVQFGGQTAINLAETLHQEGVNILGTSVHSIDIAEDRYKFLKLLETLD + IPIPEGNTAFSFQHAKEIANKIGYPVLVRPSYVLGGRAMEIVYNDKTLEEYITMASEI + STEHPILIDKYVVGREMEVDGICDGNEVLIPGIMEHIERAGVHSGDSIAVYPPRNLSK + EVKATIEDYTIRLAKALKVVGLFNIQFVMDSDQKVYVIEVNPRASRTVPIMSKITGIP + MVGVSTKLIMGKTLKELGYKNGLTKETNFYAVKAPVFSFAKLTTVDTFLGPEMKSTGE + VMGVDKDYYNALYKAVAASGTKIPSGGNVLLSVADRDKTECRDIANKLLELGFKLSAT + KGTYEAIKSVDLPVECIDDDKVLDLIKEDKITLVINTPTRGKIPERTGFVLRRTAMEY + NIPCITSLDTTNAVLSILERLIADNKADVYSLDEYSVYKG" + gene 3473565..3474482 + /locus_tag="Ccel_2915" + CDS 3473565..3474482 + /locus_tag="Ccel_2915" + /inference="protein motif:TFAM:TIGR00658" + /note="TIGRFAM: ornithine carbamoyltransferase; + PFAM: aspartate/ornithine carbamoyltransferase + Asp/Orn-binding region; aspartate/ornithine + carbamoyltransferase carbamoyl-P binding domain; + KEGG: cth:Cthe_1869 ornithine carbamoyltransferase" + /codon_start=1 + /transl_table=11 + /product="ornithine carbamoyltransferase" + /protein_id="ACL77209.1" + /db_xref="InterPro:IPR002082" + /db_xref="InterPro:IPR002292" + /db_xref="InterPro:IPR006130" + /db_xref="InterPro:IPR006131" + /db_xref="InterPro:IPR006132" + /translation="MKHLLSLNNLNSNEIQDLLKLSEKLKRQTKEGVQHHLLKGKTLG + MIFSKSSTRTRVSFEVGMYQLGGYSLFLSSNDIQLGRGESIFDTANVLSRYIDGIMIR + TFNQSDVEDLAKYGTIPVINGLTDEMHPCQILADLLTIYEHKGKLEGLKLAYIGDGNN + VAHSLLHGCAKTGMDISIASPKGYECDSRYVDEAKEAAKSIGSKVVLTQDPVEAISKA + DVVYADTWISMGQEDQKEEKLNIFMPYQINSQLFAKAKEDAIFLHCLPAYRGYEVTED + IIDGAQSVIFDEAENRLHAQKAVMATLMG" + gene 3474504..3474980 + /locus_tag="Ccel_2916" + CDS 3474504..3474980 + /locus_tag="Ccel_2916" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL77210.1" + /db_xref="InterPro:IPR000182" + /translation="MNYSFIIRKATLEDAPAIATIIQEAFKKYMQDAGLSVMMDALTE + NIETIEADIVEKEVYIALIDDKPVGTIRIKLLPDKTAYISRFGVMLDYHNIGIGKSLM + NLVDKILKSHGVKKVSLHTASKYRDLIRFYYARDFYVESISTDRGYIRALLVKEYS" + gene complement(3475068..3475685) + /locus_tag="Ccel_2917" + CDS complement(3475068..3475685) + /locus_tag="Ccel_2917" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: sth:STH1943 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77211.1" + /translation="MKGMKKMSQFEPNAKGQYGGGDFEYDGGKKFTEKCIKVPEVIGR + NSCQQLVECVIPFPEQYPAIEIKDVQKEIRDLLVHVCKNKVLINGVLHKNINYKTYEG + NSDFYYCYQKYDSYYGDVRHVAVNIPFACFIEIPGACPGDDYQIEYADVEDSCEVDIL + EDPCHSKGPVKEYKKLREKVIIKIDLKVLRYIQITVKPEKCNICP" + gene 3475857..3477989 + /locus_tag="Ccel_2918" + CDS 3475857..3477989 + /locus_tag="Ccel_2918" + /inference="protein motif:TFAM:TIGR01702" + /note="TIGRFAM: carbon-monoxide dehydrogenase, catalytic + subunit; + PFAM: Prismane; + KEGG: amt:Amet_1177 carbon-monoxide dehydrogenase, + catalytic subunit" + /codon_start=1 + /transl_table=11 + /product="carbon-monoxide dehydrogenase, catalytic + subunit" + /protein_id="ACL77212.1" + /db_xref="InterPro:IPR004137" + /db_xref="InterPro:IPR010047" + /translation="MSDKDIKNSFEKSAGTMRGDSTTFGTKLTQEDSNDPNTHSDIHN + RIKIDYDKIEKSPSMEEVHKWQREHIKKNDQSKEGYPLNVIIDPAMREMYQVVHDSGM + TNVFDRFSQQQPIQCKFCIEGLSCQLCANGPCRINDKVPRGTCGVDAHTMVARNFMYR + HVTIGTSANIFHCHQAARTLKAAGEHPDSGLKIRDPEKLKKYADMAGLNANQPIEKLA + IEFATWVMDDIHAPFHVPSKAVEAFAPTQRKELWNKLGLFPGGGYSEVAYAQTRCMTN + FTSDPVEFLLNSVRLGVANEYQGLFLLDIIQEILMGTQEIVQKKQNMGLLKENMINVV + TNGHMPLLADVAIDLASTDEWQQKAKAAGADGIQILGHVCEGQQLMNYKGTHNQKGYG + GQEGEWLSQEYLLATGVVDLFMFDYNCTVPTMPLFAKRFGTKLLSTHPVIQLQGTETL + DFIPEKMNQQASKALDMAIDAFKQRKSENRKTYIPPHVSDCTVGFSTEPIRNALGGSF + DPLIEQIANGNIRGIATIVGCTTARFGQGGSNIFKITKGLIANNILVLSGGCTSSVME + YTGLTDPKAADECGEGLKVVCKQLGIPPVLSYGACVDIGKMTHTAKELADALKVDTNK + LPLVIGAPEYLEQKAVADACTAVALGWLVHIAPVPSITGSDVVVKTLTETTETLGLGK + VVVELDAEKTVQIYVDHIEKKRKELGLS" + gene 3478026..3478370 + /locus_tag="Ccel_2919" + CDS 3478026..3478370 + /locus_tag="Ccel_2919" + /inference="similar to AA sequence:KEGG:STH1266" + /note="KEGG: sth:STH1266 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77213.1" + /translation="MELKNIQDSMVFNEKNLTKRILFANPKVLAFVLNLKPGQTLPVH + KHENSELIYYVLTGSGQIRVNDEVHEISFGSIGSASGQDDFSIPLVKEDLSLYVTISP + NPSNEMYSKGID" + gene complement(3478436..3479347) + /locus_tag="Ccel_2920" + CDS complement(3478436..3479347) + /locus_tag="Ccel_2920" + /inference="protein motif:PFAM:PF02588" + /note="PFAM: protein of unknown function DUF161; + KEGG: cth:Cthe_2703 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF161" + /protein_id="ACL77214.1" + /db_xref="InterPro:IPR003740" + /translation="MLNMGKILSTLRSYLLITFGAGITALAINIFLVPYKIAPGGLSG + LATVLYYLTNGKLSIGITMLAINVPLFLMGYKFIGRKFFIRTLYGTVILSVIIDVTEK + YIGNMAQILLLGGTPSSMTPDILLYSIIGGFISGIGLGIVLKMDATTGGTELAAKLLN + KMFHSLTIGQMLLAIDAIIIMFAIIVFNSILIGLYSLVSLFITIKVIDAIVEGVNYAR + AFFIISEKQEEISRRLLVELDRGVTELKGRGVYSGKDKNILLCVAARSQVQQLKEIVY + EIDKNAFMILTDVREVLGEGFTGTIYK" + gene 3479544..3480287 + /locus_tag="Ccel_2921" + CDS 3479544..3480287 + /locus_tag="Ccel_2921" + /inference="protein motif:TFAM:TIGR00696" + /note="TIGRFAM: glycosyl transferase, WecB/TagA/CpsF + family; + PFAM: glycosyl transferase WecB/TagA/CpsF; + KEGG: cth:Cthe_2701 N-acetylmannosaminyltransferase" + /codon_start=1 + /transl_table=11 + /product="glycosyl transferase, WecB/TagA/CpsF family" + /protein_id="ACL77215.1" + /db_xref="InterPro:IPR004629" + /translation="MRKLVNIAGINIDNITMEQAVERVYSFIDSGKNHSVYTPNAEIM + MDGITNKQLKEILNSADILVADGAGVVLASKILGKSVAEKVSGFDLAKNLLIASSKRP + IKFFLFGGKPGIPERAHANVICDYPGAEIVGTRNGYFSQEDESEIINQINNSGADVLF + VCLGAPKQEQWIHKHKEQLNVKVCMGLGGTIDILAENVKLAPDFFRNHGLEWLYRLYK + EPWRFKRMLRLPKFILYILGIKFGLIKVK" + gene complement(3480348..3482225) + /locus_tag="Ccel_2922" + CDS complement(3480348..3482225) + /locus_tag="Ccel_2922" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: lsp:Bsph_2834 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77216.1" + /translation="MKKKTKPSPKLNKRIDNLVRVVLVLSIAIIVFFFAIRPMIFKKD + YYFDSGDDVTLENLGTDKGTDIYDIAVVGDGIDGISAALGAAGVGAKTILICSDKELG + SQIGESFNTSWSPDVTPTGNNVSSDIFKEIRYKSGEGINIGNYLKTIKEMVSEKKNLD + VMYESQITDMGVQSGQVQNIQFDTPKGKRTVKAKQYIDATNDGEILKRANVPYSVGYS + DIGIKQLFPPIYLNFMVSGVDYKEIEKLMKEQKMLVNSILKQYNTSNSNVSVSGFNIS + DQGNSKVLIEGITVKNVDLQNEKKIQEYYNIASKECMDLFQFLKLNLEPFKDAGGFSV + AAQFVKPSAYHFKGLYNLTLGDILTGKRFSDRISTASRPVTMTMEDGNGYILCNPKIF + YIPLRSIIPQGLTNVLMTGDKISCSSLVQSAINSNSSKSGSGYAAGIISAYSISKSID + IPHIVEDYNLDTQAELEKVLRKKGIFMSDITEDLTSITENWSYPYAEKLINIGLLSAG + ITNDMKFNKKAKSQDFAYVILNGVVRTSPDKYNYDFDTILRAYLKDEPLTKDKLAQIL + LDVAGKKTSGENYYDDARKQGLVDETLEQKLKNKSHVEYSDMYYAAVKAIEKITGKPM + N" + gene complement(3482354..3482884) + /locus_tag="Ccel_2923" + CDS complement(3482354..3482884) + /locus_tag="Ccel_2923" + /inference="similar to AA sequence:KEGG:Clos_2272" + /note="KEGG: aoe:Clos_2272 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77217.1" + /translation="MRGLLKKIKKGYIITALILIGGFALLHIAPAVMASTTPTSTSSS + PVLYDKTYIDALETELKNLIQTSNAQKKVAELEKEIEDLKAGMVFKIIKLQAGQTLIG + SESCEIIVRNKNRVTAYVASTATGGISNLISGRDIKNGEVIPDNQLLLIPKADGRGIK + ANVAADIMIKGTYTIK" + gene complement(3482913..3483263) + /locus_tag="Ccel_2924" + CDS complement(3482913..3483263) + /locus_tag="Ccel_2924" + /inference="protein motif:PFAM:PF02452" + /note="PFAM: PemK family protein; + KEGG: cth:Cthe_2699 transcriptional modulator of + MazE/toxin, MazF" + /codon_start=1 + /transl_table=11 + /product="transcriptional modulator of MazE/toxin, MazF" + /protein_id="ACL77218.1" + /db_xref="InterPro:IPR003477" + /translation="MVIKRGDIYYADLSPVIGSEQGGVRPVLIVQNDVGNKYSPTVIA + AAITSQINKAKLPTHIEIGALEYGLAKDSVILLEQIRTIDKKRLREKIGHLDDELMTE + VNNALEVSFGLSET" + gene complement(3483257..3483541) + /locus_tag="Ccel_2925" + CDS complement(3483257..3483541) + /locus_tag="Ccel_2925" + /inference="protein motif:PFAM:PF01402" + /note="PFAM: CopG domain protein DNA-binding domain + protein; + KEGG: aoe:Clos_2274 CopG family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, CopG family" + /protein_id="ACL77219.1" + /db_xref="InterPro:IPR002145" + /translation="MSQYKKIMVSIPDNLLEEIDNMVTVEKTNRSELVREAMKLYLKE + RHKIRLREEMKLGYEEMAEINLKLAEVCLAADNEQQCKYEERLGEMEETW" + gene complement(3483694..3484863) + /locus_tag="Ccel_2926" + CDS complement(3483694..3484863) + /locus_tag="Ccel_2926" + /inference="protein motif:TFAM:TIGR00492" + /note="TIGRFAM: alanine racemase; + PFAM: alanine racemase domain protein; + KEGG: cth:Cthe_2697 alanine racemase" + /codon_start=1 + /transl_table=11 + /product="alanine racemase" + /protein_id="ACL77220.1" + /db_xref="InterPro:IPR000821" + /db_xref="InterPro:IPR001608" + /db_xref="InterPro:IPR011079" + /translation="MEYKLNRAWAEISLDNIAHNIREIRKITGKNAEIMGVVKADAYG + HGVMEVAKTLLENGASRFAVSMLDEAIQLRRAGIEVPILILGYTDPIRANEIIENDVT + QSVFSHDLAQALSDEAVRQGKKVKIHIKIDTGMSRIGFLPGYSAVKNVVDISTLPNII + IEGLFTHFATADEKNRDYTYTQFERFMSICCELQRIGIHIPVKHCANSAAVIEYPEMH + LDMVRPGIILYGMYPSSEVDKSKIDLKPAMTLKANVIMVKEVEKNTSISYGRIFTTNR + TSKIATIPIGYADGFTRMLSNKGKVLIHGELAPVVGRICMDQCMVDVTHIGSKVEVGD + EVVLIGSQGQNNIMVEDVAQTIGMINYELVCIVGKRIPRAFVKDGKISKILNYLI" + gene complement(3484953..3486503) + /locus_tag="Ccel_2927" + CDS complement(3484953..3486503) + /locus_tag="Ccel_2927" + /inference="protein motif:TFAM:TIGR00196" + /note="TIGRFAM: carbohydrate kinase, YjeF related protein; + PFAM: protein of unknown function UPF0031; YjeF-family + domain protein; + KEGG: cth:Cthe_2696 carbohydrate kinase, YjeF related + protein" + /codon_start=1 + /transl_table=11 + /product="carbohydrate kinase, YjeF related protein" + /protein_id="ACL77221.1" + /db_xref="InterPro:IPR000631" + /db_xref="InterPro:IPR004443" + /translation="MKAVTGKDMGDIDKYSIKDIGIPGIVLMENAALKVVKHINGYLT + KGPRLPIQTVIIAGKGNNAGDAFAVARHLWVEDNKIELYCLFGKETFTGDAKLNFDIL + EAMGVPIKFIGVNSSTEELCNDIEKAELVLDGIFGTGFRGEIQGIIKQVADIVNRHSR + YTISIDIASGIESATGRISESCIKADKTVTFQLPKIGQLVYPGAEYTGELAVESIGMP + GKAVDYVTETTTWVDRNFVRSLIPSRKAEYNKGNCGKVAVISGSTGMAGSGCLTAKAC + LRAGSGLVYLAVPSNLINVYQCVVPEAVVIDLKDSQGVIRGESIDTIAELLAKCDVAA + IGPGLSSEKSLYNIIRRLAEAINLPVILDADALNVIAENTDIFGAFKNQVVITPHPGE + MARLTGLDIPYIQSNRIEVAKKYAALWGVTVVLKGARTIIADKSGHIYINSTGNPGMA + TAGSGDSLTGIIASLTGQGAQTTFAAVAGVYLHGLAGDIAARSKGEYGLTAMDIVENI + PSAILETI" + gene complement(3486525..3487151) + /locus_tag="Ccel_2928" + CDS complement(3486525..3487151) + /locus_tag="Ccel_2928" + /inference="similar to AA sequence:KEGG:Cthe_2695" + /note="KEGG: cth:Cthe_2695 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77222.1" + /translation="MWNIFNKKNKVHGFDLKVLFKNDISLLTLDERWNGLFKNMEKTN + DIIETENRIKELLKEQSRLISESKEVSIKKKECMDSIIKLTTEVFDKNNKEAHTEMQE + CEKTIVAINKRIKENEERLQDIPKEIREENLLLLEYTVKQVYFSIRENQLRVTELDKQ + IAEARESLKKMIDERELLAEDYSDTYSYFHDLLGKDELQKLDEIYFSK" + gene 3487440..3488714 + /locus_tag="Ccel_2929" + CDS 3487440..3488714 + /locus_tag="Ccel_2929" + /inference="protein motif:TFAM:TIGR03026" + /note="TIGRFAM: nucleotide sugar dehydrogenase; + PFAM: UDP-glucose/GDP-mannose dehydrogenase; + 6-phosphogluconate dehydrogenase NAD-binding; + UDP-glucose/GDP-mannose dehydrogenase dimerisation; + UDP-glucose/GDP-mannose dehydrogenase; + KEGG: bat:BAS5120 UDP-N-acetyl-D-mannosamine + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="nucleotide sugar dehydrogenase" + /protein_id="ACL77223.1" + /db_xref="InterPro:IPR001732" + /db_xref="InterPro:IPR006115" + /db_xref="InterPro:IPR014026" + /db_xref="InterPro:IPR014027" + /db_xref="InterPro:IPR017476" + /translation="MIVINNKKKICIIGLGYIGLPTAAMFATHGHSIVGVDVKEEVVD + SLNQGKIIIEEPYLDIMVQAAVTSGNLRAQLTPEEADVFIISVPTPINADKTADMRFV + RSATESIVPYLREGNIIILESTSPPGTVEGLMLPILKESGLEIGTQLLVAHSPERVLP + GKILVELVENNRIVGGVTPASSKAVRDLYKTFVKGEIFLTNATTAEMCKLMENTFRDV + NIALANELAKLCEKMGINAWDVIKYSNKHPRVNLHQPGPGVGGHCLAVDPWFIVEKEP + ELAKIIKLSRMTNDSMPHHVFNRSKSILSAVDGIKKVIVLGATYKPNIDDMRESPVME + LIDLFKQDPNFDVCIYDPHIASHELICNNLVEAVSGGHLIILGVNHDEFAKIDFSKLQ + PLMAEANIFDTRNFYDRSELTAAGFNTYLLGA" + gene 3488779..3490026 + /locus_tag="Ccel_2930" + CDS 3488779..3490026 + /locus_tag="Ccel_2930" + /inference="similar to AA sequence:KEGG:BAS1576" + /note="KEGG: bat:BAS1576 TPR/glycosyl transferase + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="TPR/glycosyl transferase domain-containing + protein" + /protein_id="ACL77224.1" + /translation="MKKVLMIAHQFPPIGGSGVQRTVKFVKYLRNFDYEPIILTRDAS + NAALKDETLLSDIPKGIKVVRTNACDFAALPGIFKYFGKVVNKLLIPDSERVWQHFAR + KQALDAVKDNKIDVIYTTSAPYSDHLLGVYLKKHYPEIPLVCDFRDEWTNNPYHVRKG + LRAKIERDQEKMVLKYADCLITNTPVMLSNFLRDNPETKGKFYVIPNGYDDEDFVGME + DIKPANVRFTLTYTGLLYGKRKPDNFFEALKRAIDEGSVDKSKINVRLIGNYKVDQLQ + AVIDSYNLSDVVALMPYMKHRECLLELVKSDALLLLEPSGPGAEAFYTGKVFEYMNTK + RPILASIPERGAAAQLITDTKTGLVSDFNDIENTKKNLIHLYNCWDNGTNPINPVIEE + VKKFERKELTKALVEVLNNSFKK" + gene 3490043..3490537 + /locus_tag="Ccel_2931" + CDS 3490043..3490537 + /locus_tag="Ccel_2931" + /inference="similar to AA sequence:KEGG:PTH_2771" + /note="KEGG: pth:PTH_2771 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77225.1" + /translation="MKLIDEKGRLFGKVNIIDLVVVLLVLLLAAAVGYKVLSPKIASS + PTAQGEVTAVVKCTFRTDTVISQVKAGQQLVFGTDYVPNATIAEVKVVPSDYTTTDAQ + GRVHIEKHPNLKDLYITIKAKVNTNAPILKVGTQDLCLGKKFTVKTQTMEMDGNVEMV + TITK" + gene 3490573..3491094 + /locus_tag="Ccel_2932" + CDS 3490573..3491094 + /locus_tag="Ccel_2932" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77226.1" + /translation="MEQFTGTSVIFKAANGLTGWFKASVLFKVLSVILDWCRNSQINR + FILWYLGRNSSLKYSATYRVCSRIFGFFNRLWDKLCNFSSNCGSSSIFISFIRSNFTG + YGSFVAFSIVILFFSMGFGATSLALGTFNTMKAVLMLLGIIVSLLLLPGRKKWKACLE + NSMFWHFVQYIFD" + gene 3491121..3492497 + /locus_tag="Ccel_2933" + CDS 3491121..3492497 + /locus_tag="Ccel_2933" + /inference="protein motif:PFAM:PF04932" + /note="PFAM: O-antigen polymerase; + KEGG: csc:Csac_2364 O-antigen polymerase" + /codon_start=1 + /transl_table=11 + /product="O-antigen polymerase" + /protein_id="ACL77227.1" + /db_xref="InterPro:IPR007016" + /translation="MNKKTAVILSILGLLAGVCGAFAPTFLLIAFIAGVIFTAAMMFD + YSKFLYVLGFYVLIDYVLRYVISSALLASFWDELLFIFALCLWLYKWVVYRKQDGYVA + TPLDIPLVFFVVISICLLLVNSPVMAIGIAGFRQVIQQMLWYFIVAQLVTSSRNIRWF + LYIMVFIGGLLGLHGIYQYVTHAEMPSYWVDRLESGITTRVFSIIGSPNILGSLMVLL + IPVAISFVFSERKIFKKIIFTGITLAMSATLIFTSSRSAWIGFVVAMGVYFWLKDKRL + ILLLALLVVAAYFAVPTIAHRVNYLLSPQYMISSAAGGRIARWSIGIAALQQHPWFGL + GLGQFGGAVAQNFKIPGAFYVDSYFLKIAVEMGIVGLTSFCILIYNALAWGIRAVKRT + ADRQSLSMAQGVFAGMVGIVVPNFVENVFEVPMMTAYFWMFAAVLIALGFTLPNKGLN + RLNVGSIR" + gene complement(3492833..3494179) + /locus_tag="Ccel_2934" + CDS complement(3492833..3494179) + /locus_tag="Ccel_2934" + /inference="protein motif:PFAM:PF01098" + /note="PFAM: cell cycle protein; + KEGG: aoe:Clos_2351 cell division membrane protein-like + protein" + /codon_start=1 + /transl_table=11 + /product="cell cycle protein" + /protein_id="ACL77228.1" + /db_xref="InterPro:IPR001182" + /translation="MNQCVANFIDRVLGQVKYKKAHRIIQEELQNHIEELTETHISDG + MSEDEAVKKAVRKMGDPIAIGKQLHNTHKPKTEWSIIILLGSIVLFGLYIMFQYSQIT + THSFNFKRQIIFVVAGAFLTLILYFVDFVGFEKYSLPIYYSVCLLLLVITFFGSDTYG + RAAIVLGGFSITPSFVAIPVLLISYSGLIRRWCDGTPRNLLKLVLSSLLPLILIFMEP + SLMFSCILGAGFAIMVTYGVVSKSFKGNRKKTLFILYGGLISFILITLLYTYIYVPYR + FKVLTMFANPWRDPQGSGWMNIMLHKIQSSSQFIGMSKEMMSSDTKELTLPCSETDCV + FTFVVGQFGWLFGVVLLGLLGLIIIRLFMASNKVRNEYGKLLGVGICCVFSIQVIIHI + LSNLNLFPLTGISLPFISYGGQNYLLNMALIGMLLGIYRRKDISFKQEEKSIESLN" + gene complement(3494160..3494510) + /locus_tag="Ccel_2935" + CDS complement(3494160..3494510) + /locus_tag="Ccel_2935" + /inference="protein motif:TFAM:TIGR03433" + /note="TIGRFAM: transcriptional regulator, PadR-family; + PFAM: transcriptional regulator PadR family protein; + KEGG: aoe:Clos_2352 PadR-like family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, PadR-like family" + /protein_id="ACL77229.1" + /db_xref="InterPro:IPR005149" + /db_xref="InterPro:IPR017799" + /translation="MKIDKELLKGSTTMLILKLLEKEDMYGYQMTRELELRSDNTFTL + KEGTLYPILHSLESDGMIEAYWEETDSARKRKYYRITVKGRKLLEDKQKEWSKYADAV + KKVLGGGEVEPMCR" + gene complement(3494665..3496128) + /locus_tag="Ccel_2936" + CDS complement(3494665..3496128) + /locus_tag="Ccel_2936" + /inference="similar to AA sequence:KEGG:Csac_0270" + /note="KEGG: csc:Csac_0270 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77230.1" + /translation="MKKTKIKDIIFYIIVFGAIVLLSAIALTAAFKSGTSTLKLPFFA + GIVYFIGAGIGLFIMYRLNILAKLNKAVFVMLLVLAAIVPRLIWNLYIQTQPFSDFLH + LYNYGVNASQGDFKGFVDFYAVFPFKIGFGMILAGLFSIFGSGLWTIKIFNILFSLTL + VFIIYAGGTMLYGEKAGRVASLLCALWPAQIMYTSVIASEHVFLVLFTGAVLLTLYFI + KKYTYKNHGFWNGNLMVLGAGFITALAQLIRPMAMIMLPVFAVFILLYKRYRADSLTS + LALSIKSVVLFVAVYFAVVNLINLPVQKVTGVDITKSDSGFNLMIGTNSKANGMFNNE + DFSLIKKNNFNFEKVQKEAKDIAFSRIKNDPVGFAKLALKKFEIQWGNENYGYYWSTI + SAQNSTAENTIKSHPRIFYAVSQVFYILIILMAVCTCFYTLKEKRYDSLIILMIFGGL + LLSYTFLEVQSRYHMPVIPLLIVFGTGFLEAGKRYEI" + gene 3496268..3497110 + /locus_tag="Ccel_2937" + CDS 3496268..3497110 + /locus_tag="Ccel_2937" + /inference="protein motif:PFAM:PF00293" + /note="PFAM: NUDIX hydrolase; NADH pyrophosphatase-like; + Zinc ribbon NADH pyrophosphatase; + KEGG: mma:MM_2542 phosphohydrolase" + /codon_start=1 + /transl_table=11 + /product="NUDIX hydrolase" + /protein_id="ACL77231.1" + /db_xref="InterPro:IPR000086" + /db_xref="InterPro:IPR015375" + /db_xref="InterPro:IPR015376" + /translation="MHTQNIYKNYEPAVTAPDKDYKCGYWFIFCSNKLLIVNNENEAK + IPQYNELSELSQVLTSPLYLGRFYGLPAYCIGLADSTQAPSGMSFVDLRSTFGVLDEA + SFLLASKAVQVVAWEQTHRFCGKCGSLTQDLSGERAKVCPKCGFISYPRICPAVITAV + FKENKILLAHARSFKGDIHSLIAGFVEAGETLEEAVEREIMEEISIKVKNIKYWGSQP + WPYPNSLMLGFTAEYEGGEINVDGVEISHAHWYDVENLPELPPKVSIARKIIDWYTME + HSSS" + gene complement(3497176..3497613) + /locus_tag="Ccel_2938" + CDS complement(3497176..3497613) + /locus_tag="Ccel_2938" + /inference="protein motif:PFAM:PF00011" + /note="PFAM: heat shock protein Hsp20; + KEGG: cbe:Cbei_4123 heat shock protein HSP20" + /codon_start=1 + /transl_table=11 + /product="heat shock protein Hsp20" + /protein_id="ACL77232.1" + /db_xref="InterPro:IPR002068" + /translation="MFGIVPFRNHKLQERGSLFDIENMFNSLFNDSFIGFTGGNPIRA + DIKENDKEFIVEAEIPGVTKEDIKLDLRDDTLTIAVEQNQESNEERDNYIRKERRYGS + FSRSFYVENVKNEDVSAKYENGILTIVLPKSETKKVKNRIEIQ" + gene complement(3497781..3499349) + /locus_tag="Ccel_2939" + CDS complement(3497781..3499349) + /locus_tag="Ccel_2939" + /inference="protein motif:TFAM:TIGR02900" + /note="TIGRFAM: stage V sporulation protein B; + PFAM: multi antimicrobial extrusion protein MatE; + polysaccharide biosynthesis protein; virulence factor MVIN + family protein; + KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein" + /codon_start=1 + /transl_table=11 + /product="stage V sporulation protein B" + /protein_id="ACL77233.1" + /db_xref="InterPro:IPR002528" + /db_xref="InterPro:IPR002797" + /db_xref="InterPro:IPR004268" + /db_xref="InterPro:IPR014249" + /translation="MTKKTFITGAIILMAAGLVTRIIGFVYRIYLSNLIGAEGMGVYQ + LIVPLYALIILTLTSGVSIAVSKMVAEELAKGNAVNIKRISKVGLFAVFVTSVFVSLV + LYFNIDFIVNVLLKDSRTYFSVWILLPCIPFIAAASAYKGYFYGIQEVTPTAVSQIVE + QLVKIVIVLVFASQFLEAGLEYACALATLGMALGEMSNLFVLAVYYRYKKYPHTIAKN + NKGRTRKRELVKSILNCAVPISFNRFIMSVMQAIEVILIPRRLLVGGLNYIQCMEEYG + KLAGMAMPLIFFPALVTTSLATTLVPAISESMSLKNYSRVNFRISKSIQITMVVGFIF + MALFACYPNKISDMVYPGQNVGSTMFLLSFTCIFIYLQQILTGIMNGLGKQGLLLTNS + IIGSVIRILCVYYLIPVYGIPAYVFGIIISYLIFCILNFIIITKNTGMMIDLRRWVVL + PAGVTAILVLFSKYIYSFFNFMNLSFAWQTLFAVCAYIIIAVFLMALVGVIDWRELLQ + LLGIKNKRVRNLKR" + gene 3499733..3500530 + /locus_tag="Ccel_2940" + CDS 3499733..3500530 + /locus_tag="Ccel_2940" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; + KEGG: dsy:DSY2087 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL77234.1" + /db_xref="InterPro:IPR000064" + /translation="MINLNKRFVSSFIVLSLCAVTAVPIYNLTAIKEEKKVFPEIELN + MSETEKTVKSERQLLYTSLNYSAVEATKTEPTQAVTKAAPAKETASSVKKTTTSKTKT + ATTSTIKKTSTVKKAAVSQTTRKTVTKPSTSRSNTSTAPATTSKASVVISTAKKYIGV + PYVWGGTTPSGFDCSGYIKYVFAKHGISLPRTAAEQYNAGSYVSKANLKAGDLVFFTT + YKPGPSHLGIYLGNGSFIHASSSQGVIISSLSNSYFAERYIGARRII" + gene 3500650..3501402 + /locus_tag="Ccel_2941" + CDS 3500650..3501402 + /locus_tag="Ccel_2941" + /inference="protein motif:PFAM:PF01520" + /note="PFAM: cell wall hydrolase/autolysin; + KEGG: cth:Cthe_1037 cell wall hydrolase/autolysin" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase/autolysin" + /protein_id="ACL77235.1" + /db_xref="InterPro:IPR002508" + /translation="MKLDKLIEKLSPRLSHRSLIAMIVILSVAIIALLGIIFRNDVIL + PLSSLTSHSEDSNVASMPPLVVIDPGHGGSEPGAGSGSINEKEITLAISLEVEKILNE + KNIDNILTRSNDTAVSLEDRAKLANEKKSTLFISIHNNSFTDPASHGVLTTYNPYSPI + GKSNAEIMQSKLKTLGMYNRKIVPRPNLYVLRHTKMPSLLLEIGFISNKNDLKLLTSS + DFQKKCAIQIVKGIEEILETNATASSESSSEV" + gene complement(3501368..3502330) + /locus_tag="Ccel_2942" + CDS complement(3501368..3502330) + /locus_tag="Ccel_2942" + /inference="protein motif:TFAM:TIGR00737" + /note="TIGRFAM: TIM-barrel protein, nifR3 family; + PFAM: dihydrouridine synthase DuS; + KEGG: cth:Cthe_2685 nifR3 family TIM-barrel protein" + /codon_start=1 + /transl_table=11 + /product="TIM-barrel protein, nifR3 family" + /protein_id="ACL77236.1" + /db_xref="InterPro:IPR001269" + /db_xref="InterPro:IPR004652" + /translation="MKIGNVELKNNIFLAPMAGVTDMPFRILCKEQECGLVYTEMVSA + KGMHYDDDKSNKLTLMHEKERPGAVQIFGSDPKIMAEVAEKLNKSDAAIIDINMGCPA + PKITKNGEGSALMKNPELVAEIIKSVVSASQKPVTVKIRKGWDDSTINAIEIARIAEK + NGARAIAVHGRTREQYYSGKADWDIIRQVKEAVSIPVIGNGDVTGPKEAQKLLEETRC + DAIMVGRGAQGNPWIFKKIVKFLEDGTIISDPSPKEKIETIIRHMDMLIDLKGEKTGI + LEMRSHIAWYIKGMRDAAYTKQKIFQMKGKEEIITLLRSFLMRQ" + gene complement(3502987..3503454) + /locus_tag="Ccel_2943" + CDS complement(3502987..3503454) + /locus_tag="Ccel_2943" + /inference="protein motif:TFAM:TIGR01593" + /note="TIGRFAM: toxin secretion/phage lysis holin; + PFAM: Holin toxin secretion/phage lysis; + KEGG: cpy:Cphy_0798 toxin secretion/phage lysis holin" + /codon_start=1 + /transl_table=11 + /product="toxin secretion/phage lysis holin" + /protein_id="ACL77237.1" + /db_xref="InterPro:IPR006480" + /translation="MDNINAIKASIVTVFATISACLGWFGWLVVIFVGSLLSDWITGT + LVACKNGQWSSKASREGIWHKFGSIIAVLVAAVVDIVIGMVINNIPSVTLPFTYTVLL + CPIVLVWYIVGELGSIIENAGLMGAPVPSFLQKMIVAFKNTVDDAGNKIVDNK" + gene complement(3503481..3504182) + /locus_tag="Ccel_2944" + CDS complement(3503481..3504182) + /locus_tag="Ccel_2944" + /inference="protein motif:PFAM:PF02557" + /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /codon_start=1 + /transl_table=11 + /product="peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /protein_id="ACL77238.1" + /db_xref="InterPro:IPR003709" + /translation="MPSVKFKYQDERFVYQKLIDAVNILCTAKGKDCLCTSGYRSVEK + QKIINAQSLEQRKSQGAYQLANGAVYTKDGKCWAAAYGKSNHCYCIAMDISDEWFKAL + ANAELKKYGLVKPISYESWHVQLLEHQGISQAKKEQIRDSVLKGKVDDDMTVKEFQTI + TGLQADGIVGTNTKNKAKEMLQVCQEILGQNYKNATEAINGCMTKPSTWLNLMSKTKY + FDSFVMNIVNKLSGK" + gene complement(3504314..3504814) + /locus_tag="Ccel_2945" + CDS complement(3504314..3504814) + /locus_tag="Ccel_2945" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="transcriptional modulator of MazE/toxin, MazF" + /protein_id="ACL77239.1" + /translation="MPCPIKPQTPTSIKEEHLEKGCVHWFDNTRNSDTAISSTKARPC + VIISQYRASSQRVTVSPITGREHCEETPNGQLKYPCNAPIFQTDNSFLDKDSVVLLDQ + VYTIKKSDLCEEWYMGNLKDTYEVDKAIIHNYDLYESTFNIYKELFEQLKDMAEIIHT + SNYTRT" + gene complement(3504818..3505066) + /locus_tag="Ccel_2946" + CDS complement(3504818..3505066) + /locus_tag="Ccel_2946" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77240.1" + /translation="MKKHGKKRNSSAKDCKGDEDMNNVLYLSQHKKEQRSFDFLRMFV + DSKYRKEMYKHLDKDYVESKEERAIFDEWDEYQRREDD" + gene complement(3505395..3505511) + /locus_tag="Ccel_2947" + CDS complement(3505395..3505511) + /locus_tag="Ccel_2947" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77241.1" + /translation="MFERLNYLHKANELTEKQIDIAVSKGWITAEEKMKIIG" + gene complement(3505516..3505911) + /locus_tag="Ccel_2948" + CDS complement(3505516..3505911) + /locus_tag="Ccel_2948" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77242.1" + /translation="MQEENLTISIWDRESPINGVSAEEILSYCDDIAKEPVVLLFSDP + DTGHVNQIQFPNTLVNILNTHDSFKPVNETDPIVIGHLYLQYLYLINHTEPPKSELQI + LQETVDTLVADNLNLQAQIDTLITSNLQG" + gene complement(3506177..3506989) + /locus_tag="Ccel_2949" + CDS complement(3506177..3506989) + /locus_tag="Ccel_2949" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: afl:Aflv_2378 transposase" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77243.1" + /db_xref="InterPro:IPR001584" + /translation="MCRLLNISRSGYYAWVKRPESLRKKRNTELLEKIRRIHKVSRET + YGSPRVTNALKNEGIKCGKNRIAKLMKENNIAAKTRKKFKATTNSNHNYPVADNILNQ + DFTAYKPNQIWVADITYIPTDEGWLYLAAIIDLYNRKVVGWAMDSTMTKQLCIDALKQ + AIGRQRHPKGVIHHSDRGVQYASKEYQKVLNSNGFTASMSRKGNCYDNACMESFFGTL + KTELIYLTRFKTRAEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA" + gene complement(3507037..3507321) + /locus_tag="Ccel_2950" + CDS complement(3507037..3507321) + /locus_tag="Ccel_2950" + /inference="protein motif:PFAM:PF01527" + /note="PFAM: transposase IS3/IS911 family protein; + KEGG: drm:Dred_1014 transposase IS3/IS911 family protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS3/IS911 family protein" + /protein_id="ACL77244.1" + /db_xref="InterPro:IPR002514" + /translation="MKRYDSNFKEQAVRLVTEQGKSVSSVANDIGIHENTLYKWIDQY + KTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK" + gene complement(3507346..3507504) + /locus_tag="Ccel_2951" + CDS complement(3507346..3507504) + /locus_tag="Ccel_2951" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_0914 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77245.1" + /translation="MAITLPNVQIQFKQLANSFVQRSERGIVVLIIKDDTNKMTLPRF + DGHTEWLV" + gene complement(3507509..3507967) + /locus_tag="Ccel_2952" + CDS complement(3507509..3507967) + /locus_tag="Ccel_2952" + /inference="similar to AA sequence:KEGG:Cbei_0913" + /note="KEGG: cbe:Cbei_0913 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77246.1" + /translation="MVTLIDINKAITSKIRQAIADTEYSDVPIPAIDVTESIIRPSIK + FSIENSSNGKFNANCRQKTLICRIYFFAKDRTKYNLDNIKMQDILENAFFDGITIKEG + FFIPIDNVESEVTDGVLICSFDMQTIESLPDDSESSETMEDLILNLGKGD" + gene complement(3507977..3508396) + /locus_tag="Ccel_2953" + CDS complement(3507977..3508396) + /locus_tag="Ccel_2953" + /inference="similar to AA sequence:KEGG:Amet_2418" + /note="KEGG: amt:Amet_2418 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77247.1" + /translation="MSDGFDIKELTDFEKKLIDLATTKMPKESKKFMRDEGTKLKKKT + IAKAKQKVKKDSGNYQKSIKRGKVYKYEGDLSVRAYSGNPVAHLIENGHRIVDKNGVE + HGFKEGEHVFEEAQKEFEQQYYSDVQKFIDDMLDKGL" + gene complement(3508397..3508729) + /locus_tag="Ccel_2954" + CDS complement(3508397..3508729) + /locus_tag="Ccel_2954" + /inference="protein motif:TFAM:TIGR01563" + /note="TIGRFAM: phage head-tail adaptor; + KEGG: amt:Amet_2417 phage head-tail adaptor, putative" + /codon_start=1 + /transl_table=11 + /product="phage head-tail adaptor" + /protein_id="ACL77248.1" + /db_xref="InterPro:IPR013045" + /translation="MNLSSRLKNRIDVYGKVPFINELGEDDFKYGKIKSVWAEITVQK + GALKNSQGNTTYADIDHKIVVRTGAIPDLANDMYFMYQGQRYDIKYFNPNYKYQDSIE + IFVSLVVS" + gene complement(3508726..3509007) + /locus_tag="Ccel_2955" + CDS complement(3508726..3509007) + /locus_tag="Ccel_2955" + /inference="protein motif:TFAM:TIGR01560" + /note="TIGRFAM: uncharacterized phage protein (possible + DNA packaging); + KEGG: cbk:CLL_A0947 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="uncharacterized phage protein" + /protein_id="ACL77249.1" + /db_xref="InterPro:IPR006450" + /translation="MTLDEVRSYLRIDTDVEDNFLNELIDSSQIYIDSCTGEGYKSDE + KAAKLASLLQKKLISDLYENRSTTVPDKTKQDKIVTTILDKLSSYEVVL" + gene complement(3509057..3510019) + /locus_tag="Ccel_2956" + CDS complement(3509057..3510019) + /locus_tag="Ccel_2956" + /inference="protein motif:TFAM:TIGR01554" + /note="TIGRFAM: phage major capsid protein, HK97 family; + PFAM: major capsid protein HK97; + KEGG: cbk:CLL_A0946 phage major capsid protein, HK97 + family" + /codon_start=1 + /transl_table=11 + /product="phage major capsid protein, HK97 family" + /protein_id="ACL77250.1" + /db_xref="InterPro:IPR006444" + /translation="MKLAEERETDEREALKNQKNDEERGKNNIEKVNEFRAIVKHVMG + KDTTPEERANITTVDNSAVIPKQFVNQVIEIQKGYGSLKQLCDVIPVTKNEGTIPVID + LDQNEMAEVAEGADIVDGTFVSTDVPFKCAKVGLIQSLTSETVEDAEVEMENLVKKNF + TNIATAKENTKILKVITDNATVIEGAVDYTDLENAIDGSLPSVKAGLTTITNVSGYVK + LKNWKDAQKRPLNLITVDANGVEYFHGHAIVHVEDAMLPATVGKNVFYIANMKEAVKY + CDRNAITVARSSEAGFTDDTIKLRILERFIPVKGSARSIKKIEF" + gene complement(3510049..3510144) + /locus_tag="Ccel_2957" + CDS complement(3510049..3510144) + /locus_tag="Ccel_2957" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77251.1" + /translation="MNINELRSEITTKTEEMGKKIEARDVMEQKH" + gene complement(3510191..3510802) + /locus_tag="Ccel_2958" + CDS complement(3510191..3510802) + /locus_tag="Ccel_2958" + /inference="protein motif:TFAM:TIGR01543" + /note="TIGRFAM: phage prohead protease, HK97 family; + PFAM: peptidase U35 phage prohead HK97; + KEGG: cpe:CPE1121 phage phi-C31 GP35-like protein" + /codon_start=1 + /transl_table=11 + /product="phage prohead protease, HK97 family" + /protein_id="ACL77252.1" + /db_xref="InterPro:IPR006433" + /translation="METREFRKIDQYEIRQITDDNSVEITGYIAKFDSPTELWEGYWE + QIDRNAFKDTLSDGHNIFLLYHHDWSKPLASTKTGTLLLEIDNIGLRFNATINSNLTY + GKDAIELIRQRLIEGCSFGFYCKEEDVHYNSVDNTVIRTLLKVELYEGSILCIPQYED + TSVDVFARAREIVTEEKLKIQQEKELSELKTDLELLKIGNELL" + gene complement(3510792..3512039) + /locus_tag="Ccel_2959" + CDS complement(3510792..3512039) + /locus_tag="Ccel_2959" + /inference="protein motif:TFAM:TIGR01537" + /note="TIGRFAM: phage portal protein, HK97 family; + PFAM: portal protein; + KEGG: cbk:CLL_A0944 phage portal protein, HK97 family" + /codon_start=1 + /transl_table=11 + /product="phage portal protein, HK97 family" + /protein_id="ACL77253.1" + /db_xref="InterPro:IPR006427" + /db_xref="InterPro:IPR006944" + /translation="MIFDKIEKRENTPINDWKDIYSFEKGYEIIPYDRSLKESTYYSA + IKIISKSVAKCSLQVKLESEKGEDLAKNHYLFDKLRLRFNSYMSSIDAMKAFVAISKH + EGISGLFINRDVKGTIEGLYPVKITQITIDNAGIIKGTKSNKVLYDFECVEGETGSCF + DKDIIILRDFTLDGIKTNATRKILSESLDTSVKSQDYLNTLFTNGLTNKVVVQLSSDI + KDEKEIKKMQDKFNRIYSSNGKIFTVPAGYSIDALNLSLADAQYEQLRRLSKEEIACM + MGVPLSKLGFVKENAKSEEQDNLKFLSDTLLIIFEAIEQEMDWKLLTEKERKQGYKIR + FNINVLLRTDSKTQSEVINSYVNNGVYDLDYARGILGVPKLGGEPIITLPSGQILLKD + LLSGNVSYLKNKSGEGGDNLNGN" + gene complement(3512258..3513925) + /locus_tag="Ccel_2960" + CDS complement(3512258..3513925) + /locus_tag="Ccel_2960" + /inference="protein motif:PFAM:PF03354" + /note="PFAM: Terminase; + KEGG: spa:M6_Spy1141 terminase large subunit" + /codon_start=1 + /transl_table=11 + /product="Terminase" + /protein_id="ACL77254.1" + /db_xref="InterPro:IPR005021" + /translation="MNPILKKLLEENKIKQTLDLEPFLIGMQEKWDDENYYYDVNEAR + KIFKYISLLKNDKGTSRRFIILKFQFEIITEILCVKDRSTNLRKFREGHINIDRKNSK + SFLIGIILSYLFFCQKKIFGALFIITGNTTKQATELYNTFKTFVEGNKALRKKCKILD + STKTIIRKDNKNKLIVLSNDGGGADSYAVYSCALDEIHEYARDEIYGKLKTGSGIWDD + PLTFTITTSSSGEDPNNLEMQLYTMCKKLEEDDSMEKDKTFYYKIYEAEPNCEVDDYN + QWFKANPALGDFRKPDDIINLANRVKLMPLQENMFRRMFLNQHVATDHIKNAINMDLW + YECVKDINIDELKGCKCWGGLDLSSQHDITAFVLIFFNEDTQKYIVVPYLFTAKETLI + EREEKDKNPYSTWVRQKFLLSTKGRYVSFEDVLEKIHELDKEFDIQEIGFDRFGSPTI + MNRLEDVWNVVPLGQGTGTMTGAIRDFENLLIDKKLIIANNDVLHFMAKNCIACYNEN + MDVKYSKKKSKFVIDGIIAMLMGLLLAIEENGIGHYNAMQELEKTDW" + gene complement(3514083..3515129) + /locus_tag="Ccel_2961" + CDS complement(3514083..3515129) + /locus_tag="Ccel_2961" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77255.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3515217..3517409) + /locus_tag="Ccel_2962" + CDS complement(3515217..3517409) + /locus_tag="Ccel_2962" + /inference="similar to AA sequence:KEGG:Amet_2852" + /note="KEGG: amt:Amet_2852 phage related protein" + /codon_start=1 + /transl_table=11 + /product="phage related protein" + /protein_id="ACL77256.1" + /db_xref="InterPro:IPR000235" + /translation="MENKNIYIRSLEASDIYSNIYRSQDLQEKYVGMLPFSLLSQKLI + SEGMVIQEKKNGKKYITDDIINVSFDKKVKCADEIIKDTNNKIIELMDKAMPQDEFEK + LNSLMISEGVDIANKYKVKDFFKKKKIKKTQKKSYNTMAYIISLTEFVSFIKEDMVEH + PESWNEIKNIEVSDNNKNIRTILYEDGFTLTKTIKKRGQERKTVNTTYCVLGRSSSKS + RTGNVLFIKQSLKKPILDWMRMKLPINKDSKIDFPALLSYEFLVGSSAERFITIPTKS + MLIVSDVKSVFTTKCNVTKKDSTTGHLYSEVEENWEIESSLFDGECLLDAESDYFKEN + ESMLLLRQHMFKSAGFATYIQKYLIEYHKKNIKGIEYEDWQILDMFQNRVFAKDIKII + FCPTSLKALKFSKLIGSDEDMYKYWQQKVQGEECIFAVVKHEKESKRGYDKDGNILQQ + MSYQMIGSIDLSPDNIQSLLEIEKGYISDLKNNTESYIKYLQSEANVMNYNNMMIDLY + KHNNLVEKTGMFKDYRTDEISRYGKYVKSAKLRQKGDYCILLGNPLCLLKHAVGDLPV + VDGIIDESYKDVLEDNEIYTTLFLEHGKEYCMFRNPHNSPSNINVGILKTDVQLLKDY + FKLSKNIVVCNAIKYPIQAILNSCDYDSDSAVIFDFGTLQSEIKAKVIGKYFPVEKDD + KSIGMEKTTYPINNTGMSHIDTKLSQSQRLIGEVTNVGALILSNIYNC" + gene complement(3517496..3518893) + /locus_tag="Ccel_2963" + CDS complement(3517496..3518893) + /locus_tag="Ccel_2963" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpe:CPE1107 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77257.1" + /translation="MEENSNKIVLEDSYIMIPNIVVQNSTTINSYIQLYGRKSLAYIR + QMLMLQNKKSQVNISINFLLKTLGIDKNIYRERKYLNEFISALVKDKLIEIISINNIP + CNDINNLNFDDYIVFKLNIYEYNENGQVQNYFQLNDSEWNKLINYSGDLNKYNLLNLF + CNLKSRMKRSSSDIHISERVPEVCYPTYETIKEDIFIESDKTLALYITTLEEMDLIRK + DCAGDMIFKLEGQKPIRRKANFTYTLFRPGWEIELENSISQYKSNKRKDGWSFISKVK + EVSADEKRSITQKIHMLEKLQSDGKSLTQSQKKELLKLKRQREKWQYDDNVDVRKLEE + EKLKKDNPDKKLSEVYEEMGYEAKADRAYEDEETIQDATDNVNNTWGESNPMEDYTMF + EYPIEEIIEMPTEDEIIKVKSRGRINISTQKKSSLTKHIRSKQDPEGFDSDDLIDDQM + DNESLDYFKDKASGL" + gene complement(3519517..3520089) + /locus_tag="Ccel_2964" + CDS complement(3519517..3520089) + /locus_tag="Ccel_2964" + /inference="similar to AA sequence:KEGG:CTC01564" + /note="KEGG: ctc:CTC01564 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77258.1" + /translation="MDQLQPIIFYLLKYYTYYDEDNFRELYVKNDLKGMFFAIHKRDV + IQAYKDVFQYLPDDIKYKAFFNVYTRAEYNFKALTIKILDALKKLRPDSVIQELSKYA + DDKGYITIYRGECTKSTPVNKALSWSLDKDRAEWFARRFLFGDNVGYVYSAKVKINDV + IGYYNGRDESEVIVRYKYLMLISSDEFKIA" + gene complement(3520764..3521372) + /locus_tag="Ccel_2965" + CDS complement(3520764..3521372) + /locus_tag="Ccel_2965" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77259.1" + /translation="MLNTNRNVNEETNTRYYIMDESSQFVHADSIKKIGEEYTYTSYP + RPERAYPSMDAAQKALDNLKLHNKCGNLNHVFTIKSEPITKPTCFVIKDQNNRFVDAN + CIFLLPNDDSKQLEWWLTSFSTEINSILRYPTKEYAQIVLEKLNKLKDIAGFTDAKFH + IEEFTKCSNTPAKMSIQTILVPKGKKMAHRQLYRETVREFIY" + gene 3521531..3521746 + /locus_tag="Ccel_2966" + CDS 3521531..3521746 + /locus_tag="Ccel_2966" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77260.1" + /translation="MNIRNEIKSYIASSGWTLTDIVKIMNDKYELGTTTQNISNKLTR + GTIKYTECKIIAQIIGYSISWEKEKEG" + gene 3521869..3523473 + /locus_tag="Ccel_2967" + CDS 3521869..3523473 + /locus_tag="Ccel_2967" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbl:CLK_0861 type I restriction enzyme R + protein n terminus (hsdr_n)" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77261.1" + /translation="MDISEFKKYLADTKIILRDLGYPNIKNISEEDTKIKIIKPLLYL + LGYDESSMRHEEQDGLSQNRIDISYFYSKAFGSIDYKIPIEAKNIYCPLNRNDTISFL + KKYMIDKYPSIGILTNGNIYKLFVKPFNNYYNELELYSVNIDIFSIDLTNDNSICEIY + NSICLFSTDFIINSPKLIYIKVLSDFLSYKKNHCKSTNPYDTLKAYKEEIECFINFVI + NKYPDLNFSEITNFHVREFGSYRLSLEKRKGFINDSNRLKTVLNYISSFLKFCNREKA + FGYNNPEINDIAIQKLAEEIFIKNRGINPSTSSIENSPLTLDEIKQIISYCKERIISS + KPKSLEYYYVALRNYILIILPLFLGWKKNEIINIKWKDINLSENYIITPSNKYKLNSF + LINELKNYKLVYDKYYKENTFRVNDKYLFLTSRKYYGKKGMNVVGVRTLNYNLRITLK + NSGLPEERINKITIESLKNTNIALSLNEIKNTFAIILNTVKPKTLVYDLKNMLHDLGY + DVDSLIYSSIDYHPLNKLEPILGTEY" + gene 3523877..3524215 + /locus_tag="Ccel_2968" + CDS 3523877..3524215 + /locus_tag="Ccel_2968" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_0517 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77262.1" + /translation="MDKITDTKTEFRLKQWTQIVQTCQASGMTAVSWCNQNNVNIKSY + YYWLRRIRTLTIENGPLELQSKGQQIVPVSFRQTAAVTIHINSVSIDIPDGTSKDTIA + AVLSALKTIC" + gene 3524209..3524565 + /locus_tag="Ccel_2969" + CDS 3524209..3524565 + /locus_tag="Ccel_2969" + /inference="protein motif:PFAM:PF05717" + /note="PFAM: IS66 Orf2 family protein; + KEGG: cth:Cthe_0516 IS66 Orf2 like" + /codon_start=1 + /transl_table=11 + /product="IS66 Orf2 family protein" + /protein_id="ACL77263.1" + /db_xref="InterPro:IPR008878" + /translation="MLGDISKAEDIYIVCGYSDMRKSIDGFAAIIKGTFGMDPFSPSL + FLFCGKRRDRLKALYWEGDGFVLLYKRLENGSFKWPRTPEQARRLTMQEFRWLMDGLA + IDQPKAIREAKQGDIY" + gene 3524641..3526230 + /locus_tag="Ccel_2970" + CDS 3524641..3526230 + /locus_tag="Ccel_2970" + /inference="protein motif:PFAM:PF03050" + /note="PFAM: transposase IS66; + KEGG: cth:Cthe_0515 transposase IS66" + /codon_start=1 + /transl_table=11 + /product="transposase IS66" + /protein_id="ACL77264.1" + /db_xref="InterPro:IPR004291" + /translation="MQKIDITGLSPNQIEYVSSLEKTVENQQVRIEQLTELLIKSQKA + LYGQSSEKRRYVFDEDSGQLSLFNEAEVEAGNKAEEPTVQTIVAAHTRKPKRTKEELA + ETVPVVEVVCDLDKDKRTCNICNTDLRYLGKEYVRDELEIIPAQVRILRYIRLNYVCK + ECEKETCEANIVKAPVPKPVMKRSLASASTVAYVMYQKYANGMPLYRQEKDWANQGVK + LSRATLANWIIRPSHEWLEPMYDAIKKNLVTEPLIHADETVLQVLKEPGRRATTESRM + WVYTSGQSLTPAVLFEYQPTRSGQHARRFLEGFSGYLQTDGYSGYNAVPNVIHCGCWA + HLQRKFEEAIPNGADNKSSKAAIGYDYCNRLFAMEKKWIELSSENRHQERRKNAKPLL + DEFWQWVSHLNPLQNSNLGKAVTYALNQKETLINFMLDGCIEISNNRAENAIRPYVTG + RKNWLFADTTRGAKASAIVYSMIESAKANQLNPYMYLVYLLSKLPDLKELTQKSLTPY + LPWSPELPCWCHKDSNKAPQD" + gene complement(3526361..3526501) + /locus_tag="Ccel_2971" + CDS complement(3526361..3526501) + /locus_tag="Ccel_2971" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77265.1" + /translation="MEYLEVYKHPRDFAKYRIGSGGKHVFICRLNKAYDGLVLITDEN + EN" + gene complement(3526664..3527710) + /locus_tag="Ccel_2972" + CDS complement(3526664..3527710) + /locus_tag="Ccel_2972" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77266.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3527790..3527909) + /locus_tag="Ccel_2973" + CDS complement(3527790..3527909) + /locus_tag="Ccel_2973" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77267.1" + /translation="MLKFEYEEGIKEDEKAIFKNLEILANNIPDITIHKLLEN" + gene complement(3527949..3528818) + /locus_tag="Ccel_2974" + CDS complement(3527949..3528818) + /locus_tag="Ccel_2974" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cno:NT01CX_0032 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77268.1" + /translation="MYKIRLFFFLILIIFMFSGCSLGESIQTIKQENTNLQAQVTSLK + QENQSLKSQLNEIKNGAKNLYNNIQNYYKDKSYDKAKEEINNLLQKHPDSEEAKKAKQ + LLSTINIEIKNDAEKAQLIKKQKKDADKKRLAESTKKMRKQYDEVQEVTWYFDKSSPQ + YANVNSFYVYIGTKKDSLPGLRLKIQYTADDWIFINKYIFKVDNKTFEIDTGDFGVTR + DNNGDGIWELYDVELSNENYDLIKAIISSKKTIIRHQGDEHYSDRVITSTEKQGLKNV + LDAYEALGGKFDF" + gene 3528945..3529757 + /locus_tag="Ccel_2975" + CDS 3528945..3529757 + /locus_tag="Ccel_2975" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77269.1" + /translation="MFNFISKLFSRQKNTITDNPYSKPSVKIEEYIAKPNIFHDLNYI + PQDETFKIDFINDRNNTVKNATVVFPAKNQYIIINDQKSYIDAYFVKYKGKSSDNIYH + KFATPDYMFWVKPEDYERFKTVLIYRHNIKVKNKQAMAEFNKVNATKSFNYDIISNDI + YTCFIAYKSGMCDAIGKWENFYKIEEALSNICKQNNGRYYKTENAKAKFAIIFNPSYR + IFTTVTELKNKGFKVTTFEDVVDYFKLNNLWDTNKIRTYAKENQEYMQNHYN" + gene complement(3529814..3530119) + /locus_tag="Ccel_2976" + CDS complement(3529814..3530119) + /locus_tag="Ccel_2976" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77270.1" + /translation="MPNIIQILSSEVNSLAIEGFMIINLMALIGLILNFFGTVLIFKP + IIYKSPNTFLFNNKNKQVDEFFKEREFNVYGFILIMIGFFAQAFSVFCNILLNIKKN" + gene 3530165..3531211 + /locus_tag="Ccel_2977" + CDS 3530165..3531211 + /locus_tag="Ccel_2977" + /inference="protein motif:PFAM:PF00665" + /note="PFAM: Integrase catalytic region; + KEGG: lpf:lpl2033 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Integrase catalytic region" + /protein_id="ACL77271.1" + /db_xref="InterPro:IPR001584" + /translation="MTAQDRIVKNKMSLIELAEYLQNVSEACKIHGVSRQHFYDIKKA + YEENGLEGLKDKTRRKPCMKNRVAPETEEAVLRIAYEKPAYGQLRASNELRKQGVLVS + AGGVRSIWQRYNIETFDKRLKKLEEKAAKEGILYTEDQLAALEKAQQEKNISIDEIDT + QHPGYLLAQDTFYVGYIKGVGRIYQQTAIDTYSAVGFAKLYTAKVPVTAADILNDRVL + PFFENHMIPIMRVLTDRGTEYCGAPEKHLYELFLQMNDIEHTMTKAKSPQTNGICERF + NQTILNEFYKPAFRRTMYKSVEQMQEDLDFYMLEYNEERTHQGKRCKGKTPMQTFLDS + LPLAREKLLNDPAS" + gene complement(3531425..3531718) + /locus_tag="Ccel_2978" + CDS complement(3531425..3531718) + /locus_tag="Ccel_2978" + /inference="similar to AA sequence:KEGG:BSU11950" + /note="KEGG: bsu:BSU11950 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77272.1" + /translation="MSISKREKIIYSILKEVESGNKNLTHEDYDIEFDLFWDISIMIR + DAGLLKGVRFTLDPRVAFENSQITFEGLNYLKSNSALSKTYKGLKAIREWLPL" + gene complement(3531741..3532283) + /locus_tag="Ccel_2979" + CDS complement(3531741..3532283) + /locus_tag="Ccel_2979" + /inference="similar to AA sequence:KEGG:BSU20890" + /note="KEGG: bsu:BSU20890 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77273.1" + /translation="MADTNIDIITKLINCFKSPRYLFAISLISGILLFSPEYIINSLG + IQLFISKYRIWIGIGFLISFGFWITDISVILLKKRKLKSKVKFKISEREERLENLTYE + EKKILSYYIDYQTRTQRLSYSNGVVNELIYYKILYRSSNIINMDFKISYNIQPWAWNY + LNKHPELLQVNPNYSVGGYL" + gene complement(3532292..3532546) + /locus_tag="Ccel_2980" + CDS complement(3532292..3532546) + /locus_tag="Ccel_2980" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77274.1" + /translation="MECLCTKIDDLGYSTIEHEIVRYYDLGSVNSSGLPITLSDDEYG + TYYINGTRKHGDFSIRITKQPDGKYSLFVVAYNLKKHKNR" + gene complement(3532674..3533597) + /locus_tag="Ccel_2981" + CDS complement(3532674..3533597) + /locus_tag="Ccel_2981" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: pth:PTH_2135 integrase" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL77275.1" + /db_xref="InterPro:IPR002104" + /translation="MKNKQIKKADWKKALSDFLLLKRAEGKSERTIKDYDKHVNIFFK + RYPNALADLEASVLGYMGENIKPATYNLRRAYLKCFFDYLKEEDIITSNPIIKLPKRK + AQDKIIDIPVDVLQQLLALPDKSSFTGLVDHCLILLMMDCGIRPKEALTLKVSDFDIK + HNCVTIPAELAKTGVSRTLPLSIETVRPITKVISSRPKDWNNNVPVFCSCSAETLDSE + VLSRRFKRYSQKLGTDITPYSLRHCFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVAL + SDTDVKESHSSFTPIKNILPPKKTNIRKIRK" + gene complement(3533766..3533840) + /locus_tag="Ccel_R0070" + /note="tRNA-Arg3" + tRNA complement(3533766..3533840) + /locus_tag="Ccel_R0070" + /product="tRNA-Arg" + gene complement(3533967..3534083) + /locus_tag="Ccel_2982" + CDS complement(3533967..3534083) + /locus_tag="Ccel_2982" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77276.1" + /translation="MKECPNCKVIRENSDRYCECGYDLRLNILDETRIKHLV" + gene complement(3534121..3534924) + /locus_tag="Ccel_2983" + CDS complement(3534121..3534924) + /locus_tag="Ccel_2983" + /inference="similar to AA sequence:KEGG:CLK_0744" + /note="KEGG: cbl:CLK_0744 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77277.1" + /translation="MTIQVIAVLVLTLVIYVVGTLAYSVRIVGVKTGRIAIAFAIFNV + FALLSRTANTFQAPLLAKTIEKSIESGNTGGMLYIFRWILLSATLATIIGAMLLPTFI + RVFTKAVESFSVYRSVPRLILHGFSKSGIEQFKKSITIPKKENLSQLKSLRKIPKKIV + FLNVITSSISTVGVLASLYAGCLYPEFRTTCSTLSSAINGVATILMFLFIDPYISMMT + DDVIKGDCTELDFSRCVIFIVCGLIVGTMLAQILLVPAAMAIASIARVI" + gene complement(3535083..3535724) + /locus_tag="Ccel_2984" + CDS complement(3535083..3535724) + /locus_tag="Ccel_2984" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2683 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77278.1" + /translation="MKSKYNTFIDFFLLQKDFYSKLTDKSLWLYIGIVFVGLRDVIFY + ILNPQNPKGFFITNLSFDLKTASILLITALLIGFIDVLCFSYPVFDVIKHFKKKSERY + NASVVNTYSSLITKVMKVYILANIILTPMDIIIYFSSRWTLSTDSMILLFITTVMGIL + SYFWFNGVITRGLCMLFRLSNNVRGLVFVLVFFWNALISSAIQYLLSLVIMRL" + gene complement(3535807..3536175) + /locus_tag="Ccel_2985" + CDS complement(3535807..3536175) + /locus_tag="Ccel_2985" + /inference="similar to AA sequence:KEGG:Cthe_2682" + /note="KEGG: cth:Cthe_2682 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77279.1" + /translation="MFYGKEKRVIVLRDIHSNLFEEAILVMKQDTQNGDNEKKQQSEG + SSVSNNKFILREAETIINNYIKENKGNLATLQKEGKQSPSKKQLKRKLNESRFIKILI + INSALIGSIAAVAYILIEIF" + gene complement(3536245..3538659) + /locus_tag="Ccel_2986" + CDS complement(3536245..3538659) + /locus_tag="Ccel_2986" + /inference="protein motif:TFAM:TIGR02865" + /note="KEGG: cth:Cthe_2681 serine phosphatase; + TIGRFAM: stage II sporulation protein E; + PFAM: Stage II sporulation E family protein; + SMART: protein phosphatase 2C domain protein" + /codon_start=1 + /transl_table=11 + /product="stage II sporulation protein E, protein + serine/threonine phosphatase" + /protein_id="ACL77280.1" + /db_xref="InterPro:IPR001932" + /db_xref="InterPro:IPR010822" + /db_xref="InterPro:IPR014221" + /translation="MKTETFSYNRLGVYRDKLHKNSSSKAAALLDYLNKTNKLNLIVI + PAAFLLGRISLMGGLMPFGVALYAATLGLNLSRVLMALAIIAGMLTSGATIQIYTAAV + SMLLFNAMNIPFKKSVGSSLRTAMTAFVGVLIPEMLITYLQGFLLYDILKSLLNGFII + FALVFVFKNVLDVLGSTTKRYVLTNEEVLSIAIACALSIGGLGTWTVLGVSLKNILCI + LIILVFSYRTGAGNGAAIGVIVGTVISISSNSSPLMVSSYAFCGLLSGILRKMGKVGS + CIGVLMGNAVLTFYTNGSTEVLIYLYEIIGAIVLFILIPDKITDVIVNKFNKALSARG + DKKGYSIRIKEITVEKLNKFSKAFGEMAKTFDEISETRAITEKHDITAIFDRVADRVC + KDCSLCSHCWEQNFCNTYQILFKIVEKLDSKGWIDQQDIPQYFMDRCERIDDFVKAIN + YTYELFKVDIVWRSRVSESRGLVSQQMRSMSTIVSNLAVELNTDIVFKDDIENNIILE + LTKKGLRNVEAVVYENKAGNYEISLSYKGCGGKRNCIGCVEKVVSDAIGCKMVKSGSD + CRLNTKTNMCCIKLVKEETFKIITGVARIAKDDKQVSGDNYTFLNADDGKYISALSDG + MGTGHKACLQSKATVNLIEQFMESGFDKDTTVKLINSILVLKSNDESFATIDISVVDL + YDGEVEFVKVGAAPTFIKRADYVEIIRAASLPAGILSNVELELIHKNVNSGEYIIMVS + DGIVDSFKTSDDSIIEVQNVISQMTSKNPQKIADDLIEEALRRCKDKEPIDDMMVIVS + KIWKPL" + gene complement(3538902..3540341) + /locus_tag="Ccel_2987" + CDS complement(3538902..3540341) + /locus_tag="Ccel_2987" + /inference="protein motif:TFAM:TIGR01513" + /note="TIGRFAM: nicotinate phosphoribosyltransferase; + PFAM: Nicotinate phosphoribosyltransferase-like; + KEGG: cth:Cthe_1177 nicotinate phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="nicotinate phosphoribosyltransferase" + /protein_id="ACL77281.1" + /db_xref="InterPro:IPR006405" + /db_xref="InterPro:IPR015977" + /translation="MTDETYALLCDFYELTMSNGYFLNGFADKIVYFDVFFRKVPDEG + GFAIAAGLEQVIEYIQNLRFSKDDIKYLKDLNMFSDGFLEYLSNFRFSGDIYAVPEGT + PVFPNEPIITVKAPVIEAQLIETFMLLSINHQSLIATKANRIVRAARGRTVLEFGSRR + AQGADGAVLGARAAYIAGCEGTACTITDKLYGVPAGGTMAHSWIQMFDNEYEAFKTYC + ELYPHDTTLLVDTYNVLKSGVPNAIRVFKEVLLPRGISKCAIRLDSGDMTYLSKKARE + MLDNAGLTECKIVASNALDEYIISDLISQGACIDIFGVGERLITSRSEPVFGGVYKLC + AVENEKGDIIPKIKISENVTKITNPHFKKVYRLFENKSGKAIADQLCVYDETIDQTKE + LEIFDSEATWKRKTITDFTAKEIMVPIFIGGKKVYDVPSIRETRKYCKEQIDFLWDEV + KRFEFPHKYYVDLSQKLWDIKHKLIKENS" + gene complement(3540536..3540611) + /locus_tag="Ccel_R0071" + /note="tRNA-Val2" + tRNA complement(3540536..3540611) + /locus_tag="Ccel_R0071" + /product="tRNA-Val" + gene complement(3540615..3540689) + /locus_tag="Ccel_R0072" + /note="tRNA-Glu2" + tRNA complement(3540615..3540689) + /locus_tag="Ccel_R0072" + /product="tRNA-Glu" + gene complement(3540722..3540798) + /locus_tag="Ccel_R0073" + /note="tRNA-Met4" + tRNA complement(3540722..3540798) + /locus_tag="Ccel_R0073" + /product="tRNA-Met" + gene complement(3541120..3541851) + /locus_tag="Ccel_2988" + CDS complement(3541120..3541851) + /locus_tag="Ccel_2988" + /inference="similar to AA sequence:KEGG:Amet_2970" + /note="KEGG: amt:Amet_2970 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77282.1" + /translation="MLYSNNSSQFPNDIGNVVASAYGDVNGDRIPDYVYLTAVRTPDS + NFLREITLVIKDGKTGIKQSAKLPSDAGYAPGLFLGDFTGDRINDILVGINSGGSGGI + MFYYVFSDVNNRLSMIFNYEDFNNKYQYKVNYLNYYKVSVQNPVEKSTYILDITYKGR + EYLSEIYTSEGILKAPIEGWVDPLSGLYPVDFDGDGVYELLGFQKIAGRYHADSLGFV + QSILKWDNRIFGLSRQYVAIFGSQE" + gene 3542089..3542319 + /locus_tag="Ccel_2989" + CDS 3542089..3542319 + /locus_tag="Ccel_2989" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77283.1" + /translation="MIIRCERKEFIQEGDQLAITRDDKLIGYGKVIALLDEHVLVDID + DSASKSLFEIFSEAIPCDFTFVNEKYTPKSIE" + gene 3542542..3543828 + /locus_tag="Ccel_2990" + CDS 3542542..3543828 + /locus_tag="Ccel_2990" + /inference="protein motif:PFAM:PF00089" + /note="PFAM: peptidase S1 and S6 chymotrypsin/Hap; + PDZ/DHR/GLGF domain protein; + KEGG: ckl:CKL_2696 protease" + /codon_start=1 + /transl_table=11 + /product="peptidase S1 and S6 chymotrypsin/Hap" + /protein_id="ACL77284.1" + /db_xref="InterPro:IPR001254" + /db_xref="InterPro:IPR001478" + /db_xref="InterPro:IPR001940" + /translation="MYNNNDDWNNQFYNSSNFENNEIITIPPKRKKHKFTTYLSLVLI + TSLVTGAAVGGGMYYKFSKELEQQVGDLQKSVALSAKSNGNSTAATLTSADSLKAATL + LNTSAGDLSISEIAKKVGPSIVGVTMSVQNSRSSGFYGFGTPSSSSSEGSGIIISSDG + YIMTNYHVVSYADPKSGIKNTTLTVYLPDKRQAKATFIGGDEDNDLAVIKINLTNLPV + AELGSSSEVEVGDTAVAIGNPLGMEFAGSVTVGVISALNRQVDTGNGPMDLFQTDAAI + NPGNSGGALVNSKGQVIGINSAKISKNGIEGLGFAIPTDTAKPIIEQLRTYGYVKGKP + LMGISTQEVPERYSEMYGIPVGLYVVEVTPGGAAANAGIKAKDIIIKLDGKKVKTNAD + IDAIKKLHKAGDTVDVVVSRNGQQITLKLTFTEANQ" + gene complement(3543873..3544487) + /locus_tag="Ccel_2991" + CDS complement(3543873..3544487) + /locus_tag="Ccel_2991" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_1948 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77285.1" + /db_xref="InterPro:IPR000182" + /translation="MEYDLRPINLQELRDLYFNIENDFAPGEYPPYDTLYKQLEKGIQ + KGFMLVKEGIDVAYSVCTGDSTNSFVLISLLAVYKGYRGKGFGTEFLKMFKSRYCCET + SVIVEVEKPEDAVDQKERNIREKRIRFYEKAGFRLLPDIVYAIWDIPMYLMILPMENK + TIDGNSINIVNKEVEKAMSDIYLKLLGEKFFHKMELQIKNKPGL" + gene complement(3544529..3544810) + /locus_tag="Ccel_2992" + CDS complement(3544529..3544810) + /locus_tag="Ccel_2992" + /inference="protein motif:PFAM:PF04456" + /note="PFAM: protein of unknown function DUF503; + KEGG: cpy:Cphy_1545 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF503" + /protein_id="ACL77286.1" + /db_xref="InterPro:IPR007546" + /translation="MIVSTLRIKLYAPMCHSLKDKRMIVKSIVQRARNKFNISIAEIE + EQDLYQTIVIGVACVSTGRVQANAVLNEVIRFIEENTEAEITDFLFEDR" + gene complement(3544844..3545518) + /locus_tag="Ccel_2993" + CDS complement(3544844..3545518) + /locus_tag="Ccel_2993" + /inference="protein motif:PFAM:PF06555" + /note="PFAM: protein of unknown function DUF1121; + KEGG: cbl:CLK_0192 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1121" + /protein_id="ACL77287.1" + /db_xref="InterPro:IPR009501" + /translation="MDKNVKAILDRRIKKTMENLASNNMMPYYVENVKDVAGKVAGLL + KEGDTVAVGGSMSLFEAGVIDLLRSGKYTFLNRYEEGLSPEQMREIFLKSFLADVYLS + SSNAITENGELYNVDGNSNRVAAICYGPKSVIIVAGINKIVGNLDEAVKRVKTMAAPA + NATRLDCKTYCKEKGECMGLTSGNSFMTSGCGGQNRICCNYVVSAYQNQKDRIKVILV + GEELGY" + gene complement(3545536..3545997) + /locus_tag="Ccel_2994" + CDS complement(3545536..3545997) + /locus_tag="Ccel_2994" + /inference="protein motif:PFAM:PF02639" + /note="PFAM: protein of unknown function DUF188; + KEGG: aoe:Clos_2709 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF188" + /protein_id="ACL77288.1" + /db_xref="InterPro:IPR003791" + /translation="MQILVDADACPVKDIITKNAKKYGIPVIMIIDTSHELNDGYSTV + ITVDKARDSVDIKLINMVQRGDIVVTQDYGVAAMGLGKGAKVLNQNGLIYSDANIDRL + LFERHLGQKIRRAGGRTGTIRKRSKENDEAFEKALLLFIKPESEGPRDLKI" + gene complement(3546061..3546897) + /locus_tag="Ccel_2995" + CDS complement(3546061..3546897) + /locus_tag="Ccel_2995" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: sco:SCO6229 sugar transport system permease protein" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL77289.1" + /db_xref="InterPro:IPR000515" + /translation="MASKKINTFDVLKYITLLIASFIALLPIVVVLFISFKTSSEYTN + SNPLMPPKDWLNFSNFHDAFSDGGMLRGFVNTVIIMAVVLFGAIIIGTMVAYVLDRFK + FKGSGLVVGAFLLATLIPGITTQVATYKVINALHLQNTRLAPMILGVGTDIISIYIFI + QFISNISVALDESAMIEGASYFTIYRRIILPLLKPAIATVVIIKGTGVYNDFYTPLLY + MPKSSLGTVSTSLYRFQGPYGGRWEVICAGVIIAIIPTLIAFISLQKYFYNGFTGGSV + KM" + gene complement(3546897..3547784) + /locus_tag="Ccel_2996" + CDS complement(3546897..3547784) + /locus_tag="Ccel_2996" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: llc:LACR_1477 ABC-type sugar transport system, + permease component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL77290.1" + /db_xref="InterPro:IPR000515" + /translation="MFSNLSYKVQKRIIIVAFLIIPLLLLAVFSYFPALNLFYYSLTK + WDGISKTKEFVGLRNYVDLFSKQENFIVFKNSLYYLGGSVIQIGLALYFSSILSYKVR + FKSFFKGVLFFPYLLNGVAVSFMFMLFFRPEGTMDSLITAIGLGAYTQKWLGNPGIIN + FSLVAVSIWRFFGYNFILFSGAIQSVPAEMYEATEIDGANRFQQFWYVTLPFIKRVIE + LNVILSISGSISAFEVPYIMTGGSNGSMTFVIRTVESAFKWRKYGLASAMGIVLLIIV + VLTTLLQKKLFGDNKEVDA" + gene complement(3547922..3549310) + /locus_tag="Ccel_2997" + CDS complement(3547922..3549310) + /locus_tag="Ccel_2997" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: sco:SCO6231 sugar transport system sugar-binding + lipoprotein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL77291.1" + /db_xref="InterPro:IPR006059" + /translation="MIKNRILPLVLSVAMIAIAFTACGSKEKPNDTDLTSSASSTAAG + TTSKAKDIKGEILFYNTRTDMELDSYDKNWEYYIGEFNKNYPNIEVNIETSKDYEGDL + AIRMNSNEYGDVLFMSAKMKDSDLPSFFIPLGKKADLEKKYDFVQDRYVGEDIYGIPP + NGNGQGIVYNKAVFAKAGITSLPKSEDEFLSDLKLIKEKTDAIPLYTNYKDSWALNAW + EGYIDSVSGSDTYTNQVMLHEDDPFAPGKPHYIVYKYLFDVVSQKLVEDDPMTTDWES + SKQLLADAKIATMPLGSWAIPQIKSKAKNPDDVSYMPFPYNIDGKMYTQAAGDYKLCI + SKNSKNIEAAKAFLWWFLDESNYAQNEGLIPSLKGSAYPDTLKNFQDMGVTLLIDKGA + INDVTKNENGWLDAIDKESEVGLWNENFKKDIVDTALGNKKGTYNDVMNGLNKKWADT + RAKLIKEGTIGK" + gene complement(3549661..3550131) + /locus_tag="Ccel_2998" + CDS complement(3549661..3550131) + /locus_tag="Ccel_2998" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: cth:Cthe_2031 transposase IS200-like protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL77292.1" + /db_xref="InterPro:IPR002686" + /translation="MDKNNLAHTTWECKYHLVFAAKYRRQIIYGKIKQDIGKMLRELC + ERKGIEIIEAECCKDHIHMLVRIPPKYSVSEIMGYLKGKSSLMIFDKYANLKYKYGNR + HFWCRGYYVDTVGKNAKKIEEYIRKQLQADIASDQLSLIEYVDPFTGKQGKKSK" + gene complement(3550337..3551347) + /locus_tag="Ccel_2999" + CDS complement(3550337..3551347) + /locus_tag="Ccel_2999" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: regulatory protein LacI; periplasmic binding + protein/LacI transcriptional regulator; + KEGG: bcl:ABC0314 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LacI family" + /protein_id="ACL77293.1" + /db_xref="InterPro:IPR000843" + /db_xref="InterPro:IPR001761" + /translation="MKSNISMKNIAKELNVSIVTVSKALNDKDGVSDELKLKIKDLAD + KMGYRYNMLAKSMRDGLSYNIGVIIPEHFLGDDKSYYFSVFKHLSQIMEKYQYCAILQ + VLNAEDENGVILPKFYYDKKVDGLIVLGQVNKAYIKALQNIEIPVVFLDFYDENTNVD + SITVDNYSGAYELTNYLIKNGHVNISFVGDIYATSSIQDRYLGMCKSLLEHGIKLRED + YVICDRDEHGKYIELKFPKDMPTAFVCNCDGVAYNLIIKLKEMGFRVPEDFSVVGFDN + DIYATISDPQITTVEVDVEEMAGTAVKSILDKVKKENRSRGRSMIKGRIIYRDSVKKI + NR" + gene complement(3551485..3552525) + /locus_tag="Ccel_3000" + CDS complement(3551485..3552525) + /locus_tag="Ccel_3000" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: regulatory protein LacI; periplasmic binding + protein/LacI transcriptional regulator; + KEGG: cth:Cthe_2505 LacI family transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LacI family" + /protein_id="ACL77294.1" + /db_xref="InterPro:IPR000843" + /db_xref="InterPro:IPR001761" + /translation="MSKKVTMDDIAEKLGISKNTVSLALRGMPGISESTRKVIEQTAR + EMGYTYKVSARKNTMARNLCLIIAKSTRDSIGFFSYVQLGIEDEAKKNNLNTIIHYYD + ENVQGFETPNCVKDGMVSGIITLGRISRETINCIVGYNLPVVMVDNYFDNLSMDYILT + DNHSGGYAATEYLIDCGHTKIGFLGDISASISFYDRYQGFLKALRDRGIEINEGYSIT + DKKLEELPQEDITGLVNEIRTKAGLPTAFFCCNDAEAIVIIKVLKNIGVLVPNKISII + GFDDIENAANVTPELTTMRVQKEIMGKGAVCKLMEKLEQEIKSSEKILLSACLIKRNS + VNRSDMAFHGSC" + gene 3552745..3553755 + /locus_tag="Ccel_3001" + CDS 3552745..3553755 + /locus_tag="Ccel_3001" + /inference="protein motif:PFAM:PF04041" + /note="PFAM: glycosidase PH1107-related; + KEGG: tpt:Tpet_1543 glycosidase, PH1107-related" + /codon_start=1 + /transl_table=11 + /product="glycosidase PH1107-related" + /protein_id="ACL77295.1" + /db_xref="InterPro:IPR007184" + /translation="MSINGKSLKNIPWQDKPLGCNSVIWRHKGNPIIVWNPTPKTARI + YNSSVVPWNSGFAGIFRADHKDGKAQIHVGFSSDGVNWNIEDEPIVWHDEDGNLYQPN + YSYDPRIVELEGIYYIVWCTDFGGASLGLGVTKNFKQFTRLENPFIPFNRNGVLFPRK + VNGKYLLLSRPSDTGHTPFGDIFISESPDLVHWGRHRRVMQKGGSGWWQSVKIGAGAV + PIETTEGWLLFYHGVSGTCNGFVYSFGAAILDIEIPSKVLYRTRDYLLTPEMSYETSG + FVPNVVFPCAALHDSETGRIAIYYGAADTYSALAYAKEDELINFIKSNSELLPGDAEE + YR" + gene 3553773..3554981 + /locus_tag="Ccel_3002" + CDS 3553773..3554981 + /locus_tag="Ccel_3002" + /inference="protein motif:PFAM:PF07221" + /note="PFAM: N-acylglucosamine 2-epimerase; + KEGG: bfr:BF0849 putative N-acyl-D-glucosamine + 2-epimerase" + /codon_start=1 + /transl_table=11 + /product="N-acylglucosamine 2-epimerase" + /protein_id="ACL77296.1" + /db_xref="InterPro:IPR010819" + /translation="MDDKLINKLVNELETELRNDILPFWINNAVDTDNRGFYGLISSD + LTIDKTHAKAAVLNARILWTYSKAYSRYKEGKYFFMAERAYNYIVDFFIDKVNSGVYW + LLDYKGNVLNSKKQTYAIAFAIYGLSEFFLATGRKESLTKAIELYNALETHTWDCVNK + GYYEAHTTDWQPLADMSLSPADMNVSKSMNTHLHIIEAYTNLYRVWKDARLKSTLEEI + INITINHIIDPKKHSFNLFFDEKWNPVSEKISFGHDIEGSWLLCEAAEVLGNKELIKR + VSEISVAMAQRVYNTGIDTKYGGLFYEQDKNVIETIKDWWPQAEAVVGFSNAYQLTGN + DCFMIEAVNTWSFIKAHIIDKVHGEWVWGTSADGLNVTNNEKAGPWKCPYHNSRMCFE + ILQRFKKRKS" + gene 3555006..3556196 + /locus_tag="Ccel_3003" + CDS 3555006..3556196 + /locus_tag="Ccel_3003" + /inference="protein motif:PFAM:PF04041" + /note="PFAM: glycosidase PH1107-related; + KEGG: cja:CJA_0242 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="glycosidase PH1107-related" + /protein_id="ACL77297.1" + /db_xref="InterPro:IPR007184" + /translation="MVFDERLNYFIQKYNGLIKRKNSVQEGGNGIYDKYIYPVITKDH + TPLFWRYDLDRNTNPYLMERLGVNCAFNPGAIELNGKIYLVVRIEGNDRKSFFAVAES + ESGIDNFTFWDYPVVMPETKNPDINIYDMRLVKHEDGWIYGLFCTERKDPEAACGDTF + SAVAACGIARTKDLKLWERLPDLKTASPQQRNVVLHPEFIKGKYALYTRPQDGFIEIG + KGGGIGFGYTDSMENAVIYEEILMECKEYHTIKEVKNGQGPTPLKTEKGWLHIAHGVR + NTAAGLRYVVYAFLSDLEHPEIVTHRPGGFLIAPEGEERIGDVSNVVFCNGVVARQNG + DVLIYYASSDTRCHVASTTIDKLLDYVINTPEDPLRSYACVQQRIDLISRNLRLIKNN + TVSV" + gene complement(3556237..3556989) + /locus_tag="Ccel_3004" + CDS complement(3556237..3556989) + /locus_tag="Ccel_3004" + /inference="protein motif:PFAM:PF09323" + /note="PFAM: Protein of unknown function DUF1980; + KEGG: dsy:DSY0109 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Protein of unknown function DUF1980" + /protein_id="ACL77298.1" + /db_xref="InterPro:IPR015402" + /translation="MKRLNREVLAQLTVLLLMAALLLHAVAGGKIKYYVNIHMIKYIW + FSAAGVIIIALSLLPGLFKPKRRNSILPCVILTIPILAGIIIPPAPVETAHISTGNGY + TGVSSATGQIQQKRGKNSSETQVKGDAHIINISDDEYLKWYTEASKNPDKYNSRTVKI + KGVVFRMERFSCNEFVPARMSMVCCAADLVPYGFMCRYEDAEKWRNGEWVYVTAKIKV + EYEPHMKKKMPILYAISVTPAQKPENELVYPY" + gene complement(3557001..3558575) + /locus_tag="Ccel_3005" + CDS complement(3557001..3558575) + /locus_tag="Ccel_3005" + /inference="protein motif:PFAM:PF03773" + /note="PFAM: permease; + KEGG: cbe:Cbei_4662 permease" + /codon_start=1 + /transl_table=11 + /product="permease" + /protein_id="ACL77299.1" + /db_xref="InterPro:IPR005524" + /translation="MSIQISIIGGFLESGKTTFVQNLLKSQQSTYGNKTVLICCEQGY + EEYRESVLKRYNTTLIYVNDIHILDRGFISSIVEEYAPDRILIEYNGTWPIGDFLRIR + LPSGCCISKIVFIADASTFELYMSNMKSLIIEQISNSDVVILNRDKLLGTLEKTNIKR + AIKAVNRQAKIIYYKRIIDNKEKVHCFETQGFQKDIRNFLIITLLLVVYFFLISVRNT + GFTGDFKKIHTFITVFLSILIQALPFILIGIFISSFLQIFISDEKLVGMFSRFKWAGF + PAAVIMGIFFPVCDCAMAPVCSRLAGKGVPLYYVLTFLLSAPVVNPVVITSTYYAFQN + KPEVVLMRVGLGIAVALSVGLFVKFAGVSKEYAVKETILDTPCTGGYLGDFSQEGLAG + KLGMLIRHAGMEFFNVGSYIVVGAFITSGLQTFISGELFSTAGVSRSMGLLAMLGAAI + FMSVCSTSNAFIAKGFSYSFPMYSVVCYMVMGPMLDLKNLLMLSAGFKKKFLIELASI + LIVIAVFIFSITAPII" + gene complement(3558577..3559509) + /locus_tag="Ccel_3006" + CDS complement(3558577..3559509) + /locus_tag="Ccel_3006" + /inference="protein motif:PFAM:PF02492" + /note="PFAM: cobalamin synthesis protein P47K; + KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K" + /codon_start=1 + /transl_table=11 + /product="cobalamin synthesis protein P47K" + /protein_id="ACL77300.1" + /db_xref="InterPro:IPR003495" + /translation="MSVKIDIVSGFLGAGKTTLIKKLLKEKLGSEKVVIIENEFGEIG + IDSGILRDSGIKVKEINSGCICCSLVGDFSTALKEVLSKYTPDRIIIEPSGVGKLSGV + LEACEKIEKQADAKVNMCIAVVDAVKYIIYVNNFGEFFQDQIKNAKTVILSRTQMMEQ + NKISKVVNDIQNRNPKANVVTTNWEALKSKNIISLSEQGGGINIVNPPENRLHRHTKT + DKIFQSWGVETPKQYTDEGIRGILQLLSDKALYGNIMRSKGIIPLQKDSWIQFDFVPG + EISIKPCLPDYTGRICVIGEKLNTGELKKLFTGV" + gene 3559638..3560069 + /locus_tag="Ccel_3007" + CDS 3559638..3560069 + /locus_tag="Ccel_3007" + /inference="protein motif:PFAM:PF01475" + /note="PFAM: ferric-uptake regulator; + KEGG: cth:Cthe_0546 ferric uptake regulator family + protein" + /codon_start=1 + /transl_table=11 + /product="ferric uptake regulator, Fur family" + /protein_id="ACL77301.1" + /db_xref="InterPro:IPR002481" + /translation="MDKNVLKFSDLKTTKRRMAILAVLENSALPMTAEEIYSRVINDV + HMSLSTAYRTLGTLSEKGILLKNLSQDGKTYYQMNSHQHKHHLVCTLCNSTVPIDDCP + LSKIEENLIQQTGFTITGHSLEFSGICPKCSKHSSDAGFND" + gene complement(3560059..3560616) + /locus_tag="Ccel_3008" + CDS complement(3560059..3560616) + /locus_tag="Ccel_3008" + /inference="protein motif:PFAM:PF00583" + /note="PFAM: GCN5-related N-acetyltransferase; + KEGG: npu:Npun_F4186 GCN5-related N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="GCN5-related N-acetyltransferase" + /protein_id="ACL77302.1" + /db_xref="InterPro:IPR000182" + /translation="MKITSERLNLRFFRHEDFPLFYSVFSNEKVMRYAWIDKSNSEED + AYTFFEGFINTGEDVNKNGSYAFAVISKESNEFVGLADIQILSRNNSGGCGEIGYFLL + PEYWCRGFATELANSMIEFGFVRLGLHKISARCNSNNQKSEVVMRKAGMTLEGELRKV + RFKRGNWDNEKNYGILFEEWKGTNR" + gene 3560846..3561373 + /locus_tag="Ccel_3009" + CDS 3560846..3561373 + /locus_tag="Ccel_3009" + /inference="protein motif:PFAM:PF02559" + /note="PFAM: transcription factor CarD; + KEGG: cdf:CD3037 putative regulatory protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, CarD family" + /protein_id="ACL77303.1" + /db_xref="InterPro:IPR003711" + /translation="MFSVGNTIIYGNHGICKIVEVKDMTIDSNTRPYYVLKPVFENNS + TIYFPVGNEIAEKKMRRILSVEEIYTLIREMPDENTIWIENENERKEVYKSILTGTDR + SALVKLIKTLHLHEKELKDLGKKLHASDEKFLKDAEKTLYDEFVYVLDIDREEVLPFI + MEQIEINSKKQGEGD" + gene 3561374..3561862 + /locus_tag="Ccel_3010" + CDS 3561374..3561862 + /locus_tag="Ccel_3010" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpy:Cphy_2664 CarD family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77304.1" + /translation="MFNTGEYVICSQGGVWKVMDIVEDKYHLQKHESGDRIIVPTTES + GEIVRGISSKEKILDVINRVDFITTIKAPNDKIRKELYEDALKEFDEVGWIKIIKSSY + LRKQDGRLMQGETEYAEMAKSYLHGEISVVMGIPVNKVEGYISTAVSNDKWQLSDIQF + KF" + gene complement(3562356..3563462) + /locus_tag="Ccel_3011" + CDS complement(3562356..3563462) + /locus_tag="Ccel_3011" + /inference="protein motif:TFAM:TIGR00912" + /note="TIGRFAM: spore germination protein; + PFAM: Spore germination protein; + KEGG: aoe:Clos_2720 spore germination protein" + /codon_start=1 + /transl_table=11 + /product="spore germination protein" + /protein_id="ACL77305.1" + /db_xref="InterPro:IPR004761" + /translation="MSKELITQKQASAIMIMFALGSTLVLGAGGAAKNDVWIAILISL + LMSVPIMLLYCKIQMSYPNKNIYEIFDNAFGKVIGKIMSLMFIWYSFHLGSLVIRNFT + EFIVNVSLPKTPQNIVGLFMVFLCIWAVKSGIEVISRWTAIMFPVTLFVVFVVTILFV + PLFNFTNLKPVLYYGMGPVINTAFSVFAFPFAETVIFLAVLGNLREQRGVYKVYFFSL + LISGISTLMVSVRTLLTLGVPNISVIFFPTYASVRLIDIGDFLQRIEITVAMVFLFAG + FIKISICLYSTSIGIAHLMGLSSYRQVVAVLGLAMSVLSIVVYSNTLEMFDWSDNFYK + YYAFIFQVILPVITFIAIEARKIYSRKKKLQHSN" + gene complement(3563476..3563700) + /locus_tag="Ccel_3012" + CDS complement(3563476..3563700) + /locus_tag="Ccel_3012" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77306.1" + /translation="MIYFLFFSIIIFFYVINDLIEIFKVNTRLVFWVFVSFSVLVCFG + ALLVASDIITPSVSKYLKELVVTIWNLSEN" + gene complement(3563704..3564846) + /locus_tag="Ccel_3013" + CDS complement(3563704..3564846) + /locus_tag="Ccel_3013" + /inference="protein motif:TFAM:TIGR02887" + /note="TIGRFAM: germination protein, Ger(x)C family; + PFAM: spore germination B3 GerAC family protein; + KEGG: aoe:Clos_2719 spore germination B3 GerAC family + protein" + /codon_start=1 + /transl_table=11 + /product="germination protein, Ger(x)C family" + /protein_id="ACL77307.1" + /db_xref="InterPro:IPR008844" + /translation="MNKRLFCTLLMLNLVAVFSTGCWNYREINQMSIVAGAAIDKAPN + GKYKVSIEIIDLKTGGTEAKVKTKKVETYGDSVVDAVRNAISFNANTLYWGHTEIIII + SKDIAEEGIVQILDCFSRDAEPRLSMDILVSKEDTAEEILDSQSITTEVRTFEINKIL + DIEKRLGKSLKVEIYQFINALGETGISPIMPVIGLTINSEEKTSELSGTAVFKGDKLA + YMFGQEDTQYFLFVNNKIHEGVLVVNNDDDNITLRIIKNKTKLKPVYNNGKLHFDIYI + KTKVALSEINKSTKLENVEDIDKIQKIAEKYLKNKVESVIKAVQNEYGIDIFGFGRSV + RQDFPNLWKEINPDWDNVFKNVPVNVNVEIQVKNSGLLSKKIVIGD" + gene complement(3564843..3566402) + /locus_tag="Ccel_3014" + CDS complement(3564843..3566402) + /locus_tag="Ccel_3014" + /inference="protein motif:PFAM:PF03323" + /note="PFAM: GerA spore germination protein; + KEGG: aoe:Clos_2718 GerA spore germination protein" + /codon_start=1 + /transl_table=11 + /product="GerA spore germination protein" + /protein_id="ACL77308.1" + /db_xref="InterPro:IPR004995" + /translation="MDMVIILSLWKKNKNDAKSKTITPGKQSGADSISSTLSKNIDLF + RNIFRDDDTFIVRHVENQHNKSIKCCVLFMEEMIDTTIVNENILRPIMQDSTLKNNND + TLVQFQNRVITSDNIKRSSDVNLLTNSILKGDTVLLLEDCYEALIISSIGVKSRAIQE + PEAEKLIRGPREGFTEPLMINLSLLRKRLETPDLKFKFLTLGTKTNTKICICYLDSLV + NRKILNEVETRLRSIKIDGILASGYIGELINDEPYSPFKTVGSTERPDVVVGKLLEGR + IAIVVDGTPVALTVPYVFIEYFQINEDYYINYYFSSISRILRILGFILTVSVPAIYVA + LMTFQQEMIPTPLLISISSSRQGVPFPTIVETMLLLIVFEILRETGTRMPTNIGQALS + IVGALVLGQASVQAKIVSAPVVIVVAISGITSLMIPKIQGAAIVLRVIFLLLSAFLGF + YGLIFGITGTLLHLCEMRSFGVPYLLYLTSMNPYDLKDTIIRAPLWKMKKRPKLISTD + NMMRQVIGRKK" + gene complement(3567167..3567449) + /locus_tag="Ccel_3015" + /pseudo + gene 3567564..3567755 + /locus_tag="Ccel_3016" + CDS 3567564..3567755 + /locus_tag="Ccel_3016" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77309.1" + /translation="MRSRLFLFIQVLVFTLQLTGTALLNSGCYRLNDGNEAPTLILRE + ISLIYLYLFMKNITGTTYL" + gene 3567761..3568845 + /locus_tag="Ccel_3017" + /pseudo + gene complement(3568987..3569157) + /locus_tag="Ccel_3018" + CDS complement(3568987..3569157) + /locus_tag="Ccel_3018" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77310.1" + /translation="MIYYKTKNIGVTSESNIQLWNVCEELIDVFVFTYEVLLMVFYLY + YVSYTIKTAKSK" + gene complement(3569800..3571629) + /locus_tag="Ccel_3019" + CDS complement(3569800..3571629) + /locus_tag="Ccel_3019" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: swo:Swol_0298 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL77311.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR001917" + /translation="MNKRILSIMLVVLMCLLLFPLSAAAEAVNVNATYANGVVTIAGT + GFTSGTSYSVRVVDIVNSSIKAMGQTTADGSGDISASITTGALGTLANYTVYVNKPDG + TFAGSDTTIVADITTHTATIQAGTGGTITTGASGSYAAGATITLVASANSGYVFSSWT + SNAGGTFVNANSASTTFTMPAASVTITANFTYSSGSGGGGSVMPTPTPEPVTTKDGNA + TTVSTSVKATTDSTTGTATASVEASAFNSLTDKAKEAETSGQKAVVEIKVGVAANTTA + VTVEIPRDAFNKVAEETKADVKVDAGIGTVTFNTKAVESISGAVNAGNISISITKVDA + STLTSEVQARVSERPVFDFSVKSGSTDISNFRGGNAKISIPYTLKPGEKENSVVVYYI + DNTGNLKTVRGRYDPTTRTVNFTTSHFSQYAVGYNEVNFKDVAAKAWYNEAVGFMSAR + GIVNGVGSGKFAPANSVTRADFLIMVMNSYGIEIDTTITDNFADASNKYYTKYLGTAK + RLGLVSGVGENKYAPEATISRQDMFAILYRALDKLGELPTGTIGKSLGSFSDAGDIAG + YANDAMKLFVETGTISGDGSKLTPKATSTRAQAAQVLYNLLLK" + gene complement(3571650..3575402) + /locus_tag="Ccel_3020" + CDS complement(3571650..3575402) + /locus_tag="Ccel_3020" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77312.1" + /translation="MTETRMRKGLAMLMVLCMLLTMLPMSVFAATTNVAVGTQVGTIT + AAAAEQSATFDVTTDAADTQPVTISWFTDISGGTSTTEPTGILASGSDVSSGGSTITV + NGDNTTTAGNYYFKVTIDGITSSVVTLTVADPDAASVATVKGLVAGATYTMTQAEATD + EATVKTAIETVIAGLALEGVTTSVTKVDYTPAVAGDVTTPAGTDGKYTFTVELSKGSA + SDTTATLTMTVTATPYDADAASVATVKGLVAGATYTMTQAEATDEATVKTAIETVIAG + LALEGVTTSVTKVDYTPAVAGDVTTPAGTDGKYTFTVELSKGSASDTTATLTMTVTAT + PYDADAASVATVKGLVAGATYTMTQAEATDEATVKTAIETVIAGLALEGVTTSVTKVD + YTPAVAGDVTTPAGTDGKYTFTVGLLKGSASDTTATLTMTVTATPYDADAASVATVKG + LVAGATYTMTQAEATDEATVKIAIETVIAGLALDGVTTSVTKVDYTPAVAGDVTTPAG + TDGTYTFTVGLLKGSASDTTATLTMTVTATPYDADAASVATVKGLVAGATYTMTQAEA + TDEATVKTAIETVIAGLALDGVTTSVTKVDYTPAVAGDVTTPAGTDGTYTFTVGLLKG + SASDTTATLTMTVTATPYDADAASVATVKGLVAGATYTMTQAEATDEATVKTAIETVI + AGLALDGVTTSVTKVDYTPAVAGDVTTPAGTDGKYTFTVGLLKGSASDTTATLTMTVA + ATPYDADAASVATVKGLVAGATYTMTQAEATDEATVKIAIETVIAGLALDGVTTSVTK + VDYTPAVAGDVTTPAGTDGTYTFTVGLLKGSASDTTATLTMTVTATPYDADAASVATV + KGLVAGATYTMTQAEATDEATVKTAIETVIAGLALEGVTTSVTKVDYTPAVAGDVTTP + AGTDGKYTFTVELSKGSASDTTATLTMTVTATPYDADAASVATVKGLVAGATYTMTQA + EATDEATVKTAIETVIAGLALEGVTTSVTKVDYTPAVAGDVTTPAGTDGKYTFTVELS + KGSASDTTATLTMTVTATPYDADADAASVAADKAALTSDVIKGGNADLENVTGALAAL + PTVGSVNGSAITWVSDTPTVVSNNGQTVVRPAFGAGDATVTLTATITKGLVTDTKVFT + LIVKQQDSGYTLAIGTESKGGAGCTRTITIGGANAGDLAGKYLVVQFTEGTGDNAKVS + VVMISPASQSVTVSYQVDGTTVETWLTSAMPNLIDSDMGVIVYAHQ" + gene complement(3576085..3576234) + /locus_tag="Ccel_3021" + CDS complement(3576085..3576234) + /locus_tag="Ccel_3021" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77313.1" + /translation="MEEVGAVGKVIELRICSTKKSVKAARKMKPAKQGKGAVKTADLI + YKTKQ" + gene complement(3576213..3576548) + /locus_tag="Ccel_3022" + CDS complement(3576213..3576548) + /locus_tag="Ccel_3022" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77314.1" + /translation="MQHKNYTEFNGYYQLVLVDLFKWYSTYVKSYNLLFEMNKLAEVS + KEDKEAILSMIENLTDLDNADTAIDKLNSLLATQTNTVETEAEINTAKVKNVKAQEIK + KLRWRKSGQ" + gene complement(3577404..3577895) + /locus_tag="Ccel_3023" + CDS complement(3577404..3577895) + /locus_tag="Ccel_3023" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dvu:DVU1121 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77315.1" + /translation="MANEKVKKSIFKRWWFWAIIVIIFVVVAVNQQGDSDKTVSTNTD + ANSSVSKSTPTQVKEKPIVVKAEDLAATFDENEIKGNKLYKDKIAEITGTVSDIGESL + GQTYVVLSSGKDFSITNVQCFFKDDNEISKVAEIKKGTKVTIVGQIDGKSINVAVNDC + KIK" + gene complement(3578044..3578214) + /locus_tag="Ccel_3024" + CDS complement(3578044..3578214) + /locus_tag="Ccel_3024" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77316.1" + /translation="MKDKFAKLIDVKTIVTFALVGAVIGFTATGKIDPEKLASMTTMA + VSFFFAVKLNQK" + gene complement(3578215..3578916) + /locus_tag="Ccel_3025" + CDS complement(3578215..3578916) + /locus_tag="Ccel_3025" + /inference="protein motif:PFAM:PF02557" + /note="PFAM: peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /codon_start=1 + /transl_table=11 + /product="peptidase M15B and M15C DD-carboxypeptidase + VanY/endolysin" + /protein_id="ACL77317.1" + /db_xref="InterPro:IPR003709" + /translation="MASVKFKYLDEGTIYPKLIQAVNTLCAAKGKDCLCTSGYRSLAK + QKLINAQSLAQRKSQGGFQKADGSVYTPDGKCWAAAYGKSNHCFCIAMDITDPWFNAL + TNAELKKYGLVKPMDHEPWHVQLIEHQGISQKQKESIRDGVLKGVDNGMDIKEFQAMT + GLKTDGIAGPKTKAKAKEILQSCQEILGNNFKTAEDAIKATQSSPKLWLGLIKTLKYF + DSFIMNIVNKMGGRT" + gene complement(3578927..3579181) + /locus_tag="Ccel_3026" + CDS complement(3578927..3579181) + /locus_tag="Ccel_3026" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77318.1" + /translation="MTGECGYRCLNEERIRTLEQNHSETKVYVKAIKEDLTEIKADIK + KRNESDNKAWSPIMLELIKALTTAITVIGAIVGALKFTGK" + gene complement(3579212..3579502) + /locus_tag="Ccel_3027" + CDS complement(3579212..3579502) + /locus_tag="Ccel_3027" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77319.1" + /db_xref="InterPro:IPR013513" + /translation="MEALRCAVLAQDGTTVENIVIADQSFAYANGLIVCGTVPVGIGD + IYRDGFFYRNGVKLEAEQTAIEQLQAENAELRAKIEQVSKAVDCLLNMQGTT" + gene complement(3579519..3580379) + /locus_tag="Ccel_3028" + CDS complement(3579519..3580379) + /locus_tag="Ccel_3028" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mbb:BCG_3414c hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77320.1" + /db_xref="InterPro:IPR002173" + /translation="MGRSFGESFVRPKGEKVQGTPVKVNYTGSCKIVTESASRGYIEC + TSSGTLSFEGRLPAKLDVFLVGAGGGGSSSGSSYVGGGGGASGYTKTYYGVTPTTPVT + IYVGSGGTAGSSGGSSTYTGLTPAAGGNGATSSNGANGGSAGGGGMILSTSAWSSGGV + AGSNGGNGTPPYYNTGSSGAGSNGTGQGTPTTDFWGRIHAGGGAGGAGGNTSTGVGAS + GDPGISSFTAGSGSAGQMGSVGVMGCAGGNGGGGYGGGGGGGGYGSSNRGTGGTGGSG + IVIVRWGYPT" + gene complement(3580379..3580822) + /locus_tag="Ccel_3029" + CDS complement(3580379..3580822) + /locus_tag="Ccel_3029" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mag:amb4272 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77321.1" + /translation="MPANTIPIYPITPHVSSITLLTADTNFKTPATNGKVLVTAGTNG + TRIDAVKVRALGTNVATVLRIFWNDGLGVEEANFSLVYEVELTATTVQTSKITGVDTV + LLPINYANDGNGVLPPALNAGQKLYVSLGTTVASGYAVTFMGGDY" + gene complement(3580824..3581642) + /locus_tag="Ccel_3030" + CDS complement(3580824..3581642) + /locus_tag="Ccel_3030" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77322.1" + /translation="MAINKYCNLYGENKIKDDYDKINIGFSEVETDITGVLNSESDRE + TAETQREVNEVDRQLRYSNTKHYGPYDPDFVYHTNNIVSYQGSSFMLKENPDGTILES + QGFSPPEYPTEDNERWKLVGKRGDKGDTGTVPNIQIGTVTTLQPGKLVTVTRQAGSPN + ESPVFDFAIPKGQDGTGAGDVLWADIDQDDDGIIDTANTANNALNSGNADKLGGQLPG + YYAKETSLEQHINNSTDAHGLNNKLDKSEFNNYIGGTSHVSSILYAYKNIGGAL" + gene complement(3581620..3581886) + /locus_tag="Ccel_3031" + CDS complement(3581620..3581886) + /locus_tag="Ccel_3031" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77323.1" + /translation="MATQKILDRNYKIEGGVVTIVETTQKQLNKAELQAQKIQLLNRQ + TQLSNQVTGLQEQSKSIDESIKEIDDMIASLDGGVEQDGDKQVL" + gene 3582009..3582671 + /locus_tag="Ccel_3032" + CDS 3582009..3582671 + /locus_tag="Ccel_3032" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77324.1" + /translation="MKKFLSGLITGLLVSVSLTAFAAIQLKVVPNPYPVFINNAKANV + QGYNINGSTYLKLSDLKTAGLDAKYNNAKKQIEVNSVNNSATDADQISVNPTSDNIDG + FKIYKLDGKDYVRIYEIVKYCNDQYIKNQTDKKVFFYLRTKSIYSESDTNYKGQTPTV + ESTMFYIEKHDLSVHPRVITTVDLFSVKLTNGRIDINVFKEYFQPIVNLSLEDVYNSK + SK" + gene complement(3582720..3584711) + /locus_tag="Ccel_3033" + CDS complement(3582720..3584711) + /locus_tag="Ccel_3033" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0969 KID repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77325.1" + /translation="MYQVSDLFKKYARNYDRTLDAKVLIDDLTLTSSAVVEFTIEDDI + APSGDFSIGTATASKLNLSLRTVETIPVNAKIVPYIRFLGSEGESEWFKLGEYFIDSR + IIEQKVWKLTCFDRMIYGEQDFISSLIYPATMQAVWDECCGILGVESSADINQAYTFQ + VAPTGHKIREVLGFIAAAHVASAKIMKDGTMGLIKFAKSSQTVEKITASNYIKAPVTN + PAKSITKIVVTSNNQGDTSQIEVGEGDESKTLTINNPYINQNILNDMYATLNGFRYVP + YSMEWFCYPWLEVGDTIDIEQFQTLSWLEATMPWKDADFPWRDLPTFNTVLMKNTISY + KGGLKASSSASAASAQQSETKFKGPLTRKVEHIDKTAVKENKNYYGVSITREEGIRVD + STSGSSAIFNGDTISLGASSDSGIYFDYLTGKYRINGTLEAVDGHFDGTVLAENIDTT + NAKISVAQIEDLIVGNNVEMGPNAMIAWNKVIGSNAGAVSAWEDSGYATHITSSGVYT + GSIYANQIYGGVANLNDEVNIGDPNSLMPKSLNFYNNASSSSWSGLSLNIDGALLLDS + YNGVSIYGGPFNWIDIGLHGQDNIYLFGDVEINGTCKFNAVDFSDSYVDGLYTDNTGL + HNHGIAGGTRLAKVDENNNITGYVTWVESGGHSHIVDAY" + gene complement(3584716..3585075) + /locus_tag="Ccel_3034" + CDS complement(3584716..3585075) + /locus_tag="Ccel_3034" + /inference="similar to AA sequence:KEGG:LJ0323" + /note="KEGG: ljo:LJ0323 Lj965 prophage protein" + /codon_start=1 + /transl_table=11 + /product="Lj965 prophage protein" + /protein_id="ACL77326.1" + /translation="MQLKINGIEIAAYPTEFTVTPLDVDNAETTNRAADATLHRDRIA + VKRQIDMSFGLIEWPVMATLLQSMSNPYFEVYYPDPMEGKYVTKTFYVNNRPCQAAVE + QKGKLYWKGLKFTLTER" + gene complement(3585089..3587614) + /locus_tag="Ccel_3035" + CDS complement(3585089..3587614) + /locus_tag="Ccel_3035" + /inference="protein motif:COG:COG5412" + /note="KEGG: dsy:DSY2176 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Phage-related protein-like protein" + /protein_id="ACL77327.1" + /db_xref="InterPro:IPR000209" + /translation="MSNGSVGQIALDLGVNYDGFNKQLSGIAGNATNMVGASFKKLGG + IVAAAFAVDKLIDFGRQSMELASNLTEVQNVVDVTFGSMAADINAWSKNMLSGFGLSE + LSAKKYSSTLGAMMKSSGLVGTQMEGMSKKLTELSADMASFYNLSNDEAFEKIRSGIS + GETEPLKQLGVNMSVANMEAYALTQGIKKQYSEMSQAQQTLLRYNYLLSVTKDAQGDF + ARTSGSWANQIKLLGEQWNIFKGSMGAGFINILAPIVRGLNFLISKLQIAAQYFKAFT + ALLFGDASGGSVSGAANNAASATSDMGTAAGGAGKEVKKAGKDVKGALGGFDQLNTLA + MSAADSMDDAGSAAGGLADMGGMGDMNLGGGNIDIGIDPSKLKPLQDILNNIKSIASQ + VAGYFVANFGPPIAQAISAISVPLQGWKTAIADAFSQFQTLGEPLKQWFVGDFTTQIQ + TGIKVTGNVLAGLLDTGLKVFNTIKEVAFPIVSWFVTDGLPMISQFTTQWGNLFQNMF + DSTKQIFDMLWDQGVAPGLRVVSGMILDTLNIIKGFWDDWGGKIFEGLNGLVGSIKSV + MTNLWQNFLQPIWQNICETISWLWSKHLKGLIKEITDFVGKLVTAVLDITNKFITPLV + NMLIKVLGPTWSNIFNGIVNVIGTVVGTIVDVIKGLIKSLGGLVDFIAGVFTGDWKRA + WTGIKDFFKGIFDSIVGIFKGAINLIVDAFNFMIGALNNIQIKIPDWSPIGGGKSFGI + NIPKIPKLANGGLVSAPTLAMVGDNRNAQADPEVVSPLSKLQGMLNGGNQEVVAAINE + LMELIRNLQTPVIMKVGETEFGKAVIRTANVANRQSGYTLFEV" + gene complement(3587607..3588017) + /locus_tag="Ccel_3036" + CDS complement(3587607..3588017) + /locus_tag="Ccel_3036" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0964 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77328.1" + /translation="MLLCRIWNTRKRLPDFKRSNNEESFYDIREDWALIEASLATQYG + IRIRQHTDMPWDEFCTLVAGLMPDTPLGNIVTIRSEKDRKVIKNFTPSQRKIYNDWRL + KRANKQLDNPNVLDQKMKDLEMEFARMFGGGGNV" + gene complement(3587959..3588264) + /locus_tag="Ccel_3037" + CDS complement(3587959..3588264) + /locus_tag="Ccel_3037" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77329.1" + /translation="MSKVINITDKLSKEKPSIQIGDKTYSVDDTITNVLKFEELANIG + TSSAMVEAISLALGSKAAKELSVEKMTIQSFKVLATAVIAAMQDMEYEEAAARFQKK" + gene complement(3588302..3588754) + /locus_tag="Ccel_3038" + CDS complement(3588302..3588754) + /locus_tag="Ccel_3038" + /inference="similar to AA sequence:KEGG:CPF_0962" + /note="KEGG: cpf:CPF_0962 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77330.1" + /translation="MPEVAGVFPVHNNKFKIGTAGRASTTEQMLIIKDLETFSPSIDA + NTEEWTPMDQAGWIRRAVTGKGLTFSFSGKRRYGDPGNDYIGGLLLGTGQDVESKFEW + EMPSGAKLTMDCVINLTTPGGGDSTNIDTLEFEVLSDGLPTFTPAPAT" + gene complement(3588754..3589152) + /locus_tag="Ccel_3039" + CDS complement(3588754..3589152) + /locus_tag="Ccel_3039" + /inference="similar to AA sequence:KEGG:CPF_0961" + /note="KEGG: cpf:CPF_0961 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77331.1" + /translation="MMTLAEVKDWLKTQISCPNWYISKIDGSKEQCIGIYSVAGPTPV + IALGGIENTSYATKAISILVHWGKNADIAEQKAQEVYNCMFGQSAEIGGKRVIQFNMR + TPEPVSVGTDDNNIFEYVIETVIYYERSGM" + gene complement(3589149..3589532) + /locus_tag="Ccel_3040" + CDS complement(3589149..3589532) + /locus_tag="Ccel_3040" + /inference="similar to AA sequence:KEGG:CPF_0960" + /note="KEGG: cpf:CPF_0960 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77332.1" + /translation="MAIRVNVKMNHAALGRLSNAQKQALEMTAEAVKSDVTLSGTIPK + QTGELERSAYVDTSQISKGKTSIGFDTPYARKLYWHPEYDFRTDKNSNAQGKWMQTYV + DGPKKNFAKNAFRKLYRKLTGGVVK" + gene complement(3589532..3589849) + /locus_tag="Ccel_3041" + CDS complement(3589532..3589849) + /locus_tag="Ccel_3041" + /inference="similar to AA sequence:KEGG:CPF_0959" + /note="KEGG: cpf:CPF_0959 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77333.1" + /translation="MKLPFPDWILVTPVKIYQETQGENGIDEQLIFNGKCCCDDKTKQ + VLDAERRLVTLAGKIILKGDIYPDDLISGYVMLGESKKTIYRTTRPRNPDGSVFSTEL + ELI" + gene complement(3589852..3590214) + /locus_tag="Ccel_3042" + CDS complement(3589852..3590214) + /locus_tag="Ccel_3042" + /inference="similar to AA sequence:KEGG:CPF_0958" + /note="KEGG: cpf:CPF_0958 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77334.1" + /translation="MSYVDVEYYKNTYGGTVIPDAELTRQLDKAFDQIDSLTFNRIVG + KGFDNLTSFQQERVKKAVCVHADFVYQYGPYLDMPVSGYSAGSISLSFKSVEAGGIKT + SEDVTNLLRPTGLTDRRL" + gene complement(3590227..3590502) + /locus_tag="Ccel_3043" + CDS complement(3590227..3590502) + /locus_tag="Ccel_3043" + /inference="similar to AA sequence:KEGG:CPF_0957" + /note="KEGG: cpf:CPF_0957 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77335.1" + /translation="MKATKGNKVYSVDETNKAFYVGQGYDIVDDDGNVIEQGAGKKVD + LKKYNDLQEKLTKLAKENKDLKEKSAALEKENKDLKDELKKAKKDAQ" + gene complement(3590514..3591419) + /locus_tag="Ccel_3044" + CDS complement(3590514..3591419) + /locus_tag="Ccel_3044" + /inference="similar to AA sequence:KEGG:CPF_0956" + /note="KEGG: cpf:CPF_0956 putative phage major capsid + protein" + /codon_start=1 + /transl_table=11 + /product="putative phage major capsid protein" + /protein_id="ACL77336.1" + /translation="MPVYSYAEQFEGQLQQKYARELTSYALTQSNQGIKFINAQTIKL + PRLTLSGYKDHNRGGMGFNTGSISNDWEPKKLEHDRDVEFAIDPMDIDETNLVIEMAN + IQNVFETEQAIPEKDSYRYSKLYAEAKTYAADGAVIDNTTLTVSNVLDWFDTQMEKMD + DEGVPSEGRILYVTPAMNKLLKNASGLTRNIDVNSNNGNIDRRVYSLDDVTIVKVPSA + RLKTKYDFTNGCVPSVDAKQINMILIHPSCVVSRDKYAYMKVFTPGTDSRTADKYVYQ + NRYYTDTFLIQNKACGVAINAEAEV" + gene complement(3591434..3592015) + /locus_tag="Ccel_3045" + CDS complement(3591434..3592015) + /locus_tag="Ccel_3045" + /inference="protein motif:PFAM:PF06810" + /note="PFAM: minor structural GP20 protein; + KEGG: cno:NT01CX_2174 scaffold protein" + /codon_start=1 + /transl_table=11 + /product="minor structural GP20 protein" + /protein_id="ACL77337.1" + /db_xref="InterPro:IPR009636" + /translation="MEWLKKLIEAAQIKDGKLDVEALMAQINTEFPKNAVPKDTYNAL + AETKKQLEKDVSTRDKQIEDLKKVDAAGLQAEIEKLQKENKEAADKYAADMKDITLTN + AIKMAINGKVHDEGIVSGLFDKSKLVVDGDKVVGLDDQIKGLKESKAFLFKEEDPSGS + QKPGFKVGTDGSKGAGADVDTQLASIFGNTTTK" + gene complement(3592165..3592398) + /locus_tag="Ccel_3046" + CDS complement(3592165..3592398) + /locus_tag="Ccel_3046" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77338.1" + /translation="MLIHINGNIYEGDRQYADAILKVAKEKYKKERSNAIYGVEKNDM + LEMKRETFLSSKLMQEKAAEYRKAGFKVYSVSR" + gene complement(3592456..3592674) + /locus_tag="Ccel_3047" + CDS complement(3592456..3592674) + /locus_tag="Ccel_3047" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77339.1" + /translation="MGEDFYFAYDYDGTKGTASRLYRRIDDQFQRFIPQKRLWESAPE + QCCIYIGEDTFYDEITEEQAKEIIKTWN" + gene complement(3592679..3594610) + /locus_tag="Ccel_3048" + CDS complement(3592679..3594610) + /locus_tag="Ccel_3048" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0952 putative phage minor capsid + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77340.1" + /translation="MATEKYDIRKIFDDMALDLIRSQKRTFLRHQGEQLKEGFQWEQW + QLGKLRELNKYRQTNKKIIGGYSDEIMSLIDETLKSSFRKGENNVEKTISEIKNFVID + TPDSGIDTDNLKKYTPDEIAALREAETIIEEAAKLPKATGTDTFFSVNRKKLKALQKA + VKKDMGKAQNAVLRKMDDVYRQTIYKAQVYMGSGATTLDQAIDMATKDFLEQGINCIQ + YKDGKMVNVASWAEMALRTASHRATMLGEGSKMDEWDMHLVVITAHGNTCELCLPWQG + KILIDDVYSSGKPDGVHTLLSTAIDEGLFHPNCRHSRAIYFEGITELPKPPVNDEKAV + ERYQSEQKQRGIERKIRKYKRLEEGSVDPQNQAKYGAKVQEWQGALRQHLKDNTYLRR + DPSKVQTDIRSVNQINGARDKKQFSRYKQILGNRVPNSLEDFQYLKYNESDKWAVIKA + DYRKLNAYNKIIENEPAITNDLKEVSEITGVNMVGLEYRVKTKESFLRKVNTDSLHSL + DTKVITDTIASTNDVIRYTYQDSPERLVESYRQVKGNLLGKGYSEVKVKNFWMDKRNP + YNGVNCCYMSPQGQKFEVQFHTPESFALKDGELHKLYEEARDDSILPQRKAEIITEMF + RLSAKLTRPQGIETIKPRR" + gene complement(3594591..3596093) + /locus_tag="Ccel_3049" + CDS complement(3594591..3596093) + /locus_tag="Ccel_3049" + /inference="similar to AA sequence:KEGG:CPF_0951" + /note="KEGG: cpf:CPF_0951 putative phage minor capsid + protein" + /codon_start=1 + /transl_table=11 + /product="putative phage minor capsid protein" + /protein_id="ACL77341.1" + /translation="MGWIRDMVTKAAIKILKIQPALENRNITVREPFSFETNALRNRL + WYRGEPSELEQFFKQTAFDSVSKGRFWAAVPSVGLGIRKIHSGLPSMIADRLSDIVIA + DLDGIELKNQAETDLWDEISKDNKANKLLGEAITETLVEGDGAFKITIDTDVSQYPLI + EFYSGERVDYTYMRGRLQEVIFYTDYVVREKEYRLAETYGKGYIRYKLFDSYGKEVAL + TMVPETAALKDITYTGDFIMAVPLMFFKSPKWQGRGKSLFDGGKSDDFDALDEVISQW + IDAIRSGRVQKYIPEDLIPKNPNTGELLKPNAFDNQFIKIGSSLAEDAKTQISTVQPQ + IMFEAFVASYASILDVCLQGIISPSTLGIDLKKTDNAEAQREKEKATLYTRGKIIDAL + NEVIPQLVAIVLKVYDLMQEHTAGEYEASVAFGEYASPSFDTVVETVGKAKSYGIMSL + ERCVEELYGDTWTDEDKAKEVARLKSEQAPAFDEPSVAGQDGEIDGDGEV" + gene complement(3596097..3597449) + /locus_tag="Ccel_3050" + CDS complement(3596097..3597449) + /locus_tag="Ccel_3050" + /inference="similar to AA sequence:KEGG:CPF_0949" + /note="KEGG: cpf:CPF_0949 putative phage terminase, large + subunit" + /codon_start=1 + /transl_table=11 + /product="putative phage terminase, large subunit" + /protein_id="ACL77342.1" + /translation="MSQENLILSDKYKAFIRHSAPVEFLEGTTAAGKTTVGIFKFMLL + VAESKKKYHIIAAKDTGTAEKNIINKDLGIVDDFGVLTEYNGNGTKDEKIPHILYHTS + KGDKIVYVMGYGDKKKWQKALGGQYGCLYIDEINTADIDFVRESFMRADYVMATLNPD + DPNLPVYKEYINCSRPLPEYKNDAPSEINNMLKEEPKPGWVHWFFSFAHNLGLSKEKI + DQIIMNVPKGTKLYKNKIQGLRGRATGLIFGNFTRGKNVITREQAKKYKYLYFSAGLD + TSYSQESPDTFAFIYIGITDKRKVVVLDEEVYNNANLDIPLAPSDIAPRFFKFLEKNR + KVWGFARDTFVDSADQATITELNKYKREHACLYNFLNAYKKITIIDRIHLQLGWINCN + GSVFYEVVETCKNHIGELESYSWKEDKYEPEDANDHTINASQYAWIPFKTKIGDYKEA + " + gene complement(3597452..3597964) + /locus_tag="Ccel_3051" + CDS complement(3597452..3597964) + /locus_tag="Ccel_3051" + /inference="protein motif:PFAM:PF03592" + /note="PFAM: Terminase small subunit; + KEGG: bpt:Bpet0975 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Terminase small subunit" + /protein_id="ACL77343.1" + /db_xref="InterPro:IPR005335" + /translation="MAKLTAKQEMFIQEYLIDLNATQAAIRAGYSTKTANEIGAENLT + KPSIRTRIDEALAERSRRLGISQDRVVNELAKIAFVNPADVMDFDNATVSSTAKKDDT + AAILSVKVKKSFSETGETTEREVRMNDKVKSLELLGKHLGMFKDKVEISVLDKEKSKL + DSVIEQMRGG" + gene complement(3598019..3598348) + /locus_tag="Ccel_3052" + CDS complement(3598019..3598348) + /locus_tag="Ccel_3052" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77344.1" + /translation="MILSVLGNIWSKLPFAKIYRYIKNKFNEHIYIECGVKKNTYQDT + EDGFIYTEKNNEKDGPFCPQCWYGKGRRIPLVHLHDGVYKCNLCEQHKYAANYKRPSP + FLKIPPR" + gene complement(3598547..3598981) + /locus_tag="Ccel_3053" + CDS complement(3598547..3598981) + /locus_tag="Ccel_3053" + /inference="similar to AA sequence:KEGG:CKL_4074" + /note="KEGG: ckl:CKL_4074 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77345.1" + /translation="MKKDHIRDYATEAFRFYAKSGGKESYIKYLMDDIIKSKGNGVCN + PTESTLISKEKIMETRAAEFADIEAVDRVLAILVKSYQGNYIRKAIEMVYFKDCWKNT + EKGEISKRIHYAEIHIPASERQIYRWLKRARILFAEERGLRF" + gene complement(3598994..3599179) + /locus_tag="Ccel_3054" + CDS complement(3598994..3599179) + /locus_tag="Ccel_3054" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77346.1" + /translation="MPDEEQIQKWKDKIEWYKGAYFGMYGKQPSEKLIESYCSIYHIP + WPLPKANVIVDEWDFLD" + gene complement(3599179..3600552) + /locus_tag="Ccel_3055" + CDS complement(3599179..3600552) + /locus_tag="Ccel_3055" + /inference="protein motif:PFAM:PF00176" + /note="PFAM: SNF2-related protein; + SMART: DEAD-like helicases; + KEGG: drm:Dred_1198 SNF2-related protein" + /codon_start=1 + /transl_table=11 + /product="SNF2-related protein" + /protein_id="ACL77347.1" + /db_xref="InterPro:IPR000330" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MKFKPHKYQEYAIERIMDTPAVGLFLEMGLGKTVITLTALDELL + YDRFEASRILIVAPLRVAEDTWSRESQKWDHLKHLTISKILGSRSQREKALKADADLY + IINRENVPWLVSMTGSDWPFDTVVIDELSSFKSPSSQRFRALRRNRPLINRIIGLTGT + PTPNGLLDLWSQIYLLDQGQRLGKTITGYRERYFTAGARSGYVVYDWKQKKEAEEVVF + NKISDICVSMKSEDWLELPERIDRVVPVKLDESAKAKYRKLERDLLLPLVDGDIVANT + AAVLSNKLLQFANGAVYNENQEIQKIHNAKLDALEDILEAANGHPVLLFYSYKHDLSR + IQERFTQTRTLRKGPEGSKDIADWNSGKIQLLAVHPGSAGHGLNLQDGGSIIVWFGLT + WSLELYQQANARLHRQGQKQSVIIHHLVADGTIDEDVMRALEDKATGQDALMEAVKAR + IERVRDE" + gene complement(3600542..3600802) + /locus_tag="Ccel_3056" + CDS complement(3600542..3600802) + /locus_tag="Ccel_3056" + /inference="protein motif:PFAM:PF08774" + /note="PFAM: VRR-NUC domain protein; + KEGG: cbf:CLI_2427 VRR-NUC domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="VRR-NUC domain protein" + /protein_id="ACL77348.1" + /db_xref="InterPro:IPR014883" + /translation="MRESKIEKTLKKSVEAKGGKCLKFVSPGMSGVPDRICLYPGGKI + IFVETKAPNKKPRPLQEKRHNELRSLGFEVRVIDSEAEANEI" + gene complement(3601092..3603461) + /locus_tag="Ccel_3057" + CDS complement(3601092..3603461) + /locus_tag="Ccel_3057" + /inference="protein motif:PFAM:PF05272" + /note="PFAM: virulence-associated E family protein; + KEGG: cbf:CLI_2429 putative virulence-associated protein + E" + /codon_start=1 + /transl_table=11 + /product="virulence-associated E family protein" + /protein_id="ACL77349.1" + /db_xref="InterPro:IPR007936" + /translation="MLEISFGKNRSDTNWKPDYMEWEEFVEILRKVRRTNETMAEYDR + MTKNDKDKIKNGRAFVGGLVKGGRRKKENIENRWLITLDADNADDDFLFCVDLILGGT + AYAVYSTHSCRPNKLKYRLVCPVNRALSPDEHAAVSRKLADKIGMTYFDKTTFDVHRL + MYLPSCSKDATPILEISEGEPVNVEDILNEYLDWRDPEEWPKHPDSEKNISATLQKLG + DPVEKPGVIGVFCQVYGMQEGIETFLSEVYSPTNDENRWTYTGGTSFGGMRIYDNAWA + YSEHQSDPTNDGHCHNIFDMVRIHKFGYLDADVKEHTPGTKLPSHQAMLEFAANDPEV + KRIRLQQDFDEDMEEPISINDEPPQNWESKIKVNAKTGMPFPTAKNAEIILRNGPFYK + TLAYDAFGNAEVIRGPLPWRQRERPHQEYEPWLGADDKRMLHYFGKKYEFKATATIQN + AFTEVVHKNTFHPIKEYLGSCQWDGVNRLEEIFITYLGAEDSRYVRTVTRKMLIAAVK + RLYEPGCKFDYMLVLVGPQGAGKSSLLAKLGRKWFSDSLRNFENKEAGEHLQGAWIFE + LGELSAMKKSELEEVKAFLSKTEDRYRVAYDRQVSEFPRKCIFFGTTNNHNFLQDPTG + NRRFWPVDVDPDKRKLDHWDYLKDEEIGQIWAEALTLYKAGESLELDKKTAREAERMQ + GIHTETDPREGLIQRYLETKLPADWDEKDVWERRNYLEEPTGDIPRTRVCAAEIWAEA + LRLDPAKFGAWEARPIYDILRKLPDWKERKGRLTFKLYGKQTTYEKIGQ" + gene complement(3603481..3603897) + /locus_tag="Ccel_3058" + CDS complement(3603481..3603897) + /locus_tag="Ccel_3058" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bwe:BcerKBAB4_4105 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77350.1" + /translation="MKFYIASRLENSYMVRSLSKVLKAYGLEHTYDWTKHGSVKTEEQ + TRIIQVAELELQGVKDADVVIVLLPGGRGTHAELGIANALRKKVFLWAETDELFLQDD + RTCAFYWNINVERVVGDKFKLIERIFRYEEEQRIGH" + gene complement(3603909..3604886) + /locus_tag="Ccel_3059" + CDS complement(3603909..3604886) + /locus_tag="Ccel_3059" + /inference="protein motif:PFAM:PF01555" + /note="PFAM: DNA methylase N-4/N-6 domain protein; + KEGG: drm:Dred_1193 DNA methylase N-4/N-6 + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="DNA methylase N-4/N-6 domain protein" + /protein_id="ACL77351.1" + /db_xref="InterPro:IPR001091" + /db_xref="InterPro:IPR002941" + /translation="MQQVFNQTLTERWVMYHGDCIEVLKGIPDNSIHYSVFSPPFASL + YTYSNSERDMGNCRSEDEFYLNFEFLVAELYRVLMPGRLLSFHCMDIPAMKERDGYIG + LKDFPGDLIKIFQSGDFIYHSKVVIWKDPLVEATRTKALGLLHKQIQKDSSLCRQGLP + DYLVTMRKPGKNPELIAHPEGFTSFVGENEPDAPKIERPVPDADAYAKHEAYNKDPVY + SHQVWRRYASPVWMDIKQSNTLNRKPARDDRDERHICPLQLDVIERALQLWTNPNDIV + LSPFAGIGSEVYKAVQMGRRAVGIELKESYYTQAVINCRSLEPELDFLD" + gene complement(3604870..3606252) + /locus_tag="Ccel_3060" + CDS complement(3604870..3606252) + /locus_tag="Ccel_3060" + /inference="protein motif:PFAM:PF00271" + /note="PFAM: helicase domain protein; + SMART: DEAD-like helicases; + KEGG: drm:Dred_1192 helicase domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="helicase domain protein" + /protein_id="ACL77352.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MDYNSFLLKKRFILESSGFEINKYDLNLMLYEFQCDIVRCSLAR + GKSAIFADCGLGKTPMQLEWGYQVHDYTGGNVLLLAPLAVAEQTKREAEKFNIPVTVC + RSQSDVKPGINITNYEMLNHFVANKFDGIILDESSILKNYNSKMRNQIIENFSQTPFR + LACTATPAPNDFMEMGNHCEFLGIMSRAEMLSMYFVHDGGNTSKWRLKRHAEDVFWQW + MASWSIFLSNPADLGYDGTNYILPKLIIHEHIVDGDEPIREPLTLTQRRQARKDSIDL + RVKKAADIAQSVDGQCLIWCDLNSESEMLKNAIPGAVEVKGSDSPEHKKTAMLGFSKG + EVKDLVTKPSIAGFGMNWQTCSDMIFVGLSDSYEQYYQAVRRCYRFGQKKPVNVHIVI + SAKEGCVKDNIERKTSDSLKMQNAMIEYTKEITKKELQSIKRITTPYNPQMKIKLPQW + EEMIKSAASF" + gene complement(3606288..3606437) + /locus_tag="Ccel_3061" + CDS complement(3606288..3606437) + /locus_tag="Ccel_3061" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77353.1" + /translation="MKLNFIKKIRSVGFMPCTYGICDECQGVNDCDYCDDFIPGLFID + DEFEN" + gene complement(3606409..3608367) + /locus_tag="Ccel_3062" + CDS complement(3606409..3608367) + /locus_tag="Ccel_3062" + /inference="protein motif:PFAM:PF00476" + /note="PFAM: DNA-directed DNA polymerase; + KEGG: drm:Dred_1191 DNA-directed DNA polymerase" + /codon_start=1 + /transl_table=11 + /product="DNA-directed DNA polymerase" + /protein_id="ACL77354.1" + /db_xref="InterPro:IPR001098" + /translation="MKKILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEP + ITVIDLADFEELPEQVTKDLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVH + ALTLGLPGNLDGVAKVLGLDAQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDK + WKQFKDYCKQDVVVERAIRKKIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALK + CDLQYATRLDAEAKELTGLDNPNSTTQLTVWLKKQGLTVDNGLGKDYIPGLLDQAKGD + ETVTRMLELRKEMSKTSTKKYEAMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQN + LPQNKIPDLGVARELLHSGKFEAIELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSA + IEARVIAWLAGESWRMKVFKSHGKIYEASASHMFHVPIEEITKGNPLRQKGKIAELAL + GYGGSIGALEAMGALKMGLDADELPDLVTAWRNSNPKIVKLWWDVDKAAMTAVREHMP + VRIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALTYEGMDQIKKTWERI + DTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDVPNTDTDALAQVN + EIMSQPIDWAPGLPLRADGYETEFYKKD" + gene complement(3608381..3608614) + /locus_tag="Ccel_3063" + CDS complement(3608381..3608614) + /locus_tag="Ccel_3063" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77355.1" + /translation="MAEFCSCGSLIIHGNCTKKGCQFHKNSLVDPATYAQIEYIKSLL + AQTDSDMEVNFDVIAKSEASRLIDELLKQKELQ" + gene complement(3608653..3608928) + /locus_tag="Ccel_3064" + CDS complement(3608653..3608928) + /locus_tag="Ccel_3064" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77356.1" + /translation="MAYKENGIRMAPFETFKEHNERANSDEPYNEDFINRCRAKALEY + DNEPFFGVSCLYEIKLSIPMHYRDKVLEGTKSTLGFEQHLKDIGLRY" + gene complement(3609012..3609578) + /locus_tag="Ccel_3065" + CDS complement(3609012..3609578) + /locus_tag="Ccel_3065" + /inference="similar to AA sequence:KEGG:Dred_1189" + /note="KEGG: drm:Dred_1189 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77357.1" + /translation="MATTNTDTKVITGKVRLSYAHLFTPASIDDSQDPKYSVCLLIPK + SDKDTVKKIKAAIEAAKQAGADKIKNKAGKIPADLKIPLRDGDEERAEDNPEYAGHYF + INASSKQKPGIIDRYKNEITDSTEVYSGCYARASVNFYAFNTAGNKGIACGLNNIQKI + ADGDYLGGRSRAEDDFDEIEDDEDDLLD" + gene complement(3609595..3610830) + /locus_tag="Ccel_3066" + CDS complement(3609595..3610830) + /locus_tag="Ccel_3066" + /inference="similar to AA sequence:KEGG:Dred_1188" + /note="KEGG: drm:Dred_1188 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77358.1" + /translation="MGNTQRAHAILSASGSKRWLSCPPSAKLEEQFPESTSEFAEEGT + YAHSFAELKLRGYITTDLKPSVYKKKLAEIKKDPFYSQSLDDYIEQYINIVGEKYLAA + KKNSSDSFVMLEQKLDFSEWVPDGFGTGDVVLISPGILEIVDLKYGQGVPVSAEGNTQ + MRLYALGALNQYGMLYDFDKIKMTIIQPRLDSISEDEITVQELLDWGESVVKPTADMA + IAGEGEFKSGDHCQFCRAKAVCRKRAEDNLEMARYEFEDPNILSNDEIADILAKAAEL + QKWASDVQAYALDQAENHGVKFTGWKLVEGRSNRKYTDEDAVATKLKDEGYASDVIYQ + PQKIWGISEMEKKIGKRLFADYLTEFVVKPAGKATLVPESDKRPEISSVASAVRDFDD + LYENKLQHETEKIPDDILN" + gene complement(3610832..3611233) + /locus_tag="Ccel_3067" + CDS complement(3610832..3611233) + /locus_tag="Ccel_3067" + /inference="similar to AA sequence:KEGG:Dred_1187" + /note="KEGG: drm:Dred_1187 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77359.1" + /translation="MEITVNVNVKAPEVVEAITALVVAMGSTKSVVAELGRDAGAKQT + TSKGDKPKEQNTKPPKETKEETKNEEQPKVDEEGQSEEKITLEQVRAKLAELTRAGKP + IKQLITKFGASKLSEIPAEKYAEVLKEAEGL" + gene complement(3611258..3611833) + /locus_tag="Ccel_3068" + CDS complement(3611258..3611833) + /locus_tag="Ccel_3068" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hit:NTHI1489 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77360.1" + /translation="MKGFKGFDKNLICDPTGSSPFQYEIGKDYEHDGEVEACSTGFHF + CENPMDVLGYYPPNDSRYCEVEGDGEIDKESDGDSKVAASKIHISAEIGLKGIIEAGV + KFILDKVNWKDAKVTNTGDQSVACALGIESKARGALGCWLVIAEWEYNRNDYEWHRKD + VKCALVDGEIIKDDTWYTLKDGNFVEVTEEK" + gene complement(3611892..3612179) + /locus_tag="Ccel_3069" + CDS complement(3611892..3612179) + /locus_tag="Ccel_3069" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77361.1" + /translation="MKAACSKCGQPWNVSVHKKLNKPYVCPRCSKVKKMVLTAVGFII + CCVAVPKLNRIVNVQRGYSAGGGEVLIPLLYLVVVGFIKTVLDYKKENAHQ" + gene complement(3612179..3612424) + /locus_tag="Ccel_3070" + CDS complement(3612179..3612424) + /locus_tag="Ccel_3070" + /inference="protein motif:TFAM:TIGR01439" + /note="TIGRFAM: transcriptional regulator, AbrB family; + PFAM: SpoVT/AbrB domain protein; + KEGG: cth:Cthe_2100 AbrB family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AbrB family" + /protein_id="ACL77362.1" + /db_xref="InterPro:IPR006339" + /db_xref="InterPro:IPR007159" + /translation="MKATGIVRKVDELGRVVLPIELRRTLDIEEKDSLEILVDEETIV + LKKYEPACVFCGNAKDVIVYKGKNICPDCMKELKGAK" + gene complement(3612393..3612593) + /locus_tag="Ccel_3071" + CDS complement(3612393..3612593) + /locus_tag="Ccel_3071" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77363.1" + /translation="MKHGRKLTVRLKEFLQDRDIKANQYLQVKNMPNELHFVHKISGR + VRIFIKREDGNWYESNGNCKKS" + gene complement(3612598..3612852) + /locus_tag="Ccel_3072" + CDS complement(3612598..3612852) + /locus_tag="Ccel_3072" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77364.1" + /translation="MLKKWLKRTQWKTSLGWYRVKLWCGWWYCERCEKMHSPFKSKYE + FSEKGNFECSQGVYDLPVPIAYEGDPDYFYSLAKDLHKVG" + gene complement(3612856..3613389) + /locus_tag="Ccel_3073" + CDS complement(3612856..3613389) + /locus_tag="Ccel_3073" + /inference="protein motif:PFAM:PF07463" + /note="PFAM: NUMOD4 domain protein; + KEGG: ser:SERP1512 HNH endonuclease family protein" + /codon_start=1 + /transl_table=11 + /product="NUMOD4 domain protein" + /protein_id="ACL77365.1" + /db_xref="InterPro:IPR010902" + /translation="MKKVPEYWVMVPGSEKYQVSNYGHFRRILKNGTTKPIKTYPKHN + KWNVVKVDFYGKYAERVVHTIVASVFLDSPATPGLILHHKNGFKFDDYAGNLEWISRQ + DLGRITGGKTSRVIPVIKLDPKTGEVLNFYNSISSAARDNFIHKETICQVIRGQLKTA + AGFGWRREEWGDFEGGD" + gene complement(3613463..3613597) + /locus_tag="Ccel_3074" + CDS complement(3613463..3613597) + /locus_tag="Ccel_3074" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77366.1" + /translation="MRIPISAQKDLSTGETTYQYIEIDEKVLTDFFKNKFDRVEQNAT + " + gene complement(3613630..3613947) + /locus_tag="Ccel_3075" + CDS complement(3613630..3613947) + /locus_tag="Ccel_3075" + /inference="protein motif:SMART:SM00530" + /note="SMART: helix-turn-helix domain protein; + KEGG: bat:BAS3545 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77367.1" + /db_xref="InterPro:IPR001387" + /translation="MLKKIKQLCSQNNLTISELEKKLNFGNGTIHKWGNAQPSVSKVK + SVADYFNVDVNYLIYEDSYIFANKETMNVAKEYEELTDSQKALVRSYILLFKNGQPLQ + PES" + gene 3614180..3614530 + /locus_tag="Ccel_3076" + CDS 3614180..3614530 + /locus_tag="Ccel_3076" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: spv:SPH_0073 repressor protein" + /codon_start=1 + /transl_table=11 + /product="helix-turn-helix domain protein" + /protein_id="ACL77368.1" + /db_xref="InterPro:IPR001387" + /translation="METLYDRIQKLCKENGTNIAALERACGLGNATIKKWSNSTPSGD + KLSKVADYFNVTTDYLLGRDNNSKELSPTAKKLVVLARRAEEIPKEQRDELIKYFENT + IDIYLKAKGLNKED" + gene 3614535..3615125 + /locus_tag="Ccel_3077" + CDS 3614535..3615125 + /locus_tag="Ccel_3077" + /inference="protein motif:PFAM:PF06114" + /note="PFAM: protein of unknown function DUF955; + KEGG: sha:SH1806 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF955" + /protein_id="ACL77369.1" + /db_xref="InterPro:IPR010359" + /translation="MINCSCKPNFNLAEKTATKLLLLQNNLSLRIDVKLLKYNKNVIF + DTFQSYSNLVGVSLLEFSENGVLNDGCVVDLGHTKLILYDAYNNNQERLNFTLAHEVG + HIYLDHKKDGPIEEVEANFFAAQLLMPEIAILELSKRLDVLDYFTLYMLFNVTMPAAQ + KRIDTISRKYRYNNGYDEQQLLHKFKDEIERVCNLI" + gene 3615122..3616570 + /locus_tag="Ccel_3078" + CDS 3615122..3616570 + /locus_tag="Ccel_3078" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: tex:Teth514_0698 recombinase" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77370.1" + /db_xref="InterPro:IPR005829" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MSSVKCVIYARYSSTKQDEISIEAQVRACKEYAANRDYIVLKVY + TDEAISGKGTKTQSRKQYQALLRDSKQGSFDVVLVHRYDRIARNVGEHVNLELKLSEN + NISLVAVSQDFGQSKEAKIMKTMMWALSEYYIENLADETKKGHREVALKGLHNGGCPP + FGYDIKNQQYIINEKEAYFVKKIFNCALKKEGFKEIVSEINKSGMVGKRGKPIRYTQV + YEILRNEKYTGVYKYSLNEESNRSLRRAKPNAIRIEGALPQIINKALFLEVQKIMDER + KQTGKKSNYLCSGLVYCGNCGSKMYGTITRRKGHEYKIFYCHNKCGTGTVSMDEIDKT + VQEYITQLLSPGTILSISNTLKEYASNEKKRVNEFNSSIKLQIDEKQKQINNYMISLG + SGVLPAEVISDIGNQIVSLKNEIKVLAEMPVPKDYTTKEINAWLNNLRKSTNERDTVL + LLVERIDATKTAINVKSTLTTVLCENGCGSRT" + gene complement(3616549..3616624) + /locus_tag="Ccel_R0074" + /note="tRNA-Met3" + tRNA complement(3616549..3616624) + /locus_tag="Ccel_R0074" + /product="tRNA-Met" + gene 3616874..3617500 + /locus_tag="Ccel_3079" + CDS 3616874..3617500 + /locus_tag="Ccel_3079" + /inference="protein motif:PFAM:PF00160" + /note="PFAM: peptidyl-prolyl cis-trans isomerase + cyclophilin type; + KEGG: cth:Cthe_0068 peptidylprolyl isomerase" + /codon_start=1 + /transl_table=11 + /product="peptidyl-prolyl cis-trans isomerase cyclophilin + type" + /protein_id="ACL77371.1" + /db_xref="InterPro:IPR002130" + /translation="MIKNLIRKKAFFIVASLIFTILLSGCGKPGSQSNSNQPSGHPRI + QFEMEGGDKMTFELYPEYAPETVENFVSLAESGFYNGLTFHRIIKGFMVQGGDPNGNG + SGGSDKNIKGEFSSNGFTQNTLKHTKGIISMARSNDPDSASSQFFIMDGTAATLDGGY + AAFGKLTSGEETLDKIASTPVKANPSMRGEVSVPTEKVIIKSVTVLEK" + gene complement(3617648..3617736) + /locus_tag="Ccel_R0075" + /note="tRNA-Leu3" + tRNA complement(3617648..3617736) + /locus_tag="Ccel_R0075" + /product="tRNA-Leu" + gene complement(3617834..3618268) + /locus_tag="Ccel_3080" + CDS complement(3617834..3618268) + /locus_tag="Ccel_3080" + /inference="protein motif:PFAM:PF00575" + /note="PFAM: RNA binding S1 domain protein; + KEGG: cth:Cthe_2662 RNA binding S1" + /codon_start=1 + /transl_table=11 + /product="RNA binding S1 domain protein" + /protein_id="ACL77372.1" + /db_xref="InterPro:IPR003029" + /translation="MPLEVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVK + DVSAHLKENQIVKVKILSVDTNGKVSLSIKKAMAGGPTTVPKFRPPAEVDWNAGKNNS + VNVSFEDRLAKFMKDSDEKLHDLKKSVESKRGSSGYRKSAQY" + gene complement(3618389..3618667) + /locus_tag="Ccel_3081" + CDS complement(3618389..3618667) + /locus_tag="Ccel_3081" + /inference="protein motif:PFAM:PF04977" + /note="PFAM: Septum formation initiator; + KEGG: cth:Cthe_2661 septum formation initiator" + /codon_start=1 + /transl_table=11 + /product="Septum formation initiator" + /protein_id="ACL77373.1" + /db_xref="InterPro:IPR007060" + /translation="MKKRKKFNIWTLILIAAFCYFVYTVYHQQALLEVGNTKLSDLKA + NIHSEEVKKQQLEKQKSMINTDEFAEKIARDKLGYVKDGEKIYIDTNK" + gene complement(3618746..3619285) + /locus_tag="Ccel_3082" + CDS complement(3618746..3619285) + /locus_tag="Ccel_3082" + /inference="similar to AA sequence:KEGG:Cthe_2660" + /note="KEGG: cth:Cthe_2660 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77374.1" + /translation="MSLIVEQVYIFLYAVLAGGILAFLYDILRIKRRAIKTNVVILSI + EDIVYWLLSAIIVFFTVYNINDGQMRGFIFIGNILGVTLYLSLFSRIVIASSMLVINF + IKKVVFFIWKVITYPFRLLFKILSVPLRFIGRCFGKLGRLLFRISGKAAHKAKGAAGS + GVKKVKVWGKFIRKVRKKT" + gene complement(3619310..3619594) + /locus_tag="Ccel_3083" + CDS complement(3619310..3619594) + /locus_tag="Ccel_3083" + /inference="protein motif:TFAM:TIGR02892" + /note="TIGRFAM: sporulation protein YabP; + PFAM: YabP family protein; + KEGG: cth:Cthe_2659 YabP-like protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YabP" + /protein_id="ACL77375.1" + /db_xref="InterPro:IPR012504" + /translation="MEEKKTTKPTNQTITLDNRERLCVSGVVDVESFNEENIIAVTDL + GVLIIRGTEMHINKLNLDCNELVVDGDIFSLEYSDGETGKSKSFFGKMFK" + gene complement(3619722..3619961) + /locus_tag="Ccel_3084" + CDS complement(3619722..3619961) + /locus_tag="Ccel_3084" + /inference="protein motif:PFAM:PF01479" + /note="PFAM: RNA-binding S4 domain protein; + KEGG: cth:Cthe_2658 RNA-binding S4" + /codon_start=1 + /transl_table=11 + /product="RNA-binding S4 domain protein" + /protein_id="ACL77376.1" + /db_xref="InterPro:IPR002942" + /translation="MRIDKYLKVSRLIKRRTVANEVCEQGRVKINDRIAKPGSEVKVG + DIVEIQFGNNITKIEITRITEHVAKDDAKEMYMLK" + gene complement(3620104..3620379) + /locus_tag="Ccel_3085" + CDS complement(3620104..3620379) + /locus_tag="Ccel_3085" + /inference="protein motif:PFAM:PF00216" + /note="PFAM: histone family protein DNA-binding protein; + KEGG: tpd:Teth39_0249 histone family protein DNA-binding + protein" + /codon_start=1 + /transl_table=11 + /product="histone family protein DNA-binding protein" + /protein_id="ACL77377.1" + /db_xref="InterPro:IPR000119" + /translation="MNKSELIDKMAEKSGLTKKDSDKALNAMLESVEEALTGGDKVQL + IGFGSFEVKQRAARKGRNPQTMEEINIPESKAPVFKAGKDLKEMINK" + gene complement(3620416..3621210) + /locus_tag="Ccel_3086" + CDS complement(3620416..3621210) + /locus_tag="Ccel_3086" + /inference="protein motif:TFAM:TIGR00444" + /note="TIGRFAM: MazG family protein; + PFAM: MazG nucleotide pyrophosphohydrolase; + KEGG: cth:Cthe_2656 MazG family protein" + /codon_start=1 + /transl_table=11 + /product="MazG family protein" + /protein_id="ACL77378.1" + /db_xref="InterPro:IPR004518" + /db_xref="InterPro:IPR011551" + /translation="MNEGKLDRLIDIMKTLRSENGCPWDREQTYESLKRYFIEETYEY + LEAVDLNDKKKMVEELGDVLLQVVFHAVIASENGDFTMEDVINGICDKLIHRHPHVFG + NVKADTSSEVVENWEEIKKKEKGLVNQASVLQDVPKNLPALMRSYKVQQKAAQVGFDW + DDTSDVFAKIREEINELEQEVKKSDKAAIEDEMGDVFFSVVNLSRFYKVHPELSLTQS + TNKFIKRFEYIEKKAAEAGKDLGDMTLSEMDDLWNEAKMNKCEENG" + gene complement(3621322..3621744) + /locus_tag="Ccel_3087" + CDS complement(3621322..3621744) + /locus_tag="Ccel_3087" + /inference="protein motif:TFAM:TIGR00621" + /note="TIGRFAM: single-strand binding protein; + PFAM: single-strand binding protein/Primosomal replication + protein n; + KEGG: cth:Cthe_2186 single-strand binding protein" + /codon_start=1 + /transl_table=11 + /product="single-strand binding protein" + /protein_id="ACL77379.1" + /db_xref="InterPro:IPR000424" + /db_xref="InterPro:IPR011344" + /translation="MNNVSLVGRLTKDVDLRYTTKKMRAVGSFTLAVDRDLRKVTNGK + TADFIPIVTWGKTAEFASKYFSKGHRIALQGSIHTRVWEDEDKNRHYVTEVVADRVFF + ADAKQREFDEPGEEELKEAKYEQEIEELDEEVLSGDKA" + gene complement(3622161..3622715) + /locus_tag="Ccel_3088" + CDS complement(3622161..3622715) + /locus_tag="Ccel_3088" + /inference="protein motif:TFAM:TIGR02851" + /note="TIGRFAM: transcriptional regulator, AbrB family; + stage V sporulation protein T; + PFAM: SpoVT/AbrB domain protein; + KEGG: cth:Cthe_2655 AbrB family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AbrB family" + /protein_id="ACL77380.1" + /db_xref="InterPro:IPR006339" + /db_xref="InterPro:IPR007159" + /db_xref="InterPro:IPR014213" + /translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFTDKEGEV + ILKKYSPIGELSDFATQYAESLHKTSGHITCITDRDTVIAVSGASKKEFLEKQLSSDV + EKTIEEKTTLLIKSPEEKSISILAEENGERKYTSQVVSPIISEGDPIGAVIMLSTDAN + VRMGEVEAKLAQSAAGFLGKQMEQ" + gene complement(3622949..3624040) + /locus_tag="Ccel_3089" + CDS complement(3622949..3624040) + /locus_tag="Ccel_3089" + /inference="protein motif:PFAM:PF00639" + /note="PFAM: PpiC-type peptidyl-prolyl cis-trans + isomerase; + KEGG: cth:Cthe_2633 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="PpiC-type peptidyl-prolyl cis-trans isomerase" + /protein_id="ACL77381.1" + /db_xref="InterPro:IPR000297" + /translation="MENENAKVKKTSKGLIIGIIAAVLVVAVIAVVVIFSMSSGDVGK + VGELSITKQEYLVLSKFNMNSFLQNAQSADPAKFDWNQKYQGSTAKEQIKKATLDSIQ + EIKIQLIKAKEAGIKLEKTDLDNIEAAINQRIQNAGGSRSQADKQLKQDYGVSLADYK + EVYKELVLSQKYIESERNKVKVPDEEVKKQYDDHKADYDKVTVTHILIATQDLQTGAA + FTEGKKKEAKDKAENLLKQIQEGADMQALAEKNSDDKDQNGAVNNKGVYTFVKGQMVP + QFEDWAFANRKAGDTGIVETSYGYHVMRFEKREETKYDDVKDQIKSTILNKKFEDEFL + TKKLDSWKKVFPLKKDEDALAKIDKTLYK" + gene complement(3624126..3627650) + /locus_tag="Ccel_3090" + CDS complement(3624126..3627650) + /locus_tag="Ccel_3090" + /inference="protein motif:TFAM:TIGR00580" + /note="KEGG: cth:Cthe_2632 transcription-repair coupling + factor; + TIGRFAM: transcription-repair coupling factor; + PFAM: helicase domain protein; transcription factor CarD; + TRCF domain protein; type III restriction protein res + subunit; DEAD/DEAH box helicase domain protein; + SMART: DEAD-like helicases" + /codon_start=1 + /transl_table=11 + /product="transcription-repair coupling factor" + /protein_id="ACL77382.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR003711" + /db_xref="InterPro:IPR004576" + /db_xref="InterPro:IPR005118" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MNFFTDPLLKIDEYNTLLSNVREERGPVSVIGPSDSQKVHLIYS + LCTHLQKRGLYITYNEMQARRVYDDFSFFLGDDVLYYPPKETMLYNVEARSNDIIYQR + TKTLLNCLEGNYKMVVMSAEALIQMISPVELFREGIMDFYVGSQVNLDELVSKLVLYG + YERVESVEGKAQFAVRGGIIDVFAVNSEHPVRIELFDTDVDSIRHFDETTQRSTNSID + ECRIAPARDVVYKEVSREGIISKIKKDLADYIKKLKQKENREGVKNISKRVEEDIDSL + IEHHYFPGIDRYYPYILESPASVIDYIESESIIIMDETLRISQRIENVELEHEELAKS + LLEKGGILPKGAQWTFSTDSIVDRILNFRTITLSAISSNNSLIRPYNQISIPCKSGNS + YQNHIDLLVDDIGQLRKREYKIIVLSGPSGRGHRLVETLATNEIMSSYKEHPEYRIQN + GEVVVTHGSLQKGFEYPTAAFVVISDIEVFGQAKRIKKAKAKRAGNKIKAFSDLNIGD + FVVHQAHGIGQYIGIENLSVGEVKRDYLKIRYQEGDFLYIPTNQLDLLQKYIGSEGKT + PRVNKLGGTEWAKTKSRVKESLQQLAAELIKLYAQRQSAKGHSFSEDTVWQRQFEELF + PYQETDDQLKCIDEIKKDMESEGLMDRLLCGDVGYGKTEVAIRAVFKAVMDGKQVAYL + APTTILAQQLYENFKTRMNDFPVTVDVMSRFRTPAEQKKIVKSVKAGNTDILIGTHRL + LQKDVEFKDLGLLVIDEEQRFGVTHKEKLKTLKPNVDVLTLTATPIPRTLHMSLVGIR + DISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARDGQVFYMYNRVRGIDLKAQEI + RKMIPDARVAVAHGKMNEKELEDVMYGFINGEYDVLVCTTIIESGLDMPNVNTIVVED + ADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAIKEFTEFGSGFRI + AMRDLEIRGAGNLLGSEQHGHLETVGYEMYCKLLDEAVQELSGKEVRTTDEEMAVDLN + VNAYIDNEYISSEEQKIDMYKKIAAIQNENDVIDLKDELIDRYGDIPEEVENLMDIAY + IKALAVECGFIGIVQKDDTILFQLRKSASTVSKYLGVLMDKYPRRIMLNASSNPYLSF + KLIYSSGRENLANIKILLQYIIKLQYNE" + gene complement(3627671..3628240) + /locus_tag="Ccel_3091" + CDS complement(3627671..3628240) + /locus_tag="Ccel_3091" + /inference="protein motif:PFAM:PF01195" + /note="PFAM: peptidyl-tRNA hydrolase; + KEGG: cth:Cthe_2631 peptidyl-tRNA hydrolase" + /codon_start=1 + /transl_table=11 + /product="peptidyl-tRNA hydrolase" + /protein_id="ACL77383.1" + /db_xref="InterPro:IPR001328" + /translation="MGEVYLFVGLGNPGTKFENTRHNVGFDTIDYISVKYNIKLSKIG + FKALYGEGSIEGIRTILVKPQTFMNLSGESVREIVDWYKLPLERLIVIYDDIDLEPGK + MRVRPKGSSGTHNGMKSIIYQLQDDSFPRVRIGIGRAPEKWDLADYVLSKFSKEDRQV + IDQSIVKAAQAAIMIAQSGTEKAMNSYNK" + gene complement(3628339..3629298) + /locus_tag="Ccel_3092" + CDS complement(3628339..3629298) + /locus_tag="Ccel_3092" + /inference="protein motif:TFAM:TIGR01251" + /note="TIGRFAM: ribose-phosphate pyrophosphokinase; + PFAM: phosphoribosyltransferase; + KEGG: cth:Cthe_2630 ribose-phosphate pyrophosphokinase" + /codon_start=1 + /transl_table=11 + /product="ribose-phosphate pyrophosphokinase" + /protein_id="ACL77384.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR000842" + /db_xref="InterPro:IPR005946" + /translation="MNLHGKDIKIFTGNSNRPLADEIAEKIGIPVGIANVGRFSDGET + AVNIGEVVRGSDVFIIQSTCQPVNDNLMELLVMIDAIKRASAGRITAVMPYFGYARQD + RKSRARDPISAKLVANLLTIAGADRILTMDLHAPQIQGFFDIPVDHLLGLPIIAEYFK + EKFAGLKDVVVVSPDVGSVTRSRKVAERLDCPLAIIDKRRPKANVSEVMNIIGDIRNK + KVILVDDMIDTGGTIVNGANALIEAGAKEVYASCTHGVLSGPAIQRINESAIKEMVTL + NTITLSEEKKIDKIKSLSVAGVFAEAIERIYGDISISTLFTQI" + gene complement(3629336..3630508) + /locus_tag="Ccel_3093" + CDS complement(3629336..3630508) + /locus_tag="Ccel_3093" + /inference="similar to AA sequence:KEGG:Cthe_2629" + /note="KEGG: cth:Cthe_2629 UDP-N-acetylglucosamine + pyrophosphorylase / glucosamine-1-phosphate + N-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylglucosamine pyrophosphorylase / + glucosamine-1-phosphate N-acetyltransferase" + /protein_id="ACL77385.1" + /db_xref="InterPro:IPR001451" + /translation="MNKIVGLVITDSNNSTFKSKNPVESHNIFGQSILQWSGSALAEI + TGETQSIDCDDIDRVKDLIGNSENFIINWGDQPLILAETFRHLLEKHISEGNDTTAII + SSNKKASIYVFKSKNFLNRLNELGIQSFSKFYIAQIFQSFQSKNMISSEDKTQFIVVD + DRVALSVAMEEIKSSILKKVMLSGVTIISPSSTFIDSGAVIGEDTVIMPNTIIEGNTV + IGEGSIIGPNSRIVNCRIGNNVEVANSVAYDSSVGDDTHIGPFAYLRPESKVGKNVKI + GDFVEIKKSVIGDRTKISHLTYVGDAEVGSNVNIGCGVVFVNYDGKNKNKTIVGDNSF + IGCNVNLVSPVVVKNDAYIAAGSTITDEVPENSLAIARQRQTIKQDWVTKKDLKRK" + gene complement(3630706..3630957) + /locus_tag="Ccel_3094" + CDS complement(3630706..3630957) + /locus_tag="Ccel_3094" + /inference="protein motif:PFAM:PF04026" + /note="PFAM: SpoVG family protein; + KEGG: cth:Cthe_2628 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="SpoVG family protein" + /protein_id="ACL77386.1" + /db_xref="InterPro:IPR007170" + /translation="MEITDIRIRKIETEGKMKAVVSVTFSNEFVVHDIKVIESQSGLF + IAMPSRKTPDGEFRDIAHPINAEAREKLQTAILESYKNS" + gene complement(3631087..3631899) + /locus_tag="Ccel_3095" + CDS complement(3631087..3631899) + /locus_tag="Ccel_3095" + /inference="protein motif:TFAM:TIGR01743" + /note="TIGRFAM: pur operon repressor; + PFAM: phosphoribosyltransferase; purine repressor; + KEGG: cth:Cthe_2627 purine operon repressor" + /codon_start=1 + /transl_table=11 + /product="purine operon repressor, PurR" + /protein_id="ACL77387.1" + /db_xref="InterPro:IPR000836" + /db_xref="InterPro:IPR010078" + /db_xref="InterPro:IPR015265" + /translation="MDKIQRNERLSVIIKTLCDNPNKVFTLGYFSEMFGSAKSTISED + LDLLQKTFKKNSMGNICTIAGASGGVKYIPSVSEMDVRETLEELAKELSHPDRILSGG + FLYMLDIIYNPKWVNKVAMIFATKFSGLGIDCVITVETKGIPIAFATAQYLNVPLVIV + RHNNEATDGASVNINYASGSAKKIQTMVLPMKSLKRNSKILFIDDFMKAGGTSKGIIE + LANQFDSKVVGIGVMIETGLPVKKLVGNYHSLMKLNTSEMQENNSIDIKPNI" + gene 3632183..3633586 + /locus_tag="Ccel_3096" + CDS 3632183..3633586 + /locus_tag="Ccel_3096" + /inference="protein motif:TFAM:TIGR01082" + /note="TIGRFAM: UDP-N-acetylmuramate/alanine ligase; + PFAM: cytoplasmic peptidoglycan synthetase domain protein; + Mur ligase middle domain protein; + KEGG: cth:Cthe_2626 UDP-N-acetylmuramate--L-alanine + ligase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylmuramate/alanine ligase" + /protein_id="ACL77388.1" + /db_xref="InterPro:IPR000713" + /db_xref="InterPro:IPR004101" + /db_xref="InterPro:IPR005758" + /db_xref="InterPro:IPR013221" + /translation="MNINSNILDCEKIKYVHFVGIGGSSMSGLAEILLAKGYKVSGSD + IKSSNSTQKLEAKGAEIFIGHRSENITDQDLTVYTVAVKEDNPEITRSKELGLPVIDR + AELLGLLMKKHSFGIAVAGTHGKTTTTSMITTIMLESNTDPTAHIGGELDCIGGNTRI + GNSEFFITEACEYYGSFLKFHPFMAVVLNIELDHVDYFRDLEHIKSIFGEFLALVPND + GYIVACADDENTLSVVSKKECNIITYGLKNKDAMWTAKGITYNSMGCASFDVYKKGEK + VGNVSLSVPGPHNVNNSLAAIAVAYTCGCSMENIAYGLSRFGGSHKRFELKGLVDNIK + VIDDYAHHPSEVQATLNAAKSSNHNKIWCVFQPHTYTRTKAFLDRFSKSFGEADNIII + TDIYAAREKDPGDIHSSMLADRIRENGGNAVYISDFQDIAEYLDKKVEPGDLILTMGA + GDIVRIGEMFLNLRANK" + gene complement(3633928..3634356) + /locus_tag="Ccel_3097" + CDS complement(3633928..3634356) + /locus_tag="Ccel_3097" + /inference="protein motif:TFAM:TIGR01750" + /note="TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) + dehydratase FabZ; + PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase + FabA/FabZ; + KEGG: cth:Cthe_2625 3-hydroxyacyl-[acyl-carrier-protein] + dehydratase" + /codon_start=1 + /transl_table=11 + /product="beta-hydroxyacyl-(acyl-carrier-protein) + dehydratase FabZ" + /protein_id="ACL77389.1" + /db_xref="InterPro:IPR010084" + /db_xref="InterPro:IPR013114" + /translation="MLTNKEIRELLPHRYPFLLVDKVIELEPGKKVVAVKNVSANEPF + FQGHFPEYPIMPGVLIVEALAQAAGIAVAVLEDNKGKLGVFAGIEAMKFKNQVMPGDV + LTLEAEILVSKLGVTKAKVKASVDGKVAAEGEIKFAMTKA" + gene complement(3634475..3635626) + /locus_tag="Ccel_3098" + CDS complement(3634475..3635626) + /locus_tag="Ccel_3098" + /inference="similar to AA sequence:KEGG:Cthe_2623" + /note="KEGG: cth:Cthe_2623 exopolysaccharide biosynthesis + protein" + /codon_start=1 + /transl_table=11 + /product="exopolysaccharide biosynthesis protein" + /protein_id="ACL77390.1" + /translation="MKKNNQKLIINIGLVLVLSFILIYAGQFLFSPNNNTPGKADNTL + NSPDTSSNSVQPLPVQYKSTTETINGYKQEIYMLEFDPRDERVEFKPALSFDNIFGFE + KLSDICKRNGAYAAVNGGFFYQFGDPAGMVAIDGQMLTTSTGLSPVLILDKMGARFET + FYSNIFLESKGNRVKINEMNRVGKNDDIILYIDKFGNTNRAEVKSTSLIVDNNKIISI + IESTKEVNIKKGMYVISFYGDKSSLPDKIGLKTGDKVNIRIEPYLGYNYQAYECGSML + VKNGKSVVPERDKWAGTLGNRDPRTVIGIKTNGKIVLVVADGRQPGYSEGMTGKEMGE + FLVKIGVRDAAMLDGGATSQMIINGRIQNRPSYEGIERPVAGCFIVKIK" + gene complement(3635613..3636002) + /locus_tag="Ccel_3099" + CDS complement(3635613..3636002) + /locus_tag="Ccel_3099" + /inference="similar to AA sequence:KEGG:Cthe_2622" + /note="KEGG: cth:Cthe_2622 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77391.1" + /translation="MDVGSINSKNTFDTARNTSSKISQDSFEKKLREAAAKGNDSELK + EVCHEFESLFISMLYKQMKATVPKSGYIESDTASEIYNSMLDDQLCEVASERGIGLGD + MMFKQLSKKYKQGDSAEVTGGVLDEKK" + gene complement(3636020..3636832) + /locus_tag="Ccel_3100" + CDS complement(3636020..3636832) + /locus_tag="Ccel_3100" + /inference="protein motif:PFAM:PF06429" + /note="PFAM: flagellar basal body rod protein; protein of + unknown function DUF1078 domain protein; + KEGG: cth:Cthe_2621 protein of unknown function + DUF1078-like protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1078 domain + protein" + /protein_id="ACL77392.1" + /db_xref="InterPro:IPR001444" + /db_xref="InterPro:IPR010930" + /translation="MMRALYTAGSGMKAQQFNVDVISNNLANVNTTGYKKERAEFKDL + LYQTMDRAYVLNDAGKPVNLQVGHGTVVSSTVRNFENGTPEQTSSNLDFAIDGEGFFT + IMGPQGTVQYTRDGSFKLSITEDGMKKLTTADGYAVLDNSGEEILFDPEVNISELSVS + PRGEMSYKDAEGVSVPMDQTIGMVIFPNKYALEAVGNNLYSSNSATGEPVQVSEDENA + KSIMKQGFLESSNVQVVDEMVKLIVAQRAYEVSSKAIQSSDDMLQIANNLRR" + gene complement(3636882..3637679) + /locus_tag="Ccel_3101" + CDS complement(3636882..3637679) + /locus_tag="Ccel_3101" + /inference="protein motif:PFAM:PF06429" + /note="PFAM: flagellar basal body rod protein; protein of + unknown function DUF1078 domain protein; + KEGG: cth:Cthe_2620 protein of unknown function + DUF1078-like protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1078 domain + protein" + /protein_id="ACL77393.1" + /db_xref="InterPro:IPR001444" + /db_xref="InterPro:IPR010930" + /translation="MIRGLYTSAWSMLANQKKLDVITNNMANVNTTAYKKDTVVYQSF + PEILTRRINDTQSPTNPSAVVGTMELSSDVGEVYTYYTQGQMVQTGDRYDLAIKDDNT + GEVASPAFFTVGVINPQDNTVQEFYTKNGSFSLDANNQLVTGDGYAVLGKKGPITLKT + GDFTVDSKGNIMQNGAVVDTLRIAQFADSTQLRKLGNNLVMNNGGEVAEFSGTVIQGF + DEQSNVNVIDEMVDMITVMRAYEANQKVLQAQDGTLEKAVNEIGLVR" + gene complement(3637812..3638840) + /locus_tag="Ccel_3102" + CDS complement(3637812..3638840) + /locus_tag="Ccel_3102" + /inference="protein motif:TFAM:TIGR00904" + /note="TIGRFAM: cell shape determining protein, MreB/Mrl + family; + PFAM: cell shape determining protein MreB/Mrl; + KEGG: cth:Cthe_2619 rod shape-determining protein MreB" + /codon_start=1 + /transl_table=11 + /product="cell shape determining protein, MreB/Mrl family" + /protein_id="ACL77394.1" + /db_xref="InterPro:IPR001023" + /db_xref="InterPro:IPR004753" + /translation="MGFGQDIGIDLGTATVLVYIKGKGIVLREPAVVAIDKNTNKLLA + VGEEARRMLGRTPGNIVAIRPLREGVISDYDITERMLKYFINKVTGSRRFFKPRIMVC + VPSGVTEVEKRAVIDASMQAGARKTYLIEEPIAAAIGAGIDIAKACGSMVVDMGGGTT + DIAVISLGGTVVSTSIKIAGDKFDEAIVRYMRKKHNIMIGERTAEELKINIGTVYPRV + QEVTMDIRGRNLISGLPKTITISSTEMMEALEEPISSIVEAVHSVLERTPPELAADIS + DRGIVMTGGGSLIYGLDKLLHEKTGINVIISDDSISCVALGTGRALDNIEAIEDSALV + EKRTNYRR" + gene complement(3639025..3640215) + /locus_tag="Ccel_3103" + CDS complement(3639025..3640215) + /locus_tag="Ccel_3103" + /inference="protein motif:TFAM:TIGR00231" + /note="TIGRFAM: small GTP-binding protein; + PFAM: GTP-binding protein HSR1-related; + KEGG: bth:BT_1837 putative GTP-binding protein, putative + GTPase" + /codon_start=1 + /transl_table=11 + /product="small GTP-binding protein" + /protein_id="ACL77395.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR005225" + /translation="MSLTNTPGANRLHIALFGRRNSGKSSLINTITGQDIALVSEIAG + TTTDPVYKAMELHPIGPVMFIDTAGFDDVGTLGELRIEKTRKVIDKTDIAIVIFSETE + LSMEKEWMNELKKRKIPVIPIINKADILNNTDDIKKQVEETLGLMPIIISAKEKTGLD + KVREELIRAVPEDFEVSSITAHLVNEGDFVLLVMPQDIQAPKGRLILPQVQVIRDLLD + LKCIVMSVTTDKLENALKAMSGPPKLIITDSQVFDKVYAKKPEESLLTSFSVLFAEYK + GDISAYIKGAEAIDALTENSAVLIAEACTHAPLSEDIGRVQLPRLLREKIGKGLTVDI + VSGSDFPKDLSKYSLVIQCGCCMFNRKYVLSRIESAKAQNVRICNYGIAIAKLRGILE + KVAL" + gene complement(3640231..3641643) + /locus_tag="Ccel_3104" + CDS complement(3640231..3641643) + /locus_tag="Ccel_3104" + /inference="protein motif:PFAM:PF06968" + /note="PFAM: Radical SAM domain protein; biotin and + thiamin synthesis associated; + KEGG: cbe:Cbei_4439 thiamine biosynthesis protein ThiH" + /codon_start=1 + /transl_table=11 + /product="biotin and thiamin synthesis associated" + /protein_id="ACL77396.1" + /db_xref="InterPro:IPR007197" + /db_xref="InterPro:IPR010722" + /translation="MYNSKSKKAEDFINDEEILETLEYARRNKENMSLIEDILKKAAE + YKGLSYREAAVLLECELDEVKEKVFGLAEHIKKKFYGNRIVMFAPLYLSNYCVNECRY + CPYHGSNKHISRKQLSQEDIVREVMALQDMGHKRLALETGEDPENCPIEYVLESIKTI + YGIKHKNGAIRRVNVNIAATTIENYKKLKDAGIGTYILFQETYHKPTYEYLHPKGPKH + NYAYHTEAMDRAMEGGIDDVGLGVLFGLNLYKYDFVGLLMHAKHLEDAMGVGPHTISV + PRIRPADDVDLKEYSNAIPDSIFEKIVAILRIAVPYTGIIMSTRESEKTRGECLKLGV + SQISGGSSTSVGGYVEKEAENSAQFEVNDTRTMDEVVNWLLTLGYIPSFCTACYREGR + TGDRFMRLVKSGAIAQVCHPNAIMTLKEYLEDYASEDTRAKGEKMIEKEVELLQNSDV + KRIVKEHLSDLHEGKRDFRF" + gene complement(3641703..3641948) + /locus_tag="Ccel_3105" + CDS complement(3641703..3641948) + /locus_tag="Ccel_3105" + /inference="similar to AA sequence:KEGG:Cbei_4440" + /note="KEGG: cbe:Cbei_4440 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77397.1" + /translation="METRIALIGIIVDDLSSAEKINLILHEFGKFIVGRMGIPYREKD + VSIISVVVDAPNDVISSLSGRLGMLRGVNIKTVYSKI" + gene 3642271..3642663 + /locus_tag="Ccel_3106" + CDS 3642271..3642663 + /locus_tag="Ccel_3106" + /inference="similar to AA sequence:KEGG:Cbei_4697" + /note="KEGG: cbe:Cbei_4697 Zn-finger containing protein" + /codon_start=1 + /transl_table=11 + /product="Zn-finger containing protein" + /protein_id="ACL77398.1" + /translation="MNWFRKFMIGRYGPDHLSAGLLFLSLLISLIGMFVPIKWFGYLS + YIPLLLCFYRLFSKNIYGRRAENNKFLKLWNPIAAWFLKKKTRIGDSKTHRYYKCPKC + QQEVRVPKGKGKIQITCPKCKAEFIRKS" + gene complement(3642699..3642866) + /locus_tag="Ccel_3107" + CDS complement(3642699..3642866) + /locus_tag="Ccel_3107" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tme:Tmel_0283 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77399.1" + /translation="MILENGLKECNCKKKSCIRHGKCAECLKYHKENSKYLPYCKRKK + VNPSKLIKGSK" + gene complement(3643213..3644415) + /locus_tag="Ccel_3108" + CDS complement(3643213..3644415) + /locus_tag="Ccel_3108" + /inference="protein motif:PFAM:PF00999" + /note="PFAM: sodium/hydrogen exchanger; + KEGG: bce:BC4739 Na+/H+ antiporter NapA" + /codon_start=1 + /transl_table=11 + /product="sodium/hydrogen exchanger" + /protein_id="ACL77400.1" + /db_xref="InterPro:IPR006153" + /translation="MMGNLIFEIGLAVALIAIVGLISKKLRFSVIPFYILIGMAVGPH + APHFGIFDLRFIESSTFIEFMGRLGMLFLLFSLGMEFSVSRFVKSGKSILTGGLCYIA + INFFTGLMIGWIGGLPINETLVICGIMTSSSTAIVAKVLMDLKRTANRETEIIMGMIM + FDDLFIAIHISILSGLLLSGSKSVWGIIFTAATALFFILFMLFVGKRLIKYLDKLLNI + QSTELFLLIVMALLFLFAGFSESLHVAESIGALLVGLVFAESVHAKRIEQNILPFKDF + FGAVFFFSFGLTIDPMSLGGAVWLAVVAALLTVVGNIVSGLIAGHIAGITGSARANIG + LTLASRGEFSIIMANIGKAGGLMPVIQSFAVLYVLILAIAGPVMSKQSVQIYNGYQKI + FGRKKREK" + gene complement(3644415..3644903) + /locus_tag="Ccel_3109" + CDS complement(3644415..3644903) + /locus_tag="Ccel_3109" + /inference="protein motif:PFAM:PF02080" + /note="PFAM: TrkA-C domain protein; + KEGG: mta:Moth_2066 TrkA-C" + /codon_start=1 + /transl_table=11 + /product="TrkA-C domain protein" + /protein_id="ACL77401.1" + /db_xref="InterPro:IPR006037" + /translation="MIVREIDLPGIGRKFEIEIGGGDKIVVIVHDDGRRELYHFCNGE + DDSVSVISLEDTEARLLASIIGGMAYSPKSMDNVEVVIGGLVIEWYRVEEGSACIGKT + IEEMNIRQATGVTILAVVEKNREKNINPRPDYQFKPNSTLIVTGERKNLNTFKNYIRD + GR" + gene 3645990..3646127 + /locus_tag="Ccel_3110" + /pseudo + gene complement(3646232..3647767) + /locus_tag="Ccel_3111" + CDS complement(3646232..3647767) + /locus_tag="Ccel_3111" + /inference="protein motif:PFAM:PF00239" + /note="PFAM: Resolvase domain; Recombinase; + KEGG: amt:Amet_4005 resolvase domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Resolvase domain protein" + /protein_id="ACL77402.1" + /db_xref="InterPro:IPR006119" + /db_xref="InterPro:IPR011109" + /translation="MTEIRTSYKRIRVAAYCRVSTEKDEQLLSLKAQKEFFEEYADKM + GFELVALYADEGISGTKLKNRKQFNKMMQDAERGLFERVYVKDVSRLARNVVDFLQSI + RKLKSLNIDCQFITANMSANDGELTLTILAAVAQEESSNLSKRVKFGKKKNAEMGKVP + NLVFGYDKTVGDYFNLKINVREAEIVKRIFDMYINKGFGTNKISQILNKECIKTKRNC + NWSQNAICRILSNELYTGKVINCKERVEDFLTGKRVKVEESGQSIVDKPEIAIISRSE + FEQAQSLLGQRVDTFKIKKERHSNKYALSTLIKCGCCDRSFRRIYRKRENSEYIKWGC + STRNSDGATQCSNTTLVDEVELLDEIKEYLNTVVSSKEKLLEKTINEFKKKYKLGHGE + TNESDLTSELERLKKLKLKQTKMYEADIISIEELKERTADINEAIRKAEAELSILQGN + TSTFDRLEAIVKKYCGSINDVLNTDTIDNSMLKKVIDKIVVNTDGGIKVYLKLFKDLE + LVN" + gene complement(3647793..3647930) + /locus_tag="Ccel_3112" + CDS complement(3647793..3647930) + /locus_tag="Ccel_3112" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77403.1" + /translation="MIKRIEFVDPNLPSDIEKILPSILAQALINKLQNENITDNKNKS + A" + gene complement(3648542..3648673) + /locus_tag="Ccel_3113" + CDS complement(3648542..3648673) + /locus_tag="Ccel_3113" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77404.1" + /translation="MKPMKIIIEFTDKRIVIRPAKRKIPSVATTEYRIVLTKTIKFR" + gene complement(3648648..3648863) + /locus_tag="Ccel_3114" + CDS complement(3648648..3648863) + /locus_tag="Ccel_3114" + /inference="similar to AA sequence:KEGG:BC3703" + /note="KEGG: bce:BC3703 phage protein" + /codon_start=1 + /transl_table=11 + /product="phage protein" + /protein_id="ACL77405.1" + /translation="MFYNLLAEMARHRPRITKLNIAECLEISEKTARNYLNGTSKIPW + SDALKIKNTYFSELEMEYLFETDENNN" + gene 3649027..3649350 + /locus_tag="Ccel_3115" + CDS 3649027..3649350 + /locus_tag="Ccel_3115" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ctc:CTC01070 DNA-binding protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77406.1" + /db_xref="InterPro:IPR001387" + /translation="MGLEVINELRKLKGLTSEQLSNQSGVPIGTLNKILSGVTKDPKL + ETLKALAKVLDCSLNDFDDSNNNNTCNSKTYSEAFKIFQMLNSDFQRYALNQIKSLLD + LQNKL" + gene 3649730..3650437 + /locus_tag="Ccel_3116" + CDS 3649730..3650437 + /locus_tag="Ccel_3116" + /inference="protein motif:PFAM:PF04397" + /note="PFAM: response regulator receiver; LytTr + DNA-binding region; + KEGG: cbe:Cbei_4580 two component transcriptional + regulator, LytTR family" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, LytTR + family" + /protein_id="ACL77407.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR007492" + /translation="MINIAVLDDELKFIYDYENKIPEILKKNSIEGSLIIATNSTSKF + IDTVKSNKVNVCILDIDLKSDITGMNIANQLRQEDYPCEIIFMTGHYEYIKEAFNVQA + FNFIQKPGWDELERNILKLSNEDLKRISKKTVGIKCGFDVIFINFDTILCIEHVGTKT + TIHTTTGRYDTYEGLEDLINRINDKRFIRCHRSVFININYLQKIDIKNREIMLTDGSQ + YKIGPKYYPVFQTWRDL" + gene 3650437..3651729 + /locus_tag="Ccel_3117" + CDS 3650437..3651729 + /locus_tag="Ccel_3117" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_1311 signal transduction histidine + kinase regulating citrate/malate metabolism" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL77408.1" + /translation="MLIIGQLLINTVFAMITAYLTYIFIKNNFNIQIQLKSLVVFVIF + NGMLSGIVSTLWMSVLPIPGNLQFLKTIILIIINIIMLRYFLHIEWAKAVLAFCLMTL + FIGISNFTVPLVFYICGINATPDIINNNIPLFVLMNIVIYAVTLLLIKLSPYAKIIGN + IKNLTPIGFLLVITILIMASFLGVHFVVHFDPVSFILVLLSSIAYFFFSVWYISIYHK + YEMQREERNQQEFYNESLANTLHDLRRIKHDQMNHISVLYSMQKMKRFDETTSYLKEM + LDTSSSVGNTAIYNIKNAGLFGLISAKINFAKSNGVKINLKIIGIVDSIPYIKISELC + EVIGIYLDNALEEVLINGKLKFDMQIISTDSNLTIRVDNQCDKFPNIKKSSKGKDRGD + GLNIANKIISSYKNILSSTFFDESSMIFSQVLTIAKEA" + gene complement(3652990..3653337) + /locus_tag="Ccel_3118" + CDS complement(3652990..3653337) + /locus_tag="Ccel_3118" + /inference="protein motif:TFAM:TIGR01573" + /note="TIGRFAM: CRISPR-associated protein Cas2; + PFAM: protein of unknown function DUF196; + KEGG: rsd:TGRD_224 CRISPR-associated protein Cas2" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas2" + /protein_id="ACL77409.1" + /db_xref="InterPro:IPR003799" + /translation="MSDILGRNRFMRILVFFDLPVKKKMDRDNYTKFRRNLIKDGFCM + IQYSVYCRVCSCPEMAEKHVNKVKTFLPAKGSVRVLTVTDRQYSSMIILLGKKTSNEW + IDKKMIEGQGMLI" + gene complement(3653330..3654226) + /locus_tag="Ccel_3119" + CDS complement(3653330..3654226) + /locus_tag="Ccel_3119" + /inference="protein motif:TFAM:TIGR00287" + /note="TIGRFAM: CRISPR-associated protein Cas1; + PFAM: protein of unknown function DUF48; + KEGG: asu:Asuc_0377 CRISPR-associated Cas1 family protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein Cas1" + /protein_id="ACL77410.1" + /db_xref="InterPro:IPR002729" + /translation="MGWRNIIVSNPTKLKLKQNNLWVEQSDGFSIPIDDINTIVLDSA + DVTITSALLSKLAEEDIALYSCDGKHTPNGVLLPFSCHSRQYKIVKTQINLSAPFKKR + CWQRVVQQKIENQAFCLNILELKGRDELINLSKSVLSGDSTNVEAHAAKYYFSVLFTN + FKRGMQDNTNYALNYGYSILRGAVARTIASYGFIPSIGIHHRSELNNFNLADDFIEPF + RPIVDMWVKQNINEDTLLTPKHKLNLISLLGYECVFEGKIISIRSAIEKVISSFSSSC + AKNDYSLLKLPEIIPLEVHANE" + gene complement(3654189..3657254) + /locus_tag="Ccel_3120" + CDS complement(3654189..3657254) + /locus_tag="Ccel_3120" + /inference="protein motif:TFAM:TIGR01865" + /note="TIGRFAM: CRISPR-associated protein, Csn1 family; + KEGG: nmn:NMCC_0397 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="CRISPR-associated protein, Csn1 family" + /protein_id="ACL77411.1" + /db_xref="InterPro:IPR010145" + /translation="MKYTLGLDVGIASVGWAVIDKDNNKIIDLGVRCFDKAEESKTGE + SLATARRIARGMRRRISRRSQRLRLVKKLFVQYEIIKDSSEFNRIFDTSRDGWKDPWE + LRYNALSRILKPYELVQVLTHITKRRGFKSNRKEDLSTTKEGVVITSIKNNSEMLRTK + NYRTIGEMIFMETPENSNKRNKVDEYIHTIAREDLLNEIKYIFSIQRKLGSPFVTEKL + EHDFLNIWEFQRPFASGDSILSKVGKCTLLKEELRAPTSCYTSEYFGLLQSINNLVLV + EDNNTLTLNNDQRAKIIEYAHFKNEIKYSEIRKLLDIEPEILFKAHNLTHKNPSGNNE + SKKFYEMKSYHKLKSTLPTDIWGKLHSNKESLDNLFYCLTVYKNDNEIKDYLQANNLD + YLIEYIAKLPTFNKFKHLSLVAMKRIIPFMEKGYKYSDACNMAELDFTGSSKLEKCNK + LTVEPIIENVTNPVVIRALTQARKVINAIIQKYGLPYMVNIELAREAGMTRQDRDNLK + KEHENNRKAREKISDLIRQNGRVASGLDILKWRLWEDQGGRCAYSGKPIPVCDLLNDS + LTQIDHIYPYSRSMDDSYMNKVLVLTDENQNKRSYTPYEVWGSTEKWEDFEARIYSMH + LPQSKEKRLLNRNFITKDLDSFISRNLNDTRYISRFLKNYIESYLQFSNDSPKSCVVC + VNGQCTAQLRSRWGLNKNREESDLHHALDAAVIACADRKIIKEITNYYNERENHNYKV + KYPLPWHSFRQDLMETLAGVFISRAPRRKITGPAHDETIRSPKHFNKGLTSVKIPLTT + VTLEKLETMVKNTKGGISDKAVYNVLKNRLIEHNNKPLKAFAEKIYKPLKNGTNGAII + RSIRVETPSYTGVFRNEGKGISDNSLMVRVDVFKKKDKYYLVPIYVAHMIKKELPSKA + IVPLKPESQWELIDSTHEFLFSLYQNDYLVIKTKKGITEGYYRSCHRGTGSLSLMPHF + ANNKNVKIDIGVRTAISIEKYNVDILGNKSIVKGEPRRGMEKYNSFKSN" + gene 3658372..3658629 + /locus_tag="Ccel_3121" + CDS 3658372..3658629 + /locus_tag="Ccel_3121" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: stc:str1466 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77412.1" + /translation="MQKIVNKLKVLAIIIYLFPILFVSIFTQSIDYFLLSTGIMTILL + GLCMNFAPHYLGYNKSADKYHSSTFIGISGILLLLLYTMGL" + gene complement(3658714..3659283) + /locus_tag="Ccel_3122" + CDS complement(3658714..3659283) + /locus_tag="Ccel_3122" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77413.1" + /translation="MLRFKKVTSLVLVLCILFAFSVQSFAASNEDSSVTTITQNKVAD + STQIDEEKVKDVLEQLVKDKSITMDYSEQVTAIVEKYADSSSSNSNAGTIHTNYYNQS + TGAVIVYSSMPSPLHGQLMFNKAGWNIIKEVLNLGGGSATVGFAIAAIAGITVTAPVA + AIIGGALVIENALVNLQFSLGSEFATITF" + gene complement(3659966..3660706) + /locus_tag="Ccel_3123" + CDS complement(3659966..3660706) + /locus_tag="Ccel_3123" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: hmo:HM1_0623 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77414.1" + /translation="MYMNEAFDSICFKGSIVSQSARFVYLCLCKHADNTNQTCFPSLN + RIAQIVGKSISTIKRAMRELCKYGAVERTPRFRKDGGQTSNLYKIMPCNFEEISKYEA + ENEVDQAQFEMSGSLQEDISFSESEYNEPARPCTTSVYKNEQDNREQKNDENNSFEEP + GANTIDNLGEVHIFNETTSSAKPQFEKIKITANRFKLSKYINCSKSRVLYWFKSLNQK + IHYQNLNIFKKMNRGEVMGDPPGTYPFN" + gene complement(3660783..3661916) + /locus_tag="Ccel_3124" + CDS complement(3660783..3661916) + /locus_tag="Ccel_3124" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_1875 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77415.1" + /translation="MMLYLCSHNNVNLFDWLNESSLVAQPFMLKKISSTQLDLSAFAK + KEAIGINYYKYLAIDLSAVVNDTETFKLAIQSIHIMNPKIKFLYIDIGNKTNVLQEVL + KTFGDIPVITENPEEDMSRFKTQVTAGLQYTQQILDTEKESRGNTVIASNTTTGKNEA + SKKCEAKKEYIFKNQKVMVAVINAYPRAGSTTLSINMAAYLNSIGATVSCVELNGELG + HLDKIINSTPGFTAVTENRFEREGVVYLKGEIPEEVNFVINDMSRVIQDESSEGALEF + AKNCNVAILCGTSKPYELQEIKKKIELLQKYGCYKINLCLAFTPEHEKAHLADLFGDK + HISVYFTEYTPDMFAEDVNSDVFQRIFQEYIKEKTNDNMVKLF" + gene complement(3661891..3662073) + /locus_tag="Ccel_3125" + CDS complement(3661891..3662073) + /locus_tag="Ccel_3125" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77416.1" + /translation="MKNSTNKVLELLFYAALSIIFIVLYFINKPYDKKPVHVDSPAKT + TIESQVSPYDALPMQP" + gene complement(3662085..3663017) + /locus_tag="Ccel_3126" + CDS complement(3662085..3663017) + /locus_tag="Ccel_3126" + /inference="protein motif:PFAM:PF01551" + /note="PFAM: Peptidase M23; + KEGG: oih:OB2491 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Peptidase M23" + /protein_id="ACL77417.1" + /db_xref="InterPro:IPR016047" + /translation="MAINPALIKAAVQIVSTEKGRKGLLIAIFVPIGILMLIICVIFY + ILTAPFQFLTDTYSLSADEQTAIQNAQTDYGFYLIPENKVLDRGGLFTYPTEGTTGTR + GFSPTPVHHPVLGISRPHWGQDFNTQWHSNVYAIADGQVYNMGISDEAGMFLVLYHDV + NGKQFFTRYLHLSAIHVHQNSRIRQGDAVASEGGEPGKDMYPGTSTGHHLHFEVRVGS + TYSSAVPVDPKLYIDPVPIEISCSSGKGSIKVNIAGGKDRGYEVSIDGGITWIGTFEK + TYTFSSLNSGSYSIVARDWSYQDNISKVSIVSLN" + gene complement(3663030..3664862) + /locus_tag="Ccel_3127" + CDS complement(3663030..3664862) + /locus_tag="Ccel_3127" + /inference="similar to AA sequence:KEGG:Clos_1879" + /note="KEGG: aoe:Clos_1879 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77418.1" + /translation="MSRKNTEEIPINGALLNSITPIGMEFKQNTINVGESMGRVYGIV + KYPQSADYGWLSKLTNIPSTVASITFTPVDDSVFLESLSNTIKQKRGECESAKDALTA + SRAKRAADDAEKMMIQVDQHGEKIGAMSLLVAPLTRDEKLLKKVCQKVESAIAVAKCK + GRVLSSLQKESFKQLSPFYASNEQIERITQRILPLSSFIGGFPFASSGLNDGQGYYLA + KDASGGLVVVDPWMRGGDRTNSCMTIMGVGGVGKSTAIKHIIMAEYMRGTKIIIIDPE + SEYKELTRNLQGDWLNCGGGIKGRLNPLQIRQVPKDDEDEDGERLYEDEGNGMGALAL + HMKSLEIFFKLYKPSFNDKHMALIKICLIEMYEKFGITWDTDVTNLKNEDYPIFTDLN + EIIEEKKSKETEPNIKALYVDISLLLHDLIFGSDQFLWNGHTSIDTKTRCVCLDTHDL + QDTSDNIKSTQYFTILQWAWEQMTRDREERVLLISDEAYLMIDHRVPQSLIFLRNAVK + RARKYEAAIAIISHSVVDFLDPSVKMYGQALLDIPCIKILMGTDGKNLQETKELYKLT + EAEEELLAAKRRKIALLIIGSKRLQIEFDLPEYKMKYFGKAGGK" + gene complement(3664865..3665608) + /locus_tag="Ccel_3128" + CDS complement(3664865..3665608) + /locus_tag="Ccel_3128" + /inference="similar to AA sequence:KEGG:Clos_1880" + /note="KEGG: aoe:Clos_1880 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77419.1" + /translation="MDLITIIFPILAVIGGVIALYVINKGNVKTKNNSPVRINKGTKA + SRNKTTEEITAQEFVNVRDITDKYLYTRDGFVFSYIRIYPISPDLLSRREKRTLTRQL + TAELSAETERFGFLALSRPVDISPLVKEYSELLSDTNDPVQKEILKSEMQAMSNYALS + GEVVERQFYIKIWDKYSEGVENELQKRCFTLLGYFTSSNINGEILIEEDIIRLSNLIT + NPAYVHIENTDVRASMPIIESLVAAAKEE" + gene complement(3665612..3665713) + /locus_tag="Ccel_3129" + CDS complement(3665612..3665713) + /locus_tag="Ccel_3129" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77420.1" + /translation="MKLKKVLKNKILRNKVAEFIILSPYFIPKREVV" + gene complement(3665762..3666004) + /locus_tag="Ccel_3130" + CDS complement(3665762..3666004) + /locus_tag="Ccel_3130" + /inference="protein motif:TFAM:TIGR01439" + /note="TIGRFAM: transcriptional regulator, AbrB family; + PFAM: SpoVT/AbrB domain protein; + KEGG: cbe:Cbei_3375 transcriptional regulator, AbrB + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AbrB family" + /protein_id="ACL77421.1" + /db_xref="InterPro:IPR006339" + /db_xref="InterPro:IPR007159" + /translation="MKSTGIVRRVDELGRVVIPKETRQVLSISERDSLEIFTDEDMIL + LKKYSPGCIFCNNVKNLTVYKNKHICEECSHDLKSK" + gene complement(3666033..3671306) + /locus_tag="Ccel_3131" + CDS complement(3666033..3671306) + /locus_tag="Ccel_3131" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_2638 PKD domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77422.1" + /db_xref="InterPro:IPR000601" + /translation="MNNRLVKVLCMIMCTAFFIAFFPVLYKINAAGSYTSLKYEKGGM + EFFDRTAYDSYKKNNQLPTLPGGGTVPFSIKKGTNTYYLNYRLFTQKNLVVYGSYRSV + AGNYFKCGYQLHNDLDKKMPDIYYGGGYFLKPEGISCKGKEQNPETHGDKCKTNRGEW + KYLGFDVNGEVFSNMWMINVATVTTFRERNWIKEPWSKNNEVNKVLTLSTSTYNNAAY + NDSQHYSHQTVQKLKDWMYKTFTSVNRFSGIPDGKGHYDPNVYQYMYVQSAPTIQYSG + SGKMWHVRPNGSIWYQTFSIPILKNNKYDLPVKCYVTLASPLPSIPKGGELDKQKVKL + QFKVQGVLEDDDYYKDPVTRSAFYTRQDIKNWDLNIDKIPGLLLTDEQKKAVTVVPKS + AADNQGTATITVETTVADIKKLPKSGDKYQLAVEATAKVVYKDAHTQKAEGNNKFLTN + NFKALAKKESLVIDIPTLQINNHIGEIAFDSVPFRDATDNTDMSAVKSTELYINGEQV + DYNEFFSGSYIFPATSDKNGYFAEVICRYNLDKSKIVLTGIPEDKKKEILGAAVVEYV + STDYVYVYPTKPIAQFKLSSNSWKQNRIINVENISEDGNIQLVLDKYPIVEYRWSYGG + DTSQMYKGTDSDIRKQLQYKEPGSYLVTLECKNTLGKWSDPYTVEFKVLEDIAPNIEL + NLSDSVVTRNDQISAWHYDVNSTDGDKVAAAKIELWYDSDNNGIVDTLIQKWNGLGDF + PKYSPTQLGYYKFYIYAKDEFVGVNGQDTLSQYVTDSDKKSANLECDFWVDNYQPLSD + IYIDAPIERPNVDLYIMRDKDLAQDKYEYIASNRVSMENALLGRNIIPNVNIWDMKIY + EYSTPASISSNTGTSYPTEEIPYTSAGYSGKLQRTSVADNGGYHDFGHYETRIETKTI + SSGGGYSSGHGYGGSTPPSSISYSDGEGYTGSMSIKNYVYTSTPCGHPISPTHGEGYF + NWTRSWSGYSGTASRTVSYWVPNMQWVANYTGYYSGTIFKYVRQPYTDMWRGNSSKYI + LYVSDSKISELLAFNEAVAKTDAKVILAGTPDIHKQYSDCAKFIDATDKTAQEILNEA + LEYISEETPEVEQVFILQNQQFTLNVGEDDLEKDEIISREMQYVQEKDYFDNPTGQEP + GTLTVFNSGKGWTSDIKNSFSNVGKYRIYRRVKDKPSGAYGENYSYYSGATEVDMYVH + RKPIADAVLDWKYDPQSGACKTIWIDKSYDLDHNITRANTDKGIVERKIMFRKDSGEW + QYFIPDTLTYGTYDVMYYVKDMEGAWSDPWTYHFTLDDKPQFTASARAYDSAFTLKSI + PASEYIEGYNLWTRQLNPVQLEMNLTPTVSALPSTKTVNFQEGVTGTQSGQDINWKNQ + TLQIPDIYPDGLRNFTITARDKLTGAETPKTFSVNVFTPINLEPALGGKTLNTNVQTK + IYATTTKYPTVTRVNMQYGTPYQSYTLSMTPTPDSNLKSWVVNYMVPDNVPDGTYTAQ + FTSINPSGKAETKYISYKVSRNRPPEVNIQRISPQFVYEGDSVSMTFEVTDPDPEQVL + TSKVTVKRGSEVVYSGENISYVSNGKKKTFTMKTPRLTETGTYTISVITIDQYFAQDT + DITTFTVHGLTIKGYVNHTPTWKTNWDKYNKHLANKGKPTYGNDAFFNDEKYVLSAVT + TEINSGSAVTASNVRVRILERSYGPVSLASQTANTFKGEMWNEDMKKNRWKGTYVTFV + FTVTYSNGTIKTDTVKTYVVNDDYWRIRMAF" + gene complement(3671326..3672762) + /locus_tag="Ccel_3132" + CDS complement(3671326..3672762) + /locus_tag="Ccel_3132" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: amt:Amet_3262 NLP/P60 protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL77423.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR005829" + /translation="MKNNLRKAISVILVISFILLGVYPVLADNTAGTTTAMRMQPLID + KYNGLTQASLDTELAKYTDIKSHWGRNYIAKISALEIISGFPDGSFRPNDKLLGGQYI + LMLIRAIGYRPEVPQGVPYYKPFVDIALNEGILAKGENLDYTKPISRELAASLARRTI + GKYETVPKDYFVKGSDPYPSKGNKGFFDNVYVGYQKLKMTDYPTVTGKYLQDVIDCYR + IGLLTGSNNKFNPKGTLTRAEASVIIIKLLDKKARVESVPSSSESFKWTNSNANNGEY + DNEDAGFYENKEYTLYKGLFPMMEIWETAQTMYNNRNLITGGKIDFTFSEKYKSFAVN + YFNGEDHFKKYMNYNFNGLILPQNYVGIAVEKLQNKKGQDRSLYDNCNGWLYDITSYE + VDKYNNDLKKYSYELLKLWFGKDYEQAKKIHAQYLGYALNDIEGKIGIYLLNGRQIYV + VGGNGDSGNVFSFRVWAKGFITKDTMLK" + gene complement(3673267..3673758) + /locus_tag="Ccel_3133" + CDS complement(3673267..3673758) + /locus_tag="Ccel_3133" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77424.1" + /translation="MKAFLFGIGAFFFGLIVWLFCHDYNLNHMHYNQLKTVAEEASVA + ATLFTESKAESEGNIVFNQTEGHKAIKAVLKSMLKTDENLNPVEGSYWQEKITYKAYF + FDDSNTTYPKSFTDPETGFKFEVLRPSVVVTINAGKARYTMAGIIDDTVNIRSAAHEI + VGW" + gene complement(3673755..3674171) + /locus_tag="Ccel_3134" + CDS complement(3673755..3674171) + /locus_tag="Ccel_3134" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77425.1" + /translation="MKNFLAGLAIVVLLIVFPLQSVLEISNERRIQRFSDIVYVAAQT + ARLDGYFKQTTIDKLKSDLMKEFPDLSDGDIYVNVTTTMKYRTNEFDEREAINYDIRI + PIRKIVAVPAYWGISENENRTTAKRAGFVLSEVLAP" + gene complement(3674248..3674403) + /locus_tag="Ccel_3135" + CDS complement(3674248..3674403) + /locus_tag="Ccel_3135" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77426.1" + /translation="MKEFLATMAGVILGAFLFTMILGPGDTKSLKSETGNVMKYTVKQ + MHEELVP" + gene complement(3674418..3674585) + /locus_tag="Ccel_3136" + CDS complement(3674418..3674585) + /locus_tag="Ccel_3136" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77427.1" + /translation="MKDFLTLLAGVLIGALFFVLIWGTGGNDNSSLAGKSKNIFDNVT + TEMTSKVKVSP" + gene complement(3674733..3675617) + /locus_tag="Ccel_3137" + CDS complement(3674733..3675617) + /locus_tag="Ccel_3137" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77428.1" + /translation="MLILPYIVILAVFFLGAAIYKKSFSFESAGFRFSRDVTRRSLDR + IIKWYKKEFESAETDRVLKQAGIKLSAFSYQLIRYSLLIIWLAYITYIRLHKGIGVNI + HVLLWIITLVISRPSLKLLNFRSPFSMLCDLMNKRKREKCDVEIFRVLSQLKNMVISM + SQKALSSEYLIGEITKYTKVTRPYFMRMLAYWYEGRYKEGQEYFQSSIGTEAAKSIAG + LIGKLDYIQPEQFISQIELYQNQVEDKRKTAVKKVREHQGNVVFVIAMLSGIAILINF + LAVAVGIDTIPMLQKISF" + gene complement(3675634..3676605) + /locus_tag="Ccel_3138" + CDS complement(3675634..3676605) + /locus_tag="Ccel_3138" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77429.1" + /translation="MNLNIIGILLQHIVPWGCVGLLAAGLWFIFGASIVNMFKEVQRL + KQLEKTVSATKKKSQGIIFNHIYKVLTASLSKEISDLGTYSFMIGSISLFIFSFLTAL + KLFNFIISLGIAIIIAASPYVLLRLKLRSVQIEGSYDANVLVPSITNEYKQHYFNMIN + AIENCAVREDIGSYSRKNLFRLSLALKAYYSEEDLDKAIERFVFAYNTEWAMLLGLNI + KMAIHKGIVVSSGLEDILKKLKDSSEQVEVSKRYNTDAFAIKFLLIPLYIGGILFSIS + TFDFTLRKYFEYQFLNPIGLRTGIISFMGIIVSFISLRMIRKPKYDI" + gene complement(3676602..3678089) + /locus_tag="Ccel_3139" + CDS complement(3676602..3678089) + /locus_tag="Ccel_3139" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: drm:Dred_0825 type II secretion system + protein E" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77430.1" + /translation="MSNVIQNPDYTKMKEFDLEEVLSRSRNRRKKNLGYGALDNDSRF + LLLCSRIKKHIDDEWIREQNQNNQKLLLERHRNAILGKPTEVNYLKDKIREYLKAKRL + ENERYPTWYKNLIDAIFHENWGIAGIAEWMDMPESSSAKIIGDRIYFFINGKQVLKEQ + RISKKRFEQLRQAFMLSDETKRANENYSELYMYSGERVTVYTGRKVIDGQSVMVFRKY + VVKVLTFEEQARRGTIPVELVPALEALVNCGVKVAFIGPVRSGKSTMLLTWQLYEDPE + LEGVLIQTDPEIRIHEVMPKAPIMPLIAGGKELFELSSEILKSDADYLVVQEVRDGYT + AYIAVEAANKGTNRLKITAHLSNPEDFCYDIANKIQGVFGGNIDYQMVRVANSFNFLF + EMVQLPGNRSQKRLKSIYEIRYDTEANVISYHKICEYNKDTDSWCFSYSVGNKVTELG + EFENPKALEVYKNTLKFLSEKYPMPEKVVKPTYSKVDSKEGEREK" + gene complement(3678093..3679259) + /locus_tag="Ccel_3140" + CDS complement(3678093..3679259) + /locus_tag="Ccel_3140" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: maq:Maqu_2336 septum site-determining protein + MinD" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77431.1" + /translation="MNTVTLITNDIDLYNVFSNSKLFSEVNIASSLDEKIEYDYLVIS + DRICNINELIQSVEKGIRAKKITYLLSSAKGSQSGYSSLTALLKSHGISILPPKLTES + QLLLRFCEIINLQERKTNNVVVLFGADSKVGTTLTALSIAENMAEQSEGNIAFLNMSG + HLSYTYVENYEGKGMDSIRSKVFNKILSKDELREAMVRSRELKNLYMLPPCKTLIDFK + YYKTDHIEYVIDMASKIFDAVIVDAGWYPHNELYFGAINSTPNRYMVTTPQQSSLYSH + RIIKQQALDEYGITERKNNAEKRDTPNNILLIVNKQSDGISSNVTKEYDMVFAVSLPY + IPNASYLTDIQNKSLRGLSRHYDRQLDKLTNVMALQIEYKLQQKQKVKNIFSRG" + gene complement(3679274..3679954) + /locus_tag="Ccel_3141" + CDS complement(3679274..3679954) + /locus_tag="Ccel_3141" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77432.1" + /translation="MRQKLKGVIGIAIMFTALIATYLWVTYGQTEIQSVSLLVAQKDI + PKGTVINNAQDYFKSQKISLESAVAGAIKPNQINLLDGRIAEQFIPANGQIVRQTFSN + NSLILKENEFVFKLPPTWVYSIPSSIRRGDKISIYEIDSKIDNKLNTNEDIAAMLTKG + KQESIFDTTVVYVKDSTNREVIDTNGDERLDGTSQVSAIEIICTRHDTQVLENSVLSG + KKLIVVYR" + gene complement(3679957..3681144) + /locus_tag="Ccel_3142" + CDS complement(3679957..3681144) + /locus_tag="Ccel_3142" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_2637 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77433.1" + /translation="MKTAGLFENNEVMAGINKFLNKFDISITYNMEELLNNVSNISSC + QDLEAILIHSSARPKEQHKKLLYNIRAILPNILLIWFCHENEKDEQFEAWAFSAVGLK + HIIYINENGEIPVNRLVETLTAEHERLVQLEEAKKQKQAVNTKLLRVKPPPKEKIVEK + VVEKKIIVEKEVIVDRPTVVKGLLKIATFSVSPGCGSTSMAVRLGKYLSQHGKTAVIE + VDGSDSLQFAKPTANCDYRALKKPEELGDALYELYRSGFNITVTDYGCLFKINSDGSL + DRNQEDSINRVLLKEFIKADVKLGMAFTAPWQLEKLKFFTPGNEVFEGLCGKAYEELC + FLTDGEEDKAEKDLNGIKCFSRDTDTDILIQTLLPDIAVPKEKKQQRQYGIFRLLPRI + RGV" + gene complement(3681141..3681485) + /locus_tag="Ccel_3143" + CDS complement(3681141..3681485) + /locus_tag="Ccel_3143" + /inference="similar to AA sequence:KEGG:Clos_1909" + /note="KEGG: aoe:Clos_1909 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77434.1" + /translation="MSSEDGNRDTLYIPAGLKTQKEIYTGFGKNELRQAIIGTLIIGG + LDALFTLLVFNNMPLFVILLLLGIFVSVMCVQKDVTNLSVLDMVKNLYNYIRSQKKFY + YKSLDEWRWDNK" + gene complement(3681482..3681715) + /locus_tag="Ccel_3144" + CDS complement(3681482..3681715) + /locus_tag="Ccel_3144" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77435.1" + /translation="MDSVNLVKLISIWLAPVCAIGGAARATYCLIASNYNEDDSAMLK + KRAKNAIKFVIMASLTEAVKQLAEAYFNGGRSI" + gene complement(3681728..3682618) + /locus_tag="Ccel_3145" + CDS complement(3681728..3682618) + /locus_tag="Ccel_3145" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_1910 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77436.1" + /translation="MDKILEFLFKPVVSHGAIWIGSMFSGLEEISLRIENSIPVILEK + DSLSESVAYGTITDAANVLSTAMSKIQVLCLTMAVAMIILKFLKKGFEAYVLWTEGDA + DTDPLLLATSFFKALAIAMAFPVLYGYLCDITSSFSTAIRNACGVTSEFSYGNVGTLM + LSGIFDLIGFLVAIIMLIILYVQFIKLGVEMFVLRMAFPIGCVGLLDSDRAMYKAMTQ + VMFQCCATVVVQVGLSQLALSVVFTGHPIIGTAIILAALSTPKFLQSFMVPSGGGFNA + GSVYQTARVFQMAKGVVTRG" + gene complement(3682652..3683047) + /locus_tag="Ccel_3146" + CDS complement(3682652..3683047) + /locus_tag="Ccel_3146" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: aoe:Clos_1911 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77437.1" + /translation="MNRLIKKIQCKPNRIINRLRRIYLILAITVFTLFNTIPVSAGGF + GDSIFAKGTKDLFTDIGKYLIILAPIAGAAVGAYFFIRRGAADEMDQKKWNDRIKTTV + ISTLGAVLIGAIIVLIASYYGKSITTGIE" + gene complement(3683053..3683994) + /locus_tag="Ccel_3147" + CDS complement(3683053..3683994) + /locus_tag="Ccel_3147" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: csc:Csac_2619 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77438.1" + /translation="MDEILCINCKKPMKGDDKKWFCDCGMTVWKVTSGKLLSPVHLRQ + LMEQGRTEMLTFRSKKNKPFKAMLAINGTRTEFVFENAGKDQDADDEANRYMALDRKE + VRVRVESGQPGIVDLTIESLDMPRYFQKINFGLGSTREAECMGIIVAADYAKFYIPDF + SEKTMRIQVNSEEFSNYILRETKPRDKEMQYFISYAWEKLGGFRAFEAVYTPKRRRKN + EGGNVSRKFPSGIFPWLEKNVENQELDESIRVFLPRNPAVYRQFKASFHVAQLLEVDD + DEYVIYEVPLELKKALDTWYSMVSSISTNTNSLKREE" + gene complement(3684267..3684479) + /locus_tag="Ccel_3148" + CDS complement(3684267..3684479) + /locus_tag="Ccel_3148" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77439.1" + /translation="MKIIEDMEKWEILKAAMKEKGYMPYIWQYDVQSEEGLHIWFYKK + NSDILKRVEVITHNKAIADDIEEYGW" + gene complement(3684558..3685019) + /locus_tag="Ccel_3149" + CDS complement(3684558..3685019) + /locus_tag="Ccel_3149" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77440.1" + /translation="MNNAAYCPACGTTEFKNENGKPSCTKCGRIVTEEEIAADIKKRF + EELNTKEKMYALNEDSVAEYIAATSKIEALDYCEDLWGKDVVEQYFNEFKEENPSGTY + EDFIEDFVREMPEDEEFSLWNDDIGKVIVKTIGEFLKDITEFPSHFACSEY" + gene complement(3685055..3686011) + /locus_tag="Ccel_3150" + CDS complement(3685055..3686011) + /locus_tag="Ccel_3150" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: efa:EF2316 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77441.1" + /translation="MLVAFQNLEPQYKNYAQEKIKMYHMSQGNECVDYVPIMAHLYDL + IVCSSIFTFTDKSQADPRAICGGTGFDIKSKLPECIDKLRPKVNYGFCSRGCIRNCQF + CCVREKEGYVHVEADIYDIWDGQAKEITLYDNNILALPDHFKYICEQLHNERIRVDFN + QGLDIRLVDNDVAELLSTKYISHAQYHFAFDYSSLDGIIEDKIKILKSKGINRSTFYV + LVGCKDRDNKTAKEDIEDALYRLNLLKGLGQNACVMRYRRIHDKQPKSLITKDTEKLY + IPLANWGNVHAAYQKMDFLTQYLNHERGKPYKSYYQSMGLIA" + gene complement(3686059..3686343) + /locus_tag="Ccel_3151" + CDS complement(3686059..3686343) + /locus_tag="Ccel_3151" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77442.1" + /translation="MFLITEIYIICYIFYNGVVTIRLRKKGVISKWYILFYILGVILF + GINVFMAKSILNKVLNGCTCLAILITPIIYISKSKIAARNRLACSEIKKG" + gene complement(3686398..3687477) + /locus_tag="Ccel_3152" + CDS complement(3686398..3687477) + /locus_tag="Ccel_3152" + /inference="protein motif:PFAM:PF01555" + /note="PFAM: DNA methylase N-4/N-6 domain protein; + KEGG: psb:Psyr_2825 DNA methylase N-4/N-6" + /codon_start=1 + /transl_table=11 + /product="DNA methylase N-4/N-6 domain protein" + /protein_id="ACL77443.1" + /db_xref="InterPro:IPR001091" + /db_xref="InterPro:IPR002295" + /db_xref="InterPro:IPR002941" + /translation="MELNKIYNMDCLQGLKLLEQNTVDCCVTSPPYYGLRDYGLPETL + WPEVEYSPLPGLPEINITEWKGCLGLEPTIEMFIGHIVLIFREVYRTLKKSGTCWVNF + GDSYVGTGGDRKNPVQNELFNLQQSHTPGDGRYCRNKTLKKSGLKVKDMMGIPWRVAF + ALQADGWYLRMDIIWNKLNCMPESANDRPTKAHEYLFLLSKDKNYYFDNESIKEYCVN + GDPNPPRGSEGVLGNPNKGRRGPGNWKIKSVGLPGESANRGTPSVPVAGKKEFRNKRS + VWHVATDKLREAHFATFPPKLIEPCIIAGCPVGGTVLDIFMGSGTTAMVAEQNNRNYI + GFELNPEYIEIANRTRLSNVQLKII" + gene complement(3687633..3689921) + /locus_tag="Ccel_3153" + CDS complement(3687633..3689921) + /locus_tag="Ccel_3153" + /inference="protein motif:PFAM:PF02534" + /note="PFAM: TRAG family protein; + KEGG: aoe:Clos_1912 TraG family protein" + /codon_start=1 + /transl_table=11 + /product="TRAG family protein" + /protein_id="ACL77444.1" + /db_xref="InterPro:IPR003688" + /translation="MHNRHLKIQYATVFFVFIVLSVFCVFASMAFHKILLGADRAPTF + YPIKECIESIKTVKKHRLLFLCFEGLSFCLAASLMVSYSRNYISKLQCITPKIYTPVA + AGQNQFGSARWMTEKEKAKAFDTAVINHKDEFYKALIAAGKKDRAIAKKHVIDKEDKQ + EHKKLHFQYIKWLVDKVLPEEKRHILRGKHRLYYDEMLRKYFPSIWQIKEQRKIDKLA + DLFDCEFDVSKEADSTAEIKTDSIETIADTQCFSSGGLVIGMKKLRGGKELFYYIGDD + THLLGIGATRSGKSRTLVIQSICFLALAGESMIISDLKGELNQYTGTFLKRLGYNVII + LDFKNPLKSDRYNLLQPIIDAIDEDNIPKATECVWDLVGILVGDAKGEKIWNNGEAST + IACAIMSVVYDNREGERRKYQTLTNVYYFIAEMCKPIGKNIPIVEYVKELPDNHPAKP + LVAISEIAPERTRGSFYTAALTTLKLFTSSYINAMTMASDYNPKDLGRKKTALFMVLP + DERTTYYSIASLLVLQHYIQLVNESDGRGGRLKNRVNFILDEFGNFAAIPSFDTLLTV + GGGRGMRFNLFLQDFAQLESKYDEKVAKTIKGNCQVWDYLQTNSPETLKEISEKLGNY + TVSTYSLSSQSSKYQTPSSSASVNLTGRALLMTNEIAQIDRPYSLVTSKENPAIMYSP + DLSKWNFNTMLGLGNKKHNEKVRDYREKQRIERTTKKEAEKIELWSECWKYWQKQCEV + MQPQQQPNLLRRTISRREDDLY" + gene complement(3689946..3691160) + /locus_tag="Ccel_3154" + CDS complement(3689946..3691160) + /locus_tag="Ccel_3154" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tpd:Teth39_0051 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77445.1" + /translation="MSAVFYKQWFKPVNETRTPNKNAEHIRYIGTRPGVIKNEGEKHG + LFGNLYDSDTLEVKHKIKDVMDIVKKRSEERKNIFRAVISFSPENAAIKVGEPITKEA + WQELIKQQIRIIAEGNNIKMSDFKWVAAAHDTPSHPHVHIVFWDERQEIQKNWVNPKV + PDKIRGKLVKNIFEDELKEYYEKRDQNKYLLREITNEMTGEFETYLDKMSKREYSTLT + NEEFFFDKPNSQFCKYLAQRLFEIRKEIPKGSLKFEYLKPDVKDKLISLVRELVDIDE + NLQEAISEYVESKLDIARIYSSNEMELDAKADEYEKEAEKIIANKLLGLVRKFIKKEW + NIKNEEFEAGIRERATEQLVTEIFSALARLTKNNRKNRISSKHVMGGDLSKQARKEKA + KEMESTGWDIEK" + gene complement(3691303..3692022) + /locus_tag="Ccel_3155" + CDS complement(3691303..3692022) + /locus_tag="Ccel_3155" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77446.1" + /translation="MNKTISFCVKNQEGLVSLIRILKIQPDGACYIDYGKKNNNYHLS + LHPPNEQYSNGQMHIKENGKIILKRIIPDFHDFNKHRCFESVMILESELRKSSAKISN + SVVLLELPKNHMVHIVFVRSDKTWGSIKSAFISDKPNKQINENITPYPVFYSIEDMPN + ANYYLTYNTQPIDTAVLDYVASVKEHYVRSQYMKKSDNHILHVRHPFLSTDIEISITS + EDIAKYRENSKNDLISGFFSS" + gene complement(3692172..3692867) + /locus_tag="Ccel_3156" + CDS complement(3692172..3692867) + /locus_tag="Ccel_3156" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tde:TDE1803 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77447.1" + /translation="MELKYENRLVLFLDILGFKNLINISCKNTNVLNNIYQAVYEIQN + YENKSGKISSREVTTFSDSIVISYPIHNSMFMRVFQEIRDLVLILLKYGFVCRGGVGI + GELYHKDSVVFGPAMVKAYELESKYAKVPRVIISKADIDKYNFTGLEWDLKLDDDGFA + YFDIFKFYYSESGELMYISQFIKEKLEEVIRKYIDSPDEGIKFKYNWLLKKMIDGLEQ + KICFVPVQKNGKE" + gene complement(3693019..3693630) + /locus_tag="Ccel_3157" + CDS complement(3693019..3693630) + /locus_tag="Ccel_3157" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tpd:Teth39_0047 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77448.1" + /translation="MKRIDKWSGYYLKKYRLLTKILDGNSDWSNNCTEEKNLEAREAL + EKFYNEYKKCRQDRKFCASTDMGYFSYLTYIDPVREALVDRLYQRACNETYSLLHYDY + FLQKRIMNSLLSVLEENLDIKCRIETEGTDCKNDKKETIDIKSLLSYISDDSDQGYYV + GNGNTNGKLVTIDPVDYKNRDRENLGNIFLGKLGEGKSFKINK" + gene complement(3693712..3694128) + /locus_tag="Ccel_3158" + CDS complement(3693712..3694128) + /locus_tag="Ccel_3158" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77449.1" + /translation="MKYSEFRYKWDQSILNGRFLFYYQLVFLGWYSIRGNIGLINDLG + ISYTFRVFGVLLIVAGLTRLVVACLRAESFQSLLNALIHLVKKIHCDVILTAVYLGYF + AYPAYYENTNIYVYLAPLLGTLCLIAVRRVRTKAHS" + gene complement(3694144..3694341) + /locus_tag="Ccel_3159" + CDS complement(3694144..3694341) + /locus_tag="Ccel_3159" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77450.1" + /translation="METENKKNSTGVGYVTTVKEYIKREKSNRCKVIVVDPEAEYTEL + MKERVISLKDKRINPFDIYQG" + gene complement(3694376..3694834) + /locus_tag="Ccel_3160" + CDS complement(3694376..3694834) + /locus_tag="Ccel_3160" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tpd:Teth39_0050 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77451.1" + /translation="MVKRKTNPEELKRSIRFKAKSIEDMKKLAAVRSVSVSDIVREFV + EKGLAVDGYKNDIDFITEIIHKELKEVLEPQINRIVKMLMKIGKVSAGTMYANLSLIQ + LISDEDQEAFYEMINRSLRLGVEYMKKKDVEIDQYLGQAEEVGKDSRRVK" + gene complement(3695297..3696319) + /locus_tag="Ccel_3161" + CDS complement(3695297..3696319) + /locus_tag="Ccel_3161" + /inference="protein motif:PFAM:PF01807" + /note="PFAM: zinc finger CHC2-family protein; + KEGG: aoe:Clos_1919 zinc finger CHC2-family protein" + /codon_start=1 + /transl_table=11 + /product="zinc finger CHC2-family protein" + /protein_id="ACL77452.1" + /db_xref="InterPro:IPR002694" + /translation="MKRFTNEQIYRANHVSIYELAKQLGYNPEKRGSNYHIKNHGGLY + IDDAKNSFYCWAAERGGGPIQFLMFTENKSWLDSMKYLIGDGEMQQTQEASLKQHKPI + EKKQVEFKLPDKASQYKRLFAYLIKTRGLDKDIVADLVYKKKIYESLPHHNIVFVGYD + ENGEARQAFQRGTVTGLSFKGVVPGSNMNYCFEMEGKGDSLTVYEAAIDAISHASIYK + SLGMGWKKEHRIALGCLSDNALTGYLKRHPEIKNITFALDNDDEAKFSNGSPAPNWGQ + EAANKYAEKYAKLGYNTTIEKPLAKDWNEDLLNIRLVQQDLKNRHEEDRLQLMMGNNE + ELEAAL" + gene complement(3696328..3698046) + /locus_tag="Ccel_3162" + CDS complement(3696328..3698046) + /locus_tag="Ccel_3162" + /inference="protein motif:SMART:SM00248" + /note="SMART: Ankyrin; + KEGG: LOC586468; similar to ankyrin 2,3/unc44" + /codon_start=1 + /transl_table=11 + /product="Ankyrin" + /protein_id="ACL77453.1" + /db_xref="InterPro:IPR002110" + /translation="MKKIDLYKPGGGKGKETIKTIKEISDELGSRLESQGLKPDFSFL + SADFKKFQKSEFPKDYNVSGMLSVSSDMVVASINVMDNKNPELKGRMFSGQYKIESGK + AAEAFSKATKAMQLMVESFWMDTEDKAINNEDEQLNTKNPQVEENDIKNDADPREVAL + SIQKALANEDVAREFKKLHQSASEDEETTAKTTKTVTIPTGNKALNDVEINDNYSQKE + LINGGNESGSIKNQLINVNFTPEQAEVVIDLLEENQKKYEPKSSMFGLLGEVMGKMLR + AISKKLDQVIDADKITSEKLNSLYSAINNENIDTFRELYRTFEQKIKYCHDFICEAAQ + GATIQSTDIINHILYKEKVPVSIRTLQNAFVTAIDNNINSALSIYKYTDANLHGSAQF + DTMRGFLSHALTTLPEADAEKFIKSSSKALDDTVIFKELIRAGKYGLLNSGLMQCRNI + DEHSPALFYFAAQHKDADAMHTLISRGADVNSNNGEALYACYETNKLEAAKVLLNYGA + NINYLTNYINQIKNVRPNIEFIQELYKHCGIAENELDNKLQSVPEIEEVIGDYGDISA + FDGSWE" + gene complement(3698033..3699091) + /locus_tag="Ccel_3163" + CDS complement(3698033..3699091) + /locus_tag="Ccel_3163" + /inference="protein motif:TFAM:TIGR00180" + /note="TIGRFAM: parB-like partition protein; + PFAM: ParB domain protein nuclease; + KEGG: aoe:Clos_1923 nuclease" + /codon_start=1 + /transl_table=11 + /product="parB-like partition protein" + /protein_id="ACL77454.1" + /db_xref="InterPro:IPR003115" + /db_xref="InterPro:IPR004437" + /translation="MGTTKIDFSKKLDKPSDNAFAQMFNLNTTNKNKENATEIDINLI + VPFKNHPFRLYTGEKLRQMVESIKENGVIVPIVVRKKDDGTYENLAGHNRVNAAKLAG + LTKVPAEIKEDITDAQAKIIVTDSNFIQRSVEEMLPSELAKSLQMQLEACKEAKQKRE + LINAIESYSNTDNNGLRATSTQVVQGQWSVDEVGNKNKMSRENVRRYIRLNYLNEELL + NMLDEGSIKLNPAVSLSYLTIDEQNILFSILNKNDYRIDMKRADKLKERSGKLTEDDI + LAIASGEFFEKKKRPKLTAVKVKPKLISRFFNAYATQTEITSTIEQALEEYFERRRQE + AEDSEKENNKEVEGDEEN" + gene complement(3699092..3699871) + /locus_tag="Ccel_3164" + CDS complement(3699092..3699871) + /locus_tag="Ccel_3164" + /inference="protein motif:PFAM:PF01656" + /note="PFAM: Cobyrinic acid ac-diamide synthase; + KEGG: lrf:LAR_0100 chromosome partitioning protein ParA" + /codon_start=1 + /transl_table=11 + /product="Cobyrinic acid ac-diamide synthase" + /protein_id="ACL77455.1" + /db_xref="InterPro:IPR002586" + /translation="MGKVIAIANQKGGVGKTTTAVNIAAGLVKEGLSVIGIDLDPQAN + MSDYLGYDNKSLYNISDLMVAAANNNLSDEYIVESIVHSKEGIDYIPSSIKLSGADLF + LSNVMCREQVLNRILKKEIFSKYDYIIIDCLPSLGILLTNALAAADSLIIPVQAQKFA + LDGLVQLEQVYNMVKVNVNPELKIDGVILTMADNTNMSKAVEAELERKYGDTLFVTRI + HKRVEATNSTFEQKSLVSMENSVLGAEYRNVTKELIERSRV" + gene complement(3699965..3700366) + /locus_tag="Ccel_3165" + CDS complement(3699965..3700366) + /locus_tag="Ccel_3165" + /inference="similar to AA sequence:KEGG:LPC_0185" + /note="KEGG: lpc:LPC_0185 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77456.1" + /translation="MTEIMQSIHKTWDSLIFAGSKNLELRKSKPIGIRYPAKVYIYET + KQCGGCGMVVGDYLLKFEPSDSLFENRNKLMGILSAHSCVPPQDIMKYQAGKGTIYAW + RISNVKKYDHPMNLTDFGLNKAPQSWCYLNR" + gene complement(3700371..3700514) + /locus_tag="Ccel_3166" + CDS complement(3700371..3700514) + /locus_tag="Ccel_3166" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77457.1" + /translation="MGFCGSCMQFEEDQTGKCTCKKFDMPCKAGQKACMYFTSNNTNL + VGR" + gene complement(3700565..3701098) + /locus_tag="Ccel_3167" + CDS complement(3700565..3701098) + /locus_tag="Ccel_3167" + /inference="protein motif:PFAM:PF01844" + /note="PFAM: HNH endonuclease; + KEGG: mhu:Mhun_1686 HNH endonuclease" + /codon_start=1 + /transl_table=11 + /product="HNH endonuclease" + /protein_id="ACL77458.1" + /db_xref="InterPro:IPR002711" + /translation="MNINRLKEGEKNLPYNNKGKRYWLSLWNYAKQYPNDNILYQMPD + YRADKNTCKWCGQSLKSKRQQSYCCEDCKIEFQRLAVWGRGVAPLPYRILCRDNFTCK + ECGLFAAYKNKHGLFVPIAVGLDVHHLIQVSEGGTDQQNNLITICNDCHNQIHGIRSN + SKKNLVKSSIYYSELKI" + gene complement(3701095..3701256) + /locus_tag="Ccel_3168" + CDS complement(3701095..3701256) + /locus_tag="Ccel_3168" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77459.1" + /translation="MFKCNKCKFYGDERSAGLINHCFNEDLTEEEHDKYRNKGEGNCP + CYIEDNDVN" + gene complement(3701296..3701523) + /locus_tag="Ccel_3169" + CDS complement(3701296..3701523) + /locus_tag="Ccel_3169" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77460.1" + /translation="MYCDGKEFENMKKRPLNEEQLEHMKNVHEHHVACNGTERQKNMA + IIDSWVDEYGNVCVRLANNEWYHYYSNGTWG" + gene complement(3701568..3701816) + /locus_tag="Ccel_3170" + CDS complement(3701568..3701816) + /locus_tag="Ccel_3170" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77461.1" + /translation="MKKCLAECSKFYCLKQDDKKKGIKCKPCIINDGDSICDECVLKE + KCLEEKAKISALEEKRDNCTITEEEEKRLHYLTWKFYC" + gene complement(3701850..3702047) + /locus_tag="Ccel_3171" + CDS complement(3701850..3702047) + /locus_tag="Ccel_3171" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77462.1" + /translation="MDKIKLSTLSKDDVVLVEGRSQVNTVEDIKELQVIFDRILARSP + SCNIAYETDKLIEIDVSTSNG" + gene complement(3702113..3702472) + /locus_tag="Ccel_3172" + CDS complement(3702113..3702472) + /locus_tag="Ccel_3172" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77463.1" + /translation="MRLEELKNVRNFKITDIEHFKSVVIEAIERTCHWKEFDEWLHEE + YENCSNESNQYRAKIIVINESYRRDTTKCFKVDSKNISSVTIYSIFYTDTCGGGFVIS + DINLFYDEIKSFEKLLK" + gene 3702636..3702845 + /locus_tag="Ccel_3173" + CDS 3702636..3702845 + /locus_tag="Ccel_3173" + /inference="similar to AA sequence:KEGG:Saro_0028" + /note="KEGG: nar:Saro_0028 XRE family transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, XRE family" + /protein_id="ACL77464.1" + /translation="MIKYKIDVLLSLKNAGFTTYKLRKDKLFGEATIQKLRNLELVSW + DNINMVCSLLNCQPGDVLIYEKDSE" + gene complement(3702895..3703158) + /locus_tag="Ccel_3174" + CDS complement(3702895..3703158) + /locus_tag="Ccel_3174" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77465.1" + /translation="MIKLNVQGETEKINDFMKNLRESNFYFSVTDQSENNSNNISLVV + SEAPGKVPDETEFSFRGFIAEWIREGLGEFIKRVSRVSTWFQT" + gene complement(3703179..3703493) + /locus_tag="Ccel_3175" + CDS complement(3703179..3703493) + /locus_tag="Ccel_3175" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77466.1" + /translation="MNENFKTLMNLTKATLEQEYKDYSNGYLFVLANLIDGGTSVRYI + EVQSKVIDVIKSSRQVANQLNEYFDSDASLANSLIDYIIDDIAIDASSVVTDEEEQEM + EK" + gene complement(3703516..3703644) + /locus_tag="Ccel_3176" + CDS complement(3703516..3703644) + /locus_tag="Ccel_3176" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77467.1" + /translation="MIKVSMEGEAERIPQIYSIELQKEALGEFIKRVSRLSTWLRT" + gene complement(3703670..3709903) + /locus_tag="Ccel_3177" + CDS complement(3703670..3709903) + /locus_tag="Ccel_3177" + /inference="protein motif:PFAM:PF00271" + /note="PFAM: helicase domain protein; + SMART: DEAD-like helicases; + KEGG: efa:EF2307 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="helicase domain protein" + /protein_id="ACL77468.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR002296" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MPSFKTMFNETMKQITRNDSQWKKFLGFSGQLFKYGFYETVLIY + NQRPDATIVADMDTWNKRVGRWINRGSRAIKVFDPDSKGVRYLFDISDTHGNYTSRIN + SYTIKSNAAQNYIMEYLGVEKERDFEGFVESLCTEFLEKHDYPGEYFDCFVQDSVVYS + VFDKLKFDTEGKYHFEDILQQLDVGQATEYASIICEISKQVLRLLEKPARIYKNKEIS + KNANQIHRRNWTSGISGDTGGNTGSHEQRDGDNKESGTDIQSGVQGRIGGDTLSGDIT + GREPRVGGNAGRDIRSGSSEILGTKLPEESAGNEDSGYMVQYNLSGRHTSSFNDAKDS + GTVKTAISGTQNGQLHGTGEILQLDKGNSSGNSDERSSQNSKIKENNSGKDKESSENG + GSNFLPRNQQTLFDLIEIKENEVEKLTSEFFNGVERTGEKLDLAIKELEDSENQKRPQ + NEIEQDQNEYTAAISKKVNYRYNPSDDIGAGGQKTKYKANVEAIKLLKDIEKEKRIAT + SQEQSILTRYTGWGGLSQVFNAEAKGWENEYQELKELLTEEEYSSARASTPNAHYTEP + QVIKAIYKALSRFGFKGGNILEPAMGIGLFYSLIPEDISDKSQLYGVELDSISGRISK + QLYQKADIRIQGFEDTDFSDNFFDIAVGNVPFGDYKLRDKRYDKLNLNIHDYFFAKTL + DKVRPGGIIAYITSKGTLDKANGSFRRYLAERAELIGAIRLPNNAFKQIANTDVTTDI + IFLQKRDHAIILDEEPAWTGLGQTDDEVPVNQYYLDNPDMLLGKMIFDNRMFGSDGKY + TSLVAEDNFNLVEALDKAAEKLHARIEIIDTGKENQEEEYLPAEPEVKNYTYVLKDEN + IYYRENSKMAKVILPEKTSQRVRGMCEVREILRKVIEIQTEGCTQEELKPYQEKLLKS + YNTFTRKYGIINSTANLRAFQKDSDLPLLSSLEVLDEKGNVKSLADIFYKQTIRPYEI + ITQVSTAADSLAASLSEKGEVDLDYMASIYKADKQKIISELEGLIFLNPDKKRYETAD + EYLSGDVRYKLKTALYYAKDNPDYQINVKALESVQPVDLDASEIDVKLGTTWIETEDI + NQFIYELLKVPGFFQRDNSKSKGTGIYTTYNSFSSSWSIQNKSLQWNSMKATEEYGTK + KADAYSIIEDTLNLRSVVVKDRVEDADGKVKYVVNKNETIAARAKQDAIKEEFRDWIF + KDPDRRNKYVNFYNTNFNNIRLREYDGSHLKFPGMSPYIKLREHQKNAVARILYGGNT + LLAHVVGAGKTFTMQAACMEMRRLNIIKKAMFVLPNHLTEQQGADFLKLYPAANILVA + TEKDFETANRKRFLARIATGDYDAIIIGQSQFERIPVSVELQSQIIKNTIEEIVEFVS + AYKQQNGDKWTIKQMEKMKFNLEAKLEQLADAPKDDVLTFEQLGVDCLFVDEAHYYKN + GGVFTKMRNVAGISGNSAKKVLDMQMKCDYIISENNGRNVIFATGTPISNSMTEMFIM + QQFLQKNELREKGIHNFDAWAASFGEVVSALELAPEGRGFRMRNRFSKFTNLPELMTM + FKNIADIQTADMLNLPVPKLKNNKVTVVTSEPSELQQELVQESAERAERIRNGLVDPS + IDNMLKITNEARQFGTDPRLIIPDAPDEPGSKINKLVDNVYQKYIEFNSSKGTQIIFS + DVGTPNDRGGFCAYYDIKNKLVSFGIPEDEICIIHDAKTKKQKESMFSAMRTGEKRII + LGSTPKMGTGTNIQNKLVALHHLDCPWRPADIEQRDGRILRQGNENEKVEIFRYVTKD + TFDGYLWQTVEQKQRFISQIMTSKAVSRSCEDIDEVVLNYAEIKALAMGDPRIKEKMD + LDIEINKLSVLKAAWSKQRYSLQDSIVYSIPKGINSYQVKIEAIQKDIELRNSNKFPD + DEFSIVLENTLITEKEKAGELLLLLCSKAKKENWKQVRIGTYKGFDLKLEYNEFLSGF + NLHITGKYQYTIELGGNPIGNITRTDNALEGMEPSLQRCRNQLEQLNQDFETAKAEYE + KPWRYEEEYKTKLARQAELNIELDLNKQDEVLGDEASIEDKEVAINVSSVVTDEEEQE + VEM" + gene complement(3709969..3710739) + /locus_tag="Ccel_3178" + CDS complement(3709969..3710739) + /locus_tag="Ccel_3178" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77469.1" + /translation="MEKENSVWQGISSKVIYYLRLNGYGAASLNTSGKEGNWDTEKIC + VTKDGRDLCDINCIEGTITYLNASDQEEIDSIRDFINDLQEQERIFTRAEPMQVEGLK + HHKVLVEYNNVILTACESESLNSSMQKVNSYQYVTWEKDRGGLQLGVHSGNYFSDNYT + CAKENFAVRAGILRKSKLLSETEMMAIYSGIIKLEDNENNIDGSNKIFKQIKQKIQDI + IPDIEARIYRNDPRFITSSVNETVVLEEDLELYEQELQ" + gene 3710868..3711014 + /locus_tag="Ccel_3179" + /pseudo + gene complement(3711085..3711579) + /locus_tag="Ccel_3180" + CDS complement(3711085..3711579) + /locus_tag="Ccel_3180" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:CTC01854 transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="putative transcriptional regulator, TetR family" + /protein_id="ACL77470.1" + /translation="MTVMPFSKIRIQNITDIAEVHRHSFYNHFNDKYDLLYQIVTQML + VIDYDAVAEESLIEQSINQVPRILRYFEDNRKFFKSAFKDDKQQSFNNFFQKLIFEWF + TTILNNGADKARMDSFYITQARFYVAGYSQLLMYWLYNEPEKPADVLAEEIIKIFKSA + FNNN" + gene 3711762..3712979 + /locus_tag="Ccel_3181" + CDS 3711762..3712979 + /locus_tag="Ccel_3181" + /inference="protein motif:TFAM:TIGR01426" + /note="TIGRFAM: glycosyltransferase, MGT family; + PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; + Glycosyltransferase 28 domain; + KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase, MGT family" + /protein_id="ACL77471.1" + /db_xref="InterPro:IPR002213" + /db_xref="InterPro:IPR006326" + /db_xref="InterPro:IPR007235" + /translation="MSHVLFINVFGYGHINPTVSIVGELLDRGEKVTYVAGEEFKDKI + EHMGARFIGYKNFDELGFNNGEISPAEIEPQLMEISRVYVEIIETVFNIKDNFDYIIY + DSLFFLGAEIARVLKIPAISSDSTFAVNDKTNYMSEFFAKFGPVIMGLTSRPDFLSTI + NYLRDKYGIIVPDLFSIHKLKSDINIIYTSRYFQICGESFDDSYKFVGPSISDRKEKP + ESTLIYKDKSKLIYISLGTIFNKSVEFYESCFKAFGSMDVKIIMSVGMNIDISSFKNV + PNNFIIRNYVPQLEILKYADLFITHGGMNSTNEGLYYSVPLIVIPHFFDQPVVAYRVA + ELGAGIVIEKDKVSPEILKESVNRIFSNKAYKENSEKIGKSLRGSGGYKKGVDEIFAL + KDSKKTTGNLIYI" + gene 3713005..3713715 + /locus_tag="Ccel_3182" + CDS 3713005..3713715 + /locus_tag="Ccel_3182" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbe:Cbei_3683 cell wall-associated + hydrolase-like protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77472.1" + /translation="MKKKLFSSLLCAALIFANVIGSNVYAFDLKADSGLQSYISRPNA + DTKDAEAIYKEIIDTLSFQVYIEKNWNNLSVEKDMDLYNSTDKWVGKPGDILITVFDK + NNSDINAITMGSLTTHAAFVDSDPTKVLELFQDGIAKRENDWRTRYKKILIVRPKVDP + KIISDAIAYGYTKIGTPFSYFTNMFQKTKIDKYYCSQFVWDCYLKSGVDLDGNGGKAV + FPYDFLRSDKVSIVYKQG" + gene complement(3713871..3715148) + /locus_tag="Ccel_3183" + CDS complement(3713871..3715148) + /locus_tag="Ccel_3183" + /inference="protein motif:TFAM:TIGR00414" + /note="TIGRFAM: seryl-tRNA synthetase; + PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA + synthetase, class IIa-like; + KEGG: cbe:Cbei_1431 seryl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="seryl-tRNA synthetase" + /protein_id="ACL77473.1" + /db_xref="InterPro:IPR002314" + /db_xref="InterPro:IPR002317" + /db_xref="InterPro:IPR006195" + /db_xref="InterPro:IPR015866" + /translation="MLDLKFVRENPEIVKQNIRNKFQDKKLGLVDEVISLDSELRSAK + QEAEALRANRNKISKQIGGLMAQGKKAEAEEMKQQVTAQSECLAALEAKENELEEKVK + NVLMAIPNIIDPSVPIGKDDSENVEVQRYGEPVVPDFEVPYHTEIMEKLKGIDLDSAR + KVAGNGFYYLMGDVARLHSAVISYARDFMINQGFTYCIPPFMIRSEVVTGVMSFAEME + AMMYKIEGEDLFLIGTSEHSMIGKFIDTIIPEASLPHTLTSYSPCFRKEKGAHGIEER + GVYRIHQFEKQEMVVVCKPEDGMIWYEKMWQNTVDLFRSLDIPVRTLECCSGDLADLK + VKSVDIEAWSPRQKKYFEVGSCSNLGDAQARRLKIRVDGENGKYFAHTLNNTVVAPPR + MLIAFLENNLNQDGSVNIPVALQPYMGGMAVIK" + gene complement(3715501..3716061) + /locus_tag="Ccel_3184" + CDS complement(3715501..3716061) + /locus_tag="Ccel_3184" + /inference="protein motif:TFAM:TIGR00277" + /note="TIGRFAM: metal dependent phophohydrolase; + KEGG: cpy:Cphy_1236 metal dependent phophohydrolase" + /codon_start=1 + /transl_table=11 + /product="metal dependent phophohydrolase" + /protein_id="ACL77474.1" + /db_xref="InterPro:IPR006675" + /translation="MSTLTREKAWELLTEYNKDAFHLKHAQVVEGVMRYFARQLGYSE + EEDFWGIVGLLHDLDFEQYPEEHCIKQQEIMKERGIDPRIIRATASHGYALTVDIRPE + HQMEKVLYAVDELTGLIGAVALMRPSKSVSELEVKSVKKKYKTSSFAAGCSREVIERG + AELLGWELDYLIQQTILAMRECDAVD" + gene complement(3716111..3717286) + /locus_tag="Ccel_3185" + CDS complement(3716111..3717286) + /locus_tag="Ccel_3185" + /inference="protein motif:PFAM:PF00155" + /note="PFAM: aminotransferase class I and II; + KEGG: cpy:Cphy_0455 aminotransferase class I and II" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class I and II" + /protein_id="ACL77475.1" + /db_xref="InterPro:IPR001176" + /db_xref="InterPro:IPR004839" + /translation="MDYNFDEIIDRKDTDSIKHDFYGVNGIPDDAISLWVADMDFRTP + APVIDALVKSGKHGVFGYTETREDYFLTLQKWFTENYDWQIHSSWLVKTPGVVFAIAM + TVRALTNKGDAVMIQRPVYFPFSKVILDNKRILVNNPLIYNSGTYSMDFEDFETKIIE + NGVKLFILCNPHNPVGRVWTRDELIRLGDICIKHGVTVISDEIHADFIYSGYRHQVFA + NIKPEFGKITVTCTAPSKTFNLAGLQVSNIIISNRELKEAIKNEISRTGHGQLNTMGI + VACKAAYEHGHEWLQQLKAYLAGNLSFVRNFLAERLPKIKLVEPQGTYLVWMDFTELG + LTEKELEKLIVSDARLWLDSGTMFGDEGKGFQRINIACPRVILEKAFLQLEAAVNRL" + gene 3717532..3718464 + /locus_tag="Ccel_3186" + CDS 3717532..3718464 + /locus_tag="Ccel_3186" + /inference="protein motif:TFAM:TIGR01139" + /note="TIGRFAM: cysteine synthase; cysteine synthase A; + PFAM: Pyridoxal-5'-phosphate-dependent protein beta + subunit; + KEGG: cpy:Cphy_0011 cysteine synthase A" + /codon_start=1 + /transl_table=11 + /product="cysteine synthase A" + /protein_id="ACL77476.1" + /db_xref="InterPro:IPR001216" + /db_xref="InterPro:IPR001926" + /db_xref="InterPro:IPR002347" + /db_xref="InterPro:IPR005856" + /db_xref="InterPro:IPR005859" + /translation="MANVYKSLTELIGKTPLLELSNYNKKYDLKATIIAKLEYFNPAG + SVKDRIAKAMIEDAEEKGILKEGSVIIEPTSGNTGIGLASVAAARGYKTILTMPETMS + IERRNLLKAYGAELVLTEGAKGMKGAIAKAEELAAATPNSFIPGQFVNPANPAVHKAT + TGPEIWEDTDGKVDIFVSGIGTGGTITGTGEYLKSQNPNVKVVAVEPAGSPVLSKGTT + GPHKIQGIGAGFVPDTLNTKIYDEIIAVENEDSFVVGRELSKAEGLLVGISSGAALWA + ATELAKRPENAGKTIVVLLPDTGERYLSTPLFSE" + gene 3718640..3719434 + /locus_tag="Ccel_3187" + CDS 3718640..3719434 + /locus_tag="Ccel_3187" + /inference="protein motif:PFAM:PF04127" + /note="PFAM: DNA/pantothenate metabolism flavoprotein + domain protein; + KEGG: efa:EF2655 phosphopantothenate--cysteine ligase" + /codon_start=1 + /transl_table=11 + /product="DNA/pantothenate metabolism flavoprotein domain + protein" + /protein_id="ACL77477.1" + /db_xref="InterPro:IPR007085" + /translation="MVVLITAGGTTEKIDDVRAISNNSTGKLGTAIAEAFLSCESISI + EKIYYVCGQNAVVPSSDKVRIIRIDGVAQLASELQEILESRKVDIVIHSMAVSDYGVD + FVTTKNSIFRSIETFITEKSDKLTTLPPRDLASNITDYIFSNSAVNNENKLSSDINDL + IISLKKTPKIIGMIKKLQPETTLVGFKLLSNVAKEELIDVGFGLLEKNNCEMVLANDM + TRITKDSHTGHLIFKDRTYLTFETKAQIANAIAAHSIEIALGKGRI" + gene 3719436..3719972 + /locus_tag="Ccel_3188" + CDS 3719436..3719972 + /locus_tag="Ccel_3188" + /inference="protein motif:PFAM:PF02441" + /note="PFAM: flavoprotein; + KEGG: efa:EF2656 phosphopantothenoylcysteine + decarboxylase" + /codon_start=1 + /transl_table=11 + /product="flavoprotein" + /protein_id="ACL77478.1" + /db_xref="InterPro:IPR003382" + /translation="MRNIILGVTGSIAAYKAADIANILTKRGYNVDVIMTKSAMEFIT + PLTFQSLTKNKVYLNMFEEITPKEIKHISLAKKADLCLIAPASANLIGKIVSGIADDM + LTTVVMAMNNVPVYICPAMNTNMYNNPIVQRNITTLSELGYRFIDPKEAVLACGDLGK + GALADVETIINTVEGYFK" + gene 3720031..3721068 + /locus_tag="Ccel_3189" + CDS 3720031..3721068 + /locus_tag="Ccel_3189" + /inference="protein motif:PFAM:PF04055" + /note="PFAM: Radical SAM domain protein; + SMART: Elongator protein 3/MiaB/NifB; + KEGG: cpy:Cphy_2083 biotin synthase" + /codon_start=1 + /transl_table=11 + /product="Radical SAM domain protein" + /protein_id="ACL77479.1" + /db_xref="InterPro:IPR006638" + /db_xref="InterPro:IPR007197" + /translation="MKELIDKLYETQVLERKELVHLLNNFSADISDYLFEKSRLVAKN + NFGNSIYTRGLIEFTNFCKNDCYYCGISKSNKNADRYRLSMEEILSCCETGYELGFRT + FVLQGGDDGYYSVDKVVEIIKKIKSAYPDCAITLSIGEHSYESYKKFYEAGADRYLLR + HETATDVHYKKLHPAELSLANRKQCLYNLKEIGFQVGTGFMIGSPFQTVENLADDLLF + IKEFKPHMIGIGPFIPHKDTRFFNEKQGSLELTLLLIGILRLMHPKVLIPATTALGTI + DPKGREKGILAGANVVMPNLSPVNVRNKYSLYDNKICTGEEAAECRFCLQNRMQKIGY + ELVIDRGDYKE" + gene complement(3721141..3721512) + /locus_tag="Ccel_3190" + CDS complement(3721141..3721512) + /locus_tag="Ccel_3190" + /inference="protein motif:PFAM:PF08000" + /note="PFAM: protein of unknown function DUF1696; + KEGG: cdi:DIP0385 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1696" + /protein_id="ACL77480.1" + /db_xref="InterPro:IPR012544" + /translation="MAETSSILVWTLVSECPIPDDVIDLMVEGEVAVAAYKTFRDSAI + FTNKRLIVRDAQGLTGKKVEVYSLPYSSINMWSTENAGRFLDFNAEVELWTRAGHIKI + NLQKGVDIRKFDKLIANALLK" + gene complement(3721630..3722730) + /locus_tag="Ccel_3191" + CDS complement(3721630..3722730) + /locus_tag="Ccel_3191" + /inference="protein motif:PFAM:PF00294" + /note="PFAM: PfkB domain protein; + KEGG: ote:Oter_4259 ribokinase-like domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="PfkB domain protein" + /protein_id="ACL77481.1" + /db_xref="InterPro:IPR011611" + /translation="MSIINLKPEGSYTYDCISLGEVMLRLDPGDGRIKNTREFKVWEG + GGEYNVSRGLRKCFGMKCAVVTAFAENDIGKLIEDLVLQGGVDTSLIKWIPFDGIGRA + VRNGLNFTEKGFGIRAALGVSDRANTAASQLKVGDIDWEHIFGKLGVRWFHTGGIFAA + LSETTPDVVIEAVKTAKKYNSIVSYDLNYRPSLWNYIGGNKKAQKVNKEIAKYIDVMI + GNEEDFTQCLGFEVEGNDKNLKELDIEGYKKMIDRVVEEYPNLKVVATTLRGVKTATI + NDWRAICWAEGTIYKSMEFPGLEIYDRVGGGDSFASGLVYGLMTTGDAQKAVNYGVAH + GALAMTTPGDTSMASLKEVESIMKGQSARVVR" + gene complement(3722765..3723409) + /locus_tag="Ccel_3192" + CDS complement(3722765..3723409) + /locus_tag="Ccel_3192" + /inference="protein motif:TFAM:TIGR01182" + /note="TIGRFAM: 2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase; + PFAM: KDPG and KHG aldolase; + KEGG: amt:Amet_1261 2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase" + /codon_start=1 + /transl_table=11 + /product="2-dehydro-3-deoxyphosphogluconate + aldolase/4-hydroxy-2-oxoglutarate aldolase" + /protein_id="ACL77482.1" + /db_xref="InterPro:IPR000887" + /translation="MIDKNIVLKKICDCGVVAVVRAESPEQAIKIADSCVEAGISAIE + ITFTVNGALDVIKKLAESNKGNKILKGAGTILDPETARAAILAGATFIVSPCLNKEVV + KVCNRYQVACMPGAMTVKEAVECMEAGADIVKVFPGELFGPAIIKAFRGPLPQIKLMP + TGGVSLKNTAEWIRAGSVAVGVGGNLTAGAKKGDYKSIVTIGKQFIEKVKQARV" + gene 3723574..3724251 + /locus_tag="Ccel_3193" + CDS 3723574..3724251 + /locus_tag="Ccel_3193" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; GntR domain + protein; + KEGG: cbe:Cbei_4085 transcriptional regulator, GntR + family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, GntR family" + /protein_id="ACL77483.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR011711" + /translation="MNPFQRNVLPLKEVIYIEVKNRILNLEYKPGQMISETEISELLN + VSRTPVREVFIRLSLEKLIDIYPQKGTFVSLVDLSYVKESVYMRNILECQIAGEIINS + GLKTLPAEIKKNIGLQKYLVENEGNIEEFLELDNDFHKVIFKAVNHDTIWDIISTTRI + HYNRFRLLTMYEPEMMKKVYQEHFDIMNKIEEGDKKGCNALLKQHHYNGLEHTDILKE + KYPGYFL" + gene complement(3724558..3725283) + /locus_tag="Ccel_3194" + CDS complement(3724558..3725283) + /locus_tag="Ccel_3194" + /inference="similar to AA sequence:KEGG:lwe0436" + /note="KEGG: lwe:lwe0436 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77484.1" + /translation="MFIKKKINWEKTTFWFVFATLVLSTGFSLVNVITAPSKPVLGEE + FVKLRSDYVLMLIQCIMGMIIMFLPSIIERKWRINIPGFMHIVFVFFLYAAIYLGEVR + SFYYKIPHWDTVLHTFSGAMIGALGFSIVKLLNDSEKVQINLSPLFVAAFAFSFALAI + GALWEIYEFAFDKLLGLNMQKFAHEDGSPMVGRAALADTMKDLIVDSLGALATSITGF + ISLKFKKGWLEKFEVTRSRKVSM" + gene complement(3725493..3726578) + /locus_tag="Ccel_3195" + CDS complement(3725493..3726578) + /locus_tag="Ccel_3195" + /inference="similar to AA sequence:KEGG:Acid_4088" + /note="KEGG: sus:Acid_4088 OmpA/MotB domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="OmpA/MotB domain-containing protein" + /protein_id="ACL77485.1" + /translation="MSKSKFTKIIVVICIAAMFITGTSILSFAEDGTVQQSNVQIVRF + DADSYNITPNQSVTISWKVLNADKVEITNMAGQGLSHEGSLEVWLMETTTFTLKAYDA + NGEVTSRSITVNLEHLEIKKFTVSRNEISAGETVELSWDVSGATDVSIPELTEKDLPT + FESIQIQPLKTTTYTLTAYGLDGGVVKGEVTVKVNEPEITDFSADKYELDPGDSATLS + WNAPGFQTIKIVGLEDEGHLPLTGTLKVSPQQTTTYTLEATTYDGIVKSKQITVKVKK + PVITSFTVDKPSITKGEMFKLSWTSEYADHCYLTTNYGNKLLNRQPNGGITVASSRDI + TFELTAVDKYGNEVKSKIEIKVSTGVN" + gene complement(3726593..3728491) + /locus_tag="Ccel_3196" + CDS complement(3726593..3728491) + /locus_tag="Ccel_3196" + /inference="protein motif:PFAM:PF00082" + /note="PFAM: peptidase S8 and S53 subtilisin kexin + sedolisin; + KEGG: mem:Memar_1274 peptidase S8 and S53, subtilisin, + kexin, sedolisin" + /codon_start=1 + /transl_table=11 + /product="peptidase S8 and S53 subtilisin kexin sedolisin" + /protein_id="ACL77486.1" + /db_xref="InterPro:IPR000209" + /translation="MSGFKKFLVIPFILIFLAVYPLTSYVESAETDSAPYSLTEITKL + QIIKEVNGVKLAKAIFNNQDIKDIVIFKDGSIEEYSKEKHGKLFEKDKLSKKLKEKIK + KSSSDEEIPVAVHINDIDHNEVEKYVKDKLKIKDIKDEKPEKIKEYIKEKRIKSKEEY + KKSNSQFVKEYINNEEELFESQYSPLIIIRLTNMDIEKLSKNMQVQEMDLFVDSTKEE + DTYNSIPNINSKYVKDNLNLRGDGVPIGILEVGYPNLDNTQLTDSNIIFDVPESTANR + RRSTHATIVTSIIVGQTEGIAPGATAYVATASSRLGDYEKIEWLIDQGVYVINYSAGY + SDVRGEYTDMAKWIDHISIQHDVIFVKSSGNKRLDNLGISDPGMAYNAFTVGSMNDND + SINEPNWLDDIFSPFSCYTENENSENPYPFKPDLTAPGESVDVAGYLSQAGTSISAPH + VTGVLAQMLGAFPNIFPRNSVMKAVTTAATLHKTTDDYGIYSMSPSLSDKEGAGVIDA + LSIYNCLSGSHFLTENLTESQFPYIHNIGVNADDTQSVRVSLSWLKNNIIPDSSQNVV + ERELSDLDLEVFDPEGNQVGYSMSANNNLEVVEFTPTMSGEYKIMVEGYALTNDSEQI + SLAWTESN" + gene complement(3728587..3729903) + /locus_tag="Ccel_3197" + CDS complement(3728587..3729903) + /locus_tag="Ccel_3197" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: sus:Acid_4088 OmpA/MotB domain-containing + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77487.1" + /translation="MFGKKTSRAISFLCVFALLFICISSSVFAAEPVKAPKIAFFKAS + SENVAFGETVTLSWRVLGAREVVITGEEKDVECISEDSIEVWPMVTTTYTLHAYGFNG + EEIIKSVTVKVGTAEIKNFTADKTEVAPGEDVTLSWDVFNTDGVSINALKGDNNDKLY + APQGTLTVNPFVTTTYELSAIGFDGEKVTKQMEVKVKDAVINSFTADKTEVDPGEDVT + LAWDIANAESAVIKEAGKDIQAVPGTLIVNPFVTTTYTLEVKGYDGKVVRQQVEVKVK + APEIVSFTADNTEVVPGETVNLAWEVKNAKSIEIIGIEKGSELTGTLEVWPLMTTTYV + LKAEGYDGTIVTKELTITVTSPLITKFEASKTTIKKGEMVKLTWATKNAVTCSLETDR + GQKIPKVNTNGSLSMTPNKTTIFTLTAVDADGNVAVKNITIEVVDK" + gene complement(3730187..3732790) + /locus_tag="Ccel_3198" + CDS complement(3730187..3732790) + /locus_tag="Ccel_3198" + /inference="protein motif:PFAM:PF00465" + /note="PFAM: iron-containing alcohol dehydrogenase; + Aldehyde Dehydrogenase; + KEGG: cdf:CD2966 bifunctional acetaldehyde-CoA/alcohol + dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="iron-containing alcohol dehydrogenase" + /protein_id="ACL77488.1" + /db_xref="InterPro:IPR001670" + /db_xref="InterPro:IPR015590" + /translation="MTKKNMVVNSVDTLLVKLAEIRKAQKEYSTFTQEQVDKIFLAAS + LAANKKRIPLSKMAQAETGMGVIEDKVIKNHYAAEYIYNAYKDTQTCGVIERDEAFGI + TKIAEPLGVVAAIVPTTNPTSTAIFKALIALKTRNGIIFSPHPRAKKCTIEAANVILE + AAVAAGAPKGIIGWIDEPSIELSERVMKEADIILATGGPGMVKAAYSSGKPAIGVGPG + NVPAIIDESADIKTAVSSIIVSKTFDNGMICASEQSVIVLDKIYNEVRKEFILRGAYM + LNKEETQKVREVILVNGALNAKIVGQTASTIAKLAGFEVPAETKVLVGEVESVELSEA + FAHEKLSPVLAMYKAKTFDDAVSKAERLIADGGFGHTASLYIDTVNSKDKLDKFTAAM + KTCRILINTPSAQGGIGDLYNFKLAPSLTLGCGSWGGNSVSENVGVKHLINIKTVAER + RENMLWFRAPEKVYFKKGCLGVALRELKTEMNKQRAFIVTDSFLYNNGYTKAVTNLLD + DMNIKHHTFFDVAPDPTLACAKLGAEAMRDFKPDVIIAIGGGSAMDAGKIMWTLYEHP + EVDFQDLAMRFMDIRKRVYTFPKIGEKAYFVAIPTSAGTGSEVTPFAVITDEQSGVKY + PLADYELMPKMAIVDADLMMNMPKGLTAASGIDALTHAVEAYASMLLTDYTKGLALQA + TKNIFEYLPSAYENGAKDPIAREKMADASTMAGMAFANSFLGICHSMAHKLGAFHHLP + HGVANALLITEVMKFNIAEAPTKMGAFSQYKYPEILKRYAEVASFIGITGSTDEEKFK + KLIAKIDELKAKVGLPKTIKEAGVDEEKFLATLDEMVEQAFDDQCTGANPRYPLLSEI + KDMYLKVYYGK" + gene 3733177..3733815 + /locus_tag="Ccel_3199" + CDS 3733177..3733815 + /locus_tag="Ccel_3199" + /inference="protein motif:PFAM:PF02607" + /note="PFAM: Methionine synthase B12-binding module cap + domain protein; cobalamin B12-binding domain protein; + KEGG: csc:Csac_0423 cobalamin B12-binding + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="Methionine synthase B12-binding module cap + domain protein" + /protein_id="ACL77489.1" + /db_xref="InterPro:IPR003759" + /db_xref="InterPro:IPR006158" + /translation="MSTLNEISQALQSGKAKIVKELVQKAIDDGISAGDILNNGLLDG + MSVIGDKFKKDEIYVPDVLIAARAMNAGTEILKPLLASSGTKAVGKVVIGTVFGDLHD + IGKNLVKMMMEGRGLEVVDLGINVPAQKFIDMAIQENAQIICCSTLLTTTMPEMENVV + NAAKNAGIREKVTIMIGGAPVNQSYCDKISADIYTPDAASAAEEAVKACQSA" + gene 3733882..3734643 + /locus_tag="Ccel_3200" + CDS 3733882..3734643 + /locus_tag="Ccel_3200" + /inference="similar to AA sequence:KEGG:Oter_3656" + /note="KEGG: ote:Oter_3656 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77490.1" + /translation="MLRLKVISCDVLNREISYLASQSEHYIDVTFLHQGLHDTPEKLN + KRLQYEIDRANEGFPYNYFDTCPDYDYIIVCYGLCSNGITGICSQRLPLVVPKAHDCI + TLLLGSKEKYMELFRQQPGTYWFSTGWIERGWQPGELKYTILKKEYIQKYGEENAEFL + MEMEQSWMKEYNNAGFISWDCFNNNDFYRSSVRSAADFLKWNFFEIPGNPGLLQNMLN + GRFNKNKVLIVPPGIRIAASNDNDIIKVEGDNLDV" + gene 3734636..3736480 + /locus_tag="Ccel_3201" + CDS 3734636..3736480 + /locus_tag="Ccel_3201" + /inference="protein motif:PFAM:PF00111" + /note="PFAM: ferredoxin; + KEGG: tte:TTE1028 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ferredoxin" + /protein_id="ACL77491.1" + /db_xref="InterPro:IPR001041" + /translation="MFKVTVRNNEYSKVYTTNKGKNLLDLLRENGFYIDSPCNGNGTC + GKCRVKLILGNNSSARAEEIKVLGREALESGYRLACRYHINSDIDISIDQNDLQAKIL + TESIQRSIELNPLVTKVYNVLEKPALGNSISDYDRIIIGEFNDNPFHLKNLELLRSLH + DVIRKENFQVTLVIDSSDIIAVEPGNTVNTLYGIAVDIGTTTIAAYLIELTTGKKTCV + TSLLNPQKAFGADVISRISYIMQNEHGLEHLNTLLVQSVNICVAMLCKQAGILPADIY + AMTFAGNTTMQHILLKVNPSNIASAPFVPVFTSVVKVKARELSIDINPNGTAYFLPGV + SAYVGADTVGAVLTVGMHRQASTSLLIDIGTNGEIVLGDKDGMYACSAAAGPAFEGAN + IKNGMGSVNGAINSVSLKHGITFTTIGNTKPLGLCGTGVVDLLAELLEVGIVDETGRI + DMAWKPDSPEQEALCERITSTDGVNSFILCKADETLSGSEILLTQRDIREIQNAKAAI + AAGIRVLVKNAGIWFEDIKNVYLAGGFGSYINIDSALKIGLIPVELEGRIISVGNAAA + QGAINVLTSKALLPVAQEISKSIIYIELSNSKDFNDYYIDCMTFEQEI" + gene complement(3736498..3737715) + /locus_tag="Ccel_3202" + CDS complement(3736498..3737715) + /locus_tag="Ccel_3202" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: csc:Csac_1050 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77492.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MESIIEIQNLKYEINNKKILDNISLKIKEGELVGLIGPNGAGKT + TLLKCLNGIYKAEGTVNINGTAVSRMNSKKLAGKVALMHQNTQIGFPFPAREVVLMGR + YPYLKRMQRESREDYKIARKNMEYTDTEMLEDYAINQMSGGERQRVLFAKTLTQETDI + ILLDEPTASLDITYQEQIFKYSRELSGQGKTVVAAIHDLKIAAKYCTRLVLMNDGRIV + ADGSPEEVLTSQNLSSVYGINALVYKNRITGLLDIYIHKLSEKNKSVKYHVIGGGGTA + GSVIRQLYEQGYYISAGVFSQGDSDIASAEVFGIDYLIEKPFSNISDELFNENLAYIK + NSNTTILCNMPFGQQNLRNLEAAAYAEKLVIIEDDLPEIRDFTGGKAIEIYNRLKRKA + VAVINSSRLHEVL" + gene complement(3737717..3738769) + /locus_tag="Ccel_3203" + CDS complement(3737717..3738769) + /locus_tag="Ccel_3203" + /inference="protein motif:PFAM:PF01032" + /note="PFAM: transport system permease protein; ABC-3 + protein; + KEGG: fnu:FN1969 hemin transport system permease protein + HmuU" + /codon_start=1 + /transl_table=11 + /product="transport system permease protein" + /protein_id="ACL77493.1" + /db_xref="InterPro:IPR000522" + /db_xref="InterPro:IPR001626" + /translation="MKNRKIKGSLKNIGLIPAMLILLLIVMVAGTAIGAVYVPFFDTF + KIILKNIGILKNATFSEGQEPIIFLVRFPRVLVAALAGTALASSGAVMQGMFRNPMAD + PGLLGISSGSGLGAVLAIKLGLTAASMYFMPLFAFAGAFIAIFVIYILSYQKGKVPVL + TLMLSGIAVSTFIGAITNIILTLSYDYQVKEFLFWSTGGLDGRRWEHVQLVLFPIIVS + VILMFVFSRDLNILMLGEEEARSVGLSSGKIRTILLILVSIATASAVCVSGAISFVGL + LVPHIMRLLVGPNYKKLLPASSIGGAVFLVACDLVSRVVAIPYEIGVGIITALLGAPY + FLYLLLRSKKEGGAVI" + gene complement(3738782..3739783) + /locus_tag="Ccel_3204" + CDS complement(3738782..3739783) + /locus_tag="Ccel_3204" + /inference="protein motif:PFAM:PF01497" + /note="PFAM: periplasmic binding protein; + KEGG: csc:Csac_1048 periplasmic binding protein" + /codon_start=1 + /transl_table=11 + /product="periplasmic binding protein" + /protein_id="ACL77494.1" + /db_xref="InterPro:IPR002491" + /translation="MKRSLRILCFILGVVLITGIFTACTREENQQASGTTQAVDTSVK + NTAEKYPLILKDAKGNMVTLQSRPEKIVSMPLGTCEMLMSMVDKSRIAAMTYYADDAK + VSNIAGEAKGVGKRTESNAEKIIALQPDLVLMDNMTDANVVKQLKDANITVFLLNTPS + NIDQVKDNLKLVGDVVGEEAKAQDLINWMDEKLKAVSDKIELMTDDQKQTVLDYSEMG + TTSGKGTNFDDIVTRAGLINPASKDGLEGWPELSKEMIIKYNPQIIILPSWYYDTKVN + FYSLNDKIKGDKALAGVKAVKNNKIISVPHNHISSTSQYAVLAVEDIAKVAYPELFK" + gene complement(3740203..3741381) + /locus_tag="Ccel_3205" + CDS complement(3740203..3741381) + /locus_tag="Ccel_3205" + /inference="protein motif:TFAM:TIGR01696" + /note="TIGRFAM: phosphopentomutase; + PFAM: metalloenzyme domain protein; Phosphopentomutase + domain protein; + KEGG: tte:TTE0463 phosphopentomutase" + /codon_start=1 + /transl_table=11 + /product="phosphopentomutase" + /protein_id="ACL77495.1" + /db_xref="InterPro:IPR006124" + /db_xref="InterPro:IPR010045" + /db_xref="InterPro:IPR013553" + /translation="MTNIDRVIMIVLDSVGIGELPDAAEYGDKGSNTLGNIVKNCKGI + NLPNLCRLGMGKIDGVDYLSVPEHIVGSYGRMDEVSKGKDTITGHWEIAGLQLAHPFP + TYPDGFPKEVLDEFEKLTGRGVLANCAASGTEIIKEYGEEHMKTGKLIVYTSADSVFQ + IAAHEELVPLEELYRICSIAREMLQGDHMVGRVIARPFIGEPGNFTRTPNRRDFSAEP + TSDTILDIMSKKGLDVIAVGKIEDIFSKKGVTLAEHTKNNMDGVDVTLKFMAQKNTGM + IFTNLVDFDMVFGHRNNPEGYKQALEEFDNRLPEILSAMGDNDMLIITADHGCDPTTP + STDHSREYVPVVIYGKGIKEDVNLGTRKTFADIACTVAEVFNAGNIFPGRSFLREIIK + " + gene 3741616..3742884 + /locus_tag="Ccel_3206" + CDS 3741616..3742884 + /locus_tag="Ccel_3206" + /inference="similar to AA sequence:KEGG:Nther_0726" + /note="KEGG: nth:Nther_0726 CapA domain protein" + /codon_start=1 + /transl_table=11 + /product="CapA domain protein" + /protein_id="ACL77496.1" + /translation="MKTRIILFRRTLYILCIMCFLLLISTTIVLAISVFNTSRISSPA + VTTSAASSSKGSAVNSENLQDIPPSTPSLPQSVTISAVGDIMLHQGNLNSAYDSKSRK + YDFTGFFEHVKPYLSSSDLTIANFETVTAGTGIKYRSYPLFNSPDSILPALSGSGIDI + LSTANNHCLDWGINGLTRTIQKIREYNMVNIGSSINGNDKYIIKEVKGIKIAILSYSQ + FFNGHEAKLSSRDKTKYLSTLNETQIQNDIKAVKGKGADAVITVLHWGNEYHRSPSTY + QTNLSKKILSWGADIILGSHPHVIQKSEIVKSNGKNKFIIYSMGNFISGYRRTDKAKR + MNKVFTEDGVIITLKLEKDTKSGINIKEVNYIPTWVDLNYLKNKPVYKILPIPAPDVN + APYINSRNKTFVKQSYINTMSLMAKFSGKN" + gene 3742975..3744762 + /locus_tag="Ccel_3207" + CDS 3742975..3744762 + /locus_tag="Ccel_3207" + /inference="protein motif:PFAM:PF00884" + /note="PFAM: sulfatase; + KEGG: cbb:CLD_1681 sulfatase family protein" + /codon_start=1 + /transl_table=11 + /product="sulfatase" + /protein_id="ACL77497.1" + /db_xref="InterPro:IPR000917" + /translation="MFNNLFSTFSNAFKNKPYRKAAIVSAIFIILNAFKTSLFNYLLL + PKTGVHLFTYKFWISLLVCIIVFSFVLSLKSRYVFLIVYIIQGIYCFTNISYFLYYHS + YLHFLQWISLFKEAMISASHFANPISVQLLVVFIDVPVALFIFFKCFKREVKSTRLPL + LRNVLIALSVAILIIIEIFNFSNRQSVVQFMNDRYSGETRIVERYGTVANGIVSIVQN + NTEEKLIKQINYGKNISSPSNVTASKSTVEQPNYVVIQVESMDSNIVKQKYKGSYIMP + YMSSLMNNSVYYPYTLSYHKGGGTSDAEFSVINSAETLDSFPAIKLSSYNYPNSVVSK + LAKASYNTMAFHGNVGTFYNRNIAFSKMGFKKFYDINSMNFDDEGWGAPDDKVFSFAF + GKIDKSTRPFYAHIITMTSHGPFESARNYYNNKAYDDIENEIVKNFYNSFSYVDESIK + DFVEKIQTKYSNTYIIIYGDHTPNISSKDFAQASFIDDGKYFEFVPMFVITPDHKKYV + EDSVVASFLDVSPTIMATSKLAYNIKTDGRSLLDTQTTPADIPFKGGSFDRIQLYNKI + STHKYVQEEPLWRKYLPSFISSSLIERHK" + gene complement(3744789..3745805) + /locus_tag="Ccel_3208" + CDS complement(3744789..3745805) + /locus_tag="Ccel_3208" + /inference="similar to AA sequence:KEGG:EF2212" + /note="KEGG: efa:EF2212 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77498.1" + /translation="MENDIHIKTAVLHILDTSVNFPVLSDKEIELSGETVEFLEKHIS + KIFEDTNLKKAQFIGEVNTIKDICNALKEDSGRFMEVTRAIGVMTFDFMLKNIDISSG + DLICCHFHAGNEPYLALLKLNYKTGFTHYVNQMEEGAVNSIIRYKTLLPSDGQKVDEA + VLISLETDEIKLIEKAYEINGTKEFYMSNYLIKCTTDLSDNQKLKIIDKVTQKISKKY + YDEDFDKVAKLKKVVSEGLEEKSEIRVDEIAQEVFDTNLAVREEYIQEIQKAGLIEEA + IKVPEKLAEKKFKTHKIKTDTGIEINFPLSYYDNRDMIEFANNPDGSISIIIKNVGKI + INKR" + gene 3745922..3746626 + /locus_tag="Ccel_3209" + CDS 3745922..3746626 + /locus_tag="Ccel_3209" + /inference="protein motif:PFAM:PF07719" + /note="PFAM: TPR repeat-containing protein; + Tetratricopeptide TPR_2 repeat protein; + SMART: Tetratricopeptide domain protein; + KEGG: cth:Cthe_1030 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="Tetratricopeptide TPR_2 repeat protein" + /protein_id="ACL77499.1" + /db_xref="InterPro:IPR001440" + /db_xref="InterPro:IPR013026" + /db_xref="InterPro:IPR013105" + /translation="MLFGRFRSSIYLFKANSAYQKGNTQEAINLLEKAYKTESAKAVV + VTTYGYLLLKEGHLDESLKIFKEQLNSTSKISDNDLYSLKANYALALWKNGELDRAIA + IYEEIFPNYKSTNVYGSLGYLYILKGNVEKALEFNLEAMEYNNTGAVILDNLGQTYYM + MGEYTKAEEIFKKLMALGPKFPEAYYDYALVLEKLGEKESCIENLKTALNYKPNFLSG + VTVEQIQEKLNQVEAQ" + gene complement(3746702..3747394) + /locus_tag="Ccel_3210" + CDS complement(3746702..3747394) + /locus_tag="Ccel_3210" + /inference="protein motif:PFAM:PF00657" + /note="PFAM: lipolytic protein G-D-S-L family; + KEGG: lin:lin0634 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="lipolytic protein G-D-S-L family" + /protein_id="ACL77500.1" + /db_xref="InterPro:IPR001087" + /translation="MSNLTKKNIIVWGDSILKGIILDEKDGKYKVMKDNSISNFAQIT + GFNVKNNAYFGMTSTKALNRISKSIDKLITGKENIVIIEFGGNDCDFNWSEVAENPDL + VHQPKTSIESFKNTLQNMVEMFRKKDITPVLMNLPPLEPERYFNWISKGLNKENILHW + LGDVARIYRWQEAYNNAVEWVSRQMDCKMIDIRESFLLSRDYSSKICADGIHPNEKGH + KKILESMLQFGF" + gene 3747590..3748186 + /locus_tag="Ccel_3211" + CDS 3747590..3748186 + /locus_tag="Ccel_3211" + /inference="protein motif:PFAM:PF08876" + /note="PFAM: Domain of unknown function DUF1836; + KEGG: spd:SPD_1294 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Domain of unknown function DUF1836" + /protein_id="ACL77501.1" + /db_xref="InterPro:IPR014975" + /translation="MDNSKLGNIKKELVDLSAALGSYKTEGWNQFPRIDLYMDQVITY + LEKLLNIFGNTSDSSKTITSSMVNNYVKEGYLKRPVNKKYDRVHLVSLYIMSMLKPIL + PIPLIAGSLNNFNNEEEYQYFYSALTGLQNEAFSSVSQKLLNLIDNLDEDDCETSLRL + FALQLSSEANAHRIAAEKILSLLNENEASNKNDKNKNK" + gene complement(3748193..3748816) + /locus_tag="Ccel_3212" + CDS complement(3748193..3748816) + /locus_tag="Ccel_3212" + /inference="protein motif:PFAM:PF02659" + /note="PFAM: protein of unknown function DUF204; + KEGG: cac:CAC0130 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF204" + /protein_id="ACL77502.1" + /db_xref="InterPro:IPR003810" + /translation="MGVILSVFLLCLAPNLDNMAIGLAYGVRKIKVPFKSNISIALFS + GIATLLSSLLGNILTNYIPGYLGKTIGGSIVIIMGLFTIIGYLKSRKKTKKAYGNGIQ + YIDDIKAVMDDPGIADRDYSGDISLKESILLGIALASNCIGTGFGAGIYGINAFVLSG + AVIVFSLITISVGAIIGRRYASKFLGEKATIISGMLLLVIGLYQIIA" + gene 3749326..3750792 + /locus_tag="Ccel_3213" + CDS 3749326..3750792 + /locus_tag="Ccel_3213" + /inference="protein motif:TFAM:TIGR00564" + /note="TIGRFAM: anthranilate synthase component I; + PFAM: Anthranilate synthase component I domain protein; + Chorismate binding-like; + KEGG: msi:Msm_1146 anthranilate/para-aminobenzoate + synthase component I, TrpE" + /codon_start=1 + /transl_table=11 + /product="anthranilate synthase component I" + /protein_id="ACL77503.1" + /db_xref="InterPro:IPR005256" + /db_xref="InterPro:IPR005801" + /db_xref="InterPro:IPR006805" + /db_xref="InterPro:IPR015890" + /translation="MYKPSLEEAKQLSAGYTIIPVSCEIFSDIKTPIAVLQSLRAVSS + RYYLLESVENGEKWGRYSFLGFDPVIELSCKDGNLEIKGEYSKKVFTNDPNSYIREIL + NEYRSPKLSFLPPFTGGFVGYFAYDYIKYSERTLKLDGIDDANFNDVDLMLFDKVIAF + DHFKQKIIVIVNIKTDNLESNYGKAIKEIERTVNLIKQEIPAEKPVSKLLSPFTPNFT + MEQYAEIVEKVKHYIFEGDIFQAVPSNRQTADFEGSLLDAYRTLRTTNPSPYMFFVKY + DDLEIAGTSPETLIKLENGNLSTFPIAGTRPRGETEEKDRELIENLLSDEKELSEHNM + LVDLGRNDLGRISEFGTVEVKDYLSIKKFSHVIHIESKVTGELRKDMDQLDAITAILP + AGTLSGAPKIRACQIINEVEGHRRGIYGGTIGYIDFTGNMDTCIAIRTAILKDKKVYV + QSGGGIVADSVPETEYMETVNKARAVISALEMSERGID" + gene 3750792..3751373 + /locus_tag="Ccel_3214" + CDS 3750792..3751373 + /locus_tag="Ccel_3214" + /inference="protein motif:TFAM:TIGR00566" + /note="TIGRFAM: glutamine amidotransferase of anthranilate + synthase; + PFAM: glutamine amidotransferase class-I; + KEGG: rsd:TGRD_117 anthranilate synthase glutamine + amidotransferase component" + /codon_start=1 + /transl_table=11 + /product="glutamine amidotransferase of anthranilate + synthase" + /protein_id="ACL77504.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR001317" + /db_xref="InterPro:IPR006220" + /db_xref="InterPro:IPR006221" + /db_xref="InterPro:IPR011702" + /translation="MILLIDNYDSFSYNLYQLIGTINRDIRVIRNDEITIEEIETLNP + SHIILSPGPGRPSDAGICEAVIKHFHKAKPILGVCLGHQAICEAFGATVTYAKVLMHG + KKSLIHIANGSAVFRGLPPIIEGARYHSLSAVRSTLPDELLVIGEDDSGEVMGIKHRD + YDVYGLQFHPESVLTPNGIKILDNFLRIGGEAN" + gene 3751370..3752395 + /locus_tag="Ccel_3215" + CDS 3751370..3752395 + /locus_tag="Ccel_3215" + /inference="protein motif:TFAM:TIGR01245" + /note="TIGRFAM: anthranilate phosphoribosyltransferase; + PFAM: glycosyl transferase family 3; Glycosyl transferase, + family 3-like; + KEGG: rsd:TGRD_118 anthranilate phosphoribosyltransferase" + /codon_start=1 + /transl_table=11 + /product="anthranilate phosphoribosyltransferase" + /protein_id="ACL77505.1" + /db_xref="InterPro:IPR000312" + /db_xref="InterPro:IPR005940" + /db_xref="InterPro:IPR017459" + /translation="MIQEAIYQVINKQDLDLDKTIQVMEEIMEGRATNAQIGSFLTAM + RMKGETIDEITACATVMRQKCKRIHPEKDVLDIVGTGGDEANTFNISTVSSFVVSAGG + VPVAKHGGRSVSSKCGSADLLEALGINIALSAEQSAEILQKIGMCFMFAPTYHASMKY + AAPVRKELSVRTIFNILGPLANPAGANMQLLGVYDENLVEPLARVLLNLGVKRAMVVH + GHDGLDEVTLCNTTTICEVSNGNINSFFLSPEQLGFSRCLLKELVGGDPKKNASIALD + ILNGSKGPKRDIVVLNSALCLYMSYNQITLRDCVKMAEQLIDSGAAKAQLNKFIELSN + SFNQEVK" + gene 3752395..3753177 + /locus_tag="Ccel_3216" + CDS 3752395..3753177 + /locus_tag="Ccel_3216" + /inference="protein motif:PFAM:PF00218" + /note="PFAM: Indole-3-glycerol phosphate synthase; + KEGG: rsd:TGRD_119 indole-3-glycerol phosphate synthase" + /codon_start=1 + /transl_table=11 + /product="Indole-3-glycerol phosphate synthase" + /protein_id="ACL77506.1" + /db_xref="InterPro:IPR001468" + /db_xref="InterPro:IPR013798" + /translation="MILDKIAASTKIRVENLKKEVSFSFVKSEASKLVNKSPFAFEKA + VKDGELTFICEIKKASPSKGLISENFPYIDIAKDYEAAGAGAISVLTEPEFFLGSDQY + LKDVKKTVSIPVLRKDFTIDPYQIYEAALIGADCVLLICALLDTDTLKEYIKIADGLG + LSCLVEAHDENEVKSAIEAGSRIVGVNNRNLKTFEVDITNSIRLRELVPSDISFVSES + GIRTAQDISALRRIGASAVLIGETLMRSGDTGAELAKLRGSA" + gene 3753207..3753824 + /locus_tag="Ccel_3217" + CDS 3753207..3753824 + /locus_tag="Ccel_3217" + /inference="protein motif:PFAM:PF00697" + /note="PFAM: N-(5'phosphoribosyl)anthranilate isomerase + (PRAI); + KEGG: rsd:TGRD_120 phosphoribosylanthranilate isomerase" + /codon_start=1 + /transl_table=11 + /product="N-(5'phosphoribosyl)anthranilate isomerase + (PRAI)" + /protein_id="ACL77507.1" + /db_xref="InterPro:IPR001240" + /translation="MSVKIKICGLTRTQDIEYVNEALPDYVGFVFAKSKRQVTPETAE + QLRKLLDSRIAVVGVFVNEDIDRITSLCKNGIIDIIQLHGDESDEYIESLRQNIDNLI + IKAIRVKDSESVKASCSLPCDYLLFDTFSGNDYGGTGKAFDWKLISDIDKPFFLAGGI + SIDNAVTAIKNMSPYCLDISSGVETDSVKDRNKILNIVNLARSVK" + gene 3753825..3755009 + /locus_tag="Ccel_3218" + CDS 3753825..3755009 + /locus_tag="Ccel_3218" + /inference="protein motif:TFAM:TIGR00263" + /note="TIGRFAM: tryptophan synthase, beta subunit; + PFAM: Pyridoxal-5'-phosphate-dependent protein beta + subunit; + KEGG: cth:Cthe_1412 tryptophan synthase subunit beta" + /codon_start=1 + /transl_table=11 + /product="tryptophan synthase, beta subunit" + /protein_id="ACL77508.1" + /db_xref="InterPro:IPR001926" + /db_xref="InterPro:IPR006653" + /db_xref="InterPro:IPR006654" + /translation="MIKGRYGKHGGQYIPEILMNTINELEESYNYYRNDFDFNRELNT + LLKEYAGRPSLLYFAKKMTEDLGGAKIYLKREDLNHTGSHKINNVLGQVLLAKKMGKK + RVIAETGAGQHGVATATAAALMGLDCEIFMGLEDTKRQALNVFRMELLGAKVHPVTSG + TQTLKDAVNETFREWASRMDDTAYVLGSVMGPHPFPTIVRDFQSVIGKEVREQMLEKE + GRLPDVAMACVGGGSNAMGLFYDFIGDKSVELIGCEAAGKGVDTELHAATIAKGQLGI + FHGMKSYFCQDEYGQIAPVYSISAGLDYPGIGPEHANLHDTSRAKYVPITDAEAVTAF + EYLSRTEGIIPAIESSHAVAHAMKIAPKMENDKIIVICLSGRGDKDVAAIAKYMGVNI + DE" + gene 3755002..3755772 + /locus_tag="Ccel_3219" + CDS 3755002..3755772 + /locus_tag="Ccel_3219" + /inference="protein motif:TFAM:TIGR00262" + /note="TIGRFAM: tryptophan synthase, alpha subunit; + PFAM: tryptophan synthase alpha chain; + KEGG: msi:Msm_1141 tryptophan synthase, alpha subunit, + TrpA" + /codon_start=1 + /transl_table=11 + /product="tryptophan synthase, alpha subunit" + /protein_id="ACL77509.1" + /db_xref="InterPro:IPR002028" + /translation="MSKISNAFKNGKAFIAFLTAGDPSLEKTEEFVLEMVKAGADLIE + IGIPFSDPIAEGEVIQRANLRALSTGTTMDKVFDTVKRIRQKTQVPLVFLTYLNPVFT + YGYDHFFRECSEHGVDGVIIPDIPFEEKGELMPFSDKYNVDIISLIAPTSEERISKIA + SASKGFVYCVSSKGVTGVRNEIKTDLQSIVSSVRSATKVPVAVGFGISTPQQASEIVK + YADGIIVGSAIVKIIEQNGNNAAAPLYDYVLNMKKYII" + gene complement(3755906..3756823) + /locus_tag="Ccel_3220" + CDS complement(3755906..3756823) + /locus_tag="Ccel_3220" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: cac:CAC3378 aldo/keto reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL77510.1" + /db_xref="InterPro:IPR000209" + /db_xref="InterPro:IPR001395" + /translation="MRRISIGNGALTASEISLGCMRISEMTKNDAANLINTALEEGID + FFDHADIYGGGKSEEVFAQAVDMRSSIREKFVIQTKCGIRQGYFDFSKEHILEAVDGS + LKRLQTDYIDVLLLHRPDALVEPEEVAEAFSILQSNGKVRNFGVSNQNPMQIELLKKY + LNQKIIVNQLQLSITNTGMIDAGINVNMKVEGSVDRDGSILDYCRLNDITIQPWSPFQ + FGFFEGVFLNNDKFPELNKKIDELAEEKGVANTAIAIAWLLRHPAKMQPIVGTTNAKR + LKDICKASTIELTRQEWYEIYLAAGNKLP" + gene complement(3757000..3758295) + /locus_tag="Ccel_3221" + CDS complement(3757000..3758295) + /locus_tag="Ccel_3221" + /inference="protein motif:PFAM:PF00349" + /note="PFAM: hexokinase; + KEGG: hmo:HM1_0763 hexokinase, putative" + /codon_start=1 + /transl_table=11 + /product="hexokinase" + /protein_id="ACL77511.1" + /db_xref="InterPro:IPR001312" + /translation="MGSKLEIVQDVINAFEVNKESMLRTAMLFKETMEKSLNGEKTCL + KMLPSYIGKPTGKEQGTFMTIDMGGTNFRCTKYKINNGNFEKVGEIKQKLINKEKNYD + LTKSDSDEKQLFGFMAECIGELLEPEESLYLGNTFSFPCRQEGINDAYLIQWTKEITT + SGVVGQNINKLLEQSLKEKNINVKPVAILNDTVGTLLVAMYSYQTADIGSIMGTGHNT + CYLENNHPLNGQKMIVNIESGNYNVGLPVTKYDEIIDKNSQIPGAQLLEKMVSGYYMG + SLLKEVCKDLYKNNALFTNEDVDIDAFFNQNFNALMVENFILYPSNTKEQYKCSIEDA + EIVKRVSEAILKRTVRLVAVSHMGILFHQENSGTSVNNEHVIAIDGTIYEKMPNAPQL + MKEAFREALGDDASNIEIRLVKDGSGLGAAIAAAFAVTQ" + gene complement(3758384..3759229) + /locus_tag="Ccel_3222" + CDS complement(3758384..3759229) + /locus_tag="Ccel_3222" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: tte:TTE1902 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77512.1" + /translation="MFYTDGSNAKDFINNDIELLKNEYEEYFNSLMQTELSPVHILLC + SSLTHQKNNAYEKILLIYEDRIVVLKKVNQSITKYTIRYSDINYIVLEGLPRPVGLNI + HYNEEDREEVFFDPFAEEIMDRLVKELRKLIIQENSFKEVFDLCEQNIDESWYMGKVL + TAEALFKNQTSVCELYQKRVYDRYWSIFRKIITQTHYSIVSNNEIIVFKENYEPMDDK + DICGDLIFVPLNSIKRVSLESIEKGMVLKYMFFNAKTFELFYQSEKTDELLKAMSFIN + GVIQA" + gene complement(3759326..3760099) + /locus_tag="Ccel_3223" + CDS complement(3759326..3760099) + /locus_tag="Ccel_3223" + /inference="protein motif:PFAM:PF01520" + /note="PFAM: cell wall hydrolase/autolysin; + KEGG: esi:Exig_1130 cell wall hydrolase/autolysin" + /codon_start=1 + /transl_table=11 + /product="cell wall hydrolase/autolysin" + /protein_id="ACL77513.1" + /db_xref="InterPro:IPR002508" + /translation="MKNMKIYAVALAFSLILGYGVANHVNRFQGYAYQKDRVTQSVSS + TLLKGTTVCIDAGHGKTSRLNTETEPIAPGAKIRKAATASGTRGVATGVSEASLNLTV + AKKLKESLLQKGAKVVMIRETEECGLTNVERAKLWNSSEVDLTIRIHGNGINDSSISG + VLMMVPGNKYINDTEILRNSRKAGELVLEGVLEHTKAKSRGIEETSELTGFNWSKVPV + ILLEMGFMTNPEEDRLLNTDEYQNKMVAGITEGLIKYVN" + gene complement(3760282..3761355) + /locus_tag="Ccel_3224" + CDS complement(3760282..3761355) + /locus_tag="Ccel_3224" + /inference="protein motif:PFAM:PF08240" + /note="PFAM: Alcohol dehydrogenase zinc-binding domain + protein; Alcohol dehydrogenase GroES domain protein; + KEGG: csa:Csal_0359 alcohol dehydrogenase GroES-like + protein" + /codon_start=1 + /transl_table=11 + /product="Alcohol dehydrogenase GroES domain protein" + /protein_id="ACL77514.1" + /db_xref="InterPro:IPR013149" + /db_xref="InterPro:IPR013154" + /translation="MSIPKTMKALVAYGKGDYRFVKEYPTPVCGPDDIVIKTEGCGIC + AGDLKCMDGAGRFWGNNNQESWVKPPFIPGHEFLGIIVEMGKNVKGYEVGDRVTADQI + VPCGECKFCKTGRYWMCQPHATFGFQKDNNGGMAEYVRYPKTAVIHKVPKDLSLEKAL + LIEPYACSKHCVDRAQITNEDVVVISGAGTLGLGMITYARMKNPAKLIVLDMMDSRLE + KAKEFGADIVFNPGREDVVKNIMDLTDGYGCDIYIEATGHPSSVIQGLEMIRKLGRFV + EFSVFGSETTVDWSIIGDGKELDVLGAHLSPYCYPFVIEHITKGTLKTDGIIGRSFKL + EEWEKAFEYATGKHGDFKVVFTF" + gene complement(3761409..3762344) + /locus_tag="Ccel_3225" + CDS complement(3761409..3762344) + /locus_tag="Ccel_3225" + /inference="protein motif:TFAM:TIGR02152" + /note="TIGRFAM: ribokinase; + PFAM: PfkB domain protein; + KEGG: pae:PA1950 ribokinase" + /codon_start=1 + /transl_table=11 + /product="ribokinase" + /protein_id="ACL77515.1" + /db_xref="InterPro:IPR002139" + /db_xref="InterPro:IPR002173" + /db_xref="InterPro:IPR011611" + /db_xref="InterPro:IPR011877" + /translation="MMGKILVIGSLNMDLVVNVKHMPQIGETLLADRLEFIPGGKGAN + QAYALGKLGADVTMLGAVGNDSYGDIQIDGLKAVGVDTTHIARINGVNTGIALINVNE + HGDNSIIVVQGANKYVSKEYIDRNLKVIEESDIVIFQLEIPIETVTYAAKKAKELGKT + VILDPAPAPDDLPAELLSNVDIIKPNETELVKLTGIEEVDSCISKAVDSIKKQGVKTV + IVTLGGKGSFVSAQNDVIKYISTQDVKVIDTTAAGDSFIASMALYLSKGKDIISAVEF + ANNVASISVTRKGAQSSMPSMEEVEKYISEMGSAK" + gene complement(3762730..3764928) + /locus_tag="Ccel_3226" + CDS complement(3762730..3764928) + /locus_tag="Ccel_3226" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: cth:Cthe_1488 methyl-accepting chemotaxis sensory + transducer" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL77516.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /translation="MKMNGIGKKILRFLSLAVSAVISTVKKLPKMKPTGKVGGSVGSP + PSGKSFLLRKIKIKNRLIITFNLLLVVTILITGISSYTSSTNTIDNTVKTYSLETIKQ + TGVVLNNQIKNLESYINDIGMNASVQNTLNRYGTTVDQFEEMTREMELKSILTNKFTV + SGGVINCTLMYGENFQRTQVYTSNNLLVNTEKAAKQAENRLKWTDIEVNDGTKAETYT + GIISNIKSLTLGKDLAKMVIIPKINFLADSYKDMNTGKDDNGKGFPILIVDSKGKIIS + SRLEDKYPVNKSNDDSKKLAENIAKSVKDNGAGHIDLKVGGSNSLVTYTKIGNNDWYL + ASIVPYSHLNEEANSLKVRTIIMGIICLLIAILLCLVIARSVSTPLNKLTAAMKRAKD + GDLTGTIIDNENDEISEVSFNFNEMITNINKLVSSVRDSSQSVFNSAQKIETASEAAY + SSSEQVALTIEQIAKGSTDQAEEINESVSHMDKLSQGIVYVEEDVAKVTTIAQEINGL + SKTAADTIEALNTKSGQVSNTTAKVSENINDLSLSMREIQKILKMMVNISEQTNLLSL + NAAIEAARAGDAGKGFAVVANEVKKLADQSKEFTGSISSIIANIERKTNDTVQEVNNS + NEVVSEQISAVKDTQELFKTVFSAMDEVIENIGRTGKSVENIMVSKEKVMESMENISA + VAEESAATTEEISASTQEQMASAEDLANHAKTLNDLSVDLKREISKFKTE" + gene complement(3765304..3765996) + /locus_tag="Ccel_3227" + CDS complement(3765304..3765996) + /locus_tag="Ccel_3227" + /inference="protein motif:PFAM:PF04607" + /note="PFAM: RelA/SpoT domain protein; + KEGG: cbe:Cbei_2333 RelA/SpoT domain protein" + /codon_start=1 + /transl_table=11 + /product="RelA/SpoT domain protein" + /protein_id="ACL77517.1" + /db_xref="InterPro:IPR007685" + /translation="MIMKKTATISSFNGMEQLFTGEDINSLKRSFFEMQHLYQSAIRE + ISTKLEILDDEFQVIHKRNPIHHMQSRIKSIKSIIEKLNRKDYEISLESAKANLNDIA + GIRVVCYYIDDIYMIAKMLTQQDDIVLLRVTDYIQNPKENGYRSLHLVVSVPVFYSDR + KEIVPVEIQIRTMAMDFWASLEHQLRYKTNDTVPLSVAKELQECADTIAKTDRKMQSI + YKSIEEIKKGNL" + gene 3766351..3767313 + /locus_tag="Ccel_3228" + CDS 3766351..3767313 + /locus_tag="Ccel_3228" + /inference="similar to AA sequence:KEGG:EF1536" + /note="KEGG: efa:EF1536 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77518.1" + /db_xref="InterPro:IPR003089" + /translation="MKNSIKVCVVLILIAFIAVMVAGFYFYDISVASSKKTLLVQDML + LKKSVIVNTEVELNEDSSDDADWLSGQPYETVDIVSHDGLKLKGYYLEAQSPTAKTSI + LAHGYSSQGLWMGLYAKLYYTLGYNVLMPDSRGHGNSEGNYVGFGWADRKDYLNWIDY + VIRKTGPDSQIVLHGVSMGGATVLMTGGESLPSNVKAIVSDCAYTSVKDELSYQLSRM + YNLPYFPLLNATSLITKIKAGYTFGEASALKQVKKSKTPTLFIHGGNDEFVPTGMVNK + LFEASNSEKELYIVPGAGHGAALTADPEEYASKVKDFTEKYINK" + gene 3767645..3769132 + /locus_tag="Ccel_3229" + CDS 3767645..3769132 + /locus_tag="Ccel_3229" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cbe:Cbei_3089 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77519.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MSLINVTNLTFSYDGSYDNIFENVSFQIDTDWKLGFTGRNGRGK + TTFLNLLLGKYEYRGSISSKVPFEYFPYEVKNKEANVIDIIEEAFPNYVLWEVMRELS + LLEVDDDVLYRPFDTLSNGEQTKVLLAALFLKENSFLLIDEPTNHLDINARMVVSDYL + RLKKGFILVSHDRAFLDNCIDHILSINKTGIEIQKGNFSSWFENKEMQDNYERTENDR + LKKDIRRLSEAAKRASDWSNKAEAKKIGFDPTQTEKSIGRRPYQGAKAKKMMSRSKSI + KERQQSAIEDKSKLLKNIESSEKLKISQLNFHTNRLVELENVSIFYSDKKACDNVTLT + IEQGDRIALMGRNGSGKSSIIKLICGEDIDYSGIIRKPNQLKISYVSQNTAHLYGNLS + DYARANEIDESLFKAILRKLDFSRIQFEKDISAFSGGQKKKVLIAKSLCDKAHLHIWD + EPLNFIDVISRMQIEELLLEHRPTILFVEHDIEFCNNIATKIVQL" + gene 3769339..3769929 + /locus_tag="Ccel_3230" + CDS 3769339..3769929 + /locus_tag="Ccel_3230" + /inference="protein motif:PFAM:PF03167" + /note="PFAM: Uracil-DNA glycosylase superfamily; + KEGG: dsy:DSY3733 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Uracil-DNA glycosylase superfamily" + /protein_id="ACL77520.1" + /db_xref="InterPro:IPR002345" + /db_xref="InterPro:IPR005122" + /translation="MKQDFSPVIWTEEKVPEKAVNCQKCELHCQRSRIIWGEGNPKAP + ITVLLDNPGAREDKCGVEFICGTRETLQRAVFEAGLKMEDLYVTYVLKCRPVRRYDKE + KARATCMEYLIEQIDRQKPMLVFCLGNIAAQWFFGEKDTEVKNIRGFWHSVRGYTTSA + TYHPLAVRRRPNLYPTFVKDWKMLAERYFNEKTLIN" + gene complement(3769904..3770458) + /locus_tag="Ccel_3231" + CDS complement(3769904..3770458) + /locus_tag="Ccel_3231" + /inference="protein motif:PFAM:PF02632" + /note="PFAM: BioY protein; + KEGG: cbe:Cbei_1913 BioY protein" + /codon_start=1 + /transl_table=11 + /product="BioY protein" + /protein_id="ACL77521.1" + /db_xref="InterPro:IPR003784" + /translation="MIKSTNIRQISVIGVITAVICILGPLSIPIGVVPISFTNLAIYF + ALYTLGMKKGTLSYIVYMLIGLVGIPVFSGFSGGLSKLVGPTGGYIIGFIFMAVIGGY + FIDRFWDKWYLSLIGMVVGTAVCYLFGTVWLAYQAHISLGAAFSAGVIPFIPGDMVKI + LVAAFVGPQIRRGLIKANLLKFSH" + gene complement(3770592..3771866) + /locus_tag="Ccel_3232" + CDS complement(3770592..3771866) + /locus_tag="Ccel_3232" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77522.1" + /translation="MKKLAYLLSVIVLIMGLNVSTITVNAAETIQCVTITDKGSHYEV + VLNFKGEKSHRKIGQEYGSTILKLVPQYEAIVDSYLAEITSSNEAYDLMMQRVNEIIP + QVDKNYVDEIKGIASNFTGQDQDIRGDGKLSAGEMFLMNLCPDVVRPSQCCAVGVYGK + RSQNNDNMGMRILDWYAGSENQLAGIQAVVTFKNSKKSICSIGYLGYMACISAFSDDK + VFGAILDSGTGEPYSSEGKRSYPFDLRHALENYTTLNGVAAYLKSPVRNYTYGHLIFL + SDAKGTKVLENNISSKKNSLREVRTEKSELNEGIIWDIDNSVGCVNSFMLKGNLDNHS + NNPSNTNRLYSMKKVLKEQGEKFTFDNMKAVASYYQGEEPGLHKDGDLYNTRTQQIIV + FEPSKSRYEVFFRPKSGILPKVPVFDEIPVLF" + gene 3772001..3772606 + /locus_tag="Ccel_3233" + CDS 3772001..3772606 + /locus_tag="Ccel_3233" + /inference="protein motif:PFAM:PF04140" + /note="PFAM: Isoprenylcysteine carboxyl methyltransferase; + KEGG: ckl:CKL_0584 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Isoprenylcysteine carboxyl methyltransferase" + /protein_id="ACL77523.1" + /db_xref="InterPro:IPR007269" + /translation="MNITDAISLFMLIIFGASYILKLILLKQNSRIKANVLAKGDKEF + SIFFTELSVRVSSSLWLLTWVSEIIFHNKISYFCGYIFKNIYITYAGIIITALGVVVF + ILATVFMKTSWRVGIDKSTKTALITNGIYKFSRNPAFVGFNLMFMGVFFTYSNVITLI + ILILNMLAFHLLILQEERHLLSVFGKEYERYKRNVPRYFIV" + gene 3772899..3774935 + /locus_tag="Ccel_3234" + CDS 3772899..3774935 + /locus_tag="Ccel_3234" + /inference="protein motif:PFAM:PF00015" + /note="PFAM: histidine kinase HAMP region domain protein; + chemotaxis sensory transducer; + KEGG: nth:Nther_2579 methyl-accepting chemotaxis sensory + transducer with cache sensor" + /codon_start=1 + /transl_table=11 + /product="methyl-accepting chemotaxis sensory transducer" + /protein_id="ACL77524.1" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR004089" + /translation="MRSKGISRFKGLSWRIFTVSILCTLIPLLVSLFITSYFSQKYLE + DSSSNSLLNIAVEKTNQLELAFSDLEKQAQSIAMQPCIVDPLSEAIINSSNPSGTDVQ + KISDSLQNNFNLSNGLFENIFLMYKNKDIADGIGGKSVGWENETIGSTDKLLIREATA + SPTTGRPVITIVTPVKNNDKHLGTIGMAIELNNVSKNIIDSNSSKNDFKTLILNSEGL + VISSIDEKQVLSLNFQDKALGLQDFYNTIKSNESGIGYFTMDGNKFISAYSSSSKYGM + YILTYKPVTAYMEMINNLKLILFGVILISILLASIVIYFSSRKITKPILVAATQAELL + ANGDFTVNIPEHSQKRKDELGKLAISFSTMIQNFKTIITQITEASDKVAASSQEFYAS + GEQVGKAAEDVGNTILEISAGAEEQSSMIDSALSNLRNLLNQINVVNTSTYNMQETTV + HMIGDIAIGSKTAAESIDSINNLKADTEGVSKVIFNLGNTSNQIGQIIELISGIAEQT + NLLALNAAIEAARAGEAGRGFSVVADEIRKLAEESADASGRIAKLIVEVRSGVDTAVN + KMDSSIKSVNSSVKAIQENGDTFTLISKQAEQLKDIVANVTQSVEIMTESSREFEHTM + QEINQTSQEFAANSEGVSAASEEQIALTEEIVSSSKAMAEMSEELSNLIKNFKL" + gene complement(3775011..3775889) + /locus_tag="Ccel_3235" + CDS complement(3775011..3775889) + /locus_tag="Ccel_3235" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dsy:DSY4338 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77525.1" + /translation="MKLRKHIVFVFIIVFFISNYNTVNADTGPKPTLEITVVNPQDSS + YYLDLLGKDGEYLNATDGNKEYDNMHDQPIYKYNKDGWKAIHMRTWLLNGKLTGDPVE + KDTNGKVLTMRHSFGYVGVPEVFKIIIQKSDGTIQVSDIIHNTYFNAYVKYDMKTNKV + LSVRGNILQGGIKFGDEFFKYYMIRLLVTLILEVFFAIPFFYLKAKRLLIIVGVNIIT + QTLLTFGMIFDYPILHKMPFNMGYLTVLAIGEVLVFLAEYLAYIKLFGKADKREIAAY + TFVANAASMIAGFVIL" + gene 3776196..3776570 + /locus_tag="Ccel_3236" + CDS 3776196..3776570 + /locus_tag="Ccel_3236" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77526.1" + /translation="MKTLSGALLISTGCIMVLVLKILQILFINCFSYQDLSLVWFAIF + MSMILGAFLIVFDNISTFQYIKKLCTLKFGLALLTGSLISILFGLKRLPIPFMQVLSL + VLVFSIIIIIINLLKALKTRKR" + gene complement(3776653..3777639) + /locus_tag="Ccel_3237" + CDS complement(3776653..3777639) + /locus_tag="Ccel_3237" + /inference="protein motif:TFAM:TIGR01179" + /note="TIGRFAM: UDP-glucose 4-epimerase; + PFAM: NAD-dependent epimerase/dehydratase; short-chain + dehydrogenase/reductase SDR; 3-beta hydroxysteroid + dehydrogenase/isomerase; polysaccharide biosynthesis + protein CapD; dTDP-4-dehydrorhamnose reductase; Male + sterility domain; + KEGG: cth:Cthe_0186 UDP-galactose 4-epimerase" + /codon_start=1 + /transl_table=11 + /product="UDP-glucose 4-epimerase" + /protein_id="ACL77527.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR002225" + /db_xref="InterPro:IPR003869" + /db_xref="InterPro:IPR005886" + /db_xref="InterPro:IPR005913" + /db_xref="InterPro:IPR013120" + /translation="MAVLVTGGAGYIGSHTVAELLDAKEEVIVLDNLEKGHREAVLGG + KFIQADLRNIDEIRKVLKENDIEAVIHFAAYIEVGESVINPLKYYNNNVIASLNLLTA + MQEAGVNKIVFSSTAATYGIPEQIPIKESDRTAPINPYGETKLTVEKMLKWADDAYGI + KYAVLRYFNACGAHISGKIGEAHSPESHLIPIILQVAQGKRDEIKIFGSDYNTKDGTC + VRDYIHVSDLSQAHVLALKNLRKGAESNTFNLGNGTGFSNKEVVEVARAVTGKTIKAT + DAPRRPGDPDILIASAEKAINILGWKPKYNDLNKIVETAWKWHSTHPNGYNG" + gene complement(3777685..3778878) + /locus_tag="Ccel_3238" + CDS complement(3777685..3778878) + /locus_tag="Ccel_3238" + /inference="protein motif:TFAM:TIGR00131" + /note="TIGRFAM: galactokinase; + PFAM: GHMP kinase; GHMP kinase domain protein; + KEGG: csc:Csac_1511 galactokinase" + /codon_start=1 + /transl_table=11 + /product="galactokinase" + /protein_id="ACL77528.1" + /db_xref="InterPro:IPR000705" + /db_xref="InterPro:IPR006162" + /db_xref="InterPro:IPR006203" + /db_xref="InterPro:IPR006204" + /db_xref="InterPro:IPR006206" + /db_xref="InterPro:IPR013750" + /translation="MQKNYDELKKKFCRIYGGSEEDLRIFSGPGRVNLIGEHIDYCGG + FVFPAALSLDSTVIARINNDNTLRVAATDLPDRVEVELDKLESAKSLKWGNYQAGVAF + MLQDAGYRLVGVDMLFHDTVPLGSGLSSSAAIELATAVTLVTLSNEVYGITKPIDMVE + MAVLGQRTENEFCGVSCGIMDQFASAMGKKDHAILLDCGTLEYKYLPLKLDGYKIVLG + NTKKKRALGESKYNERVRECAEGLKILQKYLPNKRNLCDITVSEFEQYKSMIEDEVIK + KRVTHVISENDRVLRAAEALKRNDLEELGRLLVEANDSIRDLYEVTGKELDTMTAEAM + KVEGVLGARMTGAGFGGCTVNIVPEDKVDLFIQQVGENYKEQTGITPEFYVSEISDGA + REIKI" + gene complement(3778915..3779102) + /locus_tag="Ccel_3239" + /pseudo + gene complement(3779339..3785560) + /locus_tag="Ccel_3240" + CDS complement(3779339..3785560) + /locus_tag="Ccel_3240" + /inference="protein motif:PFAM:PF03442" + /note="PFAM: Ricin B lectin; S-layer domain protein; + Carbohydrate binding family 6; protein of unknown function + DUF291; glycoside hydrolase family 43; + KEGG: hmo:HM1_0142 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF291" + /protein_id="ACL77529.1" + /db_xref="InterPro:IPR000772" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR005084" + /db_xref="InterPro:IPR005102" + /db_xref="InterPro:IPR006710" + /translation="MRKKSLVMLSLAIVLSLLLTSISYADVTSSYQNPLMRGADPTIA + RAADGFYYSCFAVDNDIYLKKADTILGVGTAKSRLAWDKPADFGYVWGPYIYRLDGKW + YIYFTSAPENSFGYGHPSSYVLENTSPDPFEGTWELKGVSANADEDGQVTDKPGLLNT + QGYGLACGVVTMGGKTYFTYTKYFYYPDPNDPTKEKFDECPTIVEMENPWTLKGTEGT + LARPVYDWEKQGDSINEGAAVVERNGKVYFAYSASSFMNDNYCVGVSTADAQSDLLQE + SNWTKNPEPALAKSPENSSFGPGSPLFVKSEDGTEDWLIYHGGPVGGQTGSNRWVRAQ + RINWNDDGSINLGIPSNPGTVLDRPSGEEKSETYEAEDASFAGVTRTILSDSSKASGS + GVMKYDNSSNGYVEFTVDANMPGSYSLNFRYNNSTGSNITMSLGVNQNSSRELSFEPN + GSNSTNYDLLRVHNVQLNAGHNKIRLSSSEANGLVLDAMIIKKSVLYEAENAALSGGA + LVSTEHSGYSGTGFVGGMYTEGTSAEFTVDAPYAGNYSVNLRYCNGFSNIDKTLSMYV + NGVKVKQIDLFSFGDWSKWSERYDNIELRAGSNTITYKYDSGDGGNVNLDYITVTEAT + TRHYEAENAVLTGNAQKSTDHTGYTGTGFVGGFWTEGSVEFSVNVETAALYDVKLKYA + LGFPEDRTMSIYLNGSKVKQVTLPSTGGWDTWSEYLETLSLNKGNNTISIKRDSDDSG + DINIDSIHLDRRISWKYQAEDATLLGGAHPVDDHLWYEGTGFAGGFETLYESIQFNVN + VPNTATYTTTLRYSGAQENDITMSLYVNGTKIKQVSLPPTADWDSWGEATETVNLKAG + KNVIEYKRDDGDTGRFNIDSMTIDKYSVGDTDLKNRGIVSGTVYTIKAKHSGKALDVS + GYSSEPGALVDQWTYVGGNNQRWEIIDLGTGYYKIKSAHSGLVLDIVEGSPDMDLCQT + TSSPAETQQWILEKVGGYYKIVNKSNGMVLDVSEESYDNGKKVHLYSYVGKANQLWKI + DVASANELFIPVTGITDVPVTATAGTDLTLFANVLPYNATNKSIEWRVKDAGETGATI + SGNTLSTVGAGTVLVTAVITDGMPDDNAYTQDYIIQINAVNHAPTAKANIPVAAVAAD + DSVSFIASDIAEDEDGDTLTIAEIKTSPDSAMASAILDNGTVTVSGVAPGSTDATLVV + SDGRGGTVEINVPIEVAAAPDVKIDISQSPVKTIFNALTFGLFFNDSIDVSLSSGKTE + IDHFEYQIVGAESPFDSNGTWTTGNSFSVEPDFMGRVYARAVFTDGAVTETYIKALVV + DKTKPEIGAVYDKDNASIAVTVSDISAGIDTITYQVGSGEVKSVNLTPTAEKDITFEY + SFTISSLPEGQYDVVINAIDNSDNAADTKTLNIVNNGVASAEISPVSESFDINVPADV + STTITWNDASSVTDVVYGGNPVTSDSYEVSGDTLTLKSSYLASLGLVNGDTSEFIINF + DRGNPVTFVVSIIDSSDPTPVNRSISVQNDGNGTASANVTSATEGTEVTLTATPNEGY + RFKEWQVIYPTGLAITGNTFTMPNGAVSVKAIFEQNPVVNYTLSVNGSYSNESGAGSY + VEGSTVTINAGSRSNYTFRGWSSGDGVTFANANSTTTTFTMPAKNVTVTASWTYNGSS + PYNGTIPSQPATKDYTADIKVSGASGNSTLPITVDAKTGTARLDTASRNELVANGGIS + VITVPSIPDVDTYSVGIPVPYLSTADWQGSLRVSTNRGSITVPSNMLTGIAEAAGTKA + EITIGKGDKATLTEAAKTAIGDRPLIQLTMYIDGKQMEWNNPNVPVMVTIPYTPSAEE + LANPERIIIWYIDDNGKAVAVPNGHYDPASGTVAFDTTHFSSYAIGYSDVSFNDVTEN + AWYNKAVSFIAARDITAGTGNGYFSPNAKLTRGEFIVMLMKAYEIAPDGKQSSNFEDA + GNKYYTGYLAAAKRLGISEGIGKNMFAPEKQITRQEMFTMLYNALKTMDKLPQGDTGK + SLSSFDDEEMVASWARDAMTLLVETGIVGGNAGQLTPASTTTRSEMAQVLYNLIYKN" + gene complement(3785709..3786821) + /locus_tag="Ccel_3241" + CDS complement(3785709..3786821) + /locus_tag="Ccel_3241" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: psa:PST_0303 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77530.1" + /translation="MDRKAHKQFAELKMGDRLELPAGGYAEKKIFIDRYGFSINILTV + SNGLLIFTVILERGMDIGEIFLGQDKITWERKDEYLLHPDSVNLHENGGWEKGFYAAV + AAIGPEIFGTPDEVRTVHGTGSYSQTDLQSVCILWDKEQICIEGTVPIKGYSAEPVYQ + KHIKIFTRYNSPLIVRKDSTINLTGERQPLDDGYHIQLAGEYAAKGGRYVLPVSRDKM + LLRDSAPAENNPFEIYEFSSSLDPIRCYQYVPEPVSGLEKLIELSDYSDMVQLNGKIT + AEMIVNSEKTGAVYIIRPLESFPRSLIAKRAIDEPMYALEPCKTRPNSLCQKAIDGEL + VYLEPRSQADSWFIIGVVFNNLTIQLLENLIEKAIN" + gene complement(3786892..3787551) + /locus_tag="Ccel_3242" + CDS complement(3786892..3787551) + /locus_tag="Ccel_3242" + /inference="protein motif:TFAM:TIGR01990" + /note="TIGRFAM: HAD-superfamily hydrolase, subfamily IA, + variant 3; HAD-superfamily hydrolase, subfamily IA, + variant 1; beta-phosphoglucomutase; + beta-phosphoglucomutase family hydrolase; + PFAM: Haloacid dehalogenase domain protein hydrolase; + KEGG: pmo:Pmob_0141 beta-phosphoglucomutase" + /codon_start=1 + /transl_table=11 + /product="beta-phosphoglucomutase" + /protein_id="ACL77531.1" + /db_xref="InterPro:IPR005834" + /db_xref="InterPro:IPR006402" + /db_xref="InterPro:IPR006439" + /db_xref="InterPro:IPR010972" + /db_xref="InterPro:IPR010976" + /translation="MKPFKAAIFDLDGVIVDTAKFHFLAWHRLAAELGFEFTEKDNER + QKGVSRMESLEVLLEVGGLLDLSSEKKEELATKKNEWYKEYLYKMTPAEILPGAKDFL + KYLRLRGIRIALASASKNAPIILEKLNITDLFDAIVDGNSVSKAKPNPEVFLKAAEQL + GIAPSDCFVFEDAQAGVEGAKRAGMRVVGIGEPTVLNQAEIVVRGFPDIEPVILLSHI + N" + gene complement(3787580..3789829) + /locus_tag="Ccel_3243" + CDS complement(3787580..3789829) + /locus_tag="Ccel_3243" + /inference="protein motif:PFAM:PF03632" + /note="PFAM: glycoside hydrolase family 65 central + catalytic; glycoside hydrolase family 65 domain protein; + KEGG: tex:Teth514_2202 kojibiose phosphorylase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 65 central catalytic" + /protein_id="ACL77532.1" + /db_xref="InterPro:IPR005195" + /db_xref="InterPro:IPR005196" + /translation="MSKKNQTHVVDNLWCIEENRFNQDTNKHFEGLFTQGNGYMHVRG + SFEEGLRGAAQDEEYMRMPANVTLEQPRHTKSKWGTFIPGIVGKHPLLKEEIINLPYF + LGIDLIIADEELNMEASTIREYKRWLDLRDGCLYRSLIWETEQGIDLKLCYKRFVSME + EKHLCLQQVQIEVLSGEGILDIRCGINPEVRTNGFNHFKEVLTEDNNSEYICTKTITD + GGNSVLMLSGISASENICWSRLTQNQRIFFSGSRLLKAGDCLEIQKVTSVVTDRDLEE + GTLIERGEKYLKYFFKEGWEKIYERHSRAWDSKWLYSDIEITGDDEAQLAIRTYIYHL + IRANSENDSRVAICAKGYAGEAYFGHYFWDTEINMLPFFIHTNPQAARNLLMYRYNTL + EGARKNALENGYEGAKYAWEASVTGEEQCPCWQYADHEIHITADIIYAMYHYVNSTED + IAFVRNFGVDMMVETARYWVQRVDRNKDGYYELLGVMGPDEYLPITRNNAFTNRMVKF + SLEKTADLLQKIKQEDAKGYLEIENRLGLKELEIEKIKEVAEKLILPYDENTDIVPQS + EDFESYADVDFNAIWKDRTKPFGNFISQEKNYRSKALKQADVLELMLLYPDDFTREQL + TNAYDYYEPITTHDSSLSASVHGIVAAWMGRMPEAEKFLKKVMDIDMSEEKKGAAEGI + HIANCGGLWQMIVYGFAGLKSAMWCDEIQLAPHLPDKWTKLEFTLAWHGKRYRITVTK + EKHEITELY" + gene complement(3789864..3790703) + /locus_tag="Ccel_3244" + CDS complement(3789864..3790703) + /locus_tag="Ccel_3244" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: oih:OB0776 sugar ABC transporter permease" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL77533.1" + /db_xref="InterPro:IPR000515" + /translation="MTGLKGLKFVLALLKYIFILTIIVLSIGPFFWVFLSSFKSNAEI + LNYSIGWPKNFGFSNYMMAFKIAPLAQFYLNSVWVAVFGTILNLFILGMSAYVTARFD + FKGKKLLIGVLSLSLLIPGAAMLQPLYLTVNTLGLYDKLIGLIIVYAGFGLPASLYII + SSYFHTIPKEMEESAYLDGAGFIRTFVSIILPISKPGFGTAAVLQFLLCWNEFQFAIT + LTTGNKSRTLPLALYYFKSQFASDYGVMFAATVIVIIPSIIVYVLLQKQVVSGLAAGA + VKG" + gene complement(3790709..3791581) + /locus_tag="Ccel_3245" + CDS complement(3790709..3791581) + /locus_tag="Ccel_3245" + /inference="protein motif:PFAM:PF00528" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; + KEGG: tle:Tlet_1426 binding-protein-dependent transport + systems inner membrane component" + /codon_start=1 + /transl_table=11 + /product="binding-protein-dependent transport systems + inner membrane component" + /protein_id="ACL77534.1" + /db_xref="InterPro:IPR000515" + /translation="MAKNKGYIALFLLPTLVLFLIVYTVSIAILFSTSFTEWSTGTKP + VFIGLKNYIDMFTNDSDFRRSLLNTCIWIFLQSTVHVVIGVLFAIILNMKEFYWKFAR + TVFMIPNIISGAAVGMLFLCILNPEFGAVNSIVRLLGFEDFSQNWFMDHKTSFFSVTM + TWLPYAAIVTILVLAEIAAIPEGIYEAARIDGANEVKINIYIVLPLLRNIIGTCVILS + GTSMLQKLDIIVMTTGGGPGNLTMNLPMYIYKTALMDNNFGYSNAIGSFLVVFGIMLV + LLYRRIFKIGSSEV" + gene complement(3791754..3793085) + /locus_tag="Ccel_3246" + CDS complement(3791754..3793085) + /locus_tag="Ccel_3246" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: tpd:Teth39_1520 extracellular solute-binding + protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL77535.1" + /db_xref="InterPro:IPR006059" + /translation="MKRSAAFLLTAAMVVSLAACGSNGTSDKTAEVSGSTSSKTSVEA + KAPVTIKYPTYKVGTHSSAAMEKEQLKKFNDKFGNGIKVQVEEIPSDTAYNDKMKILA + ASGDLPDVVMGKNGINEILLKGNLATPFNDYLDKDTQWKSEIGDEALAANTRDGKVWS + ISDQKQVIGYFYNKEIFDKAGIKPAETWDDFFANCDKLKAAGFTPLALMTGENAWTTN + LMLSSLVGTNGEAGNKYMNTLHPTNFETPEVINALKKMQIMLQKYTTKDALGAVYANA + ANNFCQGKAAIIANGPWMIGDFSDKSKSPEGFDKKVGVATYPESGAFCSYEVGYMIGS + QTQEAKDAAAEFIKFKTGIEGQSIGLELGNVLPVSEKVQPSEEFKQKYPLFVETIEVG + NNAKLKYQYFDTLVYPSVTDAWKNLYPELAFNKLTAEEMAKKLTEIAAKSK" + gene complement(3793363..3800490) + /locus_tag="Ccel_3247" + CDS complement(3793363..3800490) + /locus_tag="Ccel_3247" + /inference="protein motif:PFAM:PF07554" + /note="PFAM: S-layer domain protein; Ig family protein; + sugar-binding domain protein; + KEGG: swo:Swol_0298 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sugar-binding domain protein" + /protein_id="ACL77536.1" + /db_xref="InterPro:IPR001119" + /db_xref="InterPro:IPR008009" + /db_xref="InterPro:IPR011490" + /translation="MSKKVIMKMVAVVVSVCMLLSTVFQSGIAYAAEDASNLVISESQ + VSGEYKFNLTQVGDIDWLHLKGDGSNGIVQIKKDTTNPSAISFNILPNSVPEGKVSNG + DPDRIANTWSDGMAGYESGTDDTGFAVLLPPADNRGAGTCTENVGWNFSVQAQPVQTT + VIFTLGLWQANVGVNFYMDDVQVDTKNISAGGGALTFKYQVTVPANKVLKVEGIQTDI + LWQDGNSSISSIAVSSAVLVDKEAIQTLYNNVKDIVQGSYTEETWTVFESARTTAQAV + LDDPSATQDMVDNAKTALEQAQAALVTNNANELKITQSQVSGEYKFNLTQVGDIDWLH + LKGDGSNGIVQIKKDTTNPSAISFNILPNSVPEGKVSNGDPDRIAKTWSDGMAGYESG + TDDTGFAVLSPPVDNRGAGTCTENVGWNFTVSAQPVQTTVIFTLGLWQANVGVNFYMD + DVQVDTKNISAGGGALTFKYQVTVPANKVLKVEGIQTDILWQDGNSSISSIAVSSVVP + VDKEALQTLYNNVKDIVQGSYTEETWTVFESARTTAQAVLDDPSATQTLVDNAKTSLE + QAQAALVTNNANELNVTQSQINGVYNVDLTAVGDVDWLHLRGDGSNNIIQIKKNTQNA + ITFSALQNTVPEGKETNGDTNRTAASWTDGMSGYEALANDTGFGVFLPLSDDRGAGAC + KANVGWNFTIAAQPTSTTVVFSTGLWQAKVNVNFYLDDLYVSTKSMEAGGTAQAFKYQ + VVVPANKVLKVVGLQTYKNAYDGNSSLSTIAVSSQEIADKSSLQAFYDEFSGITQSFF + TDASWTNFIDARTAAKAVLEKAVVTQAEVDNAKAALILAQNNLVKKDTNVMIDYTGGK + RGSSYGLGNLVDEQDRYQTFTSSEDFIMEYVQVGLYKNSDDGSDLVVKLYATDNNGLP + TGSPLAQTTVNKKDVINGGLTTAKLVYDVKANTRYAIDVTQTTLKNGMYNWIVMQKNH + YSKNEFFGKITSGKFVPEAWLGTGLLRVVKKINVDRSALEALVSEVSNLNEKIYTVES + WLHLANAAEEARNCLNNFDALQAEIDAETGKLQAAKDSLVININISDFSSFISSFDNM + VVKGYTDASVAILTDAITNAKQLDISASDDEKLQAYVSVLNAIAKLQVSGKYSSETDG + GLTGSFGFEGDMNAPIAFIDGSFRLPSRGNLMIRFGVTGLKAKGVSIDWYNRDGYLPC + YVSEYTVDDVTYKIEEFANKHTIDGNPVEVAYVKMTAINNSSEKRLLPVVSKELVPLN + NAAESSYVINAGETVVREYAIKADRFENEGHTGERHEVEPKAPFPADQKILEAAKAVA + DIGENSIFENNYASMKTYWDDRLAGIIDIKMPNSKDANNKDSLVNAYKAGYIYTLIIK + DQTFLHVGENGYDRLFSHDTIGILQSLITAGDFVEAKDYLESVPMTGGINIENGEVDP + DLYWDANWKLPWAYSVYLSKTGDIDFIKEKYEGVLKKMAHSIHDDRTGPNHDGIMKST + LAIDTYGQWTVDDQAALMGLIAYKYICNELAIKENDQSKKEYYLAEAQWANAEYDSLL + KVVTETLENTINRNNLNYIPASIVEPNTANRCNDIRDGNWASMLLFGSFPWDGYLYGA + DQSKAGANIDMIDQTYAYGIERRKDLPGASPYNFGGYPHGWYSSAYNAGYGISALRGE + AYRDIGIKAYEFAVNSAMSSPFGWWEGVGPGGNDYPSQDPTSPLWNRDNASGGGGSCQ + HMWGQATASKVLYDAFIAERIYNDNKNAEIIIGRGIPKEWVTNATNENNVVAAVENYP + ILQGGRAGYTIVRNGSNLKITFDCNKTNSKVDAGTVEQWSIQLPAMVNNISSASVGTV + DNANGIVNVPIDTKEVTIVLKDLLGSSMSIDTVSLPNGKVGEAYSNVLTATGGTVPYK + WSAEGLPAGLTITNEGEIKGIPTASGTFTVNIKVEDSSNPILSISKTLSIIVAPANQP + GGSTGDTNGSTGESVIPVDSIRNGDRTILSVSLKASNESGTASANIGKAIVNELVQKA + KEAEKNGQKATVEIKLDSVKDTKSVKIGVPAESIKEIAETAGAEIKINTRIGSVIFDA + KAIDTINASASSGNVNIIISNVQASSLSEEIRDKVSERTVYDFSIQADNKEISDFGGG + TVRVSVPYAPKVNEKHSSIIIYGIDNAGELRTVRSIYNPATGTVDFKATQPLQYVVGY + NEVNFTDVKADAWYEKAVGFLAAREMVSGTGDGRFAPQNKVTRADFLIMVMNSYGIRA + DKAVTENFSDAGSKYYTGYLGTAKRLGLVSGTGDNKYMPEAAISRQDMLVILYRALDI + LGELPDAKTGNFDSFIDTKDISGYAENAMKLFVKAGIVIGNDKQLNPKSDTSRAEAVQ + VMYNLLSGQGI" + gene 3800943..3802745 + /locus_tag="Ccel_3248" + CDS 3800943..3802745 + /locus_tag="Ccel_3248" + /inference="protein motif:PFAM:PF06580" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase internal region; + KEGG: csc:Csac_0125 histidine kinase internal region" + /codon_start=1 + /transl_table=11 + /product="putative sensor with HAMP domain" + /protein_id="ACL77537.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR010559" + /translation="MLVNIIQYIRKTPLRYKITLAVVLLLLLSMSLIGFYFYWNMASV + LTKNANDNLVNLIQQANGNIENSFKIIDTTSLHFLSNKSMRSWTLDDTSFDGDFYSIF + INKRHIEEDLKYSLMFNNAWDMNLISTAYVFLNEDTYCSIFKSTPNIQLINDNHINIF + KRISGSKIRGKTMIPPSLNDKTIYFTRIVTNISNPKQRLVMIFGTEEEEFYKKYSELL + SFEGSMVYITDEKGIIYSSSQRDNLGNNVPSSILNLRNDTGVSEVDIGNVTYLIAHRK + ISDTGLDFIAGIPKEQVLAKLSDSMKNYIVITAIIVFISVFSGIIISLRFTRFVRDML + SVINRVKVGDYDVKMPYYKDNELKLVSNTFNNMTYEIKYLINQVYEKQLLIKETEFKF + LQSQMNPHFLFNTLITIGYKAKLSKDETVYKMVTSLTELLQAGIYSNSQAKIPIRQEL + EFIDFYLYLQKMRFGDKLEYKIYVSDESILNFVLPKLSIEPLIENAVVHGLEEKVGKG + TIELNIRRENESIFFVVTDDGAGFKTDKINLDDNDTINMRKKGHNSIGLMNTHKRIKL + MYGDPYGVQIESRTNIGAKVTVHIPVDRSETDNV" + gene 3802738..3804333 + /locus_tag="Ccel_3249" + CDS 3802738..3804333 + /locus_tag="Ccel_3249" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; response regulator receiver; + KEGG: csc:Csac_0684 response regulator receiver protein" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, AraC + family" + /protein_id="ACL77538.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR001789" + /translation="MYNVMIVDDEPVIKQGLLCFVNWEALDCKVICDAENGIDAMEKL + AVHPVNIVLTDIKMPGMDGLELSKLIYEKYPSIKVIILTAFSDFTYAQAAIKYNVLDF + VIKTNPTEKIPDAIRKAKDLIAQEKEKEEKLKLMEEKAILRLSEIKENFFKDVFNGII + VNDTLLQSKLIELEISIENYFVVLFDIHNASNGDSSISPEDYNKFIHSVNNLLNMAFK + SYPHYTVAMDRNLLVAVISFKNYNVPVCTQTLLMTCNEILSMADSFMRFTISIGLSQM + HQKVQALSVAYQEAREALRGGFYNNNHVSVFVPRTPPIPSLINQPHYIADKIVGSLKL + ENPSEAIISLENLLEEYRSNKEPIENIKVSCMLIASYCYRLVASYKLFAPELADSEPE + VYKQIQSSRNIQNLLNILRQLVENVSQVVENNGNKFSCLVKETQKYIRDNYNKNISLQ + SIADHIHVNSSYLSRLYKKETGESIVDAINKYRIENAKKLLKDPVYKVFEVACAVGIE + DPAYFTHVFTKYTGMSPKEYKSK" + gene complement(3804344..3805438) + /locus_tag="Ccel_3250" + CDS complement(3804344..3805438) + /locus_tag="Ccel_3250" + /inference="protein motif:PFAM:PF00248" + /note="PFAM: aldo/keto reductase; + KEGG: amt:Amet_0907 aldo/keto reductase" + /codon_start=1 + /transl_table=11 + /product="aldo/keto reductase" + /protein_id="ACL77539.1" + /db_xref="InterPro:IPR001395" + /translation="MLYKRYGNSDVELSAIGMGCMRFDDHVILENKFEKYVELILYAH + ENGINYFDTAPFYCHDKSEIITGMALSQLPRSSYYVASKTNLATLQNECTVDGFRRRL + ETSLKRLKVDYLDFYYLWCMLDLNSFYENCEKLFGFFQQAKSEGLIRRIVMSSHMQGD + DLVRALDTKLFEGVALGYNALNYRYRKSGIEAAYNSGMGISVMNPLGGGVIVDNPRVF + KFLTEGTNLNVAQGGLRFVAAQKEVSVTMTGFTTKKHVNDAVKAIENLEIKPMAEICK + EYENKGIILNDLCTGCGYCNHCPQNIEIPKFMDAYNDKLLGRSIVKRLRRHWHLSAKA + AVGCIKCGKCEKMCTQHLPIIERIQEIASL" + gene complement(3805532..3806467) + /locus_tag="Ccel_3251" + CDS complement(3805532..3806467) + /locus_tag="Ccel_3251" + /inference="similar to AA sequence:KEGG:FTH_0345" + /note="KEGG: fth:FTH_0345 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77540.1" + /translation="MNIDKAVLDHYLSTSTYTYAGVYKDYFKSLPDDLKELSELVGQQ + YIQRFVLKCGNSGENENLRYGDMDRFPWYRMCCEDDILLTAVAMTAEIFRLNEKGFFP + GRQVEERIVISCRHITVILGAILKAKGIPCRSRAGIRAYHGKPVDHWINQYWSEKENR + WVNFDGEGIMYRECEGLFTTYDIPDDQFYWIAQLWLDVRSGKLDGNNYILLDGSKSLK + ALAKIMMYDFHALMNDEVNYHFIPYFIDNNRLEIDEGIAKEIDGLAELMVNPDENFKE + LVNVWETNRKFRVLNAPLIRTMDNSKVLFESTSNG" + gene complement(3806493..3807917) + /locus_tag="Ccel_3252" + CDS complement(3806493..3807917) + /locus_tag="Ccel_3252" + /inference="protein motif:PFAM:PF00501" + /note="PFAM: AMP-dependent synthetase and ligase; + KEGG: hmo:HM1_0197 long-chain-fatty-acid-CoA ligase" + /codon_start=1 + /transl_table=11 + /product="AMP-dependent synthetase and ligase" + /protein_id="ACL77541.1" + /db_xref="InterPro:IPR000873" + /translation="MSDCFYSVLDSQSTQVFYIDGENKYSYAQLWNLISRARVDFKEK + GIKINQRVPILCNDPLHFIVGLLSIISLGACAVLIETSKKPKEIIEILEQIDSKIILT + DQYMGSDLSSYDVTITEFSLKNLTEEKDSRISCEMNSEGCIIYTSGSTSKPKGVIRSN + RILFEHSKMLQRTYNLSSNDTFLCLVQPQHAFGLENVLGAIYSGATLVVQKNFSHTEV + INFIENGKCSVVVGVPFQYELLTKVNKKVPVNKLRYFLSAGAPLKKDVNAAIYSLFGI + PVTQIYGSSELGATAINIDISKSFEYDAVGKPLPEVQIKIIDSENRVLENNQIGEIVL + RSPYCTIGYVGVSEVSKTDAYIEDGWFYSGDLGYINDKGVLFITGRKKNVINIAGKKV + SPEEVERVIKGIEKILDVKVEGEKNSLSGETITAKVVVENGADISEQLVLNRCKELLS + DYKIPRHIVFTDKLEYTSTGKLKR" + gene complement(3807949..3808227) + /locus_tag="Ccel_3253" + CDS complement(3807949..3808227) + /locus_tag="Ccel_3253" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: acyl carrier protein, mitochondrial + precursor, putative; K03955 NADH dehydrogenase + (ubiquinone) 1 alpha/beta subcomplex 1" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77542.1" + /translation="MNYSDYDKFLNILREMLYENLKDMEITLDSDLKEDLFLDSISFY + TLIVSLEQAFNFTFSKVNIDADEFKTVRSMIAYMDLLRTSNQYNELEV" + gene complement(3808306..3809235) + /locus_tag="Ccel_3254" + CDS complement(3808306..3809235) + /locus_tag="Ccel_3254" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77543.1" + /translation="MLLDTFQGYNCYSSALGEYAKQKNIDQVENIILSQWSFFFDEEQ + FYKNQWYTGAADGPVDVVLNEDLRNFANIEVLEHISSESQAIDEGRKVLEKHGLQIVL + MDFYYMNSFNWKSLSRFNVTREHDPHFAVLTQINENSVHIIDPYYHHEENMSMEDFIK + SRNSMTKQGKISFNSYEIFSNGTKKSNIKELLYYRFNRYLQEKMFGKITQFGQVVKKQ + LDNKDRKWAFTGYNCLNSVVYQHQNLINLQKKFSLEMPPNLQELLDNWALIRKKLFEY + YSRGSYNTEEISNLICKVASSEEQFAQEVLKVL" + gene complement(3809284..3810531) + /locus_tag="Ccel_3255" + CDS complement(3809284..3810531) + /locus_tag="Ccel_3255" + /inference="protein motif:PFAM:PF00278" + /note="PFAM: Orn/DAP/Arg decarboxylase 2; + KEGG: gme:Gmet_2019 Orn/DAP/Arg decarboxylase 2" + /codon_start=1 + /transl_table=11 + /product="Orn/DAP/Arg decarboxylase 2" + /protein_id="ACL77544.1" + /db_xref="InterPro:IPR000183" + /db_xref="InterPro:IPR002986" + /translation="MDDRQIINIAHKYKTPLYLFDGDRLEETYFNMKKVLPDAFEFFY + SVKANPSYGICRILQKCSSGIEVASAGELHLALEAGFDNKKILFTGPGKTYSELEFAV + DSKILAINAESYKEIMLIDDIAKAKNKIVDVGLRIHPNFKIESKNPAISMMGTGTQFG + VDIDEIPEILKYIKSSKNLNLVCFHVYAGSQIFQPDTTLAYFEQTINIFKELIEKNDL + HIKVLDFGGGFGVSYDGKNKPYDFEYFGAEINKLYHKYEDFFQGKKLVFESGRLLLAE + SGVFLTEVQYRKVLHDKVFLITDGGMNHNSLSTFREKKIRGNFLMKILDNRNEEETVT + VAGPLCTPEDILGRNVTLNKADRGDILCIKNTGAYGSSFSPLGFLGHPAPCEVLIYKN + NEYYLKKHGVFKNILNGQEIIEL" + gene complement(3810559..3810810) + /locus_tag="Ccel_3256" + CDS complement(3810559..3810810) + /locus_tag="Ccel_3256" + /inference="protein motif:PFAM:PF00550" + /note="PFAM: phosphopantetheine-binding; + KEGG: sat:SYN_01151 acyl carrier protein" + /codon_start=1 + /transl_table=11 + /product="phosphopantetheine-binding" + /protein_id="ACL77545.1" + /db_xref="InterPro:IPR006163" + /translation="MKEKIKEIICSHTYIKREDLDSIGDNDKLTELGLDSINVVYIIG + EIEEEFNFSFYDEDMLLVNFETIDKILKTVGKYVSVKSV" + gene complement(3810840..3812153) + /locus_tag="Ccel_3257" + CDS complement(3810840..3812153) + /locus_tag="Ccel_3257" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: saq:Sare_0485 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77546.1" + /db_xref="InterPro:IPR011761" + /translation="MSIIKDSGNQKILIYNSGIEHEWEDKKTGVRKVNNLKEQKILNR + QAELLFFISNAEDTVYVVKESDPEFLKDMEVFGISKPKTVVIPDLDLPISKIIVENED + ILQDLKTRFAGQKVLYVPYILSSHDEKISEYCNFAIYGSSSDLITKLNNKANARRIVE + EIGLSCIEGGICSSKEELEEQYNKLKGKGYMRFVLKEPYNSAGKGVFFIKDEKQFYSF + LKMMRFNNENKNFEVIIEGWIDDKRDINYQIEISKEGEVKLIAITEQIISVTAYKGSL + YPPKLTKQQEDYYNDCAQKLGTKLYQMGFSGIIGIDSIIDKDGTIFPAIEFNARFNQS + TFYIPFLNYFRNHSKRILIRSYDVKTNNSLNYVRLKEILRENKLLYCNESKKGIIILN + SSCLSIDKDSDGQYDNRIYLANVYDKNDKDDSRYEEMDNLIKVIN" + gene complement(3812150..3813217) + /locus_tag="Ccel_3258" + CDS complement(3812150..3813217) + /locus_tag="Ccel_3258" + /inference="similar to AA sequence:KEGG:Dde_1603" + /note="KEGG: dde:Dde_1603 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77547.1" + /translation="MIECEVKCKKCLKQIPVDSEGKSMAKNGLCLECYNDELKAQSID + WMEKEQELQEKIEEVRRAKGTFDGLVMLSGGKDSIYVAYILSKVYKLNIVGLTIDNGF + EYQSTFDNSYDIAKKLGISHFIYRLPFEDMREYYNFLLTEDTLKLQDCSQLCFFCGRL + LKTISIKVAKMLNVTAVFSGHTLEQIRALGDEEGKDKSFDIRRRYIQNYSVQNYKKAL + DLLKEKSKESISYLFDDNLETLNFDRFIYPLQYFEYKPIEIVELLSKELGWVADTHFT + KKYISSGCKLGKLMEYIATKNGSTTYVEREFSDQIRRGSLSKEDVIKIIESRVDDEGE + IQEIIDLLSTSKEKLFWVGEK" + gene complement(3813281..3814591) + /locus_tag="Ccel_3259" + CDS complement(3813281..3814591) + /locus_tag="Ccel_3259" + /inference="protein motif:PFAM:PF00202" + /note="PFAM: aminotransferase class-III; + KEGG: bca:BCE_4189 + adenosylmethionine--8-amino-7-oxononanoate transaminase" + /codon_start=1 + /transl_table=11 + /product="aminotransferase class-III" + /protein_id="ACL77548.1" + /db_xref="InterPro:IPR005814" + /translation="MGSTYWRPFNRADGENVINIVKGEGIFLYDDSGRRFQDAYSGLW + NMNYGYSDNDIKKAIKTQIEELPYINPITLGNPKASELADKLCSITHDEITKVLFTCS + GSEAIEAAIKISRKYNNLIGKKQYHIAVISESYHGSYYGSMSASFYDENEKQGYGPMV + DGFIKLVLPFSRRCKTEEMTIDEKNKVMQKLEETLQNNKDKLCAIIVEPILASGGVIP + LFEEYLSRINSFCRENNVLFVCDEVATGFGRTGTMFRFQKFDLKPDIITMSKGINNGY + LPLGAVCISEKIESAFLKENQILFHLSTQNANPICLAAALATIDKMERDNILEVVNAK + STYFKKILNDDLSNLSMVFEIRIHGLMAAIDLADRETNNPISHEQLIKVISTIYSLGC + FAGISYTKDITSSILIFPQYIATESDLDNIVKIVKTAISNSSGI" + gene complement(3814638..3815207) + /locus_tag="Ccel_3260" + CDS complement(3814638..3815207) + /locus_tag="Ccel_3260" + /inference="protein motif:PFAM:PF01947" + /note="PFAM: protein of unknown function DUF98; + KEGG: btl:BALH_2115 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF98" + /protein_id="ACL77549.1" + /db_xref="InterPro:IPR002800" + /translation="MMQMNNSTNRMLLTEITQTERKLADILLVSKSSTTRLLEIMTGR + EVEINVTSQKVTEEKDLSENYYDYISPLKKSEKYLKRTVSLHSHGNIFSDNIVIASFD + NISDEIKNALLRSKTPLGKIIKDNETKREILWSGYLNKNELNAIFGEQRFSLLEYPFK + KYLIYVNDNCCFCLLEVFNIKEIAKFFWN" + gene complement(3815510..3816259) + /locus_tag="Ccel_3261" + CDS complement(3815510..3816259) + /locus_tag="Ccel_3261" + /inference="protein motif:PFAM:PF01061" + /note="PFAM: ABC-2 type transporter; + KEGG: cdf:CD1603 ABC transporter, permease protein" + /codon_start=1 + /transl_table=11 + /product="ABC-2 type transporter" + /protein_id="ACL77550.1" + /db_xref="InterPro:IPR000412" + /db_xref="InterPro:IPR013525" + /db_xref="InterPro:IPR013526" + /translation="MLNILWRNIKWRFQNPLSIIVTILQPLIWLVMYSAVAGQAMKKT + GIGNYTAFILPGIVVLVTFSACSSGGIINFIMKSNGSFYRILIAPVKRKDVVLGQMLE + AILVSFIEVTILFVISLLFSVRVGSGFLGVLLIILLIFLTAFFMSGLAYFISLLLPNE + VIYETIMNAIVLPIFFLSTALFPPESLSGGLAIAVNLNPFTHIINSLRRIILGGELLI + ADILPVIILFTVMCLGSFMLAMWKLKKETLQ" + gene complement(3816253..3817215) + /locus_tag="Ccel_3262" + CDS complement(3816253..3817215) + /locus_tag="Ccel_3262" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cdf:CD1604 ABC transporter, ATP-binding protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77551.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /translation="MLAIEVVNLNKQYKNGVKALDNLSLKVNQGEIFSLLGPNGAGKS + SLINILTTYYEPTSGKITVLGKDLCKEPGWVRTQIACVAQHVSIDAHLSLMENMMFQS + KLYKVDKHLAKERIASLIDNFELSGYLKYPTSSYSGGVKRRLDIAMNMISAPKILFLD + EPTVAMDVESRKAMWKMLLKIREDYGTTIFLTTHYLEEADQLSDTICIMKDGKEIAQG + TPADLRNHTRQNMLRIGFSSVEETKKYKKALDDSGLTRFTKIEDRFILAGVDDSRKDF + KTVNKWLLDKDAELNAIEIVEPSLEDVFLSLISSREQREEERVC" + gene complement(3817221..3817676) + /locus_tag="Ccel_3263" + CDS complement(3817221..3817676) + /locus_tag="Ccel_3263" + /inference="protein motif:PFAM:PF06445" + /note="PFAM: transcription activator effector binding; + KEGG: cdf:CD1605 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcription activator effector binding" + /protein_id="ACL77552.1" + /db_xref="InterPro:IPR010499" + /translation="MNYEIEVKDVEPIRVAFMHYKGPAAGASKVMPNVFKSIQGKANG + APFICYYVMDQQTMTGEMDLCVPTAENPVGNGIAVKDMPRIKAISATHIGPYETMQPV + YEAIESYAREKNLILQPPFREVFIKGPGMILKGNPNKYITEVLFPIKEE" + gene complement(3817698..3818561) + /locus_tag="Ccel_3264" + CDS complement(3817698..3818561) + /locus_tag="Ccel_3264" + /inference="protein motif:PFAM:PF06445" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; transcription activator effector binding; + KEGG: cdf:CD1883 AraC family transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL77553.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR010499" + /translation="MEWLNQMSRAVDYIENNLTNDISYDEVAGIACCSTYYFQRIFSY + IAGIPLSEYIRRRRMTKAAFELQLSGARVMEIAVKYGYSTAAAFNRAFHSVHGVAPTV + ARVKGTKLNAYTPISFTINITGGERMRYRIETRDRIRIVGVRVPLEEEPEQNFEIVPA + FWDNTLKSSVFSKIIELTNKDPHGILGITAYENPKEIYYYIATSTDKPVPEDLVEYEI + PAATWVIFECDGHFPESVQTIFRRFLTEWLPFSGYDYAELPDIEVYPISEKKMIGGHS + EVWIAVKTAKK" + gene complement(3818689..3821670) + /locus_tag="Ccel_3265" + CDS complement(3818689..3821670) + /locus_tag="Ccel_3265" + /inference="protein motif:TFAM:TIGR00630" + /note="TIGRFAM: excinuclease ABC, A subunit; + PFAM: ABC transporter related; + KEGG: cau:Caur_1688 excinuclease ABC, A subunit" + /codon_start=1 + /transl_table=11 + /product="excinuclease ABC, A subunit" + /protein_id="ACL77554.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR004602" + /db_xref="InterPro:IPR017871" + /translation="MNEDIEIVKREFTSRRSFPRKIISDERCSSKEIVVEGACHHNLK + NINITLPKNKLIVFTGVSGSGKSTLVFDTIYAEAQRRFVDGLSSTSKRHFEKVGKPSV + DKIYGLSPAIAIQQKSLGNNPRSTVGTLTEISDYLRILYEKIGIPYCLNCGTPIYKQT + PREIAESICKKFSAGESFIIYAPLLTQKTNDINSSIRELFQGGFRKLRLDSNIIDITE + ETRISQTGNLSIDVISKEFFLPNVLGKENNTEFIDRVTAEIRNLLLYTKGTLEIVSNS + GKILYYSAEQICARCHTVFPEITIQHFSYNTPIGMCPDCRGLGVEQEISPLLLIDDEN + VSILDGALKWFGNLRDGKKSTWPTGPLDILFEHYNLDIETPWSKLPEWFRNIILYGSG + EEKLKYRSAQGMKDNYKAVKGLVPELTRLYYDTDSEHTRKKYGDYMVSKPCKACKGTR + LCPEARSIKVGNLTISEVNALSIDDAMKWILEIYNSLDNKTWELSKELLMEIYNRLSL + LVDVGLNYLSLNRTAPTLSGGEGQRVRLACQLNSGIVDVLYVLDEPSTGLHPKDTKKL + IQTMQRLRDLGNTVLVVEHEQDIMKNADWLVDIGPKAGNGGGYVMAEGTPDVVLADNN + SLTAQYLCGKLKVGLKRVPKDVRNQGKWLILKGVKYNNLKNVTARIPIGSLTCITGVS + GSGKSSLIGGVLEPLLNRRINGGLDPVGKYESLTGDEYLDKLVNVSQSPIGRRPTSNP + ATYTGLFDKIRKVFANTEYAKEKGFNSEYFSFNSNKGRCEICEGQGQIKIEMHFLPDV + WIPCTECGGKRFKADILKAKFKDKDISEVLEMDVEKALSFFIGYKDIVGILQTLKDVG + LDYIKLGQSATTLSGGEAQRVKLAKELSTKVKGSMIYILDEPTTGLHFNDIQHLLKVF + QRLVDIGHTLVVIEHDLNIIKMADWVIDLGPEGGADGGEIIAQGTVEDILNNPNSYTG + QALKSSINPQEGYFTGDKICL" + gene complement(3822285..3822740) + /locus_tag="Ccel_3266" + CDS complement(3822285..3822740) + /locus_tag="Ccel_3266" + /inference="protein motif:PFAM:PF01797" + /note="PFAM: transposase IS200-family protein; + KEGG: dsy:DSY1392 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transposase IS200-family protein" + /protein_id="ACL77555.1" + /db_xref="InterPro:IPR002686" + /translation="MANKENSLAHTKWMCKYHIVFTPKYRRKVIYNQYKQSIREILIR + LCKYKGVEILEGHLMPDHIHMLVSIPPKISVSTFMGYLKGKSALMIFDKHANLKYKFG + NRHFWAEGFYVSTVGLNEATIRKYIQEQEKHDIMVDKLSVKEYEDPFKG" + gene complement(3822917..3823078) + /locus_tag="Ccel_3267" + CDS complement(3822917..3823078) + /locus_tag="Ccel_3267" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77556.1" + /translation="MKYVSTEGATNDDAARRLAGLRTSDGKDGVRFDSDWELQKEIPP + TKFRRYFFF" + gene complement(3823369..3823545) + /locus_tag="Ccel_3268" + CDS complement(3823369..3823545) + /locus_tag="Ccel_3268" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77557.1" + /translation="MDKQFDSFIMKRCEQYIKNTENITEEQLNDFKGIYQAGFQDALK + ILQSEKKIEIHSYI" + gene 3824601..3824765 + /locus_tag="Ccel_3269" + CDS 3824601..3824765 + /locus_tag="Ccel_3269" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77558.1" + /translation="MTILTLILAVVVGFNEIGIYICQKRNIDDDLFRIIKLCVIFMTL + GCNFAAFILS" + gene 3825367..3826206 + /locus_tag="Ccel_3270" + CDS 3825367..3826206 + /locus_tag="Ccel_3270" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77559.1" + /translation="MSKNAMNYIYICPFCGNVNKYPENCKHQICLCGNLMQIEHSYPN + LQAVDSIRTVQYMFDACKNIDKNNRLAIQNFLKQPKVGVNILDEDLIKYISLYEAVRS + KYRDNFVDDFINIDDEFEKKMLDKYNVDFSVIDSFIASSRLFLRNYFRKSFIIMLATS + IELLFNDYFGSLVLSKLGNNGGEVFLSSYEYASIKDCIEVCSAFTDKPIDYIMNSLSL + GFFDRWSTLRNERNSIIHSNNRYISSKRINDAYKLIEESILVFSNLKSLIYKQNKTNK + TIL" + gene complement(3826465..3826806) + /locus_tag="Ccel_3271" + CDS complement(3826465..3826806) + /locus_tag="Ccel_3271" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77560.1" + /translation="MREFLLNNLVTIIILIACIIYIAYLIVKQRWRKLREIAYKLIRQ + AETTITGTKKGRERFEQVMTQLYMIIPPWLRLFITQSLLEKKLQEWFDKIKDSLDDGI + VNNSIKPPGMK" + gene complement(3826820..3827473) + /locus_tag="Ccel_3272" + CDS complement(3826820..3827473) + /locus_tag="Ccel_3272" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: dsy:DSY4643 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77561.1" + /translation="MLTNIGLVEHVKKALNEKWGYVRGTYGQVLTESILQAKLKQCGD + DVGRYLDFIKGHYIGRRTADCVNLIKSYLWWDSGKSNPVYTSKYDVNADGMYTAAKEK + GLLNTIPDIPGICVWHKGHIGVYIGGGQVIEAHGTKAGVIKTPLKGSTPWTHWLKCPY + IQYIEPEMTYNEALKIICEEVGSPYEYWLPKLPEDKAKKSASSLPALFIKIAKKLKK" + gene complement(3827486..3827740) + /locus_tag="Ccel_3273" + CDS complement(3827486..3827740) + /locus_tag="Ccel_3273" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77562.1" + /translation="MTGECGYRCLNEERIRTLEQNHSETKVYVKAIKEDLTEIKADIK + KRNESDNKAWSPIVLELIKTLTTAITVIGAIVGVLKFTGK" + gene complement(3827771..3828061) + /locus_tag="Ccel_3274" + CDS complement(3827771..3828061) + /locus_tag="Ccel_3274" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77563.1" + /db_xref="InterPro:IPR013513" + /translation="MEALRCAVLAQDGTTVENIVIADQSFAYANGLIVCGTVPVGIGD + IYRDGFFYRNGVKLEAEQTAIEQLQAENAELRAKIEQVSNAVDCLLNMQGTT" + gene complement(3828078..3828938) + /locus_tag="Ccel_3275" + CDS complement(3828078..3828938) + /locus_tag="Ccel_3275" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mbb:BCG_3414c hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77564.1" + /db_xref="InterPro:IPR002173" + /translation="MSRSFGESFIRPKGEKVQGTPIKVNYTGSCKIVTESASRGYIEC + TSSGTLSFEGRLPAKLDVFLVGAGGGGSSSGSSYVGGGGGASGYTKIYYGVSPTTPVT + IYVGSGGTAGSSGGSSTYTGLTPAAGGNGATSSNGANGGSAGGGGMILSTSAWSSGGV + AGSNGGNGTPPYYNTGSSGAGSNGTGQGTPTTDFWGRIHAGGGAGGAGGNTSTGVGAS + GDPGISSFTAGSGSAGQMGSVGVMGCAGGNGGGGYGGGGGGGGYGSSNRGTGGTGGSG + IVIVRWGYPT" + gene complement(3828939..3829382) + /locus_tag="Ccel_3276" + CDS complement(3828939..3829382) + /locus_tag="Ccel_3276" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: mag:amb4272 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77565.1" + /translation="MPANTIPIYPASPNISGVYIQTADTNIKAPVTNGMVLATGGTNG + TRVDAIKIRALGTNVASVLRIYWNDGQGTAEVNFKLIHEVALAASTAQTAAITGVDTV + LLPINYANDGNGVLPPALKSGEKIYVSLGTTVASGYSVTFMGGDY" + gene complement(3829382..3830200) + /locus_tag="Ccel_3277" + CDS complement(3829382..3830200) + /locus_tag="Ccel_3277" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ctc:CTC01541 phage pre-neck appendage-like + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77566.1" + /translation="MAINKYCNLYGENKIKDDYDKINIGFSEVETDITGVLNSESDRE + TAETDREVNEVDRQLRYSNTKHYGQYDPDFVYHTNNIVSIDGCSYMLKENPDGTILES + QGFTPPTYPVEENEHWKLVGKKGDKGDAGTVPNITVGTVTTLQPGKLVTVTRQAGSPN + ESPVFDFAIPKGQDGTGAGDVLWADIDQDDDGIIDTANTANNALNSGNADKLGGQLPG + YYAKETSLEQHINNSTDAHGLNNKLDKSEFNNYIGGTSHVSSILYAYKNIGGAL" + gene complement(3830178..3830459) + /locus_tag="Ccel_3278" + CDS complement(3830178..3830459) + /locus_tag="Ccel_3278" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77567.1" + /translation="MATQRILDRNYKIEEGGVVTIVETTQKQLNKAELQAQKIQLLNR + QTQLSNQVTELQKQSKAIDESIKEIDDMVARLNLLGGRGGGQNGDKQVL" + gene 3830573..3831139 + /locus_tag="Ccel_3279" + CDS 3830573..3831139 + /locus_tag="Ccel_3279" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77568.1" + /translation="MKKFFAGLITGIIVAISFTAFAAVQLKVVPNPYPVYINNVKSDV + SGYNINGSTYLKTTDFKSAGLDVKYNKNKKQIEVKSTTTGLTNNNSGTTGNNQNPVFL + YEGDAKDTTYRGYKAILYNGDTFINAVEFLKKLKMTIKYNTKQDSYQFYKNEVKILET + LNSTSEYYIVYENRPYFNVKFLGEYLEG" + gene complement(3831151..3833145) + /locus_tag="Ccel_3280" + CDS complement(3831151..3833145) + /locus_tag="Ccel_3280" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0969 KID repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77569.1" + /translation="MYQVSDLFKKYARNYDRTLDAKVLIDDLTLTSSAVVEFTIEDDI + APSGDFSIGTATASKLNLYLRTVETIPVNAKIIPYIRFLGNEGESEWFKLGEYFIDSR + IIEQKVWKLTCFDRMIYGEQNFTSSLTYPASYQAVWDECCGILGVESSANLNPEYMFR + VAPSGYKIREVTGLIASAHVASAKIMKDGTMGLIKFNKSSQTVEKVTASNYIKAPVTN + PAKTITRIVVHQNDNGDTSQLEAGEGDESKTLTINNPYINQNILNDMYATLNGFRYVP + YSMEWFCYPWLEVGDTIDIEQFQTLSWLEATMPWQDADFPWRDLPTFNTVLMKNTISY + KGGLKASSSASAASAQQSETKFKGPLTRKVDQLDKEAVKETKNYYGVTINQDVGIKVD + STSGSSAIFNGDKIELGASSDSGIYFDYLTGKYRINGTLEAVDGRFDGTVLAENIDTT + NAKISVAQIEDLIVGNNVTMGPNATISWSKVIGSNAGAVSAWEDSGYATHIDAFGMYT + GSIYAHQINGGVANLNDEVNIGNPNSLMPKSLNFYNDASSSSWSGLSLDINGALLLDS + YNGVNITGGSNWVDIGMNGNDFIEVNGEVKFNHDCKFYSVDFSSASVWGLSTEPFVQQ + NHNHGIPSGTRLAVVDTSNNITGYVTFVESGGFSHWHDMY" + gene complement(3833150..3833509) + /locus_tag="Ccel_3281" + CDS complement(3833150..3833509) + /locus_tag="Ccel_3281" + /inference="similar to AA sequence:KEGG:LJ0323" + /note="KEGG: ljo:LJ0323 Lj965 prophage protein" + /codon_start=1 + /transl_table=11 + /product="Lj965 prophage protein" + /protein_id="ACL77570.1" + /translation="MQLKINGIEIAAYPTEFTVTPLDVDNAETTNRAADATLHRDRIA + VKRQIDMSFGLIEWPVMATLLQSMSNPYFEVYYPDPMEGKYVTKTFYVNNRPCQAAVE + QKGKLYWKGLKFTLTER" + gene complement(3833523..3836048) + /locus_tag="Ccel_3282" + CDS complement(3833523..3836048) + /locus_tag="Ccel_3282" + /inference="protein motif:COG:COG5412" + /note="KEGG: dsy:DSY2176 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Phage-related protein-like protein" + /protein_id="ACL77571.1" + /db_xref="InterPro:IPR000209" + /translation="MSNGSVGQIALDLGVNYDGFNKQLSGIAGNATNMVGGTFKKLGG + IVAAAFAVDKLIDFSKKSMELASNLTEVQNVVDVTFGSMAADINAWSKNMLSGFGLSE + LSAKKYSSTLGAMMKSSGLAGVQMEGMSKKLTELSADMASFYNLSNDEAFEKIRSGIS + GETEPLKQLGVNMSVANMEAYALTQGIKKQYSEMNQAQQTLLRYNYLLSVTKDSQGDF + ARTSGSWANQIKLLGEQWNIFKGSMGAGFINILAPIVRGLNFLISKLQIAAQYFKAFT + ALLFGDASGGSVSGAANNAASATSDMGTAAGGAGKEVKKAGKDVKGALGGFDQLNTLA + MSAADSMDDAGSAAGGLADMGGMGDMNLGGGNIDIGIDPSKLKPLQDILNNIKSIASQ + VAGYFVANFGPPIAQAISAISVPLQGWKTAIADAFSQFQTLGEPLKQWFVGDFTTQIQ + TGIRVTGNVLAGLLDTGLKVFNTIKEVAFPIVSWFVTDGLPMISQFTTQWGNLFQNMF + DSTKQIFDMLWDQGVAPGLRVVSGMILDTLNIIKGFWDDWGGKIFEGLNGLVGSIKSV + MTNLWQNFLQPIWQNICETISWLWSKHLKGLIKEITDFVGKLVTAVLDITNKFITPLV + NMLIKVLGPTWSNIFNGIVNVIGTVVGTIVDVIKGLIKSLGGLVDFIAGVFTGDWKRA + WTGIKDFFKGIFDSIVGIFKGAINLIVDAFNFMIGALNNIQIKIPDWSPIGGGKSFGI + NIPKIPKLANGGLVSAPTLAMVGDNRNAQADPEVVSPLSKLQGMLNGGNQEVVAAINE + LMELIRNLQTPVIMKVGETEFGKAVIRTANVANRQSGYTLFEV" + gene complement(3836041..3836427) + /locus_tag="Ccel_3283" + CDS complement(3836041..3836427) + /locus_tag="Ccel_3283" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0964 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77572.1" + /translation="MRKRLPDFKRSNNEESFYDIREDWALIEASLATQYGIRIRQHTD + MPWDEFCTLVAGLMPDTPLGNIVTIRSEKDRKVIKNFTPSQRKIYNDWRLKRANKQLD + NPNVLDQKMKDLEMEFARMFGGGGNV" + gene complement(3836393..3836698) + /locus_tag="Ccel_3284" + CDS complement(3836393..3836698) + /locus_tag="Ccel_3284" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77573.1" + /translation="MSKVINITDKLSKEKPSIQIGDKTYSVDDTITNVLKFEELANIG + TSSAMVEAISLALGSKAAKELSVEKMTIQSFKVLATAVIAAMQDMEYEEAAARFQKK" + gene complement(3836737..3837216) + /locus_tag="Ccel_3285" + CDS complement(3836737..3837216) + /locus_tag="Ccel_3285" + /inference="similar to AA sequence:KEGG:CPF_0962" + /note="KEGG: cpf:CPF_0962 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77574.1" + /translation="MLKNINIQLFAAGTGVFPVHNNKFKINIKGRTELPEDMAIVKDL + ETFSPSIDANTEEWTPMDQSGWTRRAVTGKGLTFSFSGKRRYGDPGNDYIGGLLLGTG + QDVESKFEWEMPSGAKLTMDCVINLTTPAGGDSTNIDTLEFEVLSDGLPTFTPAPAT" + gene complement(3837209..3837619) + /locus_tag="Ccel_3286" + CDS complement(3837209..3837619) + /locus_tag="Ccel_3286" + /inference="similar to AA sequence:KEGG:CPF_0961" + /note="KEGG: cpf:CPF_0961 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77575.1" + /translation="MMTLAEVKDWLKTQIISCPNWYIGKIDGSKEQCIGIYNVAGPPP + MIALGGIENTSYATKAISILIHWGKNADIAEQKAQEVYNCMFGQSAEIGGKRVIQFNM + RTSEPVSVGTDDNNIFEYVIETVIFYEKEVVTSA" + gene complement(3837616..3837999) + /locus_tag="Ccel_3287" + CDS complement(3837616..3837999) + /locus_tag="Ccel_3287" + /inference="similar to AA sequence:KEGG:CPF_0960" + /note="KEGG: cpf:CPF_0960 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77576.1" + /translation="MAIRVNVKMNHAALGRLSNAQKQALEMTTEAVKSDVTLSGTIPK + ETGELERSAYVDISQISKGKTSIGFDTPYARKLYWHPEYDFRTDKNPNAQGKWMQTYV + DGPKKNFAKNAFRKLYRKLTGGVVK" + gene complement(3837999..3838316) + /locus_tag="Ccel_3288" + CDS complement(3837999..3838316) + /locus_tag="Ccel_3288" + /inference="similar to AA sequence:KEGG:CPF_0959" + /note="KEGG: cpf:CPF_0959 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77577.1" + /translation="MKLPFPDWVLVTPVKVYQETQGENGISEELIFDGKCCYDDKTKQ + ALDAERRLVTLAGKIILKGDIYPDDLISGYVMLGESKKTIYRTTRPRNPDGSVFSTEL + ELI" + gene complement(3838319..3838681) + /locus_tag="Ccel_3289" + CDS complement(3838319..3838681) + /locus_tag="Ccel_3289" + /inference="similar to AA sequence:KEGG:CPF_0958" + /note="KEGG: cpf:CPF_0958 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77578.1" + /translation="MSYVDVEYYKNTYGSTVIPDAELPRQLDKASDQIDSMTFNRIVG + KGLDNLTSFQQERVKKAVCVHADFVYQYGPYLDMPVSGYSAGSISLSFKSVEAGGIKT + SEDVTNLLKPTGLTDRRL" + gene complement(3838694..3838927) + /locus_tag="Ccel_3290" + CDS complement(3838694..3838927) + /locus_tag="Ccel_3290" + /inference="similar to AA sequence:KEGG:CPF_0957" + /note="KEGG: cpf:CPF_0957 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77579.1" + /translation="MKATKGNKVYSVDETNKAFYVGQGYDIVDDDGNVIEQGVGKKVD + LKKYNDLKEKLTKLVKENKDLKDELKKAKKDAQ" + gene complement(3838939..3839844) + /locus_tag="Ccel_3291" + CDS complement(3838939..3839844) + /locus_tag="Ccel_3291" + /inference="similar to AA sequence:KEGG:CPF_0956" + /note="KEGG: cpf:CPF_0956 putative phage major capsid + protein" + /codon_start=1 + /transl_table=11 + /product="putative phage major capsid protein" + /protein_id="ACL77580.1" + /translation="MPVYSYAEQFDGQLQQKYARELTSYALTQSNQGIKFINAQTIKL + PRLTLSGYKDHNRGGMGFNTGSISNDWEPKKLEHDRDVEFAIDPMDIDETKLVIEMAN + IQNVFETEQAIPEKDSYRYSKLYAEAKTYAADGAVIDNTALTVSNVLDWFDTQMEKMD + DEGVPSEGRILYVTPAINKLLKNASGLTRNIDVNSNNGNIDRRVYSLDDVTIVKVPSA + RLKTKYDFTNGCVPAADAKQINMILIHPSCVVSRDKYAYMKVFTPGTDSRTADKYVYQ + NRYYTDTFLIQNKACGVAINAEAEL" + gene complement(3839859..3840440) + /locus_tag="Ccel_3292" + CDS complement(3839859..3840440) + /locus_tag="Ccel_3292" + /inference="protein motif:PFAM:PF06810" + /note="PFAM: minor structural GP20 protein; + KEGG: cno:NT01CX_2174 scaffold protein" + /codon_start=1 + /transl_table=11 + /product="minor structural GP20 protein" + /protein_id="ACL77581.1" + /db_xref="InterPro:IPR009636" + /translation="MEWLKKLIEAAQIKDGKLDVGALMAQINTEFPKNAVPKDTYNAL + AETKKQLEKDVSTRDKQIEDLKKVDAAGLQAEIEKLQQENKEAADKYAADMKDITLTN + AIKMAINGKVHDEGIVSGLFDKSKLVVDGDKVVGLDDQIKGLKESKAFLFKEEDPSGS + QKPGFKVGTDGSKGAGADVDTQLASIFGNTTTK" + gene complement(3840590..3840823) + /locus_tag="Ccel_3293" + CDS complement(3840590..3840823) + /locus_tag="Ccel_3293" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77582.1" + /translation="MLIHINGNIYEGDRQYADAILKVAKEKYKKERSNAIYGVEKNDM + LEMKRETFLSSKLMQEKAAEYRKAGFKVYSVSR" + gene complement(3840881..3841099) + /locus_tag="Ccel_3294" + CDS complement(3840881..3841099) + /locus_tag="Ccel_3294" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77583.1" + /translation="MGEDFYFAYDYDGTKGTASRLYRRIDDQFQRFIPQKRLWESAPE + QCCIYIGEDTFYDEITEEQAKEIIKTWN" + gene complement(3841104..3843035) + /locus_tag="Ccel_3295" + CDS complement(3841104..3843035) + /locus_tag="Ccel_3295" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cpf:CPF_0952 putative phage minor capsid + protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77584.1" + /translation="MATEKYDIRKIFDDMALDLIRSQKRTFLRHQGEQLKEGFQWEQW + QLGKLRELNKYRQTNKKIIGGYSDEIMSLIDETLKSSFRKGENNVEKTISEIKNFVID + TPDSGIDTDNLKKYTPDEIAALREAETIIEEAAKLPKATGTDTFFSVNRKKLKALQKA + VKKDMGKAQNAVLRKMDDVYRQTIYKAQVYMGSGATTLDQAIDMATKDFLEQGINCIQ + YKDGKMVNVASWAEMALRTASHRATMLGEGSKMDEWDMHLVVITAHGNTCELCLPWQG + KILIDDVYSSGKPDGVHTLLSTAIDEGLFHPNCRHSRAIYFEGITELPKPPVNDEKAV + ERYQAEQKQRGIERKIRKYKRLEEGSVDPQNQAKYGAKVQEWQGALRQHLKDNTYLRR + DPSKVQTDIRSVNQINGARDKKQFSRYKQILGNRVPNSLEDFQYLKYNESDKWAVIKA + DYRKLNAYNKIIENEPAITNDLKEVSEITGVNMVGLEYRVKTKESFLRKVNTDSLHSL + DTKVITDTIASTNDVIRYTYQDNPERLVESYRQVKGNLLGKGYSEVKVKNFWMDKRNP + YNGVNCCYMSPQGQKFEVQFHTPESFALKDGELHKLYEEARDDSILPQRKAEIITEMF + KLSAKLTRPQGIETIKPRR" + gene complement(3843016..3844518) + /locus_tag="Ccel_3296" + CDS complement(3843016..3844518) + /locus_tag="Ccel_3296" + /inference="similar to AA sequence:KEGG:CPF_0951" + /note="KEGG: cpf:CPF_0951 putative phage minor capsid + protein" + /codon_start=1 + /transl_table=11 + /product="putative phage minor capsid protein" + /protein_id="ACL77585.1" + /translation="MGWIRDMVTKAAIKILKIQPALENRNITVREPFSFETNALRNRL + WYRGEPSELEQFFKQTAFDSVSKGRFWAAVPSVGLGIRKIHSGLPSMIADRLSDIVIA + DLDGIELKNQAETDLWDEISKDNKANKLLGEAITETLVEGDGAFKITIDTDVSQYPLI + EFYSGERVDYTYMRGRLQEVIFYTDYAVKAKEYRLAETYGKGYIRYKLFDSYGKEVAL + TMVPETAALKDITYTGDFIMAVPLMFFKSPKWQGRGKSLFDGGKSDDFDALDEVISQW + IDAIRSGRVQKYIPEDLIPKNPNTGELLKPNAFDNQFIKIGSSLAEDAKTQISTVQPQ + IMFEAFVASYASILDVCLQGIISPSTLGIDLKKTDNAEAQREKEKATLYTRGKIIDAL + NEVIPQLVAIVLKVYDLMQEHTAGEYEASVAFGEYASPSFDTVVETVGKAKSYGIMSL + ERCVEELYGDTWTDEDKAKEVARLKSEQAPAFDEPSVAGQDGEIDGDGEV" + gene complement(3844522..3845874) + /locus_tag="Ccel_3297" + CDS complement(3844522..3845874) + /locus_tag="Ccel_3297" + /inference="similar to AA sequence:KEGG:CPF_0949" + /note="KEGG: cpf:CPF_0949 putative phage terminase, large + subunit" + /codon_start=1 + /transl_table=11 + /product="putative phage terminase, large subunit" + /protein_id="ACL77586.1" + /translation="MSQENLILSDKYKAFIRHSAPVEFLEGTTAAGKTTVGIFKFMLL + VAESKKKYHIIAAKDTGTAEKNIINKDLGIIDDFGVLTEYNGNGTKDEKIPHILYHTS + KGDKIIYVMGYGDKKKWQKALGGQYGCLYIDEINTADIDFVRESFMRADYVMATLNPD + DPNLPVYKEYINCSRPLPEYKNDAPPEINSMLKEEPKPGWVHWFFSFIHNLGLSKEKI + DQIIMNVPKGTKLYKNKIQGLRGRATGLIFGNFTRGKNVITREQAKKYKFIYFSAGLD + TSYSQESPDTFAFIYIGITDKRKVVVLDEEVYNNANLDIPLAPSDIAPRFFKFLEKNR + KVWGFARDTFVDSADQATITELNKYKREHACLYNFLNAYKKITIIDRIHLQLGWINCN + GSVFYEVVETCKNHIGELESYSWKEDKYEPEDANDHTINASQYAWIPFKTKIGDYKEA + " + gene complement(3845877..3846389) + /locus_tag="Ccel_3298" + CDS complement(3845877..3846389) + /locus_tag="Ccel_3298" + /inference="protein motif:PFAM:PF03592" + /note="PFAM: Terminase small subunit; + KEGG: bpt:Bpet0975 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Terminase small subunit" + /protein_id="ACL77587.1" + /db_xref="InterPro:IPR005335" + /translation="MAKLTAKQEMFIQEYLIDLNATQAAIRAGYSTKTANEIGAENLT + KPSIRTRIDEALAERSRRLGISQDRVVNELAKIAFVNPADVMDFDNATVSSTAKKDDT + AAILSVKVKKSFSDTGETTEREVRMNDKVKSLELLGKHLGMFKDKVEISVLDKEKSKL + DSVIEQMRGG" + gene complement(3846443..3846739) + /locus_tag="Ccel_3299" + CDS complement(3846443..3846739) + /locus_tag="Ccel_3299" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77588.1" + /translation="MEIERGVREGMKQEEKVIFEEARTSLFSEFDAEISEVETEIHDL + KFNNAKKQLMLDIENASGDEYTNLNSEFYSQLDALEKKLRLLNVKRQKLERILF" + gene complement(3846891..3847319) + /locus_tag="Ccel_3300" + CDS complement(3846891..3847319) + /locus_tag="Ccel_3300" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL77589.1" + /translation="MKKAELNEILKLKKEVKQLSQKLQELNYGDDETVVSDKVRGSMS + EYPYSARSFNLVGLEQMSDKCIQKRNEIGKKISDKYYELNCRINKAYDYILGIDDSEI + RQILQYKYIDGLSSEEIGEYLGWTSRTIERRLEKWYKSCR" + gene complement(3847458..3847877) + /locus_tag="Ccel_3301" + CDS complement(3847458..3847877) + /locus_tag="Ccel_3301" + /inference="similar to AA sequence:KEGG:CLK_A0265" + /note="KEGG: cbl:CLK_A0265 phage protein" + /codon_start=1 + /transl_table=11 + /product="phage protein" + /protein_id="ACL77590.1" + /translation="MKHDNWNNGLWMYNFGGKEIWNEEEYFDTKEEAIGMGRIEAIKR + GEDSYQVGQIITFTPSLDADWAIEQIAENAMDNCGEVANDYLDCVPKEETDRLEELLN + EALTKWLDETKNHPGFFYIDDISEHVVEEWQRSESDE" + gene complement(3847918..3848328) + /locus_tag="Ccel_3302" + CDS complement(3847918..3848328) + /locus_tag="Ccel_3302" + /inference="protein motif:PFAM:PF05866" + /note="PFAM: endodeoxyribonuclease RusA; + KEGG: spj:MGAS2096_Spy0569 phage protein" + /codon_start=1 + /transl_table=11 + /product="endodeoxyribonuclease RusA" + /protein_id="ACL77591.1" + /db_xref="InterPro:IPR008822" + /translation="MFPVKTEFFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAAR + AKLQAHLAKYVPDKPYTGPVRLMVKWCFPVTGKHKNGEYKTSKPDTDNLQKLLKDVMT + DLRFWKDDALVASEIVEKFWAEVPGIFIAIEELS" + gene complement(3848418..3848687) + /locus_tag="Ccel_3303" + CDS complement(3848418..3848687) + /locus_tag="Ccel_3303" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77592.1" + /translation="MQNKADMILDTFVGIKLNTMSTVPIITVYKKPKDYPDKYIARLW + DINNKPTRFVVVADTLENIRRLVPKNMTCIPPSEKDDPVIVEVYI" + gene complement(3849048..3851273) + /locus_tag="Ccel_3304" + CDS complement(3849048..3851273) + /locus_tag="Ccel_3304" + /inference="protein motif:PFAM:PF08707" + /note="PFAM: Primase 2; + KEGG: spj:MGAS2096_Spy0567 ATPase" + /codon_start=1 + /transl_table=11 + /product="Primase 2" + /protein_id="ACL77593.1" + /db_xref="InterPro:IPR014819" + /translation="MDNNKHDLRELLQYIHPASLDYQEWLSVGMALKEDGYTAADWDT + WSRQDTKRYHSGECFKKWDTFRGTSSPVTAGTIVQMAKDNGWLPKRNESGHELNWEDS + IGSKDDLVVINKGWLEGKEVIEPEAWDPVGQLVSYLEILFEASENVGYVTESWFNEEK + QKYLPTKGAWDRTAGELIQQLNKCNGDIGSVIGDYKNEAGAWIRFNPLDGKGIKNENV + TDYRYALVESDDTEIEKQNAIIRELELPVACLVHSGGKSLHAIVKIEAGSYEEYRKRV + DYLYNVCRKNGLKIDTQNKNPSRLSRMPGIERNGQKQFLVDTNIGKESWKEWQEWIES + INDDLPDPESLTGIWDNLPELSPPLINGVLRQGHKMLIAGPSKAGKSYALIELTCAIA + EGRKWFDWSCTQGKVMYVNLELDRASCLHRFKDVYQALGWQANNLDNIDIWNLRGKSV + PMDKLAPKLIRRAAKKNYIAIIIDPIYKVITGDENSADQMAHFCNQFDLVCTELGCAV + IYCHHHSKGSQGGKRSMDRASGSGVFSRDPDALLDLIELDLTDSLLKQEENKAVCKVC + DDWLKMCNVDILAELSQDDLCSEKAMMEASKRLLKAETYQAMQIAVEAARKAVQQRTA + WRIEGTLREFPKFPPVNLWFNYPVHIVDSVGSLKDVETEGEAPPWKKNFAKKKSPEAR + KKERNMSLETAFEACSMNGAVTVQAMAEYMGITDKSIRNRIKEHGGYWIDGSEIGKKS + K" + gene complement(3851290..3852438) + /locus_tag="Ccel_3305" + CDS complement(3851290..3852438) + /locus_tag="Ccel_3305" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: bce:BC1869 phage protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77594.1" + /translation="MGMGRKWTKEDETYLSDNWGHIPVPGLCKQLNRTKSAILIRVQR + LGLPPFLDSGEYITLNQLIQAVTGSDTSYSYKMKSWVENRGLPVHNKRNSQSTWRVVY + IDEFWKWAEKNRSFIDFSKMEPMILGKEPHWLAEQRRRDFISNANYRKSPWTPHEDGL + LKDYLKQFKYGYAELSKMLGRSAGAIQRRICDLGLKERPVKADNHKSWEEWHFQTLAD + MIRAGYSYGAIGETLGKSEKAVRGRVYDFYRTENADKVRVMLGDGPWGTGRPELTVFD + SKRKSPVKNDLTRLLELLLIRRNQLNFDGYWQKDMCMNWHDIRGCTAGQGNCDECTEF + LRIRPQYCKRCGATFFSRQISDICDSCKKARKKQHQRKWAVLRNLYRA" + gene complement(3852439..3853788) + /locus_tag="Ccel_3306" + CDS complement(3852439..3853788) + /locus_tag="Ccel_3306" + /inference="protein motif:TFAM:TIGR00180" + /note="TIGRFAM: parB-like partition protein; + PFAM: ParB domain protein nuclease; + KEGG: sha:SH2634 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="parB-like partition protein" + /protein_id="ACL77595.1" + /db_xref="InterPro:IPR001589" + /db_xref="InterPro:IPR003115" + /db_xref="InterPro:IPR004437" + /translation="MIQNININKLKNHPKNPRKELGDLTELAESIKTYGVFQNLTVVP + WFCFETGVGADDPKQQEEMGYFVVIGNRRLAAAKLAGLEELPCVISDMDYKTQLATML + LENMQRNDLTIYEQAQGFQMMLDLGESLNDISEKTGLSETTVRRRVKLLEFDSDKFKK + SVERGGTLMDYMELDKIQDIKLRNNVLDKIGTSNFKYELQAAIDKEKREKNKALWVAE + LNKFATQVKNSNGLQQVNAYYNLSQKPEITKPTDADTVEYFFFVSEYGSITLYKKSEN + NSRSTSDNSAYEEKQKRISEQRAALDEISKRAYQLRRAFVLDISNAKAKKNIGTIIQY + SLWAMLDDYNYLDYEEFSEIIGMENDDENDEKDLYFATISEHVSTQPERNLLIATYLA + LDKERETYYGWNNQYMDNGTLNTVYNLLEKLGYEMSDEEKSMRDGTHELFENSEAEK" + gene complement(3853810..3855420) + /locus_tag="Ccel_3307" + CDS complement(3853810..3855420) + /locus_tag="Ccel_3307" + /inference="protein motif:PFAM:PF04851" + /note="PFAM: helicase domain protein; type III restriction + protein res subunit; DEAD/DEAH box helicase domain + protein; + SMART: DEAD-like helicases; + KEGG: spj:MGAS2096_Spy0565 DNA/RNA helicase" + /codon_start=1 + /transl_table=11 + /product="type III restriction protein res subunit" + /protein_id="ACL77596.1" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR006935" + /db_xref="InterPro:IPR011545" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MELRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKTIVFSKITE + ECVRNGERVLILAHRGELLDQAADKLKKATNLGCATEKAEESCIGSWFRVVVGSVQSL + MREKRLNQFPKDYFNTIIIDEAHHCLSDGYQRVLSHFNEAKVLGVTATPDRGDMRNLG + QFFESLAYEYTLPRAIKEGFLCPIKAQTIPLKLDLSGVSVQAGDFKNGDLGNALEPYL + ESIADEMLKCCTDHKTVVFLPLIKTSQKFKDILNKKGFRAAEVNGNSQDREQVLADFD + SGKYNVICNSMLLTEGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRLHSGKDHLLLLD + FLWHTERHELCHPAALICESEEVAKKMTENIEAAGCPVDIEAAEKQAADDVVAQREEA + LAKKLAEMKNRKRKLVDPLQFEMSIQAEDLASYVPAFGWEMGPPSDKQIKTLEKLGIF + PDEIESAGKATKLLERLDKRRNEGLTTPKQIRFLEGRGFQHVGTWQFEGAKSLIDRIA + ANGWRVPNEINPSEYKPTQIEQPLGWEI" + gene complement(3855424..3855906) + /locus_tag="Ccel_3308" + CDS complement(3855424..3855906) + /locus_tag="Ccel_3308" + /inference="similar to AA sequence:KEGG:MGAS2096_Spy0564" + /note="KEGG: spj:MGAS2096_Spy0564 phage protein" + /codon_start=1 + /transl_table=11 + /product="phage protein" + /protein_id="ACL77597.1" + /translation="MNNERELGWNEVIENDSPDFITLPEGDYDFVVTEFERARHNGSE + KLPACNKAVIHIRIEAPEGVTTIKHNLFLHTKTEGMLCAFFTAIGQRKKGERATMNWN + AVVGSKGRCKVGIRTWKTDDGREMTSNDIKRFYDPETDKVPGSISQPAAQKTFEAGRF + " + gene complement(3855932..3857098) + /locus_tag="Ccel_3309" + CDS complement(3855932..3857098) + /locus_tag="Ccel_3309" + /inference="similar to AA sequence:KEGG:MGAS2096_Spy0561" + /note="KEGG: spj:MGAS2096_Spy0561 phage protein" + /codon_start=1 + /transl_table=11 + /product="phage protein" + /protein_id="ACL77598.1" + /translation="MEIARGVIKSAQKIVVYGPEGIGKSTFAAMFPGALFIDTEGSTK + HMDVARLPKPYSWQMLLDDVNYVYVHPEVCNTLVIDTADWAEKLCSEDLCAKSQKAGI + EDFGYGKGYVYLAEDFGKLLNTLEEIVNMGVNVVFTAHAQMRKFEQPDEMGAYDRWEM + KLQKKTAPLLKEWADAVLFVNYQTYVVNVDGQGTAKGKNKPQGGRRVMYTSHHPCWDA + KNRYNLPPDVDFDYSVIAQFIPVKGSAAPVEYKTKVQPVESPYPSTATTQPVQQQSVP + SPAVSQNKPVNEPTQQQLQTDLAQQTPPVKQATEIKTDEDLSGIPKALASLMKEKQVT + LKEIQGAVSYKGYFPADTPFQAYPDEFVSGVLIAAWPQVFNVIELLRSGEEAPF" + gene complement(3857098..3858399) + /locus_tag="Ccel_3310" + CDS complement(3857098..3858399) + /locus_tag="Ccel_3310" + /inference="protein motif:PFAM:PF02463" + /note="PFAM: SMC domain protein; + KEGG: spj:MGAS2096_Spy0560 chromosome segregation ATPases" + /codon_start=1 + /transl_table=11 + /product="SMC domain protein" + /protein_id="ACL77599.1" + /db_xref="InterPro:IPR003395" + /translation="MDTIKINKLEIENVKRVKAVKIEPNSNGLTIVGGKNGQGKTSVI + DSIAWALGGEKFRPSSATREGSVIPPTLHIVLSNGLVVERKGKNSDLKVTDPTGQKAG + QQLLNEFVEQLALDLPRFVQAGSREKAEILLKIIGVGDKLTELDKQEKELYNRRLTIG + QIADQKAKFAKEQPYYKDAPKELVSASELIRQQQEILTRNGENNKKRQNLKFIQDQRQ + RLIEQENELIARLAEVRQKLELNSKDLEIAEKSALDLYDESTAELEQNIANIEQINRK + VRANLDKDKAEEDALQYKNQYNALSTQIENIRRSKIDLLKNANLPLPGLSVVDGELTY + NDKKWDCMSGSEQLKVSTAIVRKLNPKCGFVLMDKLEQMDLDTLKEFGQWLEQEGLQV + IATRVSTGEECSIIIEDGYSESEKPRESIIDNSQKWKAGEF" + gene complement(3858454..3858741) + /locus_tag="Ccel_3311" + CDS complement(3858454..3858741) + /locus_tag="Ccel_3311" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77600.1" + /translation="MKAACSKCGQPWNVSVHKKLNKPYVCPRCSKVKKMVLTAVGFII + CCVAVPKLNRIVNVQRGYSAGGGEVLIPLLYLVVVGFIKTVLDYKKENAHQ" + gene complement(3858741..3858986) + /locus_tag="Ccel_3312" + CDS complement(3858741..3858986) + /locus_tag="Ccel_3312" + /inference="protein motif:TFAM:TIGR01439" + /note="TIGRFAM: transcriptional regulator, AbrB family; + PFAM: SpoVT/AbrB domain protein; + KEGG: cth:Cthe_2100 AbrB family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AbrB family" + /protein_id="ACL77601.1" + /db_xref="InterPro:IPR006339" + /db_xref="InterPro:IPR007159" + /translation="MKATGIVRKVDELGRVVLPIELRRTLDIEEKDSLEILVDEETIV + LKKYEPACVFCGNAKDVIVYKGKNICPDCMKELKGAK" + gene complement(3858955..3859155) + /locus_tag="Ccel_3313" + CDS complement(3858955..3859155) + /locus_tag="Ccel_3313" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77602.1" + /translation="MKHGRKLTVRLKEFLQDRDIKANQYLQVKNMPNELHFVHKISGR + IRIFIKREDGNWYESNGNCKKS" + gene complement(3859160..3859414) + /locus_tag="Ccel_3314" + CDS complement(3859160..3859414) + /locus_tag="Ccel_3314" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77603.1" + /translation="MLKKWFKRFQWKISRWWYREKLWCGWWYCERCEKMHSPFKNKYE + FSEEGNYECSQGVYDLPVPTAYEGDPDYFYSLAKNLHKVG" + gene complement(3859487..3859693) + /locus_tag="Ccel_3315" + CDS complement(3859487..3859693) + /locus_tag="Ccel_3315" + /inference="similar to AA sequence:KEGG:BAS0421" + /note="KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding + protein, putative" + /codon_start=1 + /transl_table=11 + /product="prophage LambdaBa04, DNA binding protein, + putative" + /protein_id="ACL77604.1" + /translation="MSNYFNFPEILYPKHVQEILNWRKDQVYNLFRSKNFPSEKVGNK + YFIPKDRFWAWMGKQIPLESQKGA" + gene complement(3859716..3859898) + /locus_tag="Ccel_3316" + CDS complement(3859716..3859898) + /locus_tag="Ccel_3316" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; + KEGG: ckl:CKL_1947 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77605.1" + /db_xref="InterPro:IPR001387" + /translation="MKKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETL + RELAKALDTSVDQLLS" + gene 3860095..3860940 + /locus_tag="Ccel_3317" + CDS 3860095..3860940 + /locus_tag="Ccel_3317" + /inference="protein motif:PFAM:PF01381" + /note="PFAM: helix-turn-helix domain protein; peptidase + S24 and S26 domain protein; + KEGG: bce:BC3704 LexA repressor" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77606.1" + /db_xref="InterPro:IPR001387" + /db_xref="InterPro:IPR011056" + /translation="MTLGENIRELRKKKGLTIEALADELNSSYSTIGMYELDKRKPDY + DMLCKFAEYFNVTVDYLLGVKKKSILSASDLYKEFIEQKVPIEKLADNIGISADTLFK + ILKSEEGATEADYYRLCKWLGYSEEKAEEFYLRNSPLTNKSFRFTQNLDFIPVPVLGL + IRAGQPAFAEENNEGYYPTDRQFISDDHEYFYLRIKGDSMDKEFKEGSLVLVQIQSTL + ESGEIGVVLINGFDATVKKVFIRDNLITLMPQSNNEDHQPQTYDTVKEEIKILGKVVL + AVKKY" + gene 3860960..3862231 + /locus_tag="Ccel_3318" + CDS 3860960..3862231 + /locus_tag="Ccel_3318" + /inference="protein motif:PFAM:PF00589" + /note="PFAM: integrase family protein; + KEGG: bce:BC2556 DNA integration/recombination/invertion + protein" + /codon_start=1 + /transl_table=11 + /product="integrase family protein" + /protein_id="ACL77607.1" + /db_xref="InterPro:IPR002104" + /translation="MQKSNDDTSQKKKTRRARNEGSVRWIEEKQLWQARYPIGLKETI + DKNGKPCCKTVYKSIYGKKKTGPGGVMAEMRNALAALGKGTYIDPSDKTLIVWCQEWY + ETYKEPKLKTNTRLKYETSITRLKRYSIADMQLKNLSLELIQKDYNRMAKDGLSEETI + KATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKALNDTQLDAFLYQI + GRRSKYFMYAFFMLNTGLRPGEALALTRSDIDFTTNKIKVTKTYIEKLKKVQNSTKTA + SSRRKVPIPSEMISLLKEYMLQQPKKEPTDPLFQTATGKRPSQGYLRKRFKYAGASAG + CEWVNLHTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVHFIDNIVEESVQVL + NSDIPENLPTKSRKGEKKAKKVIDIKKVSSH" + gene complement(3862355..3862430) + /locus_tag="Ccel_R0076" + /note="tRNA-Thr2" + tRNA complement(3862355..3862430) + /locus_tag="Ccel_R0076" + /product="tRNA-Thr" + gene complement(3862436..3862509) + /locus_tag="Ccel_R0077" + /note="tRNA-Gly2" + tRNA complement(3862436..3862509) + /locus_tag="Ccel_R0077" + /product="tRNA-Gly" + gene complement(3862595..3863239) + /locus_tag="Ccel_3319" + CDS complement(3862595..3863239) + /locus_tag="Ccel_3319" + /inference="protein motif:TFAM:TIGR02859" + /note="TIGRFAM: RNA polymerase sigma-H factor; RNA + polymerase sigma factor, sigma-70 family; + PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 + type 2; + KEGG: cth:Cthe_2059 RNA polymerase factor sigma-70" + /codon_start=1 + /transl_table=11 + /product="RNA polymerase, sigma-24 subunit, ECF subfamily" + /protein_id="ACL77608.1" + /db_xref="InterPro:IPR000792" + /db_xref="InterPro:IPR000943" + /db_xref="InterPro:IPR007627" + /db_xref="InterPro:IPR013249" + /db_xref="InterPro:IPR014218" + /db_xref="InterPro:IPR014284" + /translation="MKTNLKAEVYQTYSGMVDEDVILEAKAGNTMALEYLINKYKSFV + RAKARTYFLIGADREDIIQEGMIGLFKAIRDYKGDKLSSFRAFAELCITRQIITAIKT + ATRQKHIPLNSYVSLNKPIFDEESDRTLMDIISEESISDPEELIINREEFKGIESKMG + EILSSLEWEVLTSYLDGKSYQEIAEDLDRHVKSIDNALQRVKRKLEKYLEEQKA" + gene complement(3863373..3864320) + /locus_tag="Ccel_3320" + CDS complement(3863373..3864320) + /locus_tag="Ccel_3320" + /inference="protein motif:TFAM:TIGR00186" + /note="TIGRFAM: RNA methyltransferase, TrmH family, group + 3; + PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose + methyltransferase substrate binding; + KEGG: cth:Cthe_2060 RNA methyltransferase" + /codon_start=1 + /transl_table=11 + /product="RNA methyltransferase, TrmH family, group 3" + /protein_id="ACL77609.1" + /db_xref="InterPro:IPR001537" + /db_xref="InterPro:IPR004441" + /db_xref="InterPro:IPR013123" + /translation="MAQSRNKRPGSARYDKKGPSSGFGRKSFTGDDKKRSKFGDRKGE + TAGRGPYMAPAKDLGFENIEKDSAVPEESDKLEGRNSVMEALKANRTINKLFIAKGEK + EGSIRQIIALARQKGIITTEVDKIILDGMSTTRSHQGVIAYVAVKDYVEVDDILAVAQ + ENGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAGAVE + YVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPIALVVGSEGEGMGKL + VREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQRGK" + gene complement(3864352..3864771) + /locus_tag="Ccel_3321" + CDS complement(3864352..3864771) + /locus_tag="Ccel_3321" + /inference="protein motif:PFAM:PF00636" + /note="PFAM: ribonuclease III; + KEGG: cth:Cthe_2061 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ribonuclease III" + /protein_id="ACL77610.1" + /db_xref="InterPro:IPR000999" + /translation="MYEEIIQNMRKDFDIKPMEVMNLQPLVLAYIGDAVYEMYIRTML + VVKNKSNVNMLHKMSVKYVKAKSQADILHRVNDRLTEDEHDIVRRGRNAKSATVPKHA + DVTDYRYSTGFEALIGYLYLTNSYERLMEILRLAVEE" + gene complement(3865074..3865835) + /locus_tag="Ccel_3322" + CDS complement(3865074..3865835) + /locus_tag="Ccel_3322" + /inference="protein motif:TFAM:TIGR00633" + /note="TIGRFAM: exodeoxyribonuclease III; + exodeoxyribonuclease III Xth; + PFAM: Endonuclease/exonuclease/phosphatase; + KEGG: cth:Cthe_0458 exodeoxyribonuclease III Xth" + /codon_start=1 + /transl_table=11 + /product="exodeoxyribonuclease III Xth" + /protein_id="ACL77611.1" + /db_xref="InterPro:IPR000097" + /db_xref="InterPro:IPR004808" + /db_xref="InterPro:IPR005135" + /translation="MTKLVSWNVNGLRACIGKGFWDFFKEVDSDIFCIQETKLQEGQV + ELEQELEGYEQYWNYAVKKGYSGTAIFTKIKPVSSSCGIGIEEHDNEGRVITLEFDQY + FLVNVYTPNSKRELERLEYRMKWEDDFRIYLKQLEETKPVIICGDMNVAHKEIDIKNP + RSNKRSAGFTMEEREKFSELLEQGFVDSYRTLYPDKTGAYTWWSYMFKARERNVGWRI + DYFCVSEVLKNIIEEADIYSEIMGSDHCPVGLTIK" + gene complement(3865901..3866734) + /locus_tag="Ccel_3323" + CDS complement(3865901..3866734) + /locus_tag="Ccel_3323" + /inference="protein motif:PFAM:PF00877" + /note="PFAM: NLP/P60 protein; SH3 type 3 domain protein; + KEGG: cpy:Cphy_1440 peptidoglycan binding + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="NLP/P60 protein" + /protein_id="ACL77612.1" + /db_xref="InterPro:IPR000064" + /db_xref="InterPro:IPR013247" + /translation="MNSLQEFMGVIRSKLGSGYVYGGQSDNPLTKEALIELVKRFGKS + HYYFNSYSAERWLGKEYYDCSGLVVYTLRKMGLIENNEDYTAQGIFSQLCEHVVLQDL + QAGDLCFNKTGSGIVHVGVYMGNSRVVHARGTFYGVVETQVFSSFNTFGRLKFFANEK + PEAVIKPEKSIKKAKIQTMVNEQPFDNTAGIGSINAGSLVNVTGKTDNGWYQINLNGK + TGFIQALTLEDYSELANAIAFLSQSAGIDNVYWYNHAADIKWLDVCFIKIAKAFGANL + N" + gene complement(3866867..3868252) + /locus_tag="Ccel_3324" + CDS complement(3866867..3868252) + /locus_tag="Ccel_3324" + /inference="protein motif:TFAM:TIGR00435" + /note="TIGRFAM: cysteinyl-tRNA synthetase; + PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA + synthetase class Ia; + KEGG: dth:DICTH_1585 cysteinyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="cysteinyl-tRNA synthetase" + /protein_id="ACL77613.1" + /db_xref="InterPro:IPR002308" + /db_xref="InterPro:IPR015413" + /db_xref="InterPro:IPR015803" + /translation="MKVFNTLSRQKEEFKPINDKEVRIYSCGPTVYNYAHIGNLRTYV + FMDILRRVLQYNGYSLKHVMNITDVGHLVSDEDEGEDKMVKGAREQKKTPWEIAEYYT + SVFMKDIRALNIQVPEIVPKATEHIPEMLEFVHGLVDSGYGYETSDGIYFDIQKFEGY + GKLSRANLEDQIAGARVEVNEEKRHPADFALWKKAPKEHIMQWPSEWGMGYPGWHIEC + SAMGRKYLGDTFDIHTGGVDHIPVHHENEIAQSEALLKKSAVNYWMHGEFMMVNNGKM + SKSLGNTYTIDNLKEKGYDPMAFRYMCLNAHYRNKLNFTWDVMQSAQVSYDRFVEGVL + SHKDGKEQVDSAVVKEFLSDFEDSINDDLNIPKALGVAWNAIRYGKKSQAIYELLTKM + NSIFGFILDKKKESTSEPEISPEIHRLLEERQEARAGKNWKRSDEIRDELKTMGYAVE + DTANGPKLKLL" + gene complement(3868275..3869006) + /locus_tag="Ccel_3325" + CDS complement(3868275..3869006) + /locus_tag="Ccel_3325" + /inference="protein motif:TFAM:TIGR01172" + /note="TIGRFAM: serine O-acetyltransferase; + KEGG: cth:Cthe_2066 serine O-acetyltransferase" + /codon_start=1 + /transl_table=11 + /product="serine O-acetyltransferase" + /protein_id="ACL77614.1" + /db_xref="InterPro:IPR001451" + /db_xref="InterPro:IPR005881" + /translation="MKKGLMYDAKSIAGRDPAAKSTLEVILLYPGFHALVFHRIAHWF + YKRKRFFIARFISQFGRHFTGIEIHPGAKIGSGLFIDHGMGVVIGESAEIGDNCTIYH + GVTLGGTGKDKGRKRHPTVGNNVLIGAGAKVLGPFNIGDNSTIGANTFVSFEVEPYST + VVGVKGRTVKKAGKRIDCPSESLDQIHMPDPLSQEICKLASRLQHCENLLCGSGKVAG + GGINSEKGDYARPLNNKDDNNTINK" + gene complement(3869191..3870069) + /locus_tag="Ccel_3326" + CDS complement(3869191..3870069) + /locus_tag="Ccel_3326" + /inference="similar to AA sequence:KEGG:CAC2342" + /note="KEGG: cac:CAC2342 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77615.1" + /translation="MGQDNDRVVSGLICERDLSRIREAVGVHAEKIYDSCKDRDCIEN + ARVYFDRLTDAEIRAINDSFNVKIRAAEVTDVITDIEAVPFKRGFYAVDVKLIIAVTL + DFFIRITMGGSERIQITTVEGNISYDKKIILFGSEGGVKIFKSLYQPKALDIQSNSEL + QQSNLPFCKIEVAEPIPLSAKIRSLLDKLDDDREMERGSGPQPGPVLTKRVYVTVGLF + SIVSLARVVPLLIPAFNFSYPHKHCPAGTDDNPCELFDTFDFPYDEFYPPQKFDFPGA + TEQERLLLEDTNECKE" + gene 3870210..3871646 + /locus_tag="Ccel_3327" + CDS 3870210..3871646 + /locus_tag="Ccel_3327" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: amt:Amet_2448 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77616.1" + /translation="MYNPSSKQFVFKDSEGKLWNFYYDTSQGICYSVFSKRMAWSEPR + VVQPEAYEQFYAEIDEKDCFHIIYQDKKGNIIYCLMQQNETVKALPVLTSKSHSVFNK + HLSLIVANSCVHIFFIIEHNGIYMLSYQTITDGVPVAPKKVDNITVLPNPYMVVYDLH + DDIYVFYHISDGKNNQIGYKKYSTVNKTWSEYSQITMFSSNSQNPRLVVDRNGIFHIC + YVRKQDKQFQLVYQQKIPDRNMWTSESILAASSTPITNFCILSVKSSLVVYYIKDEAL + HSFISNDSGASFTKSSKGVSLSRQHICVRYKSNSPYEHIQADEIPASFVNGFKLMFIH + DSVDLESGLNTDEMRAIITTELKFLKRQVADLKDAQKIIFNNIKSLETNQQNMERSLL + KEISKIVIGLKPGKPSPELVQANKSTYISEPSNNVKHNNNLYTHSFTNFPKSREEMKR + LFADRVKKKARLLKDFKGVWKIKRKKNK" + gene complement(3872037..3872294) + /locus_tag="Ccel_3328" + CDS complement(3872037..3872294) + /locus_tag="Ccel_3328" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cac:CAC2352 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77617.1" + /translation="MKCIAILESGNYVYKLNSELIKKGYDFEVISTPCSIAKGGCGLC + LKFPEEFLDVIKAEAARINTPVKEIYRVISGFSKNKYERLY" + gene complement(3872391..3873278) + /locus_tag="Ccel_3329" + CDS complement(3872391..3873278) + /locus_tag="Ccel_3329" + /inference="protein motif:PFAM:PF07934" + /note="PFAM: helix-hairpin-helix motif; 8-oxoguanine DNA + glycosylase domain protein; + SMART: HhH-GPD family protein; + KEGG: cth:Cthe_2068 8-oxoguanine DNA glycosylase-like + protein" + /codon_start=1 + /transl_table=11 + /product="8-oxoguanine DNA glycosylase domain protein" + /protein_id="ACL77618.1" + /db_xref="InterPro:IPR000445" + /db_xref="InterPro:IPR003265" + /db_xref="InterPro:IPR012904" + /translation="MEYKGYTLKNEDGNLYVENIKDFNLTHIFDCGQCFRWIRQEDGS + YRGIARGRMVNVSYDNEVFCITNSSEQDFIDIWYEYFDLGTDYSKIKSVLEQDEIMRE + AIKTGWGIRLLKQDFWEMLISFIISANNMIPRIMKTVDALSVLRGKCIDSGRNAYSFP + EIKALAETSLEDIKQCKAGFRCKYIHKTSALMAQGIVTEEILRSMDTAMARKELMILP + GVGPKVADCILLFSGLKYDVFPIDVWVKRVMEELYLKKESSHKEIQEFATKQFGGLTG + YAQQYLFYHARLNKIGMSR" + gene 3873494..3874270 + /locus_tag="Ccel_3330" + CDS 3873494..3874270 + /locus_tag="Ccel_3330" + /inference="similar to AA sequence:KEGG:Cthe_2069" + /note="KEGG: cth:Cthe_2069 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77619.1" + /translation="MKEKIYTIPVSDAFAEDCECPLCVLEKKLEDECIEYALGPSLME + PDMRQETNEKGFCKDHFEAMFNSQANRLGLALMIDTFMQEKNKKLQKIFETRAGSLEK + DAKAGLMKNISNKISSKQTETDKLLQELVGELDKIEHSCTICSKLEHTMGRYIDVIFY + LYFREPDFREIFDSKKGFCLKHLKQLLVSTKKYLNTSETAIFTKKLMDMQITNLERVE + KEVDWFTKKFDYRYNDAPWGNSKDAVSRSIQKIRGNCNLK" + gene complement(3874463..3875383) + /locus_tag="Ccel_3331" + CDS complement(3874463..3875383) + /locus_tag="Ccel_3331" + /inference="protein motif:PFAM:PF04204" + /note="PFAM: homoserine O-succinyltransferase; + KEGG: cth:Cthe_1845 homoserine O-succinyltransferase" + /codon_start=1 + /transl_table=11 + /product="homoserine O-succinyltransferase" + /protein_id="ACL77620.1" + /db_xref="InterPro:IPR005697" + /translation="MPIRIPDNLPAVEILNSENIFVMSEDRAYHQDIRPLKIAILNIM + PTKITTETQLLRLLGNTPIQVEIILLRPASHLSKNTPEEHLETFYKTFDEVQREHFDG + LIITGAPVEQMPFEDVNYWEELKQIMDWSKKNVYSTLHICWGAQAGLYYHYGVPKRDL + PKKVFGVFEHNKIKEHVKLLRGFDDIFFVPHSRHTEVTHEDVAKIDDLEILAESKEAG + VYLVASKDGRHIFATGHSEYDPYTLKFEYERDLEKGLDIEVPKNYFPGDDPAKEPIVR + WRGHGNLLFLNWLNYYVYQETPYDLTNIGK" + gene complement(3875484..3876764) + /locus_tag="Ccel_3332" + CDS complement(3875484..3876764) + /locus_tag="Ccel_3332" + /inference="protein motif:TFAM:TIGR01326" + /note="TIGRFAM: O-acetylhomoserine/O-acetylserine + sulfhydrylase; + PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent + protein; DegT/DnrJ/EryC1/StrS aminotransferase; + KEGG: cth:Cthe_1842 O-acetylhomoserine/O-acetylserine + sulfhydrylase" + /codon_start=1 + /transl_table=11 + /product="O-acetylhomoserine/O-acetylserine sulfhydrylase" + /protein_id="ACL77621.1" + /db_xref="InterPro:IPR000277" + /db_xref="InterPro:IPR000653" + /db_xref="InterPro:IPR006235" + /translation="MNRKLSFDTLQVHAGQEVDPTTRSRAVPIYQTSSYVFKDCDNAA + DLFGLKDSGNIYTRIMNPTTDVFEKRIAALEGGTAALAVASGSSAITYSVLNIAGAGD + EIVAANTLYGGTYNLFAVTLPRYGVNTIFVDPDNIQNFEDAITEKTKALYIESIGNPN + ANLIDIQAVADIAHKHGIPLIVDNTFGSPYLVRPIDFGADVVVHSATKFIGGHGSSIG + GVIIDGGKFDYSAGDKFPGFTTPDESYHGVVYSQLEGVAFITKARVQLLRDTGAAISP + FNSFLFIQGLETLSLRVERHVSNSKKIAEYLEKHSLVEKVNYPSLKGNKYFDLAQKYF + PKGSGSIFTFEIKGGHESAKKFINSLEIFSLLANVADAKSLVIHPASTTHSQLSEDEL + LKSGITPGTVRLSIGIEDPDDLIYDIDQALEKSR" + gene complement(3877003..3878577) + /locus_tag="Ccel_3333" + CDS complement(3877003..3878577) + /locus_tag="Ccel_3333" + /inference="protein motif:PFAM:PF04069" + /note="PFAM: binding-protein-dependent transport systems + inner membrane component; Substrate-binding region of + ABC-type glycine betaine transport system; + KEGG: cbt:CLH_2668 glycine betaine/carnitine/choline + transport system permease protein opucb" + /codon_start=1 + /transl_table=11 + /product="Substrate-binding region of ABC-type glycine + betaine transport system" + /protein_id="ACL77622.1" + /db_xref="InterPro:IPR000515" + /db_xref="InterPro:IPR007210" + /translation="MNFIEYLVQNKTQILNLFVDHIKLTVIAVGFAIILGVPLGILIS + YVKKLNKPVLGFANVVQAIPSMALLGFSIPFLGIGTLPAVVMVILYSLLPIIKNTFTG + IQNINPLTLEAARGIGLTKFQILTKVQIPLALPVIMAGVRISAVTAVGLMTIAAFIGA + GGLGFLVFSGIRTVNNNQILAGAIPACLLALTVDYLVGLIEKMVTPISLQKTKKSKET + LKKEKRYNKIVLAVSGLLTAALIIPTIIPGFGSSTNVIRIAGKDFTEQHILVYMFSDL + IEENTDLNVERKVNLGGTQVCFSALKSGDIDLYFDYSGTAYGDTLKYPPISDMDKVYN + TVKKDFKEKFNIEVLKQMGFNNTYVLAVTKETAQKYNLKTISDMAKVASNLTAGATLE + FVNREDGLLGITKKYNFKFKDTKGLDGSPRYTALINKETSVVDAFSTDGLLKKFDLVP + LEDDKNFFPPYYAIPLVREDILKKYPEIEPLIEQLGGILSNEVMIELNYKVDELQMDP + SVVAREFLIEKGLIKK" + gene complement(3878597..3879727) + /locus_tag="Ccel_3334" + CDS complement(3878597..3879727) + /locus_tag="Ccel_3334" + /inference="protein motif:TFAM:TIGR01186" + /note="KEGG: cbt:CLH_2669 glycine betaine/L-proline ABC + transporter, ATP-binding protein; + TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase + subunit; + PFAM: CBS domain containing protein; ABC transporter + related; + SMART: AAA ATPase" + /codon_start=1 + /transl_table=11 + /product="glycine betaine/L-proline ABC transporter, + ATPase subunit" + /protein_id="ACL77623.1" + /db_xref="InterPro:IPR000644" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR005892" + /db_xref="InterPro:IPR017871" + /translation="MIKFENIFKKYKDTTVLKNISLEVEKGQLVSLIGESGCGKTTTL + KMINRLIKPSSGKIFINGKDIEKRDIIKLRRNMGYVIQQTGLFPHMTIKENIELIPKV + QKKDSEEIRKKTYELLEMVGLEADEFLDRYPSEISGGQQQRVGVARAFATDPEIILMD + EPFSALDPITRISLQDELINIQAIYKKTIVFVTHDMDEAIKISDKICIMKDGEILQYD + TPENILKNPQNEFVSEFVGRNRIWTSPEFIKAKDIMIDTPVTCQSSTTLLGCIERMRV + EKVDSLMVVEEKTKRLLGIVNAKQIQNQRDRTIKVGDIMTTNFLSVLEDDSIIDILKI + VDEKHVSAIPVLNESDRLLGLITKSSLVTTLSQQYLDLENLE" + gene complement(3879866..3880507) + /locus_tag="Ccel_3335" + CDS complement(3879866..3880507) + /locus_tag="Ccel_3335" + /inference="protein motif:PFAM:PF02080" + /note="PFAM: regulatory protein GntR HTH; TrkA-C domain + protein; + KEGG: cbt:CLH_2670 transcriptional regulator, GntR family" + /codon_start=1 + /transl_table=11 + /product="TrkA-C domain protein" + /protein_id="ACL77624.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR006037" + /translation="MDKGVRIINPRYQQIATDIASKIASKYYSVGDKIYARSSIASQY + GVSPETARRAISVLADLGIVETEIGNGVKIKSYEKAVNFVNRYHDIQTVNSLKKDIQG + SMERQTKEFEFFNDCLTKLIEKTDRFRSINPFTPFEIEITQETSCLHQTVSETNFWHN + TTATIVAIKRENKLFLSPGPYSIFLPGDIVYFIGDENCFERVRNFLYPENVEN" + gene complement(3880716..3881774) + /locus_tag="Ccel_3336" + CDS complement(3880716..3881774) + /locus_tag="Ccel_3336" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2383 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77625.1" + /translation="MKKILSIVLSLCLVLSVFAVPVTAASSAKLTSSEMNIIKAYQQT + LETKNLQYVNKYKYSGVSYKMLSIPNGSTAKILTPQYSKSYDSKQKLYTANLKGLLVI + SSKTKLSVSSISCGVYLKTKNKKTYAYNAVATTTKAIEVKNLTSSQKNEVKKYLSSKY + GDKTANSLMNPSTAIGSINNPVPLNQKYTWSETKSFLDDQITGTFSMTVKSFKKVTLD + ELKEMGITAKDREDHEYAIVDILWEVQNAKITKVKGQGSAFLSVGWDPYIWGIKTSDK + ASIIGTMNYGFDGSLDDAIDEATDLRKITPGMTESFKAEGKVILDLYKNKTNFLVMQN + EQIRNVDYDGSFIYFKLK" + gene complement(3881990..3883165) + /locus_tag="Ccel_3337" + CDS complement(3881990..3883165) + /locus_tag="Ccel_3337" + /inference="protein motif:PFAM:PF00465" + /note="PFAM: iron-containing alcohol dehydrogenase; + KEGG: amu:Amuc_1566 iron-containing alcohol dehydrogenase" + /codon_start=1 + /transl_table=11 + /product="iron-containing alcohol dehydrogenase" + /protein_id="ACL77626.1" + /db_xref="InterPro:IPR001670" + /translation="MLNFDMHIPTRIIFGRDAQKEIGSLIKPYTKKALLHYGGNSIKN + SGLYDQVVASLKENNIEFVELGGVVPNPRLALAEEGAALCKKEGVDLILAVGGGSVID + SAKAIALGACNDEIWKFYEEGGEIKSALPVATILTIPAAGSESSPHSVITNEEKQIKK + GYGSNLLKPILSIVNPELFFTLPKNQISNGVADMMSHIFERYFTNTKNTDLTDGLCET + TLKTIMKNALIVSKNPQNYDAWCQVGFGGTMAHNDILGLGREQDWACHDMEHELSAIY + DIAHGAGLAILTPAWMQYVYKTNINMFVQFAVNVMGVESSYRDLDAIVMEGIARLREF + YKKMGLPSTLTEVGIEESKFELMARKATGEAYGKEHSIGGLKKLYWQDVLEIYKLAK" + gene 3883367..3883741 + /locus_tag="Ccel_3338" + CDS 3883367..3883741 + /locus_tag="Ccel_3338" + /inference="protein motif:PFAM:PF00376" + /note="PFAM: regulatory protein MerR; + KEGG: cbe:Cbei_0557 putative transcriptional regulator, + MerR family" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, MerR family" + /protein_id="ACL77627.1" + /db_xref="InterPro:IPR000551" + /translation="MDYSIKQVSEKTNLKAHVLRYYEREGLLPDISRSESGIRRYSEE + DLEWLGLVCCLKNTGMSIKQIRDFVALSAQGKETLRQRCDMLIEHRKNVESQIEEMHN + HLKKVTHKIEYFTSQYEEYLHS" + gene complement(3884127..3884951) + /locus_tag="Ccel_3339" + CDS complement(3884127..3884951) + /locus_tag="Ccel_3339" + /inference="similar to AA sequence:KEGG:Cthe_2070" + /note="KEGG: cth:Cthe_2070 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77628.1" + /translation="MKVIGFIGPSGTGKSHRASWVARERGTDFIIDDGLLIKGNQIIA + GVSAKKESTKIASIKRALFIDKKHTEDVAKALVRYNAQSLLILGTSDGMVETIAERIG + IGPLDEKVYITDVASEYEIKQALATRREQGKHVIPVPTFEIKKDFSGYFLDPLQIFRR + KGKGSYQLVGEKSVVRPTFSYMGNYTISDYTIYQIVEYVTSNIPGVSKISRFRAENRP + DGIYIEMDLILIYGYTIKPLLREIQEKVSEQIKHLTALNIQRMNVVAKSLVVENKK" + gene complement(3885316..3886233) + /locus_tag="Ccel_3340" + CDS complement(3885316..3886233) + /locus_tag="Ccel_3340" + /inference="protein motif:TFAM:TIGR02834" + /note="TIGRFAM: sporulation protein YtxC; + PFAM: Sporulation protein YtxC; + KEGG: cth:Cthe_2071 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YtxC" + /protein_id="ACL77629.1" + /db_xref="InterPro:IPR014199" + /translation="MQYQYLSIGVNDSAENVIQHIDNELQQLKEKRINYSIKVVDIEG + ATSVLCNLEEEGRFSKKASQYELLKYHISNALADYIIQQYEERLLTRIINSNYGYFNS + TDKREILEICKKIIRNDDKVFFNTLFQIRRRNLIVKKLLEYFESSNSIILDGFVNFRL + KDYNKELEEIIDNGVDDFLIEREYKEFIRLLKYFVEIQDSKFNVVHVVMEYDDNYMLL + DDKKHEITNECIQEFVTELSEADISHDDLLVSSLITLAPRNIIVHNWERFKNKKLLDT + IKNVFSGKVVLCSGCDICSIAMVKTDIKE" + gene complement(3886378..3887133) + /locus_tag="Ccel_3341" + CDS complement(3886378..3887133) + /locus_tag="Ccel_3341" + /inference="similar to AA sequence:KEGG:Cthe_2072" + /note="KEGG: cth:Cthe_2072 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77630.1" + /db_xref="InterPro:IPR002202" + /translation="MNVLRMPNLPEGNVSCVLLDSRAPRKIIDGLKNRGIEIIPIPAH + PDVYPAVSCHPDIMFHHIMGNIIVYAPNTPPYLIEYICKMGFKMIEGETFLKNKYPGT + IAYNVARVGDFAFHNTKYTDPVVKKLLEEQQIRLIHVNQGYSKCLTCVVDSSSMITSD + REICRKAESVGMDVLLIEPDKSIKLEPFDMGFIGGATGLIAKNKLLFTGDITLHKNYK + EINDFLSLKAVDMVIINDGHLIDLGTIIPIFQE" + gene 3887404..3887619 + /locus_tag="Ccel_3342" + CDS 3887404..3887619 + /locus_tag="Ccel_3342" + /inference="protein motif:PFAM:PF04070" + /note="PFAM: protein of unknown function DUF378; + KEGG: cth:Cthe_2074 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF378" + /protein_id="ACL77631.1" + /db_xref="InterPro:IPR007211" + /translation="MRTPLDRVALVLIIIGALNWLSVGLFRYDLVGAIFGPASLITRA + IFVIVGIAGLYSISLLFRENDEAVRQQ" + gene 3887772..3887963 + /locus_tag="Ccel_3343" + CDS 3887772..3887963 + /locus_tag="Ccel_3343" + /inference="protein motif:PFAM:PF00269" + /note="PFAM: small acid-soluble spore protein alpha/beta + type; + KEGG: cth:Cthe_3176 small acid-soluble spore protein, + alpha/beta type" + /codon_start=1 + /transl_table=11 + /product="small acid-soluble spore protein alpha/beta + type" + /protein_id="ACL77632.1" + /db_xref="InterPro:IPR001448" + /translation="MSNNRSNNRPSGFENLKYEIASQVGVDLKEGYNGDLPSREAGKV + GGNITKRVFQVYRDQHQNQ" + gene 3888146..3889177 + /locus_tag="Ccel_3344" + CDS 3888146..3889177 + /locus_tag="Ccel_3344" + /inference="protein motif:PFAM:PF01594" + /note="PFAM: protein of unknown function UPF0118; + KEGG: bwe:BcerKBAB4_1797 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0118" + /protein_id="ACL77633.1" + /db_xref="InterPro:IPR002549" + /translation="MTDLKSIFSKKITRRILILAAFALLIYLLRGMANMFLLTFIFAY + LGYTAQSYVFRRTKIINSRVLKAIIITFYLVAVTLAVLLLYRYIPVIISEFKTLINQA + TTFYNMTYENETLNYFISLSKEIKISSYIQDNFEVLYKSISNIGKLGFDFVMAIVLSL + FFILEKNRIVRFTSGFKNSKRSIVYDELSFFGRKFVQSFGKVIQTQITISFINAILSM + IMLYILKFPQIFGLGFMIFILGLVPVAGVVISLVPLAMIAFRIGGPTMIVYVLVLVTI + LHALESYILNPKLMSHKTKLPVFYTFVVLIVSEHILGIWGLIIGIPIFIFILDVLEVK + NPDVPVSSD" + gene 3889238..3889504 + /locus_tag="Ccel_3345" + CDS 3889238..3889504 + /locus_tag="Ccel_3345" + /inference="similar to AA sequence:KEGG:TRQ2_0769" + /note="KEGG: trq:TRQ2_0769 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77634.1" + /translation="MAKYNVMSVLTNKRVENVNQMQNVLTESGCIIKTRLGIHDASED + SCSNEGLIILHLTGSDDEIERLESKLNEIPGIKAKNIRLSSEEV" + gene 3889537..3889770 + /locus_tag="Ccel_3346" + CDS 3889537..3889770 + /locus_tag="Ccel_3346" + /inference="similar to AA sequence:KEGG:Cthe_2247" + /note="KEGG: cth:Cthe_2247 regulatory protein, MerR" + /codon_start=1 + /transl_table=11 + /product="regulatory protein, MerR" + /protein_id="ACL77635.1" + /translation="MAEPKRCKECNGIFQYVTSKQLCLSCSQKDEFEFRRIKEFLKDN + PKSSVSMVASSLDISVSHIQKFIDEGRLEIVVK" + gene 3889817..3890233 + /locus_tag="Ccel_3347" + CDS 3889817..3890233 + /locus_tag="Ccel_3347" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77636.1" + /translation="MDIFELITYLKETEDYIEYSFYKHSSEIMNAISNKGIDEILGII + SMREIKKGAYECVTTWEVDNNTCFSKTVLIDISNEMIYITETLDGTDSQSAKADLISD + FDVQKEYSEIIDLMKTKQLNSIEKELLTKVVATFFK" + gene 3890279..3890839 + /locus_tag="Ccel_3348" + CDS 3890279..3890839 + /locus_tag="Ccel_3348" + /inference="protein motif:PFAM:PF01569" + /note="PFAM: phosphoesterase PA-phosphatase related; + KEGG: cbt:CLH_3231 PAP2 family protein" + /codon_start=1 + /transl_table=11 + /product="phosphoesterase PA-phosphatase related" + /protein_id="ACL77637.1" + /db_xref="InterPro:IPR000326" + /translation="MLSAIQHIDIFILNLIQNNLHSPFMDKLMPAITFLGNGGAIWVI + IALLLVVSKKHRVTGIMVIGALIICLIIGNFTLKPIIARARPCWVNTNIQLLVSSPRD + YSFPSGHTMSSFAVATVLFLRNRRYGLWALLLAALISFSRLYLYVHYPSDVAAGLVLG + VAASCLSLKAIPAIINSSVKIQKTRR" + gene complement(3890856..3891962) + /locus_tag="Ccel_3349" + CDS complement(3890856..3891962) + /locus_tag="Ccel_3349" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ckl:CKL_2427 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77638.1" + /translation="MSTVVVDIPSTTFVSSAQPGMNFSVYPTIYAGTDGQYQNCISLM + QIVLPSLPVNFVDSAVLQLAVIAKSGTNPSPVLVNTVMEPYNRTSVTYDTRPAYTPTS + SQINVTTADLYKTVEIDITSLVNSWLNGTVANNGLALTNSDGNTVVQFGTDNISWEPY + FPKLLLTYSGTHGGNSATCFCYSQLAHVIQQIIMFYPASTITVFTKGLTASSITGTPH + QLFSSSVSSNGALFIVMDSGQQQVIPVNSITAIYTGDGTVYNPSFDYLPAPTFPVGCD + TDLVTAYYEYLNDKTDIDIYTGSNIHATGTIYKNECGIIVLSDGSGNTPVFIPVLPIT + ALIPSTSPSLAKVNSDKSQVSIIVETSAQQVKPK" + gene complement(3892033..3893418) + /locus_tag="Ccel_3350" + CDS complement(3892033..3893418) + /locus_tag="Ccel_3350" + /inference="protein motif:PFAM:PF01547" + /note="PFAM: extracellular solute-binding protein family + 1; + KEGG: esi:Exig_0586 extracellular solute-binding protein" + /codon_start=1 + /transl_table=11 + /product="extracellular solute-binding protein family 1" + /protein_id="ACL77639.1" + /db_xref="InterPro:IPR006059" + /translation="MIRPFYCIKNHNIDYIKLDKGIKRRIPMKRRLLSLIIAVILSVC + MLTGCKREEASPKSSAKSTASKTSKTSKVTSANINIFVNNPEYVDAINEYIKEYKKNK + PNITVNLKTVQSDYSQLLKMKIKSGDMPDVFTTSAGSEIKEYAKYSYDLTGQPLVKAM + TDEVRMNMSYKGKVYGFPIKENVYGLVYNKDLFDKNKIPVPKTLVELEAAAQKLKSKG + IQPFSTGYNEFWVFRDVFIHFLDASQPDDVEGLVKSLSSGKAKFETYPLINDNFFKFI + DLTVKYGDIKPLETDLSAELADFAMGKAAMIIGQGSWAEADILKINPKIKLGVTGYPV + DDKTSNAFIVAGTEQATRIYKDSPALAEVLDLYNWLFTSDYGKKWFSKVAKVMPPING + GDMSKMQIAKEFETSKKENRVGDMYVNYVTDDFHQKFGEIMQGYIAKTFTKEQAVKEI + ENSFKKTNKEK" + gene 3893536..3895275 + /locus_tag="Ccel_3351" + CDS 3893536..3895275 + /locus_tag="Ccel_3351" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter transmembrane region; ABC + transporter related; + SMART: AAA ATPase; + KEGG: dsy:DSY1412 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77640.1" + /db_xref="InterPro:IPR001140" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /db_xref="InterPro:IPR017940" + /translation="MQTLKKFIRFYKPYKKLFFVDMLCALIASAIDLAFPQILNLLTK + DVFTGSSSQIIRSLWIIGIGLILMYIVRYFCQYFITSWGHIMGARMESDMRQELFDHY + QKLSFSYYDKNNTGEMMSKLISDLFDITELAHHGPENFFISAIKIIGSFILLAMINVP + MTLILLAVTLIMGVFSLFKNRKMRSVFFDNRKKIANVNSRLQDSLSGIRVVQSFANEE + IEKDKFCESNLKFLDSKKDSYFIMGSFHAGNSFFQGLLYTVVLVSGGFFIAKGTLRAA + DLAIYALYIGIFLNPLDVLINFTEAFQKGLSGFRRFLDVVETKPEILDRKGAKPLVNP + RGDISYNNVSFRYENDSEVLDNVNISIKAGKTIAFVGPSGGGKTTLCSLLPRFYDVTE + GQITIDGKDIRDITLKSLRNCIGIVQQDVYLFAGSIGENIAYGKPDASEQEIIQAAKN + ANIHDFVMSLEDGYDTYVGERGTRLSGGQKQRIAIARVFLKNPPILILDEATSALDNE + SERHIQASLEHLAKNRTTIVIAHRLSTIRNADEIIVINQSGIQERGTHDELLNLNGLY + SKYYNMQFEGLGD" + gene complement(3895327..3896355) + /locus_tag="Ccel_3352" + CDS complement(3895327..3896355) + /locus_tag="Ccel_3352" + /inference="protein motif:PFAM:PF01814" + /note="PFAM: Hemerythrin HHE cation binding domain + protein; + KEGG: cth:Cthe_1509 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Hemerythrin HHE cation binding domain protein" + /protein_id="ACL77641.1" + /db_xref="InterPro:IPR012312" + /translation="MLLTAVFKGSIEEIHRPQKPEDVPGHPVHTFKLENKKIESLIDK + IKTDIDKFRSKDSHENIQNLRNGFEKLWEIDKHYSRKENLLFPFMEKYQITAPPKVMW + GVDDEIRDAIKEVRALLSDYSSVNREHLTGKAEETTVRVKEMIFKEENILFPMVMETL + AEDEWFIIEEGSSEIGYCFLDNVAKWEPVKVNVEKKVEKEGEQPSNNGYIKFDAGIMS + PDEINAVLNTLPFDMTFVDKDGIVKYFTQGKERIFARTKAIIGREVQNCHPPASVHIV + EKIVEELSSGKKDHEDFWIRMGDRFAYIRYFAVRNAKSEYLGTIEVTQDIKPIQDITG + KKRLASFT" + gene complement(3896394..3896762) + /locus_tag="Ccel_3353" + CDS complement(3896394..3896762) + /locus_tag="Ccel_3353" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2514 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77642.1" + /translation="METLSNIIKYYKRAFILGYWVMEAKMADTHNVQPSQTFETIIKE + YLHQGKEKLEKDLAGTREAIKLIARDKTRNFMRTMDMGLNEEERDCLHSLIVTSMYQS + FCYGYGIGKIEGETKQKVCL" + gene complement(3896775..3896984) + /locus_tag="Ccel_3354" + CDS complement(3896775..3896984) + /locus_tag="Ccel_3354" + /inference="protein motif:PFAM:PF06107" + /note="PFAM: protein of unknown function DUF951; + KEGG: cth:Cthe_2512 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF951" + /protein_id="ACL77643.1" + /db_xref="InterPro:IPR009296" + /translation="MSDKFSVGDIVEMKKQHPCGSKQWEIIRTGADFRIKCVGCAHQV + MLARTKFEKSVKKIIKFMVSDKADV" + gene complement(3897000..3897836) + /locus_tag="Ccel_3355" + CDS complement(3897000..3897836) + /locus_tag="Ccel_3355" + /inference="protein motif:PFAM:PF00924" + /note="PFAM: MscS Mechanosensitive ion channel; + KEGG: cth:Cthe_2511 MscS mechanosensitive ion channel" + /codon_start=1 + /transl_table=11 + /product="MscS Mechanosensitive ion channel" + /protein_id="ACL77644.1" + /db_xref="InterPro:IPR006685" + /translation="MLGTLKERLENLLGDFYDPAMIVLKTVVVLIVSFVLVKIGRIVI + KKLFDKQKKLKFKIDDKRIDTISTLTISVFKYTVYISALLIILSGILDLKAILAAAGV + GGVALGFGAQSLVKDTISGFFILLEDQYAVGDMVTIEGLTGTVEHMELRVTRLKNYTG + DLYIIPNGEIRKVINHTRDNKLVIVDIPIAYSSNMGKVTEIAKKVCSEVKDEFDTFTE + EPSILGITSLGEHNMNLRITARTLPNGQWEIERHIRLKIKEEFEKNGLEFFDRTRLIR + PE" + gene complement(3897899..3898615) + /locus_tag="Ccel_3356" + CDS complement(3897899..3898615) + /locus_tag="Ccel_3356" + /inference="protein motif:PFAM:PF07722" + /note="PFAM: glutamine amidotransferase class-I; peptidase + C26; + KEGG: cth:Cthe_2162 peptidase C26" + /codon_start=1 + /transl_table=11 + /product="peptidase C26" + /protein_id="ACL77645.1" + /db_xref="InterPro:IPR000991" + /db_xref="InterPro:IPR011697" + /translation="MYKGKPIIGITAAFDYEKSISTLKDDYYEAIIQCGGLPVIIPVT + EEKSAWVEYLDICNGFILSGGPDIDAAYFGKGNMPYTNEISPIRDSMEIFLTQQAIVM + DKPILGICRGCQIMNIAAGGSIYQDIYAECSTGNTLLKHSQQAPRWFQIHDVNIMKSS + CLYSVFGMDNLKVNSFHHQAVNEVAPGFTVNACSKDGIIEAISNENKKFVLSVQWHPE + NLWRKNRTHLKLFERLVSVC" + gene complement(3898733..3898891) + /locus_tag="Ccel_3357" + CDS complement(3898733..3898891) + /locus_tag="Ccel_3357" + /inference="protein motif:PFAM:PF00301" + /note="PFAM: Rubredoxin-type Fe(Cys)4 protein; + KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein" + /codon_start=1 + /transl_table=11 + /product="Rubredoxin-type Fe(Cys)4 protein" + /protein_id="ACL77646.1" + /db_xref="InterPro:IPR001052" + /db_xref="InterPro:IPR004039" + /translation="MDKYVCTVCSYVYDPEEGDPDGGIAPGTAFEDIPEDWVCPLCGV + GKDMFEKQ" + gene complement(3898975..3899175) + /locus_tag="Ccel_3358" + CDS complement(3898975..3899175) + /locus_tag="Ccel_3358" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77647.1" + /db_xref="InterPro:IPR010916" + /translation="MSSGDDIRARLEDLKCYMYNEIQRLISQSTETVEVSASANTRKY + KPTKHQKALKIERNFKKRCYAR" + gene complement(3899318..3899833) + /locus_tag="Ccel_3359" + CDS complement(3899318..3899833) + /locus_tag="Ccel_3359" + /inference="similar to AA sequence:KEGG:RBAM_013480" + /note="KEGG: bay:RBAM_013480 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77648.1" + /translation="MNNRHRGTMVVGVVLILLGVLFLLSNFGIFQIYFDIFDIGFLFS + NLWPMFLIIPGIIFHYSYFTAKTPDAGLLVPGGILLVTGLTCQISMLFNLWAYMWPGF + ILAVAVGLFELYIFGTREKGLLIPVFILGGLSLIFFTFSLGNSWVLRTYLVPLILILG + GILIVSRNRRI" + gene complement(3899961..3900569) + /locus_tag="Ccel_3360" + CDS complement(3899961..3900569) + /locus_tag="Ccel_3360" + /inference="protein motif:TFAM:TIGR02841" + /note="TIGRFAM: sporulation protein YyaC; + PFAM: protein of unknown function DUF1256; + KEGG: cth:Cthe_2165 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation protein YyaC" + /protein_id="ACL77649.1" + /db_xref="InterPro:IPR009665" + /translation="MNSGSNVKNLKYIDSNNVTAMLTFSDALYQTFTYCKTEGYRDIV + IVCIGTDRSTGDSLGPIIGYKLRGMNYSNVHVYGDLESPVHAKNLEDTIGTIYKRYEK + PFLIAVDASLGRTEHVGFISVGKGSIRPGSALNKELEPIGHMHVTGIVNAGGFMEFMI + LQNTRLGTVMKIADIVAAGIKYVMWKVSREDMLSENEIIRAE" + gene 3900718..3901839 + /locus_tag="Ccel_3361" + CDS 3900718..3901839 + /locus_tag="Ccel_3361" + /inference="protein motif:TFAM:TIGR00229" + /note="KEGG: cth:Cthe_2166 putative PAS/PAC sensor + protein; + TIGRFAM: PAS sensor protein; + PFAM: Stage II sporulation E family protein; + SMART: protein phosphatase 2C domain protein" + /codon_start=1 + /transl_table=11 + /product="putative PAS/PAC sensor protein" + /protein_id="ACL77650.1" + /db_xref="InterPro:IPR000014" + /db_xref="InterPro:IPR001932" + /db_xref="InterPro:IPR010822" + /translation="MSNKIVKEFASTESNFIEDIIDGMQDWVRVIDRDGNILFVNKPM + CEGLGYNAVGRKCYEVLGRSSPCANCISSLKGENIPNCKEETINGRVFSVTSSPLKSF + QSNNVEAVIEVLHDITELKMLSQELEKQNEQLREDLSIARKLQCSLLPKQQFIGDKIS + FSYIYKPCEMIGGDFLDIFEIDEDHIGIYIADVSGHGIAASMLTMFLRAAIDKSSLSP + SKVLTQLYHEFNKNGFENELYISVFFGIINTSDYSFAYSNAGLNVSPVLFSGNEFKLL + RATGIPISNWVDKPEYTEVTQKLSSKDRLLFLTDGIIEIKNKSSEQFGEDRIIEHLLK + NDLKPSSSITKLVDKALAFSGSSIHDIMDDITVALLEMK" + gene 3901903..3902715 + /locus_tag="Ccel_3362" + CDS 3901903..3902715 + /locus_tag="Ccel_3362" + /inference="protein motif:TFAM:TIGR00500" + /note="TIGRFAM: methionine aminopeptidase, type I; + PFAM: peptidase M24; + KEGG: pdi:BDI_3150 putative methionine aminopeptidase A" + /codon_start=1 + /transl_table=11 + /product="methionine aminopeptidase, type I" + /protein_id="ACL77651.1" + /db_xref="InterPro:IPR000994" + /db_xref="InterPro:IPR001714" + /db_xref="InterPro:IPR002467" + /translation="MSINDIADKLESFRNMGYIIPHKSLLKNPQQIEGIRKSGEITTQ + ILDLLEKEVKPGITTAEIDKIVYEHTVSNNAIPAPLNYDGFPKSVCTSINNVVCHGIP + NEKTVLKSGDIVNIDVSTILDGYYSDASRMYMIGDVSPNARKLVEVTKECLDIGTKQV + KPFGSINDIGRAIEPFANKNGYTVVRDLGGHGVGIQFHEEPHVNHFHLKDMGFLILPG + MVFTIEPMINEGDYRVQIGYDNWTVTTEDGSLSAQWEYTIAVTQTGYEILAH" + gene complement(3902681..3903343) + /locus_tag="Ccel_3363" + CDS complement(3902681..3903343) + /locus_tag="Ccel_3363" + /inference="protein motif:TFAM:TIGR00073" + /note="TIGRFAM: hydrogenase accessory protein HypB; + PFAM: cobalamin synthesis protein P47K; + KEGG: det:DET1431 hydrogenase accessory protein HypB" + /codon_start=1 + /transl_table=11 + /product="hydrogenase accessory protein HypB" + /protein_id="ACL77652.1" + /db_xref="InterPro:IPR003495" + /db_xref="InterPro:IPR004392" + /translation="MEIKVMKNIMHANDRLAEENRNYFKSKGIKAVNIMASPGSGKTS + VIIKLIQAFGDRANVAVVEGDIASSIDAEKIDKLGNPVIQINTGGGCHLDANMIKSAA + VSLRLKDGAILFIENVGNLVCPSSFDLGEGIKMVIASVPEGHDKPYKYTSMFELADVV + VLNKTDLMPYIDFDKDSFYKGVKALNEKAEIIEVSCKTGEGISKLADWMLNVQVSHNQ + SV" + gene complement(3903375..3904025) + /locus_tag="Ccel_3364" + CDS complement(3903375..3904025) + /locus_tag="Ccel_3364" + /inference="protein motif:PFAM:PF03458" + /note="PFAM: protein of unknown function UPF0126; + KEGG: btl:BALH_4926 permease" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0126" + /protein_id="ACL77653.1" + /db_xref="InterPro:IPR005115" + /translation="MLVLSIVDIIGTVAFAVSGVLVGIRSKLDLFGIYVLALATASGG + GIIRDIVIGREVPVFFIQWKYFAAISVTMVTTCLLYSMVNRVMSFIVLADAVGLGVFT + VIATYKAMEYGLPVLGIVFAGVITGVGGGILRDIMVNEIPLIFRSEVYAVPSIVGSLM + FYFLYDCIGLCINIYLCVGIIFAIRMISVKLRLHLPVISKGGTEPTIDRSRKNFRM" + gene complement(3904112..3904453) + /locus_tag="Ccel_3365" + CDS complement(3904112..3904453) + /locus_tag="Ccel_3365" + /inference="protein motif:TFAM:TIGR00100" + /note="TIGRFAM: hydrogenase nickel insertion protein HypA; + PFAM: hydrogenase expression/synthesis HypA; + KEGG: tte:TTE0129 zinc finger protein" + /codon_start=1 + /transl_table=11 + /product="hydrogenase nickel insertion protein HypA" + /protein_id="ACL77654.1" + /db_xref="InterPro:IPR000688" + /translation="MHEYAVTQSLLKLVVDEAKRVEASKVLEIRLVIGDLSTIVDDSV + QMYFDIMSEGTIAQGAKLVFRRVKAEFKCRECGEVFIKPTTGFDCPKCGGLGMPTGVG + KEFYIESLEIE" + gene complement(3904591..3904965) + /locus_tag="Ccel_3366" + CDS complement(3904591..3904965) + /locus_tag="Ccel_3366" + /inference="protein motif:PFAM:PF00037" + /note="PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain + protein; + KEGG: csc:Csac_1539 4Fe-4S ferredoxin iron-sulfur binding + domain-containing protein" + /codon_start=1 + /transl_table=11 + /product="4Fe-4S ferredoxin iron-sulfur binding domain + protein" + /protein_id="ACL77655.1" + /db_xref="InterPro:IPR001450" + /db_xref="InterPro:IPR017900" + /translation="MFKMMENIFKNLTSKPATRMYPFEKREPFKDSRGQIEGIEIEKC + IFCSICQRKCPANAIVVNKAEKSWEINQFKCVICNVCVEVCPKKCIVASSEHKTAQAK + KENYKAVQPPKEVEGDNSKVTA" + gene complement(3905001..3906080) + /locus_tag="Ccel_3367" + CDS complement(3905001..3906080) + /locus_tag="Ccel_3367" + /inference="protein motif:PFAM:PF00346" + /note="PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; + KEGG: csc:Csac_1538 NADH-ubiquinone oxidoreductase, chain + 49kDa" + /codon_start=1 + /transl_table=11 + /product="NADH-ubiquinone oxidoreductase chain 49kDa" + /protein_id="ACL77656.1" + /db_xref="InterPro:IPR001135" + /db_xref="InterPro:IPR001501" + /db_xref="InterPro:IPR014029" + /translation="MSSTVIPFGPQHPVLPEPLHIKLVMEDENIVEAIPAIGYVHRGL + EKLTETKEFTQNTYVVERVCGICSVMHAMAYCQGIEELMNIEISDRAKFLRVIWAELH + RMHSHFLWLGLVADAFGFESLFMQTWRDREKVMDIMEETAGSRVVISCNTIGGTRRDL + TKEQMAKIVSTVDEIKHDLEQLEAVFLNNYTVKHRLVGVGVLTKADAIEYSTVGPMAR + ASGIATDLRTTGYSAYGQLDFEPITHNDGDCYARTYVRLKEVYQSIDLIKQAIAKIPE + GEHVVPFKGFPPKGDVISRVEQPRGEVLYYLRGNGTKNLDRLRLRTPTFANIPSLLKM + LPGSQLADVPMLILTIDPCISCTER" + gene complement(3906080..3906460) + /locus_tag="Ccel_3368" + CDS complement(3906080..3906460) + /locus_tag="Ccel_3368" + /inference="protein motif:PFAM:PF00329" + /note="PFAM: NADH dehydrogenase (ubiquinone) 30 kDa + subunit; + KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 + kDa subunit" + /codon_start=1 + /transl_table=11 + /product="NADH dehydrogenase (ubiquinone) 30 kDa subunit" + /protein_id="ACL77657.1" + /db_xref="InterPro:IPR001268" + /translation="MVENLVEITRDQLLAEVQKCKYDGYRFITMTSIDNGDDTIDIVY + HFDIDYKMKNLKITVKKDEEVPSISKVYFSALLVENEIKELFGVNITGIIIDYGGHML + LSEEELGSPMLRQQITIEKRGGNS" + gene complement(3906492..3906941) + /locus_tag="Ccel_3369" + CDS complement(3906492..3906941) + /locus_tag="Ccel_3369" + /inference="protein motif:PFAM:PF01058" + /note="PFAM: NADH ubiquinone oxidoreductase 20 kDa + subunit; + KEGG: csc:Csac_1536 NADH ubiquinone oxidoreductase, 20 kDa + subunit" + /codon_start=1 + /transl_table=11 + /product="NADH ubiquinone oxidoreductase 20 kDa subunit" + /protein_id="ACL77658.1" + /db_xref="InterPro:IPR006137" + /translation="MGIISKSRKKSPWIIHYDCTSCNGCDIETLACLTPMYDAERLGI + INVGNPKHADILLVTGSVNKRNELVLKNIYNQMPDPKCVVAIGACACTGGIFKECYNV + LGGVENVIPVDVFVPGCCARPEAIIDGIVQAIGKLDDKADAMKKVAK" + gene complement(3907020..3907871) + /locus_tag="Ccel_3370" + CDS complement(3907020..3907871) + /locus_tag="Ccel_3370" + /inference="protein motif:PFAM:PF00146" + /note="PFAM: respiratory-chain NADH dehydrogenase subunit + 1; + KEGG: csc:Csac_1535 respiratory-chain NADH dehydrogenase, + subunit 1" + /codon_start=1 + /transl_table=11 + /product="respiratory-chain NADH dehydrogenase subunit 1" + /protein_id="ACL77659.1" + /db_xref="InterPro:IPR001694" + /translation="MSNILIAVIAIIAAPILGGLLFGIDRKITARMQNRFGPPVLQPF + YDFFKLIGKQGVAVNQTQMVYVLGHLVFAIGALVMLVLKQDLLMLMFILTFSGVSLIV + GAMSVRSPYSKIGAQREIMQMMAYEPVLLLMVVGVYKVTGSFMISDIFNHSQPLLYSL + PLVFLAFIYVLTIKLRKSPFDFSTSHHGHQELIKGITTEFSGTQLALLELTDWIDLVL + FMGLISMFFAKPLWVGILIALACYFIEIVIDNISARVTWQWMVKITWVVGIGAALVNI + VWMYLIP" + gene complement(3907868..3909853) + /locus_tag="Ccel_3371" + CDS complement(3907868..3909853) + /locus_tag="Ccel_3371" + /inference="protein motif:PFAM:PF00361" + /note="PFAM: NADH/Ubiquinone/plastoquinone (complex I); + KEGG: dvl:Dvul_2501 NADH dehydrogenase (quinone)" + /codon_start=1 + /transl_table=11 + /product="NADH/Ubiquinone/plastoquinone (complex I)" + /protein_id="ACL77660.1" + /db_xref="InterPro:IPR001750" + /db_xref="InterPro:IPR003916" + /db_xref="InterPro:IPR003918" + /translation="MDWYLLLAAILLPALSAALCFILKNQKVRIAVVSISTLLLFAVA + GGFIALIMNSPEGKLVFQMDEHVLEIVGWLIKGFDFLLLCYIGYFGIKHKKAIVLALT + VLQFIPWVLFEIFGVFGKVHEPAQAFVIDHLSLIMIMLISIIGPIVTFFGLGYMKEHE + HHLHLKVSRQPRFFMILFIFLGAMNALVMTDNLSWMYFFWEVTTLCSFLLISHDGTEI + AVKNGLRALWLNSVGGVAFIIAILMVNTSLGTLSIQAISNSGMQGAFAGMMPVALGLL + CIAGFTKSAQFPFQSWLLGAMVAPTPVSALLHSSTMVKAGVYLIIRIAPAFAGTRLGQ + LVAVAGGFTFVAASAIAISQSNAKKVLAYSTIANLGLIICCAGIGTRISLAAAVLLMI + FHAVSKGLLFLCVGTIEMGIGSRDIEDMQGLFKKMPFTTVITVIGQVSMLLPPFGVLI + TKWMAIETAIHLPLVLVFIILGSAFTIVFWSKWIGIILTMSYKPKYYMEKLSFSIKAA + LSVLIALVMAASIGIVPLYNQFVKPQITAFNIADKEMLSGTGMGLWLEKVNQVVYGGF + SSIIFFGVILLLIVAIPIIINRIKPARLKPPYLCGSNVDDDLRGLEFVSPADKVEKVV + VRNYYMASVFGENKLTFWSNLSAGAIIIIMLGVVIGL" + gene 3910340..3911401 + /locus_tag="Ccel_3372" + CDS 3910340..3911401 + /locus_tag="Ccel_3372" + /inference="protein motif:TFAM:TIGR02872" + /note="TIGRFAM: sporulation integral membrane protein + YtvI; + PFAM: protein of unknown function UPF0118; + KEGG: cth:Cthe_2429 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="sporulation integral membrane protein YtvI" + /protein_id="ACL77661.1" + /db_xref="InterPro:IPR002549" + /db_xref="InterPro:IPR014227" + /translation="MELWNKYQHIIKKILLILFIFALIYLSITYLLPFFAPFIIALIV + SYINEPVIKLLLKFKISRKSAAAISLLFTMSVLGFGITVGIIKIYNELTILQDNLTAY + SSDISGKINGLIDKATLFYNGLPDQVTNTITKNLESFSEQLGTMIASIIQYVINTVSS + IPRLTVFVIVTILGTYFISSDRKSISSFFYRQLPFSWRKNIVSLKKDTFKALIGYFKA + ILILMGFTFLEVSAGLFILNVKYAFLIALIVGLSDAIPIVGTGVVMVPWILWTIITGD + MPLAFGLGIIYVLGILIRQIMEPKIVGSQIGLHPLVTLLAMYIGLKFFGIIGMFVGPI + SIIVVKNFQDSGAMRLWND" + gene complement(3911404..3912261) + /locus_tag="Ccel_3373" + CDS complement(3911404..3912261) + /locus_tag="Ccel_3373" + /inference="protein motif:TFAM:TIGR00536" + /note="TIGRFAM: modification methylase, HemK family; + PFAM: methyltransferase small; + KEGG: cth:Cthe_2428 HemK family modification methylase" + /codon_start=1 + /transl_table=11 + /product="modification methylase, HemK family" + /protein_id="ACL77662.1" + /db_xref="InterPro:IPR002052" + /db_xref="InterPro:IPR004556" + /db_xref="InterPro:IPR007848" + /translation="MNINECMHYAKDILKNANIEAPVHEAGVMLCKVLKCGRTYLYSH + GDRELSIDEKAVLDHMLVQRTGNIPLQYIVGDTEFMSLRFLVTPAVLIPRQDTELLVE + KTIDLLNQGKTGTNKKVLDMCTGSGCIAVSIAYFCPECSIVACDVSQKALDVAKANSE + LNGVQNRVELCCGDLFDAIKGGQKFDIIVSNPPYIETDIIAGLQKEVRSYEPGLALDG + GADGLVFYRRIISSAPERLNRNGWLAFEIGYNQGEKVSALMKESFVDIQIFKDYGGND + RVVIGQLIP" + gene complement(3912280..3913206) + /locus_tag="Ccel_3374" + CDS complement(3912280..3913206) + /locus_tag="Ccel_3374" + /inference="protein motif:PFAM:PF07136" + /note="PFAM: protein of unknown function DUF1385; + KEGG: cth:Cthe_2427 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1385" + /protein_id="ACL77663.1" + /db_xref="InterPro:IPR010787" + /translation="MKKTTIGGQALLEGLLMIGPQYRATAIRKPDGEIIVEKHPQKPK + GKLSKIPIIRGAVNLFSQMVIGVKALMYSAEFIDIEDEDKSYEPSKFEQFLERKFGDK + ITDIAIYFSVVISILFSVGLFILLPNLIAGFIPVKGVIFKNLIEGAFRVGLFIGYLAL + VSLLKEMKRVWEYHGAEHKTIHCYEHGDELTVENVRKYTTKHPRCGTSLFFTIMIISI + LIFSFTGWHNIFLNATIRILLVPLVAGVSLELIKFAVRHENWLFKVLSAPGLMFQKFT + TREPDDSQIEVAIAAFNEVIPSSSVIDDWGKG" + gene complement(3913377..3913586) + /locus_tag="Ccel_3375" + CDS complement(3913377..3913586) + /locus_tag="Ccel_3375" + /inference="protein motif:PFAM:PF01197" + /note="PFAM: ribosomal protein L31; + KEGG: cth:Cthe_2172 50S ribosomal protein L31P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L31" + /protein_id="ACL77664.1" + /db_xref="InterPro:IPR002150" + /translation="MKEGIHPDYSEAVVKCACGETFTTGSTKKSLHVEICSKCHPFYT + GRQKLVDTGGRVDKFKKKYGIVDNE" + gene complement(3913774..3915846) + /locus_tag="Ccel_3376" + CDS complement(3913774..3915846) + /locus_tag="Ccel_3376" + /inference="protein motif:TFAM:TIGR00767" + /note="KEGG: cth:Cthe_2174 transcription termination + factor Rho; + TIGRFAM: transcription termination factor Rho; + PFAM: H+transporting two-sector ATPase alpha/beta subunit + central region; Rho termination factor domain protein; Rho + termination factor RNA-binding; Ribonuclease B OB region + domain; + SMART: AAA ATPase; Cold shock protein" + /codon_start=1 + /transl_table=11 + /product="transcription termination factor Rho" + /protein_id="ACL77665.1" + /db_xref="InterPro:IPR000194" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR004665" + /db_xref="InterPro:IPR011112" + /db_xref="InterPro:IPR011113" + /db_xref="InterPro:IPR011129" + /db_xref="InterPro:IPR013223" + /translation="MDQINLQSKTLEDLRYIAKMLGIKSISKYKKSELVKLLSENAEK + IKADNIVETVVSEEPKKAEPAANTIDTHVSEERSKEASEEIPVLRKSRRGRPSKASKL + MDKPENNGVADPITSVPVQETVIPGNNLNIVPEQNGKPDRLSDTLRHLETKNIEKKAH + GRGRKKDVQPSIESPNTENKAETNTSAVSAGATVNDSIVNLPQRKNGRAKPEQTVEQP + KNVPDEKIPVKVEKDSKPKIYKKEEQPTARQDTRQLHRQVKQHTNTNNKSDNAPEPQR + IPLNQQPQQVQPQQVVPPQSQVISPQIQQPQGSEKIESDDPVEGVLEVLPDGYGFLRS + ENYLSGPKDVYVSPSQIRRFGLKTGDKLRGKGRIPKEGEKFQALLYVQSINGDTPDVA + SKRVAFEYLTPIYPDNRITLETSPREFSTRLIDLIAPIGKGQRGMIVSPPKAGKTILL + KKIANAITINYPEAELIVLLIDERPEEVTDMQRSIKGEVIYSTFDEVPEHHIKVAEMV + LERAQRLVEQKKDVVILLDSITRLARAYNLTIPPTGRTLSGGLDPGALHKPKRFFGAA + RNIEYGGSLTIMATALIETGSRMDDVIFEEFKGTGNMELHLDRKLSEKRIFPAIDINK + SGTRREELLLSQKELESVWAIRKAMSNMGTAEVTEILINKLMQTRTNEDFVNSIKISF + LDKNSQDR" + gene 3916413..3916757 + /locus_tag="Ccel_3377" + CDS 3916413..3916757 + /locus_tag="Ccel_3377" + /inference="protein motif:PFAM:PF00903" + /note="PFAM: Glyoxalase/bleomycin resistance + protein/dioxygenase; + KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance + protein/dioxygenase" + /codon_start=1 + /transl_table=11 + /product="Glyoxalase/bleomycin resistance + protein/dioxygenase" + /protein_id="ACL77666.1" + /db_xref="InterPro:IPR004360" + /translation="MKLGEVCIETNNVVKISDFYRNILGISSDCKDEIHQFIITEGTT + LTVYNNGRAKNNQNQNISLAFTVDDVDKEYKRLLNLGIDIIDAPKLQPWGAKNMHFCD + PDGNHIYFRSLP" + gene complement(3916955..3917122) + /locus_tag="Ccel_3378" + CDS complement(3916955..3917122) + /locus_tag="Ccel_3378" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77667.1" + /translation="MKCYCYETCFVFSVEDSENENEENFLYAWYKKTDNRFLKIYPKN + MEDGGVYQRAN" + gene complement(3917282..3917457) + /locus_tag="Ccel_3379" + /pseudo + gene complement(3917498..3918568) + /locus_tag="Ccel_3380" + CDS complement(3917498..3918568) + /locus_tag="Ccel_3380" + /inference="similar to AA sequence:KEGG:Clos_0811" + /note="KEGG: aoe:Clos_0811 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77668.1" + /translation="MNTQEILLWLLENGGPTIRLRTVTELMEPNSGLDINRMVENLVE + SREVKVWLDNLDPKNVNQRTYHGCANICFENSMSKLAQLGMRAGMSALDERTQPLRNW + LVNMVNTPIEQWDVFAMTIFASFFAVAGYTDTAINEFLNSRLETLYAFTSMGNYDIYD + DTGKYKGVPKAFQGRPIINPHLYVKGNYRYPLIYDVYGLSTMINKGDMAADDKIDTVI + KYIMAPEYHGKIVDGYGILASPNGKYHGMGWDAKVPGFFGIGEEVTRKGNLLIQRMEL + MAHFPFVVRTTWFASALDHLETFRTGKGTYNFPKHYLGEKEGYWVYGMHMGLGENRRA + KIANELESTFWMMLIKKLAEML" + gene complement(3918876..3918951) + /locus_tag="Ccel_R0078" + /note="tRNA-Thr1" + tRNA complement(3918876..3918951) + /locus_tag="Ccel_R0078" + /product="tRNA-Thr" + gene complement(3919115..3919190) + /locus_tag="Ccel_R0079" + /note="tRNA-Val1" + tRNA complement(3919115..3919190) + /locus_tag="Ccel_R0079" + /product="tRNA-Val" + gene 3919351..3920058 + /locus_tag="Ccel_3381" + CDS 3919351..3920058 + /locus_tag="Ccel_3381" + /inference="protein motif:TFAM:TIGR00107" + /note="TIGRFAM: purine nucleoside phosphorylase; + PFAM: purine or other phosphorylase family 1; + KEGG: cpy:Cphy_0752 purine nucleoside phosphorylase" + /codon_start=1 + /transl_table=11 + /product="purine nucleoside phosphorylase" + /protein_id="ACL77669.1" + /db_xref="InterPro:IPR000845" + /db_xref="InterPro:IPR004402" + /translation="MIPTPHINVSKQGIIAETVLMPGDPLRAKFIAETYLENPVQFNS + VRNMFGYTGTYKGKKISVMGSGMGMPSMGIYSYELLNFYGVKNIIRIGSCGAIQEDVK + IRDIIIGMSASTTSNYASQFNLPGTYAPTASWPLMKKALDVAENKGISVRAGNILSAD + IFYDDEPEVWKRWARMGVLAIEMEAAALYMNAARAGANAVCILTVSDSLVSREATTAE + ERQTSFTNMMEIALELA" + gene 3920352..3922829 + /locus_tag="Ccel_3382" + CDS 3920352..3922829 + /locus_tag="Ccel_3382" + /inference="protein motif:PFAM:PF00884" + /note="PFAM: sulfatase; + KEGG: bwe:BcerKBAB4_4608 sulfatase" + /codon_start=1 + /transl_table=11 + /product="sulfatase" + /protein_id="ACL77670.1" + /db_xref="InterPro:IPR000917" + /translation="MKNIRNNLIIFFLVALISTVDIFNTGNGFVQLALVLLASIVIFN + MSAVKFKHKRLIFTILFIANVAVLALTFTQRIYLLNMLCLSYVVWSIITPKLHRFKLL + FPITFLLSFISVYAAALLDFSLPIFIISFYPVYVFGSMLDGKNIIKSKKIWSFAFLNL + AISALGLAIFLFKSLGRSIIDSALLLNFVKLGSVTAVYLPFITLFIIWFVISANTIFR + MLISRFINGSSAFDLTDYIKPVIDLISFFAVTGITTFICEFSIRRDFKETVKDVLDPN + LLFNMLVLCGIYLCLMALIGKGIPKIIIGILTIFLTVANYIKFTYFDEPFYPWDLYLV + RNLIGISREYLNIPIIIGVVAAIAFLVFLVIRFRKAIGKYLKPRFTLFLLPFAAALFL + LNSVILTNTPLSVQLGIQKSWYIGKDEIMANGMFAQNYFYLTELDKYLNPKPQGYNEN + KMAEINSKYGKTGESVAASAVVSKEKPNVIVIMSESFWDITKLNDVKFSKDITEYTRK + YHKGQIAAPIIGGGTANTEFEALTGMSISSLSPGIIVYNAYLRTETSSIASVFKDNGY + STTAIHPNYGWFYNRDKVYNYFGFDNFYDVDSFSLSTQCKGPYISDYALVDKIVDTLN + NSNKPAFVFGVSMQNHDPYIDKYSSHDVTVESTKLDSEQKNIVGNFAQGIYDADQSFG + KLIQELGKINKPTLVYFFGDHAPRLGSLNDYYKVYDLLGTDDRSAQNQGLEKLKYYTT + PFAAWSNYKDIDSFSEIVSPSHLAYKILKDTGIKYPNYFNILSELEKSFPVLHQQTIN + TVDNNNDLIKDYRLIQYDLLFGKKYLY" + gene 3922942..3924795 + /locus_tag="Ccel_3383" + CDS 3922942..3924795 + /locus_tag="Ccel_3383" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase A domain protein; + KEGG: cbe:Cbei_4484 multi-sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="PAS/PAC sensor signal transduction histidine + kinase" + /protein_id="ACL77671.1" + /db_xref="InterPro:IPR000014" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MCYLSYSVLLPVISLIILLTYAVTTSCVFIIKRNISKLKLYMLL + NIVLTLWSLSFIFFFSSPDEDAARMWYKVSTIGFSTYYILSINIASILNDGHQKTKLT + VPVIFSLCVPIVILFLFDDLRFISFYKSNGVWLYIFKSPDPWFIPCFLFIAVLLYFNL + KTTELKSVITYVIFQTIPLSIGIATNVILPVFNSNMSPTIVHTAVLIYSIALNLIYGK + QSLSTTSSSISAKHIISKVTDMVIITDATGKILEANNSLKELSGYSDTDLSEKDIHTL + FSPKICSDKSSVKLSGYKFLTKENRTIPVNISISQIYSEDKIILGTAYVLQKNLLNLT + DKAAEEAAVTRYSSQTSEKLKEWDKLKTDFLCNVSHELRTPLNLMISSLKLSSLKISQ + NHGVLDTALMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLELNLSNNNIVDIVEET + VLSVASHIKDKEITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNNDGREIYVSI + ADSIDSVKISVKDNGIGISLENQPLIFERFIQVDKSLTRQHEGSGMGLTITRYLVELH + KGTIALESEPNIGSTFTITLPVYLVPKGVGKKVSTVVTLNEKVNIEFSDVY" + gene complement(3924832..3926064) + /locus_tag="Ccel_3384" + CDS complement(3924832..3926064) + /locus_tag="Ccel_3384" + /inference="protein motif:PFAM:PF02274" + /note="PFAM: amidinotransferase; + KEGG: amt:Amet_3161 arginine deiminase" + /codon_start=1 + /transl_table=11 + /product="amidinotransferase" + /protein_id="ACL77672.1" + /db_xref="InterPro:IPR003198" + /db_xref="InterPro:IPR003876" + /translation="MSSQNHTINIYSEIGKLKSVLLHCPGEEVENIVPDYLRRLLFDE + IIFLEQARREHDQFASILRKEGVEVLYLTDLMADILENQDIRKNFLKEFMIEGKAVTE + GLQEAIFEYLDDLSPKELINKCVAGIRQEDLKNIKPKELGDMVKNAYPFYLDPIPNLY + FQRDPFASIGRGVSLNVMANETRNRETLFAKYILNYHPGFKNVPRWYNRDKTHPIEGG + DILVLSEKVLAIGISDRTSPVAVERLAHNLLNSSEPIETVLAFDIPKTRAYMHLDTVF + TMVDYDQFTIFPGIEDPLDVYSITKGENNQLKIRYEYKDLSNTLKEYLKLPAVNLIRC + GDGDPIAASREQWSDGSNTLAVSPGKVVCYNRNIVTNNALRRNHIEVLEFESYELSRG + RGGPRCMSMPLYRENPYK" + gene complement(3926232..3927593) + /locus_tag="Ccel_3385" + CDS complement(3926232..3927593) + /locus_tag="Ccel_3385" + /inference="protein motif:TFAM:TIGR00797" + /note="TIGRFAM: MATE efflux family protein; + PFAM: multi antimicrobial extrusion protein MatE; + KEGG: cbe:Cbei_2656 MATE efflux family protein" + /codon_start=1 + /transl_table=11 + /product="MATE efflux family protein" + /protein_id="ACL77673.1" + /db_xref="InterPro:IPR002528" + /translation="MSIKYVQDMTEGNEAKLLIKFSIPMLIGNIFQQFYNLINSVIVG + KYIGANALAAVGATASLNFLTFSICLGLSIGIGIIISQYFGAKKEEDVKSAIANAVYV + IAVSGIIMSIITCLLARPILQVMRTPHEIIDDSVKFLRITAGGMIAVAAYNAIAGILR + ALGDSRTPLIFLILSCGVNVGLDLLFVLKFGFGVAGAACATVISQALAALGCIIFAIM + TNPYFKLKKENMKINWPIIQKCIKIGVPVALQNSMIAISLVALQSVVNGFGKVAVAAY + TATSRVEQLIIQPFNSLGAAMSTFAGQNMGAGKLERVRKGYRKSIMIVGVFSLLALLA + AQFGGYAIMSMFVKDSDVIGLGAKAIKITSCMYFALGMIYVTRGVLNGTGDAFYSMIN + GFVEVIGRVGFSTVLAMIPTIGVWSIWSTTGLTWAITAIASIIRYRQGKWKHKSVVTE + NRS" + gene complement(3927975..3928682) + /locus_tag="Ccel_3386" + CDS complement(3927975..3928682) + /locus_tag="Ccel_3386" + /inference="protein motif:PFAM:PF06352" + /note="PFAM: protein of unknown function DUF1061; + KEGG: bca:BCE_3298 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF1061" + /protein_id="ACL77674.1" + /db_xref="InterPro:IPR009411" + /translation="MELNEIMEALKSLGNERTKKKYMSSGAKEPVFGVTISAMKPIFK + KVKYNQTLAEQLFATGNYDAMYLAGMIAEPNKMKEDDFNRWIEGAYFYMISDYIVAVT + LAETDIAFTVADHWIDSGKELTMSAGWSCYEWLLGTRKDSEFNRDKLLSMLKMVRDTI + HKQPNRTKYAMNNFIMSVGISYLPLHEEAKEIAQEVGKVDVYVGKTLCQANLAADYIQ + KAIDKGKLGFKRKNVRC" + gene complement(3928703..3929182) + /locus_tag="Ccel_3387" + CDS complement(3928703..3929182) + /locus_tag="Ccel_3387" + /inference="protein motif:PFAM:PF02590" + /note="PFAM: protein of unknown function DUF163; + KEGG: cth:Cthe_2326 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF163" + /protein_id="ACL77675.1" + /db_xref="InterPro:IPR003742" + /translation="MKITIAAVGKLKEKYLKEAVSEYSKRLSRFTEIEIIEVDDEYAP + DSLSVAQESQVKKKEAERLLKRVKQGSYVVLLDLAGEQTTSSGFSAKLENVMLSGNSH + ITFIIGGSLGLDQSLIKVADYRLCLSKMTYPHQLARVILMEQIYRAFKIIKNETYHK" + gene complement(3929305..3930096) + /locus_tag="Ccel_3388" + CDS complement(3929305..3930096) + /locus_tag="Ccel_3388" + /inference="protein motif:PFAM:PF00753" + /note="PFAM: beta-lactamase domain protein; + KEGG: cth:Cthe_2327 beta-lactamase-like protein" + /codon_start=1 + /transl_table=11 + /product="beta-lactamase domain protein" + /protein_id="ACL77676.1" + /db_xref="InterPro:IPR001279" + /translation="MVKFCSLYSGSSGNALFIGTEKTKILIDAGLSGKKILEALCSIG + EKPEELSAILISHEHVDHVRGAGILSRKVDIPIYANESTWCAMENGIGPVKLENKVAF + STGEEFEIGDICIRPFAIPHDAAEPVGFNFFADGKRITTATDIGHMSDELLDSIVGND + LVLLESNHDIEMLKVGPYPWPLKKRILGDHGHLSNENAAKVITYLAEKGCSRFILGHL + SSENNFPELAYQTTYNALNEKKIAVGSDVELEVALRDRVGHINKI" + gene complement(3930119..3931384) + /locus_tag="Ccel_3389" + CDS complement(3930119..3931384) + /locus_tag="Ccel_3389" + /inference="protein motif:TFAM:TIGR01072" + /note="TIGRFAM: UDP-N-acetylglucosamine + 1-carboxyvinyltransferase; + PFAM: EPSP synthase (3-phosphoshikimate + 1-carboxyvinyltransferase); + KEGG: cth:Cthe_2328 UDP-N-acetylglucosamine + 1-carboxyvinyltransferase" + /codon_start=1 + /transl_table=11 + /product="UDP-N-acetylglucosamine + 1-carboxyvinyltransferase" + /protein_id="ACL77677.1" + /db_xref="InterPro:IPR001986" + /db_xref="InterPro:IPR005750" + /translation="MDKFIINGPCPLNGEVTISGAKNAAVAVLPAALIINGISRIENV + PDIKDVKVLLEILSKLGARITKEDANTVICDTREINCWTAPYELVKSMRASYYLLGAL + IARFGRAEVSLPGGCDFGFRPIDQHIKGFEAMGASVEIEYGIVKVDASNLTGAQIYLD + VVSVGATINLMLAAVKAKGQTTIENAAKEPHVVDVANFLNAMGAHIRGAGTDVIKIRG + VDHLKGGGTHSIIPDMIEAGTFMIAAAATQGDVTVKNVIPKHMESLTAKLIEMGVTVQ + EDEDFIRIIGGNKIRNVNIMTLPYPGFPTDLHPQATVLLSLAEGVSTITEGVWDSRFQ + YVDELKRMGARIKVEGRIAVIEGGNPLSGAPVKATDLRAGAAMVLAGLISKGRTEILN + IKYIDRGYEDFVHKLNILGADISRVSSED" + gene complement(3931584..3932417) + /locus_tag="Ccel_3390" + CDS complement(3931584..3932417) + /locus_tag="Ccel_3390" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2329 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77678.1" + /translation="MDWKRAKIILIVVFTILNIVLAFAWYKNIKVDQVSQQTITNTGL + IMAKSGINVECPIPKYKGKDYILKYEERPLNSSKILDVLLGEGYVKAGSDTYVKGENK + LVFTSDSGFEYTGTGENSVKVYTDSKEGINAKFKVLAAKMDIPFDEFKQDYYPDTKKV + NEKQLIYKGIYKGYEVFDNFIEIGVVNKEIQSIKYQYKKPISITARRDVNVIPVYQIL + ITKMTKYPGMDICNVDMGFKGYTGVDKETKTLYEGLSWRIRNTEGKEFYFNARNGEEI + K" + gene complement(3932481..3933986) + /locus_tag="Ccel_3391" + CDS complement(3932481..3933986) + /locus_tag="Ccel_3391" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2330 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77679.1" + /translation="MIKLSSDKVRIYFEKLKTVFLIFLIILCVVQVGILWSTQSSSFP + FLSSLFSDSKIALQVSVEDTKGKYLLPSRIVLSTDFDGDHFIIPNGSKEYNNIWDGAK + LYLSQALDIKPQKTQPYNGKMWGKLAASKPYMLEFKTSIPIDIVKWVLNLKPSAGDGL + SSIYKLIICPDDPDNGYSDTLYIRDDANIYTYSLNTFINSLGRDEFTAMYNVLKNNPE + SKNYQTAAEKWGKSEEINFPKDMLGPMLDNTEEAYPSITCSTFSGTDKADLNSMDYED + YEKIALELFGESSRDYDYDRDINGSVVFKRLDIVYRLYKNSVFEYKYTGSQTSAYNLK + LLDAYKKAIEFIIDINKQNDFLSKVNVYLSSVEERSNSYIFKFDYAIIISEQYGEVPV + ILKDYAVAKGMDNQENSIIIEANSKRVVHYQMIPIKFKTGKMVNYQWAFQYMYSKAFE + KYPELNNKEMSVKNFGIYYVLSNSVLKENIAPSFVMYSEDGSSYVIPLSGK" + gene complement(3933992..3934423) + /locus_tag="Ccel_3392" + CDS complement(3933992..3934423) + /locus_tag="Ccel_3392" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2331 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77680.1" + /translation="MKSKILIFIIIVSVLTAIFATPAMAANIVKITRPDGNEVVEKPI + FSICGVCTYDETFIEFEYWDKSSERYKPLETTDGELTFKVGSSKLFGKNVELKYKGEN + RIRVIAYTKNIKDDPKDYTIIYAAEKKSLLDNIRNWLLDKF" + gene complement(3934531..3936354) + /locus_tag="Ccel_3393" + CDS complement(3934531..3936354) + /locus_tag="Ccel_3393" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + histidine kinase HAMP region domain protein; histidine + kinase A domain protein; + KEGG: cth:Cthe_2332 multi-sensor signal transduction + histidine kinase" + /codon_start=1 + /transl_table=11 + /product="PAS/PAC sensor signal transduction histidine + kinase" + /protein_id="ACL77681.1" + /db_xref="InterPro:IPR000014" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR003660" + /db_xref="InterPro:IPR003661" + /db_xref="InterPro:IPR004358" + /db_xref="InterPro:IPR005467" + /translation="MKFWKGIFRLLSSLQWKLVYIFVSMCIILVSVVYVVINTGLQNI + YYDSFANSIEAGYNNWIDVRGGVPESNQKLSQYFNESGDALFFGANSSYLGMTIIDLT + KIQTSNGGILYSSEKGYSDEPEIFADRIKTSESLMAIWAGNKPQKNERLIKGPNGQYF + EYIKQPKENLIFYFTYQEEAWIAILEKFNYLILSSALIAVFLSLVLGYLLSKTITSPI + ISVMHKAEKVAEGDFGEQLAVKSEDEIGNLTKTFNYMAAELKKTLSEISSQKNKVETI + LNYMADGVMAFDLKGMAIHANPAARKLLGNDAVSHPFKEFAVKVGLDVRIEDIVYFEE + SPVRESDTIINDMYVKVYFAVFTDTNKKPEGIIVVLHDATEQQKLESMRREFVANVSH + ELRTPITSIKSYTETLLDGAVEDHETSNRFLSVIDSEADRMTRLVKDLLQLSRLDNQQ + MNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVINADKDRLEQVVVNLI + SNSIKYTAEYGEITVYVGKIYNDVYMKVTDSGIGIPGESLPRVFERFYRVDKARSRDM + GGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIPRAM" + gene complement(3936390..3937082) + /locus_tag="Ccel_3394" + CDS complement(3936390..3937082) + /locus_tag="Ccel_3394" + /inference="protein motif:PFAM:PF00072" + /note="PFAM: response regulator receiver; transcriptional + regulator domain protein; + KEGG: cth:Cthe_2333 two component transcriptional + regulator" + /codon_start=1 + /transl_table=11 + /product="two component transcriptional regulator, winged + helix family" + /protein_id="ACL77682.1" + /db_xref="InterPro:IPR001789" + /db_xref="InterPro:IPR001867" + /translation="MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALS + QSPDLILLDIMLPKMDGFTVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITK + PFSPRELMARVKANLRRMIPGEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLRE + FELVKFLAAQQGTIFSRETLLEKVWGYEYYGDVRTVDVTVRRVREKLEKDPANPQYIV + TKRGVGYYFNKV" + gene complement(3937268..3938365) + /locus_tag="Ccel_3395" + CDS complement(3937268..3938365) + /locus_tag="Ccel_3395" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cno:NT01CX_1552 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77683.1" + /translation="MKAKAISSIIIGFLILLNANTLSPVKATNELGLESAIETALSNS + KEVKLYDDKITYAKQRYDLAYAKSASAMAKGWDDDTELISNKKEELLYPLQRKNQIDQ + LIWEKQNIAESLELDITKAYYEILNKNTLITLREKAVKRLQNELEIKKKQVKSGTDVQ + STVTSLQISINQEQQKVNGLIRDRDVLKIKLNGMLGLDLNSVITLKKVDIPVNNIDNI + NIEKIAEEQIVKSHDIIKAKKDLEEARLEYDIVKKYSYKPDTNGIEEVEDRVLDAEYA + LEEMGKDLNVKILSDFNSLMNLRDDIEINRLEYEKTEKLAEVASVKHKLGQITLVDYE + KVKASEDEAKIALEIAKLDFLIAYENFNRIV" + gene complement(3938384..3939628) + /locus_tag="Ccel_3396" + CDS complement(3938384..3939628) + /locus_tag="Ccel_3396" + /inference="protein motif:COG:COG1538" + /note="KEGG: cth:Cthe_1765 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Outer membrane protein-like protein" + /protein_id="ACL77684.1" + /translation="MYKKIILIILLFSVTFSSVNIYAQEKSTTTLNLKDATQLAVKNS + RQLTRLGKTIKDLRRKYEGSYAVDVLNTDRYVMVDRLNELYAKLTSQKLMSLNEQGEL + LMLYTVLNDTEAVKNIKLEPYINSKDFPDAAACAAIVKSCLNKELTYLSIEDSIRQAF + DSILSLKQGIYITQKSYELQKQRFNKAEKDLKNGTISEIDRLTIETEYKKQGLELKKL + KRTLQNLEMSFKRQLGISLDTDIALVPYKSNPVYRIDKYENYLERALMNRYEITSLKM + DLKAAEIQLYTFNLIYSFEFSTSELDLYKRNMELQIPGINNEIKEKQVAVEQELKRAY + ADLVDKRKTMENSKLSLETKKKSFEASKVLYKAGTLSSLDYNTAGVSVEMAQNDYDTK + VREFDYSVYKFKNSYNIGPSYK" + gene complement(3939731..3942013) + /locus_tag="Ccel_3397" + CDS complement(3939731..3942013) + /locus_tag="Ccel_3397" + /inference="protein motif:PFAM:PF00395" + /note="PFAM: S-layer domain protein; + KEGG: cth:Cthe_2348 Ig-related protein" + /codon_start=1 + /transl_table=11 + /product="S-layer domain protein" + /protein_id="ACL77685.1" + /db_xref="InterPro:IPR001119" + /translation="MYIRRKLSVVLALVICLLSFTQAFAFGNEDSMTVDEKATALNKI + SLLTGTTTGFNLDGYLTRAEATTFIVKLLGKAEYVNQEKDSLRISRFPDVVQSAWYAP + YVGYCSESGIIGGYPNGNFGPNDRLNEKAFLTMVLKAIGYSEFTGSEVYTKAYEAGLV + TDNSYLDKTDVNSEYKRGDVVTLLYHTLSISPNGSQVSVLKTLVSSGAVKINSAISAG + LLSEADKLEITEVIPQSAMTLIVKFNKEIQKLTADDVQINTFGNDSEVLNASIVKQEG + NTLTVKTALQVPQKNYYFKINNVSDLDDNIKLPYVEAAFPGYIQKEILSDFFKISSIK + PVSKNAINIYFTQPVNINAEDPTFYSIFDGDNEIVKGSAGTIAVKALDSQKNAVSLTL + KGISLAPDKEYRIKVSGDLNSEYGVRLGEAEGDSGTFISINEDNVEFAVDKIYALNSK + TIRIDFNKQVNPTLAQQIYNYSLTSQSDYQIQITKAVVAPDVSSNGKSILLTINGGLD + SSQEYKLMINNLNDISRQQSITERQYSFSGKYTDSGVLSVSDIKVIDTGTLDIYFNRE + LDSETAAVSNNYTFIGITNAMYSSIPVKAYFDPQQPKKVRLFLGSDNQFKYKDNYRLV + VQAALKDYMGNPVGTLLYASFPCNTDIKAVKPNISNAVIIAKDAVKLTFSRELSLETP + NILNSNYVLEYSDGVNTIKKIPISVNYINATTMILKFDKLDFNNRYTIRFTSLKDISG + MYKSSGSEFNPVQVIMGSDK" + gene complement(3942231..3945155) + /locus_tag="Ccel_3398" + CDS complement(3942231..3945155) + /locus_tag="Ccel_3398" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2348 Ig-related protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77686.1" + /translation="MRNLRKLTAVVIAVALVLTSMTAAFAASGSYEFEDQATVLKDLG + IWQGDTTGDLMLGEDLTRAQGAVLVLKTVLGKTDKDMEAADVSKIASFDDADEVPAWA + EGWVALAVQEGVMKGGNNKLAAGDPLKGKDLASMFMNALGFAAENDYATSVELLAAKS + AGKILVAIADDITDADLTRDAASAVVFDTLTVKAKDATKTVVEVLVGTDATKKAVAEK + AGLIVAPAAQTVTDVKPLNLKQVQITFAKDLVKADAEKIANYVVTEGTTDKATGGSVA + LQADGKSVIVTLGQGITNGATAVVEVKNFATYKSDAVKFEDSTVPTVLGVTVSGPNTL + TVEYSEPVQLKSSTTPVTDAISGGEYKIDGGNYILTDIEININKVTLTVGVPLTEGAH + KVSFESKGFIFDYAGYNVLPKTVEFTVTNDNTAPVLTLKSADPKQIVLTSNKPLKEDS + VKSGNVRYRHTYNTDTYVVKGNDTKTVDLETISKVTLTDSGTTLTIDFSGNVIPLGAT + NLYIGYDDANGTQIQDLWGNKLPATTIPLNITLDTVKPTVTEVKFDNTLQLTVVFSEK + LNKASAEDKGNYVIKDSAGKVIAVTGATLVNDDSLNKVQLAFTEELGGGSYTIEIKGV + KDDAFVNNAMDTYTSTLNFTDKVAPKVTVASARIVISKDSANNADKKASIYIPFSEQM + DPTTLVKANFMKAIGDPLSIDTKFVALGDNDTVTPAADGKSVTIVLDKNADAFVYDQV + QIKVGLVKDVAGNTLATYVQDVKPAKDAIKIEKVEAIAKKQIKVTFDGRLSTITAKGF + KLANEAGEQIALSVASVALNDDGKSVVVFNLGAELKEDATYANKEAVTVVLLSVDEAV + ALDTKSYLGAVISTSSETASDVIVPTVDTTTVMADGTIQVTFFEKIDASTLAAKTLNG + FSVSGDVKIKSVGASGKVITLTPEDGKKFSDSTVVKYNSVAGITDESGNKVADFEKTA + KK" + gene complement(3945454..3948297) + /locus_tag="Ccel_3399" + CDS complement(3945454..3948297) + /locus_tag="Ccel_3399" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cth:Cthe_2348 Ig-related protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77687.1" + /translation="MGNFKKFSAAVVAGAIMLSSVVPSFAAAYTPVNGDKAIVLNQLE + LYAGTSNTSFVPSLETSLTRGQGATLLAKLFNMDTAAQALTEDEADAILEDFADANKV + PTYAKNRLAYLIKNNIMSGSKDTTTGDVFVNADEALLGGQFATLILKQLGYTVSSWSE + AIDQLSKVDGAKEIADYLAYAKEAVLRDHAVGIMYGSLTSEYSDGKATIIEKIVEAKP + SLRAIAETAGLLVTPETLAVDSVKALNLKQIQVVFNKTVDKSVVEKIEYFNAYNNGST + TDLAAGGSVELQADGKTAIVTLGSNFNNGTVAKVVVKTIATYTNDSVAVADTTVPTVV + GVTVTGPQTITVEYSEPIKGINNAEYTIDNGNYIVTNAAANGNNKVDVTVGVNLTNGE + HSLKINGTNVSDYADYKVISRTISFTVAADTTAPVATVKSVSPTEVKVTFNKPVTNVK + EANVLYRHTYNSNLYELAGTSDKVTVNSSTEITIDWSAMPIPLGANKLYIAYGSDTGA + KIQDLWGNKLEALSLDLSVAMDTVKPAVTEVKFVDASTLKVIFSKKVEASSAETASNF + IVKDSAGKVVTINTPVLGGTDVNEVTLTTTTANALGGGSYTVEVKNVKDTALVPNIMN + DYSVTLNINDTVRPTLGTAKHLIDSSDANHQKATVYIPFSEVMDAASLVKTNFMKVVN + NGTASVLGDNDTLTVAADKKSVTIVIDNGTTAVTDINVVVGAVRDVAGNGLAAFAANA + DPAADAIAIEKVEAIAKKQIKVTYDGRLSAVTAAGYSLIANGADTGINLSVAGHTVNS + DGKSEVIFNLGTELSADAKSSNYAVSLAASSAAGTKSFLGTVVSDNAGKQAEDKITAS + IVSVTVVGGTIEVKFDEEIKADTLAVTLNGFSVTGGDAKLTSVALKGGDATTIVLTGT + GLVANQTSVSYNSAAGIADNGSNLIASFTQIAK" + gene complement(3948632..3949750) + /locus_tag="Ccel_3400" + CDS complement(3948632..3949750) + /locus_tag="Ccel_3400" + /inference="protein motif:TFAM:TIGR02092" + /note="TIGRFAM: glucose-1-phosphate adenylyltransferase, + GlgD subunit; + PFAM: Nucleotidyl transferase; + KEGG: cth:Cthe_3167 glucose-1-phosphate + adenylyltransferase, GlgD subunit" + /codon_start=1 + /transl_table=11 + /product="glucose-1-phosphate adenylyltransferase, GlgD + subunit" + /protein_id="ACL77688.1" + /db_xref="InterPro:IPR005835" + /db_xref="InterPro:IPR005836" + /db_xref="InterPro:IPR011832" + /translation="MKNVMGIIMSGGRNTKLKELSTMRSSPAVPVGGKYRAIDFILSN + MVNSGITNIGVIAQYSFRSLMDHLGSGKEWDLDRKTDGLFLFPPFLSDEGTGWYRGTA + DAMYNNLTFLKRSNEEYVLISQGNCIFTTTFDDMLKAHKEKDADITVAYREMNDIPIE + ELANMGIMQLDSSSRVIDFQEKPMHPNTLNGSLGIYMIKRELLISLLEESVAHGYYDF + VLDIIIKMLHKLKIYGYKYSGYWRSISTVQMYYKCNMELLDPVVNNELLGNLKIYTKV + KDEAPAKYNEEAEVKNSIIADGCIIEGTVENSVLFRGVTVKRGAVVKDSIIMQGSVVE + ENSALNYAILDKSVVLSKSKCLKGEKTWPIIIGKNVVV" + gene complement(3949747..3951027) + /locus_tag="Ccel_3401" + CDS complement(3949747..3951027) + /locus_tag="Ccel_3401" + /inference="protein motif:TFAM:TIGR02091" + /note="TIGRFAM: glucose-1-phosphate adenylyltransferase; + PFAM: Nucleotidyl transferase; + KEGG: cth:Cthe_3166 glucose-1-phosphate + adenylyltransferase" + /codon_start=1 + /transl_table=11 + /product="glucose-1-phosphate adenylyltransferase" + /protein_id="ACL77689.1" + /db_xref="InterPro:IPR005835" + /db_xref="InterPro:IPR005836" + /db_xref="InterPro:IPR011831" + /translation="MIRKEMIAMLLAGGQGSRLGVLTKNVAKPAVLYGGKYRIIDFSL + SNCTNSGIDTVGVLTQYQPLKLNAHIGIGKPWDMDRIDGGVTILSPYLKAEMGEWFKG + TANAVYQNIQYIDKYSPHYVIILSGDHIYKMDYSKMLDFHKENHADATISVINVPYEE + ASRYGIMNCHENGKIYEFEEKPKNPKSTLASMGVYIFTWSTLREYLIKDNECSDSVND + FGKNIIPAMLGDGKSMWAYQYSGYWRDVGTIQAFWESNMDLVSRVPQFNLFDPEWRIY + TPNPVKPAHYIASSACVKKSIIAEGCSVHGTVINSILFPGAYIEEGAVIQDSIIMSNS + RVCKNAYINRSIISEQAIIGEKARLGEGPDVPNEYKPGIYDSGITVVGEKSSIPADAV + IGKNVMIDIGASAVDFTSLNVQSGKSVFKGGVAE" + gene complement(3951158..3951934) + /locus_tag="Ccel_3402" + CDS complement(3951158..3951934) + /locus_tag="Ccel_3402" + /inference="protein motif:TFAM:TIGR00067" + /note="TIGRFAM: glutamate racemase; + PFAM: Asp/Glu/hydantoin racemase; + KEGG: cbe:Cbei_3599 glutamate racemase" + /codon_start=1 + /transl_table=11 + /product="glutamate racemase" + /protein_id="ACL77690.1" + /db_xref="InterPro:IPR001920" + /db_xref="InterPro:IPR004391" + /db_xref="InterPro:IPR015942" + /translation="MNADKIGFLDSGFGGITVLSEALRQLPKENYIYYADIEHVPYGT + KTKEEVRQYVFQAVEFMVSQGIKALVVACNTATSIAVRELRNMYEFPILGMEPAVKPA + VQNGNGKRVLVLATALTLREEKFHNLVQRVDQEHVVDYLPFPELVELAENMVFDYEKV + IPVIKKKLDGYNLNNYKTFVLGCTHFPIYINAFKEVLPPFIDIIDGSEGTIRYLKLLL + EERHLISTNINGGNIVFFDSGRLIQNKDRLNTFKWLISHC" + gene complement(3951967..3952431) + /locus_tag="Ccel_3403" + CDS complement(3951967..3952431) + /locus_tag="Ccel_3403" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77691.1" + /translation="MILYNITEFVFEMMLINDEVKMRKIFRTLGISIFNAIIICIMLM + IIIRINLPMAGIYSVFGVSSILFPVVVLLLYIRIWGAETMVIVPISLILSALYSLGIS + IYSYYGTGGFSIMFKDLMYFIYFLPSAIYCITGWIIFAAMAKMFKTTRRREF" + gene 3952563..3954167 + /locus_tag="Ccel_3404" + CDS 3952563..3954167 + /locus_tag="Ccel_3404" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: chy:CHY_2613 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77692.1" + /db_xref="InterPro:IPR010916" + /translation="MPGMPIYQDSPTNLKNQIFAANGSSVVNVQADNTGRLKVATDSS + SPLAVDVDEAVNSITVYGSDGTSNQVLRTTATGQLDIRPLTVSDTVNVSITQADDSIT + VYGNDGTANQIIKTNSTGQLDIRPLTSSDTVSVDVSQATDSIAVYGNDGTANQIIKTN + STGQLDIRPLTSSDTVSVDVSQATDSIAVYGNDGTANQIIKTNSTGQLDIRPLTSSDT + VSVDVSQATDSIAVYGNDGTANQIIKTNSTGQLDIRPLTSSDTVSVDVSQATDSIAVY + GNDGTANQIIKTNSTGQLDIRPLTSSDTVSVDVSQATDSIAVYGNDGTANQIIKTNST + GQLDIRPLTSSDTVSVDVSQATDSIAVYGNDGTANQIIKTNSTGQLDIRPLTSSDTVN + VDISQSTDSIAVYGSDGTANHALLTDSAGILQVNNTRTFTTATLTTLETTDSYQYTTQ + QEIAQLNTYQFFVKNTGDTNSVTLVVELSPNGTDWVVDSDERPITFGAATIITSNKFL + RYIRLGYKSTSTGASTTISAIFQGQG" + gene complement(3954747..3954822) + /locus_tag="Ccel_R0080" + /note="tRNA-Pro2" + tRNA complement(3954747..3954822) + /locus_tag="Ccel_R0080" + /product="tRNA-Pro" + gene 3955127..3955846 + /locus_tag="Ccel_3405" + CDS 3955127..3955846 + /locus_tag="Ccel_3405" + /inference="protein motif:PFAM:PF01171" + /note="PFAM: PP-loop domain protein; + KEGG: cth:Cthe_2181 ATPase" + /codon_start=1 + /transl_table=11 + /product="PP-loop domain protein" + /protein_id="ACL77693.1" + /db_xref="InterPro:IPR011063" + /translation="MVSIQRILGQMRRVVQDYNMIEDGDRIAVGVSGGKDSMTLLTAL + RQLQNFYPKKFELEAISLTMGIGNADFTPVVEYCKKIGVNYTIEETLIGKIIFEVRNE + KNPCSMCANLRRGALHNKAKTLGCNKVALGHHRDDAVETLLLSTFYEGRIHTFSPVTY + LDRKDLYLIRPLIYTEEKQIKSVVKSESLPIVKSPCHVDGKTKRQFIKDLILDLQKDN + REIKSNLFGAIKRAEIDGWHE" + gene 3955948..3958806 + /locus_tag="Ccel_3406" + CDS 3955948..3958806 + /locus_tag="Ccel_3406" + /inference="similar to AA sequence:KEGG:Cthe_2182" + /note="KEGG: cth:Cthe_2182 Ig-like, group 2" + /codon_start=1 + /transl_table=11 + /product="Ig-like, group 2" + /protein_id="ACL77694.1" + /translation="MKKYIRKSFALLVILATLLTSFSGVSAAQQLISQTVEKQTITSG + VTLESYDRFTTSGWIKSYVLRVDLSNKNVKVDTLVNKKSVVGYSTVLNLAKNSGAIAA + VNGSFFDFGPSGSGKGYTYGPVVSSGEIDLAATRDSKDTATFSLNDVNEALFTYWNTK + VELVTPKGERKVAASYNRYNGKFNGMSIVDSKWGAKTPGATSNYPYWIEMVVEDGIVK + EFNENKPSMDMPKNGFVVLGAGSHIQYLKDNFNVGDPVEYNITMNVDTNNMKMALTGG + AMLVKDDKVLTSFSHNPVSPSTRASRTAIGTSKDGKTLIVAAVDGRSSASIGMTQSEL + ASYMHELGCANALNLDGGGSTTLVARKQGTTGLSVQNRPSDGSQRGVGASLGIFSVGP + QGPVDSLYITSYEDYVFVNTSRAFTARGMDKYMNPVNINPKDIKWSVSGVKGTFKGNV + LYPTTAGEAVVTAKIGDNVVGTCPITVLESPSKLEMNYDTLNVNPGSSITFSVKGWDK + NGYTASIPPANIKWSTGGNVGNVSSSNVFTANKSGGTGYVAATVGSAVVSCPVSIRKS + GLTKVIQDFNSTGIKLITSPNSAKASYSMASNVYKSAKNSAKITYDFSKDVNVNRTAY + LTLPNGGYTLESSTSKLGMWVYSSAKKPIWIGATVHDSKGNYSSEYFAKGITWTGWKY + LEVSLDNLNTPKKITNVFAVQPKSGKSSGTVYFDDLTMVYTGYPAVDMTKVPKTTVPK + DDNYKESTVSGTDSMTFSVFGQSTAYSSSNKTQIDMLNTLASRINSSVDVSVLVGSND + GLTRSSIKIPQLATTASYKSLDINGNRLIQLNTSKGGIRATNTNEWLWLNNQLKTFDG + KNLFVFLMEDPIKFNDTKEGQLLKDTLSNYQKETGKNVWVFYKGNSNSSYMDKGVKYV + VTAGFDSYGFSDSNKSAAKYAVVKVKGTSITYQFKSFN" + gene complement(3958886..3959758) + /locus_tag="Ccel_3407" + CDS complement(3958886..3959758) + /locus_tag="Ccel_3407" + /inference="protein motif:TFAM:TIGR01099" + /note="TIGRFAM: UTP-glucose-1-phosphate + uridylyltransferase; + PFAM: Nucleotidyl transferase; + KEGG: cth:Cthe_2183 UDP-glucose pyrophosphorylase" + /codon_start=1 + /transl_table=11 + /product="UTP-glucose-1-phosphate uridylyltransferase" + /protein_id="ACL77695.1" + /db_xref="InterPro:IPR005771" + /db_xref="InterPro:IPR005835" + /translation="MKVRKAIIPAAGLGTRFLPATKAQPKEMIPIVDKPTIQYIVEEA + VAAGIEDILIISGRNKRAIEDHFDKSYELEEELHRKGKLDLLSVVQEISNIANIHYIR + QKEAKGLGHAIYCAKSFIGNEPFAVMLGDDIVDSPVPCIKQLMDVYNEYQTTILGVQK + VPLQDVTKYGVIGGTQIDESVYKVKGLVEKPEVEQAPSNIAILGRYIISPRIFEFLET + AVPGKNGEIWLTDALQKLMEQEAMYAFDFAGDRYDVGDRIGFLKATVEFALKREDLKD + DFTAFLRHKMEQLP" + gene 3960144..3960695 + /locus_tag="Ccel_3408" + CDS 3960144..3960695 + /locus_tag="Ccel_3408" + /inference="similar to AA sequence:KEGG:CLD_3208" + /note="KEGG: cbb:CLD_3208 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77696.1" + /translation="MNSSKIRKITTMGVLVAISVILIVSPLKFPFPSAPFLVYDAADV + SIIIGGFIFGPTQGIILTIVTAVVQTMSDSSGGGWIGCVMHIVATSALVCTSSVIYSR + KRTLKSAVIGLTLGSLAMTVLMIPMNMIFYPLFAGTPVDAVIKMMVPALLPFNLMKAG + LNSVIALLLYKSSGRLLRQIALK" + gene 3960858..3961226 + /locus_tag="Ccel_3409" + CDS 3960858..3961226 + /locus_tag="Ccel_3409" + /inference="similar to AA sequence:KEGG:PFE1095w" + /note="KEGG: hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77697.1" + /translation="MSHRHHKPIIIILLMQQLRGDIGMEFCNKCGSLKINGNCTNKKC + DQHVKSMVEMATTQQIEYIKELAEQLNEDISDMNFENMTKNDASYLIDDYVERLDDSD + KKLIAEDEILDDDETDEEEE" + gene complement(3961510..3963429) + /locus_tag="Ccel_3410" + CDS complement(3961510..3963429) + /locus_tag="Ccel_3410" + /inference="protein motif:PFAM:PF00933" + /note="PFAM: glycoside hydrolase family 3 domain protein; + KEGG: acl:ACL_0715 glycosyl hydrolase, family 3" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 3 domain protein" + /protein_id="ACL77698.1" + /db_xref="InterPro:IPR001764" + /db_xref="InterPro:IPR002772" + /translation="MSLKGLGRVLLTTLLAMSLCCCSNTGSNTRKVSNKPYISTNSGN + NSEVTAIYNKQKSIKDNISAYISKMTLEEKVGQMIMAEKDYISAHDVKTYGVGCVFAE + GGSAPKDNNPDGWRSMIETYKKAANDSRLSIPLLFATDAVHGNNNMKDTIIYPHNISL + GATRNGKLTRQIGAAVADELKAIGVDWTFSPCVAVSNDIRWGRDYECFSETPDLVTMM + ATALITELQNKGIIACAKHYVADGAVEFGSGTNGLLDRGNTNISTEELKDKYISVYKD + AVKSGVKTIMVSYSSIKGRKNHSERDLIEYKLKQDIGFQGIVISDYEGVEYLDGNSLY + TKVVNAVNAGIDVLVEGKRWKETYKCLLEAASQKRQDVNMDRIDDAVSRVLRVKMETG + KFEGKDVTNKNYKLRQTSNVQLAEQAVKESLVLLKNKRKILPLKKSDKVAVIGPASDN + IGVQCGGWTKTWQGGLDDGDEKWMSGTTILDGFKEMADKGGGLIITDPSRVKEADVVL + AVLGEHPYAEGKGDEKALGLSDGLAFKENAEVLRIAYQSNKPIVVILVSGRPRIITNE + INKWDAMVEAWLPGTEGRAVAQVIYGENCNFKGRLPVSWPKSVEQLPITIEKLDNNEV + YDALFQYGFSLKYSN" + gene 3963560..3964483 + /locus_tag="Ccel_3411" + CDS 3963560..3964483 + /locus_tag="Ccel_3411" + /inference="protein motif:PFAM:PF07446" + /note="PFAM: GumN family protein; + KEGG: sru:SRU_0130 GumN protein" + /codon_start=1 + /transl_table=11 + /product="GumN family protein" + /protein_id="ACL77699.1" + /db_xref="InterPro:IPR010891" + /translation="MKRILPIVALILILCLTLTLASSASTEVLYTQNSHVSMWKITSR + ITASEGNIMYLLGSLSVSEKSIFPLENQLEKVYEECSKIVVETDISKTTQDQTVTALL + KYGLLSKTTIDKVLTKEQYTKADNLIKKYTLNKKSLSAYKSFMPWVIDSLIANLAFSN + SQNFIQNPVTSYFLEKAKKDGKSIVELESPNSQLKRLSSMSYSLQGAMLENTIMFAEK + GPETVKNATELWKDGDIEGLNELYTFYKGSQAAAYNTFLIEKNKKVCEYIIKCLKSGG + KYFTITDISMLTGKSGIINMLKEKGYKVEQQ" + gene 3964636..3967110 + /locus_tag="Ccel_3412" + CDS 3964636..3967110 + /locus_tag="Ccel_3412" + /inference="protein motif:PFAM:PF06165" + /note="PFAM: putative carbohydrate binding; + glycosyltransferase 36; glycosyltransferase 36 associated; + KEGG: dth:DICTH_0484 N,N'-diacetylchitobiose + phosphorylase" + /codon_start=1 + /transl_table=11 + /product="glycosyltransferase 36" + /protein_id="ACL77700.1" + /db_xref="InterPro:IPR009342" + /db_xref="InterPro:IPR010383" + /db_xref="InterPro:IPR010403" + /translation="MNFGHFNPVNKEYVITRPDTPAPWCNYLGSVDYGAIISNNATGY + SFVKSGAAGRIIRFRLNSMSNDQPGRYIYIRDNADGDYWSGSWQPVCKSIDSYKSECR + HGTAYTIISSSYKDIETRTLYYVPLDKNYEVWNIRIKNSSNNKRHLSIYGTAEFTNHD + HYENDTVNLQYSQFISKTYFKDNHILQVINENGSEASSDVEGTSNKKGDPIYRFFGLA + GQSVSAFDGERDMFIGNYRNYGNPVAVELGKCSNTVAYNGNSFGALQTDIELNPGEET + EMTFLLGAGNEDFARNIISKYDSVEKANICSCEGFCNFSEVVSHELTQLKNFWHSRLD + NLQVETPDDNFNNMLNVWNAYQCFITFFWSRAASFQYCGLRNGLGYRDTVQDIQGIIH + LDYKAAKERLWLMLSGQVLNGGGLPLVKFDHKPGQEATPDESQYAKETGQSFYRADDA + LWLFPTVITYIKESGDWNFIDEKVPYADKGEATVYAHLKQAIQFNLDRQGSHGLPVGL + FADWNDCLRLGSKGESLFVTFQLYYALKIFKEFATKKDALADIEWAQNCLNELSGNIQ + KFAWEGDQFVRGFTEDGYTIGSKSNSEASLWLNPQVWSVISGAADEKTAKTVLDKVYD + NLNTKYGAMLFYPAFREYGLPVARMSLFNAGTKENAGIFSQPQGWVILAETIIGNGNR + AYEYFTEINPAAMNDHAEIRKLEPYIHGQATEGIDTLNHGRSHVHWLTGTASTVMVSM + VYGILGLQPEYNGIKINPCIPSGWKNFKMNKVFRNTVLNITVDNSQGVEKGVHYITVN + GKRIDGCYISADELKDTNEILVVMGK" + gene complement(3967161..3967997) + /locus_tag="Ccel_3413" + CDS complement(3967161..3967997) + /locus_tag="Ccel_3413" + /inference="protein motif:PFAM:PF00950" + /note="PFAM: transport system permease protein; ABC-3 + protein; + KEGG: cpy:Cphy_3489 ABC-3 protein" + /codon_start=1 + /transl_table=11 + /product="ABC-3 protein" + /protein_id="ACL77701.1" + /db_xref="InterPro:IPR000522" + /db_xref="InterPro:IPR001626" + /translation="MDQIYKLLDIVLPFSWLGYEFMKNAFLAVLLIAPVFGILGTIIV + NNRMAFFSDALGHGAFTGIAIGTAIGIFQPMWSAIAFSIAFSILITIVKNKTKTSTDT + VIGVFSSAAISLGVVLMYSGGSGKYSSVLVGDLLSISAGEVGLLLIIAIVIIVLWLMF + YNKILLVSLNQSLAKSRGINTMAVELAFTSAIAVAVTVSIQWIGLLIINSLLVLPAAA + ARNVSTNARQYNIIALLISFTSSIGGLILSYYLDTATGATIVIIAAVIYFITLGLRKR + FI" + gene complement(3967997..3968806) + /locus_tag="Ccel_3414" + CDS complement(3967997..3968806) + /locus_tag="Ccel_3414" + /inference="protein motif:PFAM:PF00005" + /note="PFAM: ABC transporter related; + SMART: AAA ATPase; + KEGG: cpy:Cphy_3490 ABC transporter related" + /codon_start=1 + /transl_table=11 + /product="ABC transporter related" + /protein_id="ACL77702.1" + /db_xref="InterPro:IPR003439" + /db_xref="InterPro:IPR003593" + /db_xref="InterPro:IPR017871" + /translation="MDEFIGKHRGNCENSMGCCGYCCTKIENFGVKVGRTQILQNVNL + HLHCGELTAIIGPNGAGKSTLLKSILGEIKHEGSVVFAGANGEAAGRPVVGYVPQQLE + FDTAAPLSVRNLFTSCMSRKPAWQGVSKKLNKRIIDCLDRVQSEKLIDKRLGALSGGE + LQRVLLALALEPIPQLLLLDEPVSGVDRKGLEVFYEIVSKIRKEYDLTIILVSHDLDL + VRKHADRVVLLNRTVILNGTPEEVYTNKRMHETFGFSSILGNEADENGGGK" + gene 3969090..3971078 + /locus_tag="Ccel_3415" + CDS 3969090..3971078 + /locus_tag="Ccel_3415" + /inference="protein motif:TFAM:TIGR00232" + /note="TIGRFAM: transketolase; + PFAM: Transketolase domain protein; Transketolase central + region; + KEGG: ctc:CTC01332 transketolase" + /codon_start=1 + /transl_table=11 + /product="transketolase" + /protein_id="ACL77703.1" + /db_xref="InterPro:IPR005474" + /db_xref="InterPro:IPR005475" + /db_xref="InterPro:IPR005476" + /db_xref="InterPro:IPR005478" + /translation="MSMIDTACINTIRVLAAEAIQKASSGHPGLPLGAAPTAYTVWAK + HMKHNPKNPQWPNRDRFVLSAGHGSAMLYSMLHVFGYDVSMEDLRNFRQFNSKTPGHP + EYGHTPGVEITTGPLGQGIANAVGMAMAEEFMAAKFNKDGYKIVDNYTFALSGDGCLM + EGVASEAASLAGTLKLGKLILLYDSNNITIEGNTDIAFTEDVAKRFDAYGWQVLNVED + GNSVEDISTAIAKAKADTSAPSIIIINTQIGYGSPKAGSSSVHGEPLGEEGLAKTKEF + LGMCKDDCFNVSEEVSAYMKELVDSGIKAENEWNEMFKKYAAEYPGLAKEWEMWHNDS + YEEMLLNDADFWKADAKPNATRSISGNLINYLAQRIPNLIGGSADLAPSNKTAMKGVG + DFSAQDYSGRNLHFGVREHGMAAIANAMAVYGGLKTYCATFFVFTDYMKGAMRLSALM + NTPVTYVMTHDSIGVGEDGPTHQPIEQLASIRSIPNFIDFRPADANETAAGWFTAVTN + QSSPTCLVLTRQNLPVLDIDGKVALKGAYTLLDSKNSTPEIILIATGSEVHVTLEAGK + QLQAEGIDARVVSMPSMELYERQSAEYKESVLPSSVANRVAVEAATSFGWHKYVGLKG + EVISIDTFGASGPADQLFKHFGFTTENVVAKAKAVLAK" + gene 3971286..3971756 + /locus_tag="Ccel_3416" + CDS 3971286..3971756 + /locus_tag="Ccel_3416" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: cbt:CLH_3078 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77704.1" + /translation="MGYQILGKRGLSQIMEVLCTVFQVFGVILIATLPWTLNYYLLLK + NTTVGPRIYYSMMILLVISGICAFTILIQAKKVLHNINTKSPFTFDTANRIKSISYLC + LPIAFAYFIGVFFIPSVFVILVGLTFLFLAACIFIIAELFFQAVKYKQENDLTI" + gene 3971772..3972005 + /locus_tag="Ccel_3417" + CDS 3971772..3972005 + /locus_tag="Ccel_3417" + /inference="protein motif:SMART:SM00530" + /note="SMART: helix-turn-helix domain protein; + KEGG: gtn:GTNG_0162 DNA-binding protein" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, XRE family" + /protein_id="ACL77705.1" + /db_xref="InterPro:IPR001387" + /translation="MPIVVNVDVMLAKRKMSSTELAEKIGITTANLSILKTNKAKAIR + FSTLEEICKALNCQPGDILEYVPSKEKNTETSE" + gene 3972037..3973608 + /locus_tag="Ccel_3418" + CDS 3972037..3973608 + /locus_tag="Ccel_3418" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: ckl:CKL_3399 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77706.1" + /translation="MENKETISGTPGSPVPPPYYASYVPRNKKPEYQGFKSLVTSSKG + LTISVLSIALCILFLETIFYQSPGIAAPIYLSAFYYSLYYFFRENNTPINRTAILLAI + PAMLMAVSFFIHYNPSTRWITWLTLIGIICIQLILLGNLKINSIFSLDTFVKVIINLF + AKPFTNLAMPFHSFGILKNKKSTTVKNLFYVLLGIIIAIPVAAILMGLFVRADAVFAA + SVKSFKTFIGLDLGRITLDIFLGLPAGIFLGAALLGLKYEKHKEKTLKNVDGCINTII + TGTFLSIINIFIIAFVGFQFMYLFGGSDNIKITGLSYAEYARRGFFELCTASAIIFAI + ALFVIGMTKKTNGKLPLWVSLGTVILCAGDGILLISAVKRMFLYISAYGLSIKRVLTL + WLMAVIGLCLLWMIIKCFKIGIDVKKWIGITIIVGVCILSLINIEKIIADYNVDSYLK + NPDNPTIVHYLDQLSFTATPQLEKLKDLSESQKTDIKLNEIIENKKSQLDGRNKLYGF + TLDSIEASKVLNKSK" + gene 3973627..3974031 + /locus_tag="Ccel_3419" + CDS 3973627..3974031 + /locus_tag="Ccel_3419" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77707.1" + /translation="MKQKSNMILGLYDLVLAIAAIVIGLQMLQSNSGIFSEYPKEWLY + KLPFTSWVQPGIIAILLFGAGNIFSAIMCFKNSFNMSWLSSALVGLMLLLCVITQVTI + LGEWYLPSVEFFAAGVIQIFISIFALATRKFS" + gene 3974126..3975415 + /locus_tag="Ccel_3420" + CDS 3974126..3975415 + /locus_tag="Ccel_3420" + /inference="protein motif:PFAM:PF05673" + /note="PFAM: protein of unknown function DUF815; + KEGG: cpy:Cphy_1275 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF815" + /protein_id="ACL77708.1" + /db_xref="InterPro:IPR008533" + /translation="MYINTNELILYKHFHRSDIFEDISWVINNYQSKAFSKENVKTRL + YEGLHKLIEFSVDHCFDGNLFHSYLTYVLITNENAFARACEISGKPSGTINDLALSDF + RIFRKLYDFDLSLIDVVLQVQCFSIVTSYMPSDICKNRNKGIPYFKELVNNLSTSENE + ESFYAILTEFYRKFGVGLLGLNKAFSVIHYENDIKLKPITNIESVLLNDLVGYEAQKK + ELVMNTEAFVQGRKANNVLLYGDSGTGKSSSVKAILNEYYKHGLRMIEVYKYQMKDLP + LIIGHIKYRKYKFIIYMDDLSFEDHETDYKYLKAVIEGGLEAKPENVLIYATSNRRHI + IREKWSDKNDRDDDLHTNDTVQEKLSLSARFGLPILYIAPSRKEFLHIVKVLADKYRI + NIPEEELYLEANRWELRNGGLSGRTAQHFITYLLGKK" + gene 3975550..3976770 + /locus_tag="Ccel_3421" + CDS 3975550..3976770 + /locus_tag="Ccel_3421" + /inference="protein motif:PFAM:PF00246" + /note="PFAM: peptidase M14 carboxypeptidase A; + KEGG: cbf:CLI_1470 zinc carboxypeptidase family protein" + /codon_start=1 + /transl_table=11 + /product="peptidase M14 carboxypeptidase A" + /protein_id="ACL77709.1" + /db_xref="InterPro:IPR000834" + /translation="MSKRIKVFILAVIYSLTAFSTFSVQASKVTYSKSLQQIYKSRDV + YKDTQKRLSEFNKNYSNITYLFSAGKSVQKRDLSVLKIGNGSKKIFINAAHHPREYIG + TILTLNQIQNLLESYANNGSIDGQKIRNLLDKQVTFYFMPLVNPDGVQICINGTQSYY + FNANKVDLNHNYDALWSKKITSTYSTGAKPFSEPETQAVRDLCLNIEFDLTIAYHAAG + DIIYWYFGQQGADRTRDLAYANILKTTTGYSLVSSANYKSSTSGFKDWCVQKLKIPSF + TIEIGGKRGIIKPVEWSYYNTIWKQNKLVPVRVAKQLMKQTKFNGDKTTALIYKNSLF + RQGQILSVNGKQYIAEKAVPMLAGKLSINQQNKLNKTKISIKKTPYLRLETLAECLNL + KFKFEKTSNTVYIS" + gene 3976853..3976957 + /locus_tag="Ccel_3422" + CDS 3976853..3976957 + /locus_tag="Ccel_3422" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77710.1" + /translation="MGDKGSTKKAPKMSKKEARAAKIAARGNKGSENS" + gene complement(3977028..3979310) + /locus_tag="Ccel_3423" + CDS complement(3977028..3979310) + /locus_tag="Ccel_3423" + /inference="similar to AA sequence:KEGG:Amet_1004" + /note="KEGG: amt:Amet_1004 superfamily I DNA helicase" + /codon_start=1 + /transl_table=11 + /product="superfamily I DNA helicase" + /protein_id="ACL77711.1" + /db_xref="InterPro:IPR014016" + /translation="MSAANHPAYKEELERCRYTLDYIEKSLKRALEKREKIGNELESV + KKHMSGDSSADYTSIMVNTMLHDTLALKVKNLYTARGKPYFARVDYKESGVDSAEKLY + IGKMSLSRDEDHVIVIVDWRAPIANLYYEGRLGPSSYDCPDGLIEGELLLKRQFSIND + GNLDGIFDIDITTNDEFLQTYLGANAENRLKEIVSTIQEEQNRIVRAPMWKPLIVQGV + AGSGKTTIALHRIAYLIYTFEKNFDPENFMIIAPNRLFLNYISEVLPELGVERVKQTT + FEDFSMELIGKKFKLIDSNEKLNMFVNHNVTEEQIVYNNKVRNASILKTSMDFKNIID + EYLKEIELCFIPKKDIMLGTKVIFPYEEINKLFLTQYGMWPIAQRMNEIKKSITTRLK + ASKEQFIQQIHAECDKKVARARVAISDASERQKYILQAFEKRDSVLDKIEMASKSLVK + EYIGSLPKLSPYQYYVDLMNNAEVFDRIAGKYTDAEICSFTRDYTLDILNSKRIEQED + LAPIIYLKYKIYGMDEKIPVRHIVIDEAQDFSAFQFYVMKKIVKDSSFTILGDLCQGI + HFYRGVRSWDEIVNDVFDGKRCEFLTLEQSYRTTYEIMEAANSVMEKLPNNDLTRAKP + VIRHGDPVEYIPKNDIANVAEDIVNKIEQAKRQGHKTIAIICKTMEECYQMLPLIKKA + DKNISIITGNEKEYKSGIVVVPSYLSKGLEFDVVLISNASSVNYTTSDLDIKLLYVAM + TRPLHKLCVYYIGDKASLLQ" + gene complement(3979462..3979577) + /locus_tag="Ccel_R0081" + rRNA complement(3979462..3979577) + /locus_tag="Ccel_R0081" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(3979828..3982871) + /locus_tag="Ccel_R0082" + rRNA complement(3979828..3982871) + /locus_tag="Ccel_R0082" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(3983390..3983465) + /locus_tag="Ccel_R0083" + /note="tRNA-Ala5" + tRNA complement(3983390..3983465) + /locus_tag="Ccel_R0083" + /product="tRNA-Ala" + gene complement(3983643..3985283) + /locus_tag="Ccel_R0084" + rRNA complement(3983643..3985283) + /locus_tag="Ccel_R0084" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(3985943..3986554) + /locus_tag="Ccel_3424" + CDS complement(3985943..3986554) + /locus_tag="Ccel_3424" + /inference="protein motif:PFAM:PF08241" + /note="PFAM: Methyltransferase type 11; Methyltransferase + type 12; + KEGG: rci:RCIX2497 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="Methyltransferase type 11" + /protein_id="ACL77712.1" + /db_xref="InterPro:IPR013216" + /db_xref="InterPro:IPR013217" + /translation="MSHMSRIKKYYEDNYLEGYPDYYIQGWENKTAQEMRFRELVGRI + DLNNKRILDVGCGTGNLLEYISKRFTAFEYTGVDILPHMVNIATEKKLKGKFICMDLF + KNNPFQDKSVDVIFSSGIFNLNLGNNKEFLIDALNVFQQLSNGTIAFNLLWDKSPDRE + DKYFYFDPDKVKGLLTEKYGGYWTVSILKGYLNNDFTVILEEK" + gene complement(3986585..3987544) + /locus_tag="Ccel_3425" + CDS complement(3986585..3987544) + /locus_tag="Ccel_3425" + /inference="protein motif:PFAM:PF02826" + /note="PFAM: D-isomer specific 2-hydroxyacid dehydrogenase + catalytic region; D-isomer specific 2-hydroxyacid + dehydrogenase NAD-binding; + KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid + dehydrogenase, NAD-binding" + /codon_start=1 + /transl_table=11 + /product="D-isomer specific 2-hydroxyacid dehydrogenase + NAD-binding" + /protein_id="ACL77713.1" + /db_xref="InterPro:IPR006139" + /db_xref="InterPro:IPR006140" + /translation="MKIVVLDGYTLNPGDISWDAMGQLGELVVYDRTPAEKIIERIDN + AEIVLTNKVNLTKDILEKTPSVKYIGVMATGYNVVDTEYAKEIGIVVTNVPAYSTDSV + AQLVFAFILEFCHHVGEHSRVVHEGKWTKSHDFSFWDYPLIEIKNKTLGIIGFGAIGQ + KVAQIACAFGMEVLCYSRTQKPDYENENIKFAPFDDVLAKSDFISLHCPLTEETKGLI + NKKAISKMKEGAFLINTSRGPVINEQNVAEALNTGRLAGLGTDVVSVEPIQVDNPLLS + AKNCIITPHFAWAPKEARNRLMNTLISNIIAFIEKNPVNVVNR" + gene complement(3987858..3989183) + /locus_tag="Ccel_3426" + CDS complement(3987858..3989183) + /locus_tag="Ccel_3426" + /inference="protein motif:PFAM:PF02056" + /note="PFAM: glycoside hydrolase family 4; + KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 4" + /protein_id="ACL77714.1" + /db_xref="InterPro:IPR001088" + /translation="MVKITFMGAGSTVFAKNVLGDSMCSEALADCEIRLYDIAGDRLK + ESQIMLEAINRNINGGRAKIKTYLGVENRKEALRNADFIVNAIQVGGYDPCTIIDFEI + PKKYGLRQTIADTLGIGGIMRTLRTIPVLEDFARDIEEVCPNAWFLNYTNPMAMLTGY + MQRFTGVKTIGLCHSVQVCSQDLMKSLGMEDRLEGRKELIAGINHMGWLLEICDKNGN + DLYPEIRRRAKEKNQNEKHSDMVRYEYIDKLGYYCTESSEHNAEYNPFFIKSSYPELI + DKFNIPLDEYPRRCIEQIQEWNKRRDELMNNEYLTHERSNEYASYIMEAIVTNKPFKI + GGNVINKGGLIENLPHEACVEIPCMVDGMGINPCRVGRLPVQLAAMNMTNINVQLLTI + EAAATRKKEHIYHAAMLDPHTSAEMTLDNIVKMVDELIEAHGSWLPKFK" + gene 3989337..3989978 + /locus_tag="Ccel_3427" + CDS 3989337..3989978 + /locus_tag="Ccel_3427" + /inference="protein motif:PFAM:PF00881" + /note="PFAM: nitroreductase; + KEGG: cth:Cthe_3037 nitroreductase" + /codon_start=1 + /transl_table=11 + /product="nitroreductase" + /protein_id="ACL77715.1" + /db_xref="InterPro:IPR000415" + /translation="MENNLYDLAVKRRSIRKFKETPIPHEDIEYFISCAVNAPSGCNS + QCWHFVAVEDKTLIERLAEETAKGAREFYGTGFPEATEEFLISREKATSFFRNAPLVI + FVFLDRMDYYDERVSKAFSAKGFSKRQMLDTLAYPDILSIGATVQNMLLAIAEKGYGA + CWMNDPVIGENRIKNLLQVRNDLRLISVVPIGIPNYVPREKKLKNMSEVIEYR" + gene 3990000..3990797 + /locus_tag="Ccel_3428" + CDS 3990000..3990797 + /locus_tag="Ccel_3428" + /inference="protein motif:PFAM:PF02311" + /note="PFAM: helix-turn-helix- domain containing protein + AraC type; AraC protein arabinose-binding/dimerisation; + KEGG: cpr:CPR_0474 AraC family transcriptional regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, AraC family" + /protein_id="ACL77716.1" + /db_xref="InterPro:IPR000005" + /db_xref="InterPro:IPR003313" + /translation="MHNIPLLNKGFEEVNPLICGWQSCDKGHFFGPASREYYLIHYVV + SGSGVFERAGKRYPLSKDCLFLIRPYELTFYKADKENPWEYIWIGFDGSLVPDLLKNS + GFSDDICTMHIPSLSTTFLSMKEVENLQHSSEIFLCGKIFEMFSYLSEEFSPTPKGST + TSVYCKRAKDYIMSNYANHISVESIANMLGIDRRYLCRIFYKYTGSTPQNFIVNYRLE + KAAFLLSKHGYTVAEAGRSTGYDDIYNFSKMFKKKYGVPPSRYKNDS" + gene complement(3990923..3992242) + /locus_tag="Ccel_3429" + CDS complement(3990923..3992242) + /locus_tag="Ccel_3429" + /inference="protein motif:TFAM:TIGR02630" + /note="TIGRFAM: xylose isomerase; + PFAM: Xylose isomerase domain protein TIM barrel; + KEGG: cdf:CD3064 xylose isomerase" + /codon_start=1 + /transl_table=11 + /product="xylose isomerase" + /protein_id="ACL77717.1" + /db_xref="InterPro:IPR001998" + /db_xref="InterPro:IPR012307" + /db_xref="InterPro:IPR013452" + /translation="MSEVFSGISNIKFEGSGSDNPLAFKYYDPKAVIGGKTMEEHLRF + AVAYWHTFAAPGADMFGAGSYVRPWNTMSDPLEIAKYKVEANFEFIEKLGAPFFAFHD + RDIAPEGDTLAETNKNLDTIVSVIKDRMKSSPVKLLWGTTNAFGNPRFMHGASTSPNA + DIFAYAAAQVKKAMEITKELGGENYVFWGGREGYETLLNTDMKLELDNLARFLKMAVD + YAKEIGFDGQFLIEPKPKEPTKHQYDFDTATVIGFLKTYGLDPYFKMNIEANHATLAG + HTFQHELAMCRINDMLGSIDANQGDVMLGWDTDQFPTNLYDATLAMVEVLKAGGLKKG + GLNFDSKVRRGSFEPSDLFYGHIAGMDTFAKGLIIANKIVEDGKFDAFVADRYSSYTN + GIGKDIVEGKVGFKELEQYALTAKIQNKSGRQEMLEALLNQYILETK" + gene complement(3992304..3993503) + /locus_tag="Ccel_3430" + CDS complement(3992304..3993503) + /locus_tag="Ccel_3430" + /inference="protein motif:PFAM:PF00480" + /note="PFAM: ROK family protein; + KEGG: csc:Csac_0695 ROK family protein" + /codon_start=1 + /transl_table=11 + /product="ROK family protein" + /protein_id="ACL77718.1" + /db_xref="InterPro:IPR000600" + /translation="MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPT + ACGTIVTNLLDKGYIREAGIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDI + TGQVEFKDRISCDFARAASESIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLT + HEIIFAPNLGWERVNLEHMMDRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINM + KSGIGSSIFAAGNLYRGCCGSAGEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKA + QKLVRQGLITDFEDIEAITVDEIFRLAREGNESARVILVEAAGYLGLAIANLINTVNP + SKIVLGKELAKFSEDIVDHLKSIASAKALKYPASRVQVVVSKIGEDTSALGAAIIPVK + KLFGYRL" + gene complement(3993555..3995084) + /locus_tag="Ccel_3431" + CDS complement(3993555..3995084) + /locus_tag="Ccel_3431" + /inference="protein motif:TFAM:TIGR01312" + /note="TIGRFAM: xylulokinase; + PFAM: carbohydrate kinase FGGY; + KEGG: cdf:CD3065 xylulose kinase" + /codon_start=1 + /transl_table=11 + /product="xylulokinase" + /protein_id="ACL77719.1" + /db_xref="InterPro:IPR000577" + /db_xref="InterPro:IPR006000" + /translation="MSFLIGIDLGTSGVKTVLFDEAGKPVASSTVEYPLYQPNLGWAE + QDPEEWWKGTCESINNVMLKSGVDKREVKGIGLSGQMHGAVLLDKDDKVLRNAIIWCD + QRSAAECDEITDLIGRERLIEITANPALTGFTASKIMWVKNNEPQIFEKIAKILLPKD + YIRFRLTGEYATEVSDASGMQLMNIAKREWSIEVLDKLGLSTSMLGKMYESQEVTGKV + TSSAADQTGLNAGTIVVGGGGDQAAGAVGNGIVKSGIVSSTIGTSGVVFAYTDKLTID + PLGRVHTFCHAVPNTYHVMGVTQGAGLSLKWFRDNFCMEEMMTSELSDIDVYKLLDAE + AETIKPCSDGLVYLPYLMGERTPHLDPNAKGVFFGLTAKHTKPHFIRSIMEGVTFSLR + DCLEIIKGMGVDVSEVRASGGGGKSGIWRQMQADVFGTNINRIRSDEGPALGVAILAG + VGAGIYDSVPQACEEVIKVKDTLAPVEDRIKKYDDFYKLYTKLYKSLKDDFNQLSTIL + K" + gene complement(3995380..3995637) + /locus_tag="Ccel_3432" + CDS complement(3995380..3995637) + /locus_tag="Ccel_3432" + /inference="similar to AA sequence:KEGG:Cthe_2520" + /note="KEGG: cth:Cthe_2520 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77720.1" + /translation="MKLYGRIIKQGKLISEAWAEPHGPSTDFRDQLEECLIQVCKQLD + IEVPIWLKKNTTDFGLYRKTSFNSDHFGEEIKFDRLEITLY" + gene complement(3995749..3997311) + /locus_tag="Ccel_3433" + CDS complement(3995749..3997311) + /locus_tag="Ccel_3433" + /inference="protein motif:TFAM:TIGR00977" + /note="TIGRFAM: 2-isopropylmalate synthase/homocitrate + synthase family protein; + PFAM: pyruvate carboxyltransferase; LeuA allosteric + (dimerisation) domain; + KEGG: cth:Cthe_2519 alpha-isopropylmalate/homocitrate + synthase family transferase" + /codon_start=1 + /transl_table=11 + /product="2-isopropylmalate synthase/homocitrate synthase + family protein" + /protein_id="ACL77721.1" + /db_xref="InterPro:IPR000891" + /db_xref="InterPro:IPR002034" + /db_xref="InterPro:IPR005675" + /db_xref="InterPro:IPR013709" + /translation="MSNNKIIMYDSTLRDGAQALGISFTVEDKLKIVSKLDELGIDYI + EAGNPGSNPKDLEFFEKVLKLKLRTSKIIAFGSTRRANIKVEDDANIQSLLSAGTEAI + AVFGKAWDFQVTDILKTTLDENFDMIYDTVKFLKEQGKTVVYDAEHFFDGYDANPEYA + IETLKRAYNAGADTICLCDTKGAGLPSYIARVTKKVREEVDCAIGIHCHNDNGMAVAG + SISAVEAGAVQIQGTINGFGERCGNANLCTIIPNLQLRMGYQCIPSDNMAYLTPTARF + VSEVANIIHDERAPFVGSCAFAHKAGMHTDAVNKNSFAYEMVNPEVVGNQRIILMSEV + AGRSAVMNIINKVDSTITKDSPETKKIIERLKELEYEGYQYEGAESSFELVIRKMLGK + YKSYFELKEFKVIVNEPTINSVNSSAMIKIVVGEQTEITAAEGEGPVNALDKALRKAL + ERFYPQIAEMKLTDYKVRVLDSNFATASKVRVLIESTDGQEVWTTVGVSTDIIEASWR + ALVDSVEHKLMK" + gene complement(3997446..3998972) + /locus_tag="Ccel_3434" + CDS complement(3997446..3998972) + /locus_tag="Ccel_3434" + /inference="protein motif:TFAM:TIGR00973" + /note="TIGRFAM: 2-isopropylmalate synthase; + PFAM: pyruvate carboxyltransferase; LeuA allosteric + (dimerisation) domain; + KEGG: csc:Csac_1145 2-isopropylmalate synthase" + /codon_start=1 + /transl_table=11 + /product="2-isopropylmalate synthase" + /protein_id="ACL77722.1" + /db_xref="InterPro:IPR000891" + /db_xref="InterPro:IPR002034" + /db_xref="InterPro:IPR005671" + /db_xref="InterPro:IPR013709" + /translation="MARTIKIFDTTLRDGEQTPGVNLNLQEKLEIAKQLVRLGVDVIE + GGFAIASPGDFESIMTLSRNLKGVTIASLCRSVEKDIDRAWEAVQYAESPRIHTFIAT + SDIHMKYKLKMTEEEVLERAVSMVKRAKGYCSNVEFSAEDASRTREEFLYRVVEAVIK + AGATTVNIPDTVGYSTPLEFGRLIRNIRNNVPNIDKADISVHCHNDLGLAVANSLAAV + ENGAVQVECTINGLGERAGNAALEEIIMGINTRKDYYDITHRIDTTQIYRASRLVSSL + TGVNVQPNKAIVGANAFAHESGIHQHGVLSEKTTYEIMTPESVGMGTNRMVLGKLSGR + HAFEDRLKEMGYSLSDEEVKTAFAKFKDLADKKKVVTDKDIEALVDENIAVPEIFVID + SFQINSGNKMISTSTVSVRKDEEIITEAATGDGPVDAAFNAVERATGVNAELVHYRIK + AVTEGKDALGEVTVKISNNNSIFMGKGVSTDIIEASVKAYLNAINRSISEIGESIISQ + " + gene complement(3999136..4000131) + /locus_tag="Ccel_3435" + CDS complement(3999136..4000131) + /locus_tag="Ccel_3435" + /inference="protein motif:TFAM:TIGR00465" + /note="TIGRFAM: ketol-acid reductoisomerase; + PFAM: acetohydroxy acid isomeroreductase; CoA-binding + domain protein; Acetohydroxy acid isomeroreductase + catalytic domain protein; + KEGG: cth:Cthe_2518 ketol-acid reductoisomerase" + /codon_start=1 + /transl_table=11 + /product="ketol-acid reductoisomerase" + /protein_id="ACL77723.1" + /db_xref="InterPro:IPR000506" + /db_xref="InterPro:IPR003781" + /db_xref="InterPro:IPR013023" + /db_xref="InterPro:IPR013116" + /translation="MAKMYYDSDCNLKLLEGKTVAVIGYGSQGHAHAQNLKDSGVNVI + VGLTPSSARRKQVEADGLKAYDTAEAAKMADIIMILVPDEKQAAMYEESIAQNLEAGN + ILMFAHGFNINFKQIVPPADVDVIMVAPKGPGHTVRSQYKEGRGVPALIAVEKDASGK + AKEYALAYASGIGAGRAGILETTFREETETDLFGEQAVLCGGVTELMKAGFETLVAAG + YQPEIAYFECIHEMKLIVDLINQGGFGEMRYSISDTAEYGDYVTGKRIITDETRKEMK + KVLKEIQDGKFAANWIIENKAAGRANFISMRRNESEHQLETVGAELRKMMSWLKK" + gene complement(4000199..4000708) + /locus_tag="Ccel_3436" + CDS complement(4000199..4000708) + /locus_tag="Ccel_3436" + /inference="protein motif:TFAM:TIGR00119" + /note="TIGRFAM: acetolactate synthase, small subunit; + PFAM: amino acid-binding ACT domain protein; acetolactate + synthase small subunit; + KEGG: cth:Cthe_2517 acetolactate synthase, small subunit" + /codon_start=1 + /transl_table=11 + /product="acetolactate synthase, small subunit" + /protein_id="ACL77724.1" + /db_xref="InterPro:IPR002912" + /db_xref="InterPro:IPR004789" + /translation="MAKHTLSVLVENRSGVLSRVAGLFSRRGFNIESLAVGVTENPEV + SRMTIVVDGDEYTVEQVSKQLNKLIDIIKIRALEKSESVSRELALIKVNATSSTRSEI + VQIVEIFRAKIVDVSKSTLTVEISGANDKVAALEEMLRQFGIKEIVRTGTIAIERGNK + YIKAGSTED" + gene complement(4000727..4002355) + /locus_tag="Ccel_3437" + CDS complement(4000727..4002355) + /locus_tag="Ccel_3437" + /inference="protein motif:TFAM:TIGR00118" + /note="TIGRFAM: acetolactate synthase, large subunit, + biosynthetic type; + PFAM: thiamine pyrophosphate protein domain protein + TPP-binding; thiamine pyrophosphate protein central + region; thiamine pyrophosphate protein TPP binding domain + protein; + KEGG: cth:Cthe_2516 acetolactate synthase, large subunit" + /codon_start=1 + /transl_table=11 + /product="acetolactate synthase, large subunit, + biosynthetic type" + /protein_id="ACL77725.1" + /db_xref="InterPro:IPR000399" + /db_xref="InterPro:IPR011766" + /db_xref="InterPro:IPR012000" + /db_xref="InterPro:IPR012001" + /db_xref="InterPro:IPR012846" + /translation="MKITGAQALVKALELENINTIFGYPGAAICPFYDALLDSDINHV + LTRNEQGAAHAASGYSRVTDKVGVCVATSGPGATNLITGIATAYSDSIPMVAITGQVS + LDLIGRDVFQEVDITGATEPFCKHNYLVKDVRDLPRIVKEAFHIASTGRPGPVLIDVP + VDIQTDILDFRYPNVVDIRGYKPNYKGHPQQIKKIAEAVSNSQRPVICAGGGVISSKA + SEIMTRLVEKYEIPVVTTLMGIGSISVDHPLNLGMLGSHGVYAANYAVHNADLLIIIG + ARVGDRALGTTGKIAEKAKIIHIDIDPAEIGKNVSTTIPVVGDAGLVLGDLYNSIQAC + NTSQWLDSLRQAVSKNKNKNTGLAQDSYVNPKKLIAELSKRLDEDAIMVTEVGQNQIW + AANNFIARKPGSFITSGGLGTMGYGLPAGIGAKIGRPESTVVVIGGDGSFQMSMPEMG + TIKQNRLGVKILILNNNRLGMVREIQKNRYRKRYSQVFLDDNPDFVKIAEAYGFKSER + ITCDSQIGEALERFLADDSAYLLECSIDPEEETV" + gene complement(4002835..4004394) + /locus_tag="Ccel_3438" + CDS complement(4002835..4004394) + /locus_tag="Ccel_3438" + /inference="protein motif:PFAM:PF04616" + /note="PFAM: glycoside hydrolase family 43; + KEGG: oih:OB2087 arabinofuranosidase" + /codon_start=1 + /transl_table=11 + /product="glycoside hydrolase family 43" + /protein_id="ACL77726.1" + /db_xref="InterPro:IPR006710" + /translation="MTKTNSNYFSNPILPGFYPDPSICRVEDDYYLVTSSFTYFPGLP + IFHSKDLVNWRQIGHALDRPSQLDLDGLEQSQGLYAPTIRYNNGIFYIACTNVGKKGN + FIITSEKPEGPWSDPYWIADAPGIDPSLFFDDDGKVYFTGTNDSPDGTYYGDNEIWMR + ELDTGKMQLTGPRYGLWRGALKNAIWSEAPHIYKINGYYYLMIAEGGTDYHHSVTIAR + SREITGPYEGYIGNPIITHRHLGRKYPIANVGHADLVETQNGEWWMVALASRPYGGHY + RNLGRETFLIPVEWEDGWPVVSPLSGKVEFSYQRPALSPDNPVEVTACDHFDNEKLSF + IWNFIRTPRENFYSLTDRPGHLRLNLKSPKIKEQKNPSFIGRRQQHINFRAKTVMEFV + PGNENEAAGILLIQSNNYHMRFECTKSGEKDVVRLIVCNDGKESIVAQRENTYTRIHM + VVQAYGQDYSFYCGDENELVELAVNVDGRILSTDVAGGFVGTYVGMFTSSNGFDSSNM + ADFDLFEYTGL" + gene complement(4004515..4004874) + /locus_tag="Ccel_3439" + CDS complement(4004515..4004874) + /locus_tag="Ccel_3439" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77727.1" + /translation="MINKVTIQKEQALNAVKNGEFDKSVIASKEIVLIVLTQDWCPQW + QAMKTWLYDSADVDVDIDIYELEYNTTDYFEEFKTFKEEQFGNPNVPYLRFYKNGTLI + EQTNYISKDRFIEIIGQ" + gene complement(4004903..4005361) + /locus_tag="Ccel_3440" + CDS complement(4004903..4005361) + /locus_tag="Ccel_3440" + /inference="protein motif:PFAM:PF00383" + /note="PFAM: CMP/dCMP deaminase zinc-binding; + KEGG: cth:Cthe_2502 tRNA-adenosine deaminase" + /codon_start=1 + /transl_table=11 + /product="CMP/dCMP deaminase zinc-binding" + /protein_id="ACL77728.1" + /db_xref="InterPro:IPR002125" + /db_xref="InterPro:IPR016192" + /translation="MYTKNEQFMLAAIQQAKEAYKNGESPVGAVIVKNGEIIAYGCNR + REEKLDVTSHAEIEALKKAAKEIGTWKLDGCDMYVTLEPCPMCAGAIIQSRIKTLYIG + AMDKKSGSAGSVVDLFRVPQFNHRVDVVYGLMFEECGTILTEFFKQLRKT" + gene 4005578..4006615 + /locus_tag="Ccel_3441" + CDS 4005578..4006615 + /locus_tag="Ccel_3441" + /inference="protein motif:TFAM:TIGR01472" + /note="TIGRFAM: GDP-mannose 4,6-dehydratase; + PFAM: NAD-dependent epimerase/dehydratase; + KEGG: gur:Gura_3210 GDP-mannose 4,6-dehydratase" + /codon_start=1 + /transl_table=11 + /product="GDP-mannose 4,6-dehydratase" + /protein_id="ACL77729.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR002198" + /db_xref="InterPro:IPR006368" + /translation="MKKALITGITGQDGSYLSEFLLDKGYEVHGIMRRSSSLNTQRIS + HLLEDKAGENALISLHFGDLSDSVSLNKLIYKIEPDEVYNLGAQSHVQVSFDVPEYTG + DVDGLGTVRLLESIREIDPCIKFYQASSSELFGKVREIPQSETTPFYPRSPYGVSKMY + SYWITVNYREAYDLFACNGILFNHESPRRGESFVTRKITKGIADILNGKTDKIYLGNI + DAKRDWGFAGDYVEAMWLMLQQKKPDDYVIATGETHTVREFCNLAFKHVGITLEWQGS + GEQEKAVDSTTGRELINISSKFFRPTEVDLLLGDPTKAKSQLKWKQKVSFEELVKMMV + ESDLKGGYSKI" + gene 4006639..4007571 + /locus_tag="Ccel_3442" + CDS 4006639..4007571 + /locus_tag="Ccel_3442" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + KEGG: mba:Mbar_A0035 GDP-fucose synthetase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL77730.1" + /db_xref="InterPro:IPR001509" + /translation="MNKESKIFVAGHTGMVGSAIVRRLQKNGYENIICKSHKELDLTD + QSSTEYFFRDEKPDYVFLAAAKVGGIHANNSYPADFIMENMLIECNVIKSSYKNGVKK + LMFLGSSCIYPKLCPQPIKEEYLLTGELEPTNEAYALAKISGIKMCQSYNKQYHTIFI + SAMPASLYGVNDRFDINNSHVIPSMIIKLHEAKINNKPYVELWGTGNPLREFLYVDDM + ADACLYLMQNYEENEFVNIGSGKEISIRKLAETLKLVIGYNGELLFDTTKPDGTPRRV + LDNTRIYKTGWRPQVDMEEGLQREYEYYLKYVVS" + gene complement(4007630..4008094) + /locus_tag="Ccel_3443" + CDS complement(4007630..4008094) + /locus_tag="Ccel_3443" + /inference="protein motif:PFAM:PF05103" + /note="PFAM: DivIVA family protein; + KEGG: cth:Cthe_0788 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="DivIVA family protein" + /protein_id="ACL77731.1" + /db_xref="InterPro:IPR007793" + /translation="MYYTPEDFKCLCIKKSLVNGYCRKQVDAILAQVGEDYISMAKES + EEIKNKIDILNETVQHYKILEESLQHSIIVAQHTSEQIKTNACEKAKNITDEAEISAK + KIIETANLEVIKAKGKLDEIKGQLYSFKTKSEALISAQLDVLQQLFSEKNNE" + gene complement(4008247..4009206) + /locus_tag="Ccel_3444" + CDS complement(4008247..4009206) + /locus_tag="Ccel_3444" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: gbm:Gbem_3741 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77732.1" + /translation="MSNSKFLLIKSLGGSIWGDVDHVICQILAAELTNRIPVVYWGME + SLYSESVDTNSFESFFEPISQYTFHDVVRPEYTYYPKVWKFENILAEDTDRFKMENRE + LNGMMRSEANVVVSDIYFPMRAILSYVRRDHWSYGKTPYQIYRYMFDNYIKLQPAINK + EIQKFLNTNPNFRDERPILGVHVREKAIVNEVAQLYDLNEFYKPNIWQYIVRYNARHL + FLITDSNTVFKQYRKLYSKNDMLIYTDSKKIPLKERVPTALLNYPNKRHKGVELIKDT + IEIIKDTYIASKCDFFIGNGYSNLSNTVLRLRDWPESNIKLLY" + gene complement(4009196..4010257) + /locus_tag="Ccel_3445" + CDS complement(4009196..4010257) + /locus_tag="Ccel_3445" + /inference="similar to AA sequence:KEGG:Gbem_3741" + /note="KEGG: gbm:Gbem_3741 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="TPR repeat-containing protein" + /protein_id="ACL77733.1" + /translation="MPSDRFLLIKAWGCGFWSDVDHVMGQLLAAELTDRIPVVYWGPN + SLYAESFKTNAFELYFEPVSNYNINDVIKYNYTYFPSVWNYNNVMIEDLDKVTWTYRN + LGEMMNSDVNVLVSDVHYFIRPLINYITKKHWAYGMTAHQIYRGLFDKYLKLKPDIEQ + EIQDFYDEKLKGKGLSLAVHIRGGDKVREVENLGRLNKRYYKEIENFNSSYDIGKILL + LTDCEDILNEFLKLYGDKVVFTDCRRGALSATQDAPHLQDYSAKRRKGIEIIKDTYLG + SKCDFFIGNGYSNVSYTIKRLKDWPEQNIILFYRDLKNEKKLARRRVKEEGNRRLLER + KNHKLEYPEFYGGVNTYVE" + gene complement(4010247..4011440) + /locus_tag="Ccel_3446" + CDS complement(4010247..4011440) + /locus_tag="Ccel_3446" + /inference="similar to AA sequence:KEGG:Gbem_3741" + /note="KEGG: gbm:Gbem_3741 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="TPR repeat-containing protein" + /protein_id="ACL77734.1" + /translation="MNMSNGRFLLIKAWSYILWADVDHVLGQLLVAELTNRIPVVYWP + THCMHNGYILTNGFELFFEPVSNYTIFDVAKPEYTYYPPIWDNDNLFIEDQNKETWVY + RNIGDLLSSEANVVVADVYYNIHELIPFVKKNHPTYGMSAQQAYRYLFSKYIKLKSDI + GSEVQIFYNSWLKGNHPILAVHVRRAAIDMIFDTRDPQKNGNQYWNKIYRKYKQIPKK + KKKKLYRLFAKGKFKEPNLGYHKEIKKYIDKYNVKKIFLLTDCEDTLKEYKEKYGTML + VYTNCKRIKNEEPVYHMENPMVVRRRGIEIIKDAYIAAKCDFFIGNDFSNVSHGVTRI + RDWADKNIKMMYWVFKKRKYPVNVMLVVKSDKPNIFIRAARRVKKIFSKFKMSKEARG + DINAK" + gene complement(4011556..4012746) + /locus_tag="Ccel_3447" + CDS complement(4011556..4012746) + /locus_tag="Ccel_3447" + /inference="protein motif:PFAM:PF00082" + /note="PFAM: peptidase S8 and S53 subtilisin kexin + sedolisin; + KEGG: cbf:CLI_3230 S8/S53 family peptidase" + /codon_start=1 + /transl_table=11 + /product="peptidase S8 and S53 subtilisin kexin sedolisin" + /protein_id="ACL77735.1" + /db_xref="InterPro:IPR000209" + /translation="MNTLPINIAVIDDGVNEKLYQTGKLAFNLEITHDLSVCNRTGYD + SFFMSHGTTCAAIIKKYSPEAVLGSIKILDSDSRTGMKAQLIWALKWCVENRIRIVNL + SLGTIDYRDFAEIKEVVDYACERNVIVVAACNNRNILTCPASLENVIGVKCDLAEVLN + EGEYTFNYASMDGIDITAFAKHSLKKHDGTNTVTGACNSYAAPFVTSQVYNLIRDNPN + IDFTEIIGKLQQEASPAGTLCVKSPEKRKEPDIPVILINNQKAGSFEKGLTGKFRGDG + FNAVCVFLNPNESDVSNICNGYIDIRRFTNQENPSIKNSFYDICGVFNPDIILFSSNN + QKSNKVQSQGIMELDPDIEICINDISIEVKSSYGIQSYSNYNNNQLEQVYSYILELFE + KEEE" + gene complement(4012835..4013887) + /locus_tag="Ccel_3448" + CDS complement(4012835..4013887) + /locus_tag="Ccel_3448" + /inference="protein motif:PFAM:PF01370" + /note="PFAM: NAD-dependent epimerase/dehydratase; + dTDP-4-dehydrorhamnose reductase; Male sterility domain; + KEGG: pfu:PF1357 UDP-or dTTP-glucose 4-epimerase or + 4-6-dehydratase" + /codon_start=1 + /transl_table=11 + /product="NAD-dependent epimerase/dehydratase" + /protein_id="ACL77736.1" + /db_xref="InterPro:IPR001509" + /db_xref="InterPro:IPR005913" + /db_xref="InterPro:IPR013120" + /translation="MDKYIQEDCMEYLEKIDLTPLYNKSVLITGANGLIGTYIIYMLH + LANLLNKGGIKIQAVSRSKPCEALTDIFEQNYRFYSEDLNIMDFDKLKDKADYIIHGA + TYAQPGKFLRNYITTIHLNTVVTEKLLQKAKKDNAAVLFLSSSEIYGEPDSENIPTPE + NYPGFCSPVNVRAVYSESKRMGETLCFAYKHYEGVNAKVARISMTYGPGVKGDDERVL + GQFIRRAMEQKNISMLDDGSKVRTFCYIADCALMLLYIIAYGKDFVYNVGGLDSISIK + KLAEEVCSVTGSTLTINNPEKRQAFEEIKVSPDRVQLDISKVCSEFGIKHFKPLKEGL + FRTIQWNKDKYNLQTK" + gene complement(4013905..4014945) + /locus_tag="Ccel_3449" + CDS complement(4013905..4014945) + /locus_tag="Ccel_3449" + /inference="protein motif:PFAM:PF02780" + /note="PFAM: Transketolase central region; Transketolase + domain protein; + KEGG: rpb:RPB_3807 acetoin dehydrogenase (TPP-dependent) + beta chain" + /codon_start=1 + /transl_table=11 + /product="Transketolase domain protein" + /protein_id="ACL77737.1" + /db_xref="InterPro:IPR005475" + /db_xref="InterPro:IPR005476" + /translation="MPWTTIEVEKQDNFVITDDSEIGRMISYKDALYEALDQSLARDP + RVFIMGEGVDDPGGVFGTTKGLHEKYGRNRVFDTPIAENSLTGIAAGAAMAGLRPIFV + HSRMDFLLLSLDQLVNHAAKWSYMTGGKVKVPLVVRTVSARGWGSGAQHSQCLHGMLM + NAPGLKIAVPATPYDAKGLLISSIIDNNPVLFVEHRWLYKTVGNVPDTLYSIPFGKGA + VRRKGKDITIVAVSYMLVEALKAAEKLQAKNISAEVIDLRTIKPIDEDIIFESLAKTG + RLIVTDTGWKTGGAAAEITALVAEKAVHLLKKPVVRVCCPDIPTPTGDLQEKAFYPDS + ESICDKAVELMK" + gene complement(4014987..4015952) + /locus_tag="Ccel_3450" + CDS complement(4014987..4015952) + /locus_tag="Ccel_3450" + /inference="protein motif:PFAM:PF00676" + /note="PFAM: dehydrogenase E1 component; + KEGG: tpd:Teth39_0790 pyruvate dehydrogenase + (acetyl-transferring)" + /codon_start=1 + /transl_table=11 + /product="dehydrogenase E1 component" + /protein_id="ACL77738.1" + /db_xref="InterPro:IPR001017" + /translation="MENERFIELYRVMQTIRIVERKIEEEYKNDEMKTPIHLSIGQEA + IAAGVCINLRKDDYLFGTHRSHAQYIAKGGDIKQMIAELYLRKTGCTSGRGGSMHLMA + ADRGIFGSTAIVGGSLPLGTGTALASKIQKNDRVTAVFFGDGAADEGTFHESLNFASL + KKLPILYVCENNFYAINSRQAQRQSGDNIYKMAQVYGIPGYQIDGNDVLKVSEYAEKA + IERCRKGEGPTLLECVSYRWKGHIGTVDDLGVGYRSQEEYDYWISKCPIKWYKDYLRV + RNILDDKLEKSINEEIDKLVKDAFEFAVNSPKPQPEELFDFVYAD" + gene complement(4015997..4016821) + /locus_tag="Ccel_3451" + CDS complement(4015997..4016821) + /locus_tag="Ccel_3451" + /inference="similar to AA sequence:KEGG:Gbem_3741" + /note="KEGG: gbm:Gbem_3741 TPR repeat-containing protein" + /codon_start=1 + /transl_table=11 + /product="TPR repeat-containing protein" + /protein_id="ACL77739.1" + /translation="MKQDKFLLIKTIGDGFWYDMHHTLSNLLLAEITERIPVIYWGSR + SMYSTDETSNAFEQFFLPVSKDGMDRLIENINRDADIQVADRYTDIECIMCRMDKTCP + YFGLNSRDIYRRMLKKYIRLRPEVENEINTFYAANMEGKTMLAVHIRGSDKILEVSHL + HELNKLYPTKIKTYLKERPDAYIFLMTDCKDILEEYKSVYDDKLISTDCKRVLKNGGG + VHFQEYCNNKLKGIEIIKDTWLAAKSDYFIGNGFSNVSRAVCELKDWQNQEVTLLF" + gene complement(4016849..4017922) + /locus_tag="Ccel_3452" + CDS complement(4016849..4017922) + /locus_tag="Ccel_3452" + /inference="protein motif:PFAM:PF00483" + /note="PFAM: Nucleotidyl transferase; + KEGG: csc:Csac_2018 mannose-1-phosphate + guanylyltransferase (GDP)" + /codon_start=1 + /transl_table=11 + /product="Nucleotidyl transferase" + /protein_id="ACL77740.1" + /db_xref="InterPro:IPR005835" + /translation="MERFVVIMAGGSGTRLWPLSKEKKPKQFISVDDGECMLVQTIKR + VCKCVPPSNCFIITNESLVELTKEVVKDIIPYSNIIPEPRKKNTAACIAYTTVLLNKK + LGEGVLCFVPADGYVKDQQGYADAINLAFSAAEEKERLVVIGITPSYPSTAYGYIKIT + KDAGLEEHVLKVSKFTEKPNEDAARSMLESGDHLWNGGILVGSSQTIIREIKENIPQH + YIEIANALRYGGADNFNTYIVDAYNKLQEISFDNAVLEKSSDIYVVRASFDWDDIGSI + DTLSETLQKDNDANSWKGDYIAVQTTNSVIYADGILITVIGLDNMIVAGTKEAVIVCP + RGKAQEVKGLVEILKQKGYEIFL" + gene 4018096..4018437 + /locus_tag="Ccel_3453" + CDS 4018096..4018437 + /locus_tag="Ccel_3453" + /inference="similar to AA sequence:KEGG:GTNG_3084" + /note="KEGG: gtn:GTNG_3084 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77741.1" + /translation="MQGKYILLSILNSGLIVFGQTLWKLGLVKTEEYSLRLVLSPLIL + AGVFVYGISTLLWLYILSELPFSTAYPLNSIAYVLSLFVGFFIFKEHIDLQKIFGTML + ILAGVFYMTRG" + gene 4018870..4021314 + /locus_tag="Ccel_3454" + CDS 4018870..4021314 + /locus_tag="Ccel_3454" + /inference="protein motif:TFAM:TIGR00396" + /note="TIGRFAM: leucyl-tRNA synthetase; + KEGG: tex:Teth514_0255 leucyl-tRNA synthetase" + /codon_start=1 + /transl_table=11 + /product="leucyl-tRNA synthetase" + /protein_id="ACL77742.1" + /db_xref="InterPro:IPR002300" + /db_xref="InterPro:IPR002302" + /db_xref="InterPro:IPR013155" + /db_xref="InterPro:IPR015413" + /translation="MPYSADIDRKWQKKWEETGIYRFNPEETDKKLYCLEMFSYPSGA + NLHVGHWYNYGLTDSWARMKRMQGYNVFHPMGFDAFGLPAENYAIKTGIHPQDSTLKN + IETMEGQLKEMGATFDWDYEIKTCMPDYYKWTQWLFLQLYKSGLAYRKNAPVNWCPKC + NTVLANEQVVDGCCERCDTEVTKRDLTQWFFKITAYAQELLDKLDTIDWPEKTKKIQT + NWIGRSEGAEISFKVVDTDIEFQVFTTRADTLYGVTYVVLAPENPIVENITRPEYAEA + VEKYKNDTKKQTEIERLSTTKEKTGVFTGSYAIHPITGEKVPVWIADYVLASYGTGCV + MAVPSHDERDFEFAKKYNLPIKRVIKSADGSNDELPYCEYGVLVNSSEFDGVPSTEAR + TAIIKKLEADGKGSLKINYRLRDWLVSRQRYWGAPIPVVYCEHCGEVAVPEENLPVTL + PYNVEFKPDGESPLKKSEEFMNTVCPKCGATAKRDPDTLDTFVCSSWYHLRYPDNRNN + DKPFDTEWINKLLPVDKYVGGAEHAAMHLLYARFITKALRDLGFLNFDEPFLSLVHQG + TILAPDGSKMSKSRGNTISPDDYVRKYGSDIFRMYLGFGFNYVDGGPWSDDGIKAISR + FASRIERLVESLAEQKSKASRTDIDKDDKELNFVRHTAIKGATQDTDRFQFNTAISRC + MELVNALFKYDAEVKTKNIQLFEDTIKDLVKLVSPFAPHFAEEMWEQLGCEYSLFNQK + WPEFDENALVKDTIELAVQVNGTVRGKIEIAADADNSAAEAAALADEKIKPFLDGKEI + KKVIVVKGRLVNIVAK" + gene 4021455..4022021 + /locus_tag="Ccel_3455" + CDS 4021455..4022021 + /locus_tag="Ccel_3455" + /inference="protein motif:PFAM:PF04647" + /note="PFAM: Accessory gene regulator B; + KEGG: ckl:CKL_3367 AgrB-like protein" + /codon_start=1 + /transl_table=11 + /product="Accessory gene regulator B" + /protein_id="ACL77743.1" + /db_xref="InterPro:IPR006741" + /translation="MNITFYRKLAYKVADSVTRNGQYTETEIKDIRYGLVCIFSDFYK + TLLYLLIFTVFSLTKEFISAFIAFLLLRPFLGGYHFKSELVCIIMSFLTMAIAIFAGK + IIIIPYYIQLLLIIALPIFALLIIPVKDSPKKEYRKRTGILTGLITVLLLLSDYFYMP + DNIITWSVLEVYVLSVYQLLIIKYMHNM" + gene 4022108..4022215 + /locus_tag="Ccel_3456" + CDS 4022108..4022215 + /locus_tag="Ccel_3456" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77744.1" + /translation="MRKNLLSSVGKVSLIVTGLITGAASKILWLYKPEK" + gene 4022357..4023688 + /locus_tag="Ccel_3457" + CDS 4022357..4023688 + /locus_tag="Ccel_3457" + /inference="protein motif:PFAM:PF02518" + /note="PFAM: ATP-binding region ATPase domain protein; + KEGG: ckl:CKL_3318 two-component sensor histidine kinase" + /codon_start=1 + /transl_table=11 + /product="signal transduction histidine kinase regulating + citrate/malate metabolism" + /protein_id="ACL77745.1" + /db_xref="InterPro:IPR003594" + /db_xref="InterPro:IPR005467" + /translation="MHIKFFLLLLTVIEGFIFIMAFYFLSGQRKFIKNNYIRIACFVS + IYTIYTYWITKFLPSGLHSILIASLTCFILNYILNGTLLKSFVKVLIIFLGIAIIESL + IGLACTTIIGKPMSVLIHNNEVLLVLGIIAKLIQSTIVFILYNSHDGFSWLKDGNPYQ + SRYKQTLIMIFAVLFFMIGTNIYISKDPQNLLLYNIFTFVIYIVLIISMLSAFREGSK + LEILQYANELKKENVFQLISFNEMVAKERHEYKNHLNTIYGLCTLNRPDLSEKVKQYI + NNYANNSETKNINVCSGNDFVDAIISVKYNNALKKDIEVLVDFEEPLSSAVIDEDTAV + TVLSNIIDNAYESILGIDREKKYIRLETYIDNDIYYMSISNNGPMIPEAIIKKIFSAG + YSTKENSSKKRGFGLSIVQSQIEKCGGSIHINSNEEITEFLITLIVNNQVS" + gene 4023776..4027009 + /locus_tag="Ccel_3458" + CDS 4023776..4027009 + /locus_tag="Ccel_3458" + /inference="protein motif:PFAM:PF00176" + /note="PFAM: SNF2-related protein; helicase domain + protein; zinc finger SWIM domain protein; SNF2 helicase + associated domain protein; + SMART: DEAD-like helicases; + KEGG: aoe:Clos_1039 non-specific serine/threonine protein + kinase" + /codon_start=1 + /transl_table=11 + /product="SNF2-related protein" + /protein_id="ACL77746.1" + /db_xref="InterPro:IPR000330" + /db_xref="InterPro:IPR001650" + /db_xref="InterPro:IPR007527" + /db_xref="InterPro:IPR013663" + /db_xref="InterPro:IPR014001" + /db_xref="InterPro:IPR014021" + /translation="MFKISKEAIYSLSTPLRYKKGMDYFRDRRVKSLSFNQEMLLFDA + SVLGTRPYNVQAQFAKSGNLTDYSCTCSDFEKNNKCCKHIAAVLFLIKEKDEQGFFNS + SVQKKAAKDIFQFFSDKSSGVKLPVNMEFNLELINRKYSVSKRGPLAALSLRIGRDRL + YIVRNIRQLLECLKNNTEIVFGKGFTFDPSIHDFRENDKSVILYLQEIWQNENLVHYF + TGELSKYSTFIDKDIFLSGAALKRLLQLLHDTQFNVIHNNIKIQNVIIKNQDLPLEFT + LTGNASSIDLNINTNLPLDQITSDSEYFLYGDTIYRVSTAQREYFKPFFNYMQQENVN + RITFIEKDKERFFSEVLPYVEKTGKVYIDENVQEMVQRVNFEPEIYLDKFEDIITADV + KFKYGDRIINPFSAFGDQVSMGKILVRDMEKEGVILDLLGESDFKVNANRIYLDEEEK + IFDFVNTIVPKLQEYTQIFYSESFKSMTMKRLPSFSGFLRLNTLNNFLEFSFDMEGVG + RDELSSIFRNVREKKKYFRLKNGAFLPLDSDGLVTMSELIDQLGLTMDDLDSELVQLP + MYRAFFIDGMLKETGMKFFERNKAFKDLVHDIQEPSETEFQIPETLKGILRNYQKLGF + KWLKTLSTYGLGGILADDMGLGKTLQVITLLQYDKNVSGPATSIVIVPTSLIYNWCSE + VDKFAPDLKITAVVGNKAEREELIRESVNSDVIVTSYALIRRDIEDYKDYIFRYCILD + EAQHIKNPASQAAKAVKQLVSQHRFALTGTPMENNLTELWSVFDFILPGYLRSHGKFV + EKFESPISKGDNSALVSLSKQLKPFILRRLKQDVLKELPEKIEHTIEADLTDEQKKLY + VAYLEKAKGDILKEINENGYERSQIKILSVLTRLRQLCCHPSLFVDNYEGDSGKLLLL + KEIVGDSLTSGHRILLFSQFTSMLAIIRQWLQEDGIDYLYLDGSTPADERMKMVTNFN + NGQGQIFLLSLKSGGTGLNLTGADTVIHYDPWWNPAVEDQATDRAYRIGQLKTVHVMK + LVTHGTIEEKILHLKDRKKQLVDAVIQSGETLITKLTKEELTELFEI" + gene complement(4027067..4028182) + /locus_tag="Ccel_3459" + CDS complement(4027067..4028182) + /locus_tag="Ccel_3459" + /inference="similar to AA sequence:KEGG:Dred_3214" + /note="KEGG: drm:Dred_3214 putative aminopeptidase" + /codon_start=1 + /transl_table=11 + /product="putative aminopeptidase" + /protein_id="ACL77747.1" + /db_xref="InterPro:IPR000787" + /translation="MNDPRIEKLAQNLINYSCELKAGEKILIENIGNEIPLSRALIRE + AYKVGAIPYLTIKNPELERVLLEQCTEEQMKDMARYELERMKDMDAYIGIRSGDNVSE + KASVPSDKMKIYMSLFSKPVHSEQRVEHTKWCVMRYPTHSMAQLANTPTEYFEDFYFK + VCNLDYAKMSKAMDPLVKIMESTDKVRITGKGTDLTFSIKGLPAIKCDGKMNIPDGEV + FTAPIRDSVNGVISYNCPAVYQGVTFENIRLEFKDGKIVDATANDTERINEIFDTDEA + ARYVGEFAIGVNPYIETPMKDTLFDEKIRGSIHFTPGSCYDECPNGNKSSIHWDLVFI + QRPEYGGGEIWFDDKLIRKDGLFVPAELQALNPENLK" + gene complement(4028225..4030030) + /locus_tag="Ccel_3460" + CDS complement(4028225..4030030) + /locus_tag="Ccel_3460" + /inference="protein motif:TFAM:TIGR00181" + /note="TIGRFAM: oligoendopeptidase F; + PFAM: peptidase M3A and M3B thimet/oligopeptidase F; + Oligopeptidase F; + KEGG: cth:Cthe_2452 oligopeptidase F" + /codon_start=1 + /transl_table=11 + /product="oligoendopeptidase F" + /protein_id="ACL77748.1" + /db_xref="InterPro:IPR001567" + /db_xref="InterPro:IPR004438" + /db_xref="InterPro:IPR013647" + /translation="MTSGKTLPKRKDIEERFKWKLEDIYKDTDSWEKDFKQVKELAAQ + MVNFKGKLGNSADTLLDCFKKSDELLSLNDKVFVYARMKRDEDNGNSTYQALTERAST + LATEVYAAISFVVPEMLTIPEDKLMSFLNSNKELSVYMFMVQENLRQKEHILTEKEEQ + ILALSTEISDTAGDIFTMYNNADIKFPHIRDEEGEEIEVTKGRYTTLMESRDRRVRKD + AFEALYSTYSKMKNTLGASLTGNVKKNRFYSVVRNYPSALAASLDNDNVPVEVYDNLI + ETVNKNLHLLNRYLKLRKKVLKLDALHMYDLYVPMVEEYDKKVTYEEAKKIVQEGLQP + LGEEYIGYLKKGLNSGWIDIYENEGKTSGAYAWGTYKTHPYVLLNYQDNINDVYTLTH + EMGHALHSYYTNMTQPYVYSEYRIFVAEVASTVNESLLMRYMLSKSESKQEKAYLLNH + YLEEFRGTVFRQTMFAEFEKLIHQKTEQGEALNAQELCDIYYDLNKKYFGETVDVDEE + IAMEWSRIPHFYSSFYVYKYATGFSAATAIAEKIYKEGKPAVDKYLEFLKGGGSNYPL + ELLKIAGVDLSSPKPIEDALNVFEKTLEELEELLV" + gene 4030260..4030336 + /locus_tag="Ccel_R0085" + /note="tRNA-Arg2" + tRNA 4030260..4030336 + /locus_tag="Ccel_R0085" + /product="tRNA-Arg" + gene 4030664..4031824 + /locus_tag="Ccel_3461" + CDS 4030664..4031824 + /locus_tag="Ccel_3461" + /inference="ab initio prediction:Prodigal:1.4" + /note="KEGG: fta:FTA_1106 D-alanyl-D-alanine + carboxypeptidase/D-alanyl-D-alanine-endopeptidase" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77749.1" + /translation="MTKRKLKLIAVVICIFSCMISSVSAAYIPDNAATLQKMTNGGNQ + YIYSDNPEMLWDGTTTNPGSWVNNFSGRSGAYTIEQALTSNTLYDAYFYHINKTQSKT + IKVGVYLYTTTGTATATIYNKKVVSKDNSTLTDDAMCAGVETGYQQSTNYQTLNITTD + GTFIAYDTISPLMLINGHVMFKTTSSNMKCRIVFLDSTSTVNPKTLGKAIAMSTGVTG + LFPCDVKYVSYNYSNVSSSGKHGFYLALSGSAMGKNSGEYDIGSNLININNDQLQGNY + GIVYNMVLSGCAGKTIRITADWDTIWNSSSGTWCVCETFAYCPGGSTSSWTSQRTHSI + YNKRDPQTNIKTKYTGSEPTFIDVPVPAGNNSYNFKFILPGSNFGNVYFEII" + gene complement(4031921..4032151) + /locus_tag="Ccel_3462" + CDS complement(4031921..4032151) + /locus_tag="Ccel_3462" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77750.1" + /translation="MSIYRNTEKKVLKLYKMAVIGKEKPIPLIVIDSFWKGNYNYFVD + KTKKQIVMAKKTYVRTFRNLNKSYGEHKLNKK" + gene 4032256..4034331 + /locus_tag="Ccel_3463" + CDS 4032256..4034331 + /locus_tag="Ccel_3463" + /inference="protein motif:PFAM:PF06452" + /note="PFAM: Ig domain protein group 2 domain protein; + Carbohydrate-binding family 9; + KEGG: cth:Cthe_0912 glycoside hydrolase family protein" + /codon_start=1 + /transl_table=11 + /product="Carbohydrate-binding family 9" + /protein_id="ACL77751.1" + /db_xref="InterPro:IPR003343" + /db_xref="InterPro:IPR010502" + /translation="MGKEKKKPLKHFIIVLAVFSMVFTNFIGSWSGVSAAPAKGKPSF + KQAASKELKVGQTYTFDIINKQTGATYQWSSSNKSIATVTQKGQVKAISVGTATISCK + ITKNKKSTTIKAKVIVKKEKAPAKPAPQPAKVSVDKNGFDSKGRMVAYFGSPVIDGKV + DAAWSKAQVVTPKYVTDNIGTTATFRTLWDDNAIYILAEVKDKNMSVESDTPYMQDSL + EIFLDENNDKTQEYGIDDLHFRVNYKNSQSVDVGNAERFYTSTKKVKGGYLVEARVAL + NAKPSDGKVLGIELQINEAKDTERIGTINIFDSTGSAWNDTNKFGEVLLTGKAKGAVS + GLNPYDLIKLVESTQKIDFTLYKNPNVVKDAVKSAQKVIANKKATQKQIDAQYSAIKA + AIGTLVLTDEAANEKYFKAVPDNYRTENDKQGTIVSLEYSADNLKNGTDVKKMNVYLP + YGYDASDKNKKYNVLYLMHGGGENENLIFGGPAQNKELKKIIDNMISNGDIEPLIVVT + PTFYGGKDDTALFHEELMKNVVPLVETKYNTYTKSASLEDLKASREHRAFGGFSMGSV + TTWYTYINCLDYFKYFIPISGDCWVFGQKAGSEKSKETAEYLAKVAKDSGYSPQDYYL + FCATGSLDIAYPNLKPQVDAMKQLKDTFIYSSDTTKGNFYFIVSDGGTHAWNWVNQYI + YDILPDLFK" + gene 4034509..4035552 + /locus_tag="Ccel_3464" + CDS 4034509..4035552 + /locus_tag="Ccel_3464" + /inference="protein motif:PFAM:PF00532" + /note="PFAM: periplasmic binding protein/LacI + transcriptional regulator; + SMART: regulatory protein LacI; + KEGG: cac:CAC3553 LacI family transcription regulator" + /codon_start=1 + /transl_table=11 + /product="transcriptional regulator, LacI family" + /protein_id="ACL77752.1" + /db_xref="InterPro:IPR000843" + /db_xref="InterPro:IPR001761" + /translation="MANVNIKIIAQKTNLSPGTVSIVLNGRGDKMRISEKTQNRVWEE + AKLLGYKPNIYARRLRNQSAGNSAAIIGILWPSVYSSELIVSFFDGIQNSILNDKLNV + EVVFKPYQYSEISKMEDVFKNQLFNGVIIVGASDRDVDYMYTIKSAMPIILFNRQNDK + YGSVCIDNYDTGKKVAGLLAARKHKKVGLISPNLLSRNFSMRRTGFLDGCQKYGISVL + PEHIIQETIDSEGGYRSAEKLLRSESLPTALFLLVSGYSHGVYSVFQKNGVRIPEDIE + IIGCSDIVSSRILKPSMTVIDLPVQKMVKKSLLLILDMINGYIQDPHIIFEEAPFIFR + ESCGGFPDSGSVI" + gene complement(4035778..4036203) + /locus_tag="Ccel_3465" + CDS complement(4035778..4036203) + /locus_tag="Ccel_3465" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77753.1" + /translation="MNKRILSFLLIITLILTCFTNLAYSAANTKVKVTLKSVVCIKND + HVGNEWGFGATVNKKTIYEGETIEISTTPKGKITIVSMAEEDDSYPDYGSKTLAVSVS + KLKANKSTNYTSNVTVIENRGRYSGNSAVWKFTYVIKKK" + gene 4036363..4036614 + /locus_tag="Ccel_3466" + CDS 4036363..4036614 + /locus_tag="Ccel_3466" + /inference="protein motif:PFAM:PF03698" + /note="PFAM: protein of unknown function UPF0180; + KEGG: cth:Cthe_0096 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0180" + /protein_id="ACL77754.1" + /db_xref="InterPro:IPR005370" + /translation="MNQKIAIEPNLTPIKEYLAQKGYSVENIDYGQGATKNNYDAIIV + SGVETNIMGIEDTSSKAIVIDADGMTAEQVYQELQSQLH" + gene complement(4036673..4037362) + /locus_tag="Ccel_3467" + CDS complement(4036673..4037362) + /locus_tag="Ccel_3467" + /inference="protein motif:TFAM:TIGR00760" + /note="TIGRFAM: L-ribulose-5-phosphate 4-epimerase; + PFAM: class II aldolase/adducin family protein; + KEGG: cbt:CLH_3015 L-ribulose-5-phosphate 4-epimerase" + /codon_start=1 + /transl_table=11 + /product="L-ribulose-5-phosphate 4-epimerase" + /protein_id="ACL77755.1" + /db_xref="InterPro:IPR001303" + /db_xref="InterPro:IPR004661" + /translation="MLEQLKQAVLEANLELPEKGLVTYTWGNVSGIDRESRLIAIKPS + GVEYNVMTADDIVLIDLTGKVVEGKLKPSSDAPTHVALYNAFPDIGGVTHTHSRWATA + FAQAGMGIPAYGTTHADYFYGEIPCTREMTKDEIESDYEANTGTVIIETFKDLNPNYI + PAVLVKNHAPFTWGKSAAESVHNSVVLEEVAMMAIQCRQLNPNVTPMPQVLLDKHFMR + KHGPKAYYGQK" + gene complement(4037404..4039011) + /locus_tag="Ccel_3468" + CDS complement(4037404..4039011) + /locus_tag="Ccel_3468" + /inference="protein motif:PFAM:PF00370" + /note="PFAM: carbohydrate kinase FGGY; + KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY" + /codon_start=1 + /transl_table=11 + /product="carbohydrate kinase FGGY" + /protein_id="ACL77756.1" + /db_xref="InterPro:IPR000577" + /translation="MKHELNDGRNAILNGKTAIGIELGSTRIKTVLIGADNAPIASGS + HDWENSYINNIWTYSLEDIWKGVQSSYQEMVKDVRDKFGVSLKTTGAIGFSGMMHGYM + VFDKEGNLLTHFRTWRNTITAQASEELTKLFNYPIPQRWSIAHLYQAILNNEEHVSNI + DFMTTLAGFIHWKLTGEKVLGVGEASGVFPIDLDTKDFNSSMINQFNEATTNRNFSWK + LQNILPKVLVSGTEAGRLTEEGAKLLDVTGELQAGIPFCPPEGDAGTGMVATNSVAVR + TGNVSAGTSVFAMVVLEKELSKVYSEIDLVTTPDANLVAMVHSNNCTSDYDAWMGIFA + EAVKTLGFDVKKPQLYDTLLGAALQGDPDCGGLLAYGYISGEHITHFEEGRPMVVRSS + NSKFNLANFIRVNLFTSLGALKTGLDILFQKEAVKVDGITGHGGFFKTKEVGQKIMAA + AFNVPVSVMKTAGEGGAWGIALLASYMINRESSQSLEDFLKQNVFGESQGETVQPDSK + DVDGFNEFMKRYTKGLGIERAAINFLN" + gene complement(4039098..4040579) + /locus_tag="Ccel_3469" + CDS complement(4039098..4040579) + /locus_tag="Ccel_3469" + /inference="similar to AA sequence:KEGG:Csac_0877" + /note="KEGG: csc:Csac_0877 L-fucose isomerase-like + protein" + /codon_start=1 + /transl_table=11 + /product="L-fucose isomerase-like protein" + /protein_id="ACL77757.1" + /translation="MYNVPKVKLGIVAVSRDCFPAELSTERRKAVVKACAEKGVEIVQ + ADTVVENEVDIPNALKELKDADANALVVYLGNFGPEGPETMLAQKFDGPVMFVAAAEE + SEGNLKGGRGDAYCGMLNASYNLALRKLNPYIPEYPVGDPQDVADMIGDFENIARILI + GVSKLKIFSFGPRPFNFVACNAPIKPLYDLGVEIMENSELDLFEAYNNHKDDPRIPAV + VKEMEEELKDGNGYPGILPKLAQYEITLLDWAEQNKGTSEYFVFANKCWPAFQTQFGF + VPCYVNSRLAAKGIPVACETDIYGALSEYIITCATQLPATLLDINNSVPKDMFENNKE + LFNGYTLTDLFMGFHCGNTPSCMMKNHTMKYQLIMHRLLEPGKEPDISRGTLEGTIRP + GDITFFRLQGTADCQLRSYVAEGEIIDVDPKSFGGIGVFAIKEMGRFYRHVLIAKRYP + HHGGVAFKHMGKVLFATMKLLGVEDVAFNQPASILYKDENPFK" + gene complement(4040669..4041763) + /locus_tag="Ccel_3470" + CDS complement(4040669..4041763) + /locus_tag="Ccel_3470" + /inference="protein motif:PFAM:PF00392" + /note="PFAM: regulatory protein GntR HTH; periplasmic + binding protein/LacI transcriptional regulator; + KEGG: bld:BLi03256 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="regulatory protein GntR HTH" + /protein_id="ACL77758.1" + /db_xref="InterPro:IPR000524" + /db_xref="InterPro:IPR001761" + /translation="MQKSDNQVKYLKLMEHLKQEILLGRIKPGEQIPSENVLAETMSL + SRHTVRKAISLLVNEGYLYTEHGRGTFCLDRSRKRNDSRNIGVITTYISEYIFPKVIQ + GIDSVLSSNGYSIMLKNTNNNTNKEAVCLEDVLQKNVEGLIIEPTKSALYSENMEFYE + ALDNHRIPYIFIHGFYQQLENKSHIILDDAKGMYSAVEYLTKLGHKKIVGIFKADDVQ + GVERHNGYAKAIADAGMSYNPDDVIWFHTEDRVVKPYNMVKRFLEENREVDAIACYND + QIAFRVYELLTGLGVKVPEDISLVGFDDSYFSANCPVKITTVRHPKEKLGEEAAEILL + EMIKDNDYLKNPVQKVVIPELIIKESCIKR" + gene complement(4041888..4042022) + /locus_tag="Ccel_3471" + CDS complement(4041888..4042022) + /locus_tag="Ccel_3471" + /inference="ab initio prediction:Prodigal:1.4" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /protein_id="ACL77759.1" + /translation="MKLDEFLDYQRKLWEMDKRKYETYKMPQNNCDKKANKNTKPAKK + " + gene complement(4042298..4042699) + /locus_tag="Ccel_3472" + CDS complement(4042298..4042699) + /locus_tag="Ccel_3472" + /inference="protein motif:PFAM:PF01894" + /note="PFAM: protein of unknown function UPF0047; + KEGG: cac:CAC0907 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function UPF0047" + /protein_id="ACL77760.1" + /db_xref="InterPro:IPR001602" + /translation="MLYQFSLSTERQNFYNITSKVAESISQCGITDGAVIVFCPHTTA + GITINENADPDVVRDMLYGLDKAYPDRTEFRHYEGNSSAHLKASAVGSSQYIIFEEGK + LLLGTWQGIYFCEFDGPRNRKFYVKIIKSGL" + gene complement(4042699..4043379) + /locus_tag="Ccel_3473" + CDS complement(4042699..4043379) + /locus_tag="Ccel_3473" + /inference="protein motif:PFAM:PF03749" + /note="PFAM: sugar fermentation stimulation protein; + KEGG: cbe:Cbei_0495 sugar fermentation stimulation protein + A" + /codon_start=1 + /transl_table=11 + /product="sugar fermentation stimulation protein" + /protein_id="ACL77761.1" + /db_xref="InterPro:IPR005224" + /translation="MKYKNIKRGIFIERPNRFIAHVEIDSVTEICHVKNTGRCKELLI + PGTVVYIQKSDNPKRKTGFDLISVIKGSRHINMDSQAPNKLVQEWMEKGNLFSGITLV + KAESRYKNSRFDFYVETKEDKIFIEVKGVTLEENNIAMFPDAPTERGVRHIKELCDSL + HDGYKAYIIFVIQMKDVDYFIPNETTHREFSDALKSAYRKGVNILALDCVVEEGFIEI + EKQVEVRL" + gene 4043542..4043922 + /locus_tag="Ccel_3474" + CDS 4043542..4043922 + /locus_tag="Ccel_3474" + /inference="protein motif:TFAM:TIGR00320" + /note="TIGRFAM: desulfoferrodoxin; + PFAM: Desulfoferrodoxin ferrous iron-binding region; + Desulfoferrodoxin Dfx domain protein; + KEGG: dps:DP1668 desulfoferrodoxin" + /codon_start=1 + /transl_table=11 + /product="desulfoferrodoxin" + /protein_id="ACL77762.1" + /db_xref="InterPro:IPR002742" + /db_xref="InterPro:IPR004462" + /db_xref="InterPro:IPR004793" + /translation="MKTEVAFYRCGQCGNIVSIIKNGGGKLVCCGEQMERLEPNTTDA + ALEKHVPVAERKDGQIVVQIGSAIHPMIDVHYIEWIEVAGDEGTERIVLSPGDEPKAV + FADKSNAEVYAYCNLHGLWMSHVK" + gene 4044229..4044474 + /locus_tag="Ccel_3475" + CDS 4044229..4044474 + /locus_tag="Ccel_3475" + /inference="similar to AA sequence:KEGG:Cthe_2436" + /note="KEGG: cth:Cthe_2436 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="conserved hypothetical protein" + /protein_id="ACL77763.1" + /translation="MKLQNNVINAENLNENNTLSVVQDKLKPGETIILDVGYNYFHQA + DKLYEMLINEGYYVRKTFVNGRNQLLVAQKDEKHHMY" + gene complement(4044540..4045442) + /locus_tag="Ccel_3476" + CDS complement(4044540..4045442) + /locus_tag="Ccel_3476" + /inference="protein motif:PFAM:PF00781" + /note="PFAM: diacylglycerol kinase catalytic region; + KEGG: cth:Cthe_3168 putative lipid kinase" + /codon_start=1 + /transl_table=11 + /product="diacylglycerol kinase catalytic region" + /protein_id="ACL77764.1" + /db_xref="InterPro:IPR001206" + /db_xref="InterPro:IPR005218" + /translation="MKNALFVYNPVSGGHRIPSELDFILSSFQEKGILAQPYRLTDAN + SDYLINALQSGVYDFVAASGGDGTINFVANLLLNNDIKMPLGVIPSGTCNDFAKCLGI + NSLKESIDIILQGETIMCDVGYINNSQYFLSTFAGGNFVDVSFNTNSELKKNFGPFAY + YLKGISEVANIKSFDLKITADEHIIEGKFLLFLIVNGKQAAGFPNLLKQADYTDGYMD + IILVKKCSNINLASIFFKVLSKESVNDKNVIILKARKCELSSKMPLALTVDGERSELF + PASIEFKQRILEVFVPIEEINNIS" + gene complement(4045641..4045811) + /locus_tag="Ccel_3477" + CDS complement(4045641..4045811) + /locus_tag="Ccel_3477" + /inference="similar to AA sequence:KEGG:Cthe_2349" + /note="KEGG: cth:Cthe_2349 small, acid-soluble spore + proteins, alpha/be" + /codon_start=1 + /transl_table=11 + /product="small, acid-soluble spore protein" + /protein_id="ACL77765.1" + /db_xref="InterPro:IPR001448" + /translation="MSRRKSVMSDALKEEIARELGVYNTVANEGWGAVSSRDCGNIVK + KAIEMAERSVKQ" + gene complement(4046259..4047095) + /locus_tag="Ccel_3478" + CDS complement(4046259..4047095) + /locus_tag="Ccel_3478" + /inference="protein motif:TFAM:TIGR00078" + /note="TIGRFAM: nicotinate-nucleotide pyrophosphorylase; + PFAM: Quinolinate phosphoribosyl transferase; + KEGG: cth:Cthe_2354 nicotinate-nucleotide + pyrophosphorylase [carboxylating]" + /codon_start=1 + /transl_table=11 + /product="nicotinate-nucleotide pyrophosphorylase" + /protein_id="ACL77766.1" + /db_xref="InterPro:IPR002638" + /db_xref="InterPro:IPR004393" + /translation="MKLSNLYIHEIVMNALKEDMPLGDITTDNILSEGDSSRAEFMAK + QDAVIAGLDVAKYVFEVLDSGICFKAFVKDGDKVSKGDIIAEVSGSTRALLKGERTAL + NFMQRLSAIATMTNRYVSKVQGLPVKVTDTRKTTPGLRLLEKYAVSAGGGANHRFSLS + DGVLIKDNHIAAAGGITNAVQRVRNSIPHTVKIEVEVESMEEVREALECKADIIMLDN + MSNEQMAEAVKLINKRALAEASGNISEETIYNVALTGVDIISIGKLTHSANSIDISMN + IE" + gene complement(4047107..4048711) + /locus_tag="Ccel_3479" + CDS complement(4047107..4048711) + /locus_tag="Ccel_3479" + /inference="protein motif:TFAM:TIGR00551" + /note="TIGRFAM: L-aspartate oxidase; + PFAM: fumarate reductase/succinate dehydrogenase + flavoprotein domain protein; + KEGG: cth:Cthe_2355 L-aspartate oxidase" + /codon_start=1 + /transl_table=11 + /product="L-aspartate oxidase" + /protein_id="ACL77767.1" + /db_xref="InterPro:IPR000875" + /db_xref="InterPro:IPR003953" + /db_xref="InterPro:IPR004112" + /db_xref="InterPro:IPR005288" + /translation="MEEDSNKVDVEVIHKDVVIIGSGIAGVYTALEIPDSFQIGIITK + ETLDISNSVLAQGGIAVSLDEKNDSPQLHFKDTLFAGAGLNDQKSVWVLVEEAAENIR + ILCSLGVNFDKSGQHLSLTREGAHSVNRIIHSGDTTGKEVCDKLIEVARRKKNISIFE + SHFAVDLVIEEGKCKGVIVYDEIEDKIKIFKSGSVVVATGGFGQIYAHTTNPEVATGD + GVGMCLRAGAQAMDMEFIQFHPTVLYHPKDKSFLISEAVRGEGAQLKNSNGEPFMKKY + HELGELAPRDIVSRAIFKEMYLTDSKNVFLDITFKGREYIESRFPNIFKTCLDYGIDI + SKDFIPVAPAEHYCMGGVKTDVDGQTNIPGLYACGEVACTGIHGANRLASNSLLEGLV + FGRKIAKKIESEGRPCNNSAVNSRLCYVSNKENDAALKSMKEEIQAAMTKYVGIIRSQ + QGLEKAAQIIKDIYKKYTDFTGFSLVKLEVLNMLTVAGLVIESALERKESRGAHYRTD + YDKTDDTNWRKNIVKELEKGKMASPF" + gene complement(4048820..4049734) + /locus_tag="Ccel_3480" + CDS complement(4048820..4049734) + /locus_tag="Ccel_3480" + /inference="protein motif:TFAM:TIGR00550" + /note="TIGRFAM: quinolinate synthetase complex, A subunit; + PFAM: Quinolinate synthetase A; + KEGG: cth:Cthe_2356 quinolinate synthetase A" + /codon_start=1 + /transl_table=11 + /product="quinolinate synthetase complex, A subunit" + /protein_id="ACL77768.1" + /db_xref="InterPro:IPR003473" + /translation="MDKDLLISNIKKMKKEQNAVIVAHSYQVDEVQEIADVTGDSLAL + SQFCASSQADTIVFCGVHFMAESAKLLSPEKTVLLPEINAGCPMADMVTAEALKEAKK + KYPHAAVVCYINSSAEVKAECDICCTSSNAEKVIRSIDKKDIIFAPDKNLGSYVAKKV + PEKNIIFWEGYCITHHKIKKDAVIESKRLHPDAILLVHPECRPEIQELADFVGSTKQI + IDYARNSEHDKFIIGTEMGVLYQLKKENPNKTFYMMSTGLICPNMKKTSLQSVHDALA + KRQYEITLDSGIIERASGSLNRMLAVGK" + gene complement(4050214..4051348) + /locus_tag="Ccel_3481" + /pseudo + gene complement(4051691..4051806) + /locus_tag="Ccel_R0086" + rRNA complement(4051691..4051806) + /locus_tag="Ccel_R0086" + /product="5S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(4052057..4055141) + /locus_tag="Ccel_R0087" + rRNA complement(4052057..4055141) + /locus_tag="Ccel_R0087" + /product="23S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(4055819..4057459) + /locus_tag="Ccel_R0088" + rRNA complement(4055819..4057459) + /locus_tag="Ccel_R0088" + /product="16S ribosomal RNA" + /note="RNAmmer 1.2, Lagesen et al., Nucleic Acids Res. + Apr2 2, 2007" + gene complement(4058002..4060524) + /locus_tag="Ccel_3482" + CDS complement(4058002..4060524) + /locus_tag="Ccel_3482" + /inference="protein motif:TFAM:TIGR01063" + /note="TIGRFAM: DNA gyrase, A subunit; + PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase + repeat beta-propeller; + KEGG: cth:Cthe_2361 DNA gyrase subunit A" + /codon_start=1 + /transl_table=11 + /product="DNA gyrase, A subunit" + /protein_id="ACL77769.1" + /db_xref="InterPro:IPR001360" + /db_xref="InterPro:IPR002205" + /db_xref="InterPro:IPR005743" + /db_xref="InterPro:IPR006691" + /translation="MADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLK + PVHRRILYTMFTSGFTPEKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRH + PLVDGHGNFGSRDGDSAAAMRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVV + LPSRFPNLLVNGSSGIAVGMATNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPD + FPTAAKIIGKRGIREAFKTGRGKLVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVE + KIAQLVKDKRIDGISFIQDESGREEPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSV + NMVAIVPTEDKMYEPRVLNLRQIIDYYIAHQEDVIRRRTKFELDKAEARAHILEGLKK + ALDHLDEVIKTIRNSKTEAIAKENLSERFGFSDKQAQAIVDMRLGRLTGLEREKLETE + YNELLEKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQ + EEESVITMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFF + TNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYKEGLYLIMATK + NGLVKKTDLMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRET + DARPIGRVSQGVKGIELDEGDFVIGMEVCTDNTTLLVVTENGFGKRTELDEYKVQTRG + GKGVLTYRITEKTGKSIGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLM + RMSEGNNVVSVARMVNEESEENEEMEENEEMEENEESENTEL" + gene complement(4060761..4061606) + /locus_tag="Ccel_3483" + CDS complement(4060761..4061606) + /locus_tag="Ccel_3483" + /inference="protein motif:TFAM:TIGR00180" + /note="TIGRFAM: parB-like partition protein; + PFAM: ParB domain protein nuclease; + KEGG: cth:Cthe_2362 ParB family protein" + /codon_start=1 + /transl_table=11 + /product="parB-like partition protein" + /protein_id="ACL77770.1" + /db_xref="InterPro:IPR003115" + /db_xref="InterPro:IPR004437" + /translation="MLESKIQFTKQEKKEDQKNITYVGIDHIRPNPYQPRKQFNKMAL + EELCESIKQYGVLQPINVRRLSHGTYEIVAGERRLRAATMAGLMEIPAIIINVDDNDS + AVMALIENLQREDLSYMEEAEGYSNLINEHGFTQEELAQKIGKSQSTVANKIRLLKLS + PLVKKILSDNSLTERHARALLKLHDEQLQLKVLRLVCERGLNVKKTEELVERAIDKYS + KSIKQRASEKKMTKAIKDVRIFVNTIKQAIDIMRQSGVNAKAAQIDRGEYIEFVVRVP + KNNMA" + gene complement(4061766..4062491) + /locus_tag="Ccel_3484" + CDS complement(4061766..4062491) + /locus_tag="Ccel_3484" + /inference="protein motif:TFAM:TIGR00138" + /note="TIGRFAM: methyltransferase GidB; + PFAM: glucose inhibited division protein; + KEGG: cth:Cthe_2363 methyltransferase GidB" + /codon_start=1 + /transl_table=11 + /product="methyltransferase GidB" + /protein_id="ACL77771.1" + /db_xref="InterPro:IPR003682" + /translation="MVLDNELKQLLIDGMTYYKKEITDIQIKQFEKYMELLKEWNKKI + NLTAIEDDREIVIKHFIDSISIVPYVKNENLKIIDIGTGAGFPGIPLKIVNPQNKVTL + LDSLDKRVKFLNEVINGINITQISAIHGRAEDFGTNPVYREKYDIAVARAVANLPVLL + EYCLPFVKINGIFIAMKGSNTEEFENCNKALDILGGKIEKIEKMELPFTNIERNVVVV + RKFRQTPTKYPRKAGKPSKEPLI" + gene complement(4062507..4064390) + /locus_tag="Ccel_3485" + CDS complement(4062507..4064390) + /locus_tag="Ccel_3485" + /inference="protein motif:TFAM:TIGR00136" + /note="TIGRFAM: glucose inhibited division protein A; + PFAM: glucose-inhibited division protein A; + KEGG: cth:Cthe_2364 tRNA uridine + 5-carboxymethylaminomethyl modification enzyme GidA" + /codon_start=1 + /transl_table=11 + /product="glucose inhibited division protein A" + /protein_id="ACL77772.1" + /db_xref="InterPro:IPR002218" + /db_xref="InterPro:IPR004416" + /db_xref="InterPro:IPR013027" + /translation="MDYFAGNYDIVVVGGGHAGCEAALAAARLGCSTIIFSINLDSIA + NMPCNPSIGGTAKGHLVREIDALGGQMGKATDKTFIQSKILNSSKGPAVYSLRAQVDR + RQYQMEMKNILEKQENLDIRQSEVVEILTDENKTKVTGVKTHTGAIFHCKAVVLTTGT + YLKGRIFIGDVNYSGGPDGLFPANKLSESLQNLGLNLIRFKTGTPARLNRQSLNFSKM + SEQPGDDVIVPFSFETEKIDKEQVSCWLTYTNQETHEVIKRNIHKSPLYSGNITGVGP + RYCPSIEDKVVRFSDKEHHQVFVEPMGLETEEMYLQGMSSSLPEDVQIEFMRTIPGLE + NVKVMRSAYAIEYDGIDATQLKLSLEYKDVAGLFSAGQINGSSGYEEAAAQGIVAGIN + AVMKIKNREPLVFDRSQAYIGVLIDDLVTKGTKEPYRMMTSRAEYRLLLRQDNADLRL + TPIGREIGLISEERYKRFLEKKEMIEKEIERLKKTYLPPSEKVQSYLENRNSTAIKSG + IQVTELLRRPEISYESLSEICELPDLPRAVREQVEVAVKYEGYIKRQMQQVEQYKKLE + GRKLPHDIDYNEIQGLRLEARQKLSQIKPDSIGQASRITGVSPADISVLLIYLEQVKR + KRD" + gene complement(4064426..4065808) + /locus_tag="Ccel_3486" + CDS complement(4064426..4065808) + /locus_tag="Ccel_3486" + /inference="protein motif:TFAM:TIGR00450" + /note="TIGRFAM: tRNA modification GTPase TrmE; small + GTP-binding protein; + PFAM: GTP-binding protein HSR1-related; Miro domain + protein; + KEGG: cth:Cthe_2365 tRNA modification GTPase TrmE" + /codon_start=1 + /transl_table=11 + /product="tRNA modification GTPase TrmE" + /protein_id="ACL77773.1" + /db_xref="InterPro:IPR002917" + /db_xref="InterPro:IPR004520" + /db_xref="InterPro:IPR005225" + /db_xref="InterPro:IPR006073" + /db_xref="InterPro:IPR013684" + /translation="MYIEDTIAALSTPYGTGGIGVIRISGGQAFDTANKIFRSSKTIE + EIHSHTVTYGKIVDPKLNDVVDEVLLLKMCKPNTFTREDVIEIHCHGGIVVVNRVLEL + IFKNGVRPAQPGEFTKRAFLNGRIDLSQAEAIIDLINSKTVESSKAAVSHLEGRLSLR + LKSIREVLVGLLAHIEVTVDYPEHDIEEITGENVLENLIKIKEELITLAGTFERGKIL + REGIDIVIAGKPNVGKSSLLNQLSGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDT + AGIRSTEDVVETIGVNRAYEAIESADLIIAVLSADTGVTEEDIQILKMIKNKKSLILI + NKTDLVEKNSISKIKQQLSECDIVLEASVIKDVGIEELETAISGLFIKGDISSNNEVL + LTNARHKYLVDRAINDIEQALNSFETGMPLDMVTIDIKSCADSIGEITGESIDEAVLH + NIFSRFCIGK" + gene complement(4065943..4066575) + /locus_tag="Ccel_3487" + CDS complement(4065943..4066575) + /locus_tag="Ccel_3487" + /inference="protein motif:PFAM:PF01424" + /note="PFAM: single-stranded nucleic acid binding R3H + domain protein; + KEGG: cth:Cthe_2366 single-stranded nucleic acid binding + R3H" + /codon_start=1 + /transl_table=11 + /product="single-stranded nucleic acid binding R3H domain + protein" + /protein_id="ACL77774.1" + /db_xref="InterPro:IPR001374" + /db_xref="InterPro:IPR004088" + /translation="MAYSIEKKGKTVQEAISAALEELQLTQDDVEVEVIEEGNKGIFG + IIGSKVAKIRVTVIEKEEKNRCDIASDFLYTILNNMGVEADINVSEDEESIVVDINGD + NIGIIIGRRGETMDSLQYLTSLVINKEYEDYKRVILNVENYRQKREETLIKLANRLAD + KVVKYRKPITLEPMNPYERRIIHSSLQGHKYVETYSTGEEPKRKVVITMK" + gene complement(4066575..4067420) + /locus_tag="Ccel_3488" + CDS complement(4066575..4067420) + /locus_tag="Ccel_3488" + /inference="protein motif:PFAM:PF02096" + /note="PFAM: 60 kDa inner membrane insertion protein; + KEGG: ckl:CKL_3476 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="60 kDa inner membrane insertion protein" + /protein_id="ACL77775.1" + /db_xref="InterPro:IPR001708" + /translation="MFDILIRPLGQFLYWIYKTIAFENYGLALIIFTIIVRSIMVPLT + LRQYKSSAEMQKVQPLLQEIQRKYANDKAKLNEEMMKLYQEHKINPAGGCLPLLIQMP + ILLALWQAITKPLKYMLGFTATQLNNLAVESKIPINSAYSEINTITHFMSRGEGEKVG + NLNMFFPSHGFGINLGDIPTWHFNEIVNNPKNAVLLLLPLIATLTTYLTVRMSMPKSK + TTDKAANPMGNSMMYISPIMTLIFSFQFPAGLALYWIAGNVFAIAQQYYVNKYVLNKK + EEVSK" + gene complement(4067450..4067665) + /locus_tag="Ccel_3489" + CDS complement(4067450..4067665) + /locus_tag="Ccel_3489" + /inference="protein motif:PFAM:PF01809" + /note="PFAM: protein of unknown function DUF37; + KEGG: cth:Cthe_2368 hypothetical protein" + /codon_start=1 + /transl_table=11 + /product="protein of unknown function DUF37" + /protein_id="ACL77776.1" + /db_xref="InterPro:IPR002696" + /translation="MLKRILISIIRFYQRFISPIKVRPTCRFYPTCSQYAIEAVTKYG + CVKGTFLALKRILKCHPFHPGGFDPIK" + gene complement(4067647..4068012) + /locus_tag="Ccel_3490" + CDS complement(4067647..4068012) + /locus_tag="Ccel_3490" + /inference="protein motif:TFAM:TIGR00188" + /note="TIGRFAM: ribonuclease P protein component; + PFAM: ribonuclease P protein; + KEGG: cth:Cthe_2369 ribonuclease P protein component" + /codon_start=1 + /transl_table=11 + /product="ribonuclease P protein component" + /protein_id="ACL77777.1" + /db_xref="InterPro:IPR000100" + /translation="MKKTVTLKKNYEFARVFNKGSFYVGRNITVYILPNKQSLNRIGI + SVSKKAGKAVVRNRKKRLIRESYRYFEEYISNGYDIVIAARAGESVPTYGVVLKEFKY + LLKKLQIFDREKYNCLKEY" + gene complement(4068088..4068222) + /locus_tag="Ccel_3491" + CDS complement(4068088..4068222) + /locus_tag="Ccel_3491" + /inference="protein motif:PFAM:PF00468" + /note="PFAM: ribosomal protein L34; + KEGG: cth:Cthe_2370 50S ribosomal protein L34P" + /codon_start=1 + /transl_table=11 + /product="ribosomal protein L34" + /protein_id="ACL77778.1" + /db_xref="InterPro:IPR000271" + /translation="MLRTYQPKKRHAKKEHGFRKRMSTSNGRKVLRRRRLKGRKVLSA + " +ORIGIN +// + diff --git a/docs/notebooks/pCC1BAC.gb b/docs/notebooks/pCC1BAC.gb new file mode 100644 index 00000000..36a2a656 --- /dev/null +++ b/docs/notebooks/pCC1BAC.gb @@ -0,0 +1,262 @@ +LOCUS Exported 8139 bp DNA circular SYN 29-AUG-2024 +DEFINITION Cloning vector pCC1BAC, complete sequence. +ACCESSION . +VERSION . +KEYWORDS . +SOURCE synthetic DNA construct + ORGANISM synthetic DNA construct +REFERENCE 1 (bases 1 to 8139) + AUTHORS EPICENTRE Biotechnologies. + TITLE Direct Submission + JOURNAL Submitted (23-AUG-2007) 726 Post Road, Madison, WI 53713, USA +REFERENCE 2 (bases 1 to 8139) + TITLE Direct Submission +REFERENCE 3 (bases 1 to 8139) + TITLE Direct Submission +REFERENCE 4 (bases 1 to 8139) + AUTHORS . + TITLE Direct Submission +COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Submitted + (23-AUG-2007) 726 Post Road, Madison, WI 53713, USA" +COMMENT SGRef: number: 2; type: "Journal Article" +COMMENT SGRef: number: 3; type: "Journal Article" +FEATURES Location/Qualifiers + source 1..8139 + /mol_type="other DNA" + /organism="synthetic DNA construct" + source 359..370 + /mol_type="other DNA" + /organism="synthetic DNA construct" + primer_bind 288..304 + /label=M13 fwd + /note="common sequencing primer, one of multiple similar + variants" + promoter 311..329 + /label=T7 promoter + /note="promoter for bacteriophage T7 RNA polymerase" + misc_feature 332..400 + /label=MCS + /note="pUC18/19 multiple cloning site" + misc_feature 359..370 + /label=MCS + /note="pUC18/19 multiple cloning site" + primer_bind complement(443..459) + /label=M13 rev + /note="common sequencing primer, one of multiple similar + variants" + protein_bind complement(467..483) + /label=lac operator + /note="The lac repressor binds to the lac operator to + inhibit transcription in E. coli. This inhibition can be + relieved by adding lactose or + isopropyl-beta-D-thiogalactopyranoside (IPTG)." + promoter complement(491..521) + /label=lac promoter + /note="promoter for the E. coli lac operon" + protein_bind complement(536..557) + /label=CAP binding site + /note="CAP binding activates transcription in the presence + of cAMP." + CDS complement(780..1436) + /codon_start=1 + /label=CmR + /note="chloramphenicol acetyltransferase" + /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL + KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS + LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM + DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA" + promoter complement(1437..1539) + /label=cat promoter + /note="promoter of the E. coli cat gene encoding + chloramphenicol acetyltransferase" + rep_origin 2397..3011 + /label=oriV + /note="origin of replication for the bacterial F plasmid" + rep_origin 3087..3306 + /label=ori2 + /note="secondary origin of replication for the bacterial F + plasmid; also known as oriS" + CDS 3397..4149 + /codon_start=1 + /label=repE + /note="replication initiation protein for the bacterial F + plasmid" + /translation="MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQ + IRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAG + DEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAM + RLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM + RLSYIEKKKGRQTTHIVFSFRDITSMTTG" + misc_feature 4155..4405 + /label=incC + /note="incompatibility region of the bacterial F plasmid" + CDS 4731..5903 + /codon_start=1 + /label=sopA + /note="partitioning protein for the bacterial F plasmid" + /translation="MFRMKLMETLNQCINAGHEMTKAIAIAQFNDDSPEARKITRRWRI + GEAADLVGVSSQAIRDAEKAGRLPHPDMEIRGRVEQRVGYTIEQINHMRDVFGTRLRRA + EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL + HIHAEDTLLPFYLGEKDDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTD + PHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFF + DMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKNVVRETDE + VGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR" + CDS 5906..6874 + /codon_start=1 + /label=sopB + /note="partitioning protein for the bacterial F plasmid" + /translation="MKRAPVIPKHTLNTQPVEDTSLSTPAAPMVDSLIARVGVMARGNA + ITLPVCGRDVKFTLEVLRGDSVEKTSRVWSGNERDQELLTEDALDDLIPSFLLTGQQTP + AFGRRVSGVIEIADGSRRRKAAALTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYER + GQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGD + ALQKAFTDKEELLKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLSSRHQF + APGATVLYKGDKMVLNLDRSRVPTECIEKIEAILKELEKPAP" + misc_feature 6950..7423 + /label=sopC + /note="centromere-like partitioning region of the bacterial + F plasmid" + misc_feature complement(7683..8081) + /label=cos + /note="lambda cos site; allows packaging into phage lambda + particles" + protein_bind complement(8099..8132) + /label=loxP + /note="Cre-mediated recombination occurs in the 8-bp core + sequence (ATGTATGC) (Shaw et al., 2021)." +ORIGIN + 1 gcggccgcaa ggggttcgcg tcagcgggtg ttggcgggtg tcggggctgg cttaactatg + 61 cggcatcaga gcagattgta ctgagagtgc accatatgcg gtgtgaaata ccgcacagat + 121 gcgtaaggag aaaataccgc atcaggcgcc attcgccatt cagctgcgca actgttggga + 181 agggcgatcg gtgcgggcct cttcgctatt acgccagctg gcgaaagggg gatgtgctgc + 241 aaggcgatta agttgggtaa cgccagggtt ttcccagtca cgacgttgta aaacgacggc + 301 cagtgaattg taatacgact cactataggg cgaattcgag ctcggtaccc ggggatccca + 361 cgtgggatcc tctagagtcg acctgcaggc atgcaagctt gagtattcta tagtctcacc + 421 taaatagctt ggcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca + 481 caattccaca caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag + 541 tgagctaact cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt + 601 cgtgccagct gcattaatga atcggccaac gcgaacccct tgcggccgcc cgggccgtcg + 661 accaattctc atgtttgaca gcttatcatc gaatttctgc cattcatccg cttattatca + 721 cttattcagg cgtagcaacc aggcgtttaa gggcaccaat aactgcctta aaaaaattac + 781 gccccgccct gccactcatc gcagtactgt tgtaattcat taagcattct gccgacatgg + 841 aagccatcac aaacggcatg atgaacctga atcgccagcg gcatcagcac cttgtcgcct + 901 tgcgtataat atttgcccat ggtgaaaacg ggggcgaaga agttgtccat attggccacg + 961 tttaaatcaa aactggtgaa actcacccag ggattggctg agacgaaaaa catattctca + 1021 ataaaccctt tagggaaata ggccaggttt tcaccgtaac acgccacatc ttgcgaatat + 1081 atgtgtagaa actgccggaa atcgtcgtgg tattcactcc agagcgatga aaacgtttca + 1141 gtttgctcat ggaaaacggt gtaacaaggg tgaacactat cccatatcac cagctcaccg + 1201 tctttcattg ccatacgaaa ttccggatga gcattcatca ggcgggcaag aatgtgaata + 1261 aaggccggat aaaacttgtg cttatttttc tttacggtct ttaaaaaggc cgtaatatcc + 1321 agctgaacgg tctggttata ggtacattga gcaactgact gaaatgcctc aaaatgttct + 1381 ttacgatgcc attgggatat atcaacggtg gtatatccag tgattttttt ctccatttta + 1441 gcttccttag ctcctgaaaa tctcgataac tcaaaaaata cgcccggtag tgatcttatt + 1501 tcattatggt gaaagttgga acctcttacg tgccgatcaa cgtctcattt tcgccaaaag + 1561 ttggcccagg gcttcccggt atcaacaggg acaccaggat ttatttattc tgcgaagtga + 1621 tcttccgtca caggtattta ttcgcgataa gctcatggag cggcgtaacc gtcgcacagg + 1681 aaggacagag aaagcgcgga tctgggaagt gacggacaga acggtcagga cctggattgg + 1741 ggaggcggtt gccgccgctg ctgctgacgg tgtgacgttc tctgttccgg tcacaccaca + 1801 tacgttccgc cattcctatg cgatgcacat gctgtatgcc ggtataccgc tgaaagttct + 1861 gcaaagcctg atgggacata agtccatcag ttcaacggaa gtctacacga aggtttttgc + 1921 gctggatgtg gctgcccggc accgggtgca gtttgcgatg ccggagtctg atgcggttgc + 1981 gatgctgaaa caattatcct gagaataaat gccttggcct ttatatggaa atgtggaact + 2041 gagtggatat gctgtttttg tctgttaaac agagaagctg gctgttatcc actgagaagc + 2101 gaacgaaaca gtcgggaaaa tctcccatta tcgtagagat ccgcattatt aatctcagga + 2161 gcctgtgtag cgtttatagg aagtagtgtt ctgtcatgat gcctgcaagc ggtaacgaaa + 2221 acgatttgaa tatgccttca ggaacaatag aaatcttcgt gcggtgttac gttgaagtgg + 2281 agcggattat gtcagcaatg gacagaacaa cctaatgaac acagaaccat gatgtggtct + 2341 gtccttttac agccagtagt gctcgccgca gtcgagcgac agggcgaagc cctcggctgg + 2401 ttgccctcgc cgctgggctg gcggccgtct atggccctgc aaacgcgcca gaaacgccgt + 2461 cgaagccgtg tgcgagacac cgcggccggc cgccggcgtt gtggatacct cgcggaaaac + 2521 ttggccctca ctgacagatg aggggcggac gttgacactt gaggggccga ctcacccggc + 2581 gcggcgttga cagatgaggg gcaggctcga tttcggccgg cgacgtggag ctggccagcc + 2641 tcgcaaatcg gcgaaaacgc ctgattttac gcgagtttcc cacagatgat gtggacaagc + 2701 ctggggataa gtgccctgcg gtattgacac ttgaggggcg cgactactga cagatgaggg + 2761 gcgcgatcct tgacacttga ggggcagagt gctgacagat gaggggcgca cctattgaca + 2821 tttgaggggc tgtccacagg cagaaaatcc agcatttgca agggtttccg cccgtttttc + 2881 ggccaccgct aacctgtctt ttaacctgct tttaaaccaa tatttataaa ccttgttttt + 2941 aaccagggct gcgccctgtg cgcgtgaccg cgcacgccga aggggggtgc ccccccttct + 3001 cgaaccctcc cggtcgagtg agcgaggaag caccagggaa cagcacttat atattctgct + 3061 tacacacgat gcctgaaaaa acttcccttg gggttatcca cttatccacg gggatatttt + 3121 tataattatt ttttttatag tttttagatc ttctttttta gagcgccttg taggccttta + 3181 tccatgctgg ttctagagaa ggtgttgtga caaattgccc tttcagtgtg acaaatcacc + 3241 ctcaaatgac agtcctgtct gtgacaaatt gcccttaacc ctgtgacaaa ttgccctcag + 3301 aagaagctgt tttttcacaa agttatccct gcttattgac tcttttttat ttagtgtgac + 3361 aatctaaaaa cttgtcacac ttcacatgga tctgtcatgg cggaaacagc ggttatcaat + 3421 cacaagaaac gtaaaaatag cccgcgaatc gtccagtcaa acgacctcac tgaggcggca + 3481 tatagtctct cccgggatca aaaacgtatg ctgtatctgt tcgttgacca gatcagaaaa + 3541 tctgatggca ccctacagga acatgacggt atctgcgaga tccatgttgc taaatatgct + 3601 gaaatattcg gattgacctc tgcggaagcc agtaaggata tacggcaggc attgaagagt + 3661 ttcgcgggga aggaagtggt tttttatcgc cctgaagagg atgccggcga tgaaaaaggc + 3721 tatgaatctt ttccttggtt tatcaaacgt gcgcacagtc catccagagg gctttacagt + 3781 gtacatatca acccatatct cattcccttc tttatcgggt tacagaaccg gtttacgcag + 3841 tttcggctta gtgaaacaaa agaaatcacc aatccgtatg ccatgcgttt atacgaatcc + 3901 ctgtgtcagt atcgtaagcc ggatggctca ggcatcgtct ctctgaaaat cgactggatc + 3961 atagagcgtt accagctgcc tcaaagttac cagcgtatgc ctgacttccg ccgccgcttc + 4021 ctgcaggtct gtgttaatga gatcaacagc agaactccaa tgcgcctctc atacattgag + 4081 aaaaagaaag gccgccagac gactcatatc gtattttcct tccgcgatat cacttccatg + 4141 acgacaggat agtctgaggg ttatctgtca cagatttgag ggtggttcgt cacatttgtt + 4201 ctgacctact gagggtaatt tgtcacagtt ttgctgtttc cttcagcctg catggatttt + 4261 ctcatacttt ttgaactgta atttttaagg aagccaaatt tgagggcagt ttgtcacagt + 4321 tgatttcctt ctctttccct tcgtcatgtg acctgatatc gggggttagt tcgtcatcat + 4381 tgatgagggt tgattatcac agtttattac tctgaattgg ctatccgcgt gtgtacctct + 4441 acctggagtt tttcccacgg tggatatttc ttcttgcgct gagcgtaaga gctatctgac + 4501 agaacagttc ttctttgctt cctcgccagt tcgctcgcta tgctcggtta cacggctgcg + 4561 gcgagcgcta gtgataataa gtgactgagg tatgtgctct tcttatctcc ttttgtagtg + 4621 ttgctcttat tttaaacaac tttgcggttt tttgatgact ttgcgatttt gttgttgctt + 4681 tgcagtaaat tgcaagattt aataaaaaaa cgcaaagcaa tgattaaagg atgttcagaa + 4741 tgaaactcat ggaaacactt aaccagtgca taaacgctgg tcatgaaatg acgaaggcta + 4801 tcgccattgc acagtttaat gatgacagcc cggaagcgag gaaaataacc cggcgctgga + 4861 gaataggtga agcagcggat ttagttgggg tttcttctca ggctatcaga gatgccgaga + 4921 aagcagggcg actaccgcac ccggatatgg aaattcgagg acgggttgag caacgtgttg + 4981 gttatacaat tgaacaaatt aatcatatgc gtgatgtgtt tggtacgcga ttgcgacgtg + 5041 ctgaagacgt atttccaccg gtgatcgggg ttgctgccca taaaggtggc gtttacaaaa + 5101 cctcagtttc tgttcatctt gctcaggatc tggctctgaa ggggctacgt gttttgctcg + 5161 tggaaggtaa cgacccccag ggaacagcct caatgtatca cggatgggta ccagatcttc + 5221 atattcatgc agaagacact ctcctgcctt tctatcttgg ggaaaaggac gatgtcactt + 5281 atgcaataaa gcccacttgc tggccggggc ttgacattat tccttcctgt ctggctctgc + 5341 accgtattga aactgagtta atgggcaaat ttgatgaagg taaactgccc accgatccac + 5401 acctgatgct ccgactggcc attgaaactg ttgctcatga ctatgatgtc atagttattg + 5461 acagcgcgcc taacctgggt atcggcacga ttaatgtcgt atgtgctgct gatgtgctga + 5521 ttgttcccac gcctgctgag ttgtttgact acacctccgc actgcagttt ttcgatatgc + 5581 ttcgtgatct gctcaagaac gttgatctta aagggttcga gcctgatgta cgtattttgc + 5641 ttaccaaata cagcaatagt aatggctctc agtccccgtg gatggaggag caaattcggg + 5701 atgcctgggg aagcatggtt ctaaaaaatg ttgtacgtga aacggatgaa gttggtaaag + 5761 gtcagatccg gatgagaact gtttttgaac aggccattga tcaacgctct tcaactggtg + 5821 cctggagaaa tgctctttct atttgggaac ctgtctgcaa tgaaattttc gatcgtctga + 5881 ttaaaccacg ctgggagatt agataatgaa gcgtgcgcct gttattccaa aacatacgct + 5941 caatactcaa ccggttgaag atacttcgtt atcgacacca gctgccccga tggtggattc + 6001 gttaattgcg cgcgtaggag taatggctcg cggtaatgcc attactttgc ctgtatgtgg + 6061 tcgggatgtg aagtttactc ttgaagtgct ccggggtgat agtgttgaga agacctctcg + 6121 ggtatggtca ggtaatgaac gtgaccagga gctgcttact gaggacgcac tggatgatct + 6181 catcccttct tttctactga ctggtcaaca gacaccggcg ttcggtcgaa gagtatctgg + 6241 tgtcatagaa attgccgatg ggagtcgccg tcgtaaagct gctgcactta ccgaaagtga + 6301 ttatcgtgtt ctggttggcg agctggatga tgagcagatg gctgcattat ccagattggg + 6361 taacgattat cgcccaacaa gtgcttatga acgtggtcag cgttatgcaa gccgattgca + 6421 gaatgaattt gctggaaata tttctgcgct ggctgatgcg gaaaatattt cacgtaagat + 6481 tattacccgc tgtatcaaca ccgccaaatt gcctaaatca gttgttgctc ttttttctca + 6541 ccccggtgaa ctatctgccc ggtcaggtga tgcacttcaa aaagccttta cagataaaga + 6601 ggaattactt aagcagcagg catctaacct tcatgagcag aaaaaagctg gggtgatatt + 6661 tgaagctgaa gaagttatca ctcttttaac ttctgtgctt aaaacgtcat ctgcatcaag + 6721 aactagttta agctcacgac atcagtttgc tcctggagcg acagtattgt ataagggcga + 6781 taaaatggtg cttaacctgg acaggtctcg tgttccaact gagtgtatag agaaaattga + 6841 ggccattctt aaggaacttg aaaagccagc accctgatgc gaccacgttt tagtctacgt + 6901 ttatctgtct ttacttaatg tcctttgtta caggccagaa agcataactg gcctgaatat + 6961 tctctctggg cccactgttc cacttgtatc gtcggtctga taatcagact gggaccacgg + 7021 tcccactcgt atcgtcggtc tgattattag tctgggacca cggtcccact cgtatcgtcg + 7081 gtctgattat tagtctggga ccacggtccc actcgtatcg tcggtctgat aatcagactg + 7141 ggaccacggt cccactcgta tcgtcggtct gattattagt ctgggaccat ggtcccactc + 7201 gtatcgtcgg tctgattatt agtctgggac cacggtccca ctcgtatcgt cggtctgatt + 7261 attagtctgg aaccacggtc ccactcgtat cgtcggtctg attattagtc tgggaccacg + 7321 gtcccactcg tatcgtcggt ctgattatta gtctgggacc acgatcccac tcgtgttgtc + 7381 ggtctgatta tcggtctggg accacggtcc cacttgtatt gtcgatcaga ctatcagcgt + 7441 gagactacga ttccatcaat gcctgtcaag ggcaagtatt gacatgtcgt cgtaacctgt + 7501 agaacggagt aacctcggtg tgcggttgta tgcctgctgt ggattgctgc tgtgtcctgc + 7561 ttatccacaa cattttgcgc acggttatgt ggacaaaata cctggttacc caggccgtgc + 7621 cggcacgtta accgggctgc atccgatgca agtgtgtcgc tgtcgacgag ctcgcgagct + 7681 cggacatgag gttgccccgt attcagtgtc gctgatttgt attgtctgaa gttgttttta + 7741 cgttaagttg atgcagatca attaatacga tacctgcgtc ataattgatt atttgacgtg + 7801 gtttgatggc ctccacgcac gttgtgatat gtagatgata atcattatca ctttacgggt + 7861 cctttccggt gatccgacag gttacggggc ggcgacctcg cgggttttcg ctatttatga + 7921 aaattttccg gtttaaggcg tttccgttct tcttcgtcat aacttaatgt ttttatttaa + 7981 aataccctct gaaaagaaag gaaacgacag gtgctgaaag cgagcttttt ggcctctgtc + 8041 gtttcctttc tctgtttttg tccgtggaat gaacaatgga agtccgagct catcgctaat + 8101 aacttcgtat agcatacatt atacgaagtt atattcgat +// diff --git a/docs/notebooks/pFA6a-kanMX6.gb b/docs/notebooks/pFA6a-kanMX6.gb new file mode 100644 index 00000000..ffcd7912 --- /dev/null +++ b/docs/notebooks/pFA6a-kanMX6.gb @@ -0,0 +1,169 @@ +LOCUS pFA6a-kanMX6 3938 bp ds-DNA circular SYN 16-JUN-2022 +DEFINITION synthetic circular DNA. +ACCESSION . +VERSION . +KEYWORDS pFA6a-kanMX6. +SOURCE synthetic DNA construct + ORGANISM synthetic DNA construct + . +REFERENCE 1 (bases 1 to 3938) + AUTHORS Bahler J, Wu JQ, Longtine MS, Shah NG, McKenzie A 3rd, Steever AB, + Wach A, Philippsen P, Pringle JR + TITLE Heterologous modules for efficient and versatile PCR-based gene + targeting in Schizosaccharomyces pombe. + JOURNAL Yeast. 1998 Jul;14(10):943-51. + PUBMED 9717240 +REFERENCE 2 (bases 1 to 3938) + AUTHORS . + TITLE Direct Submission + JOURNAL Exported Jun 16, 2022 from SnapGene Server 1.1.58 + http://www.snapgene.com +FEATURES Location/Qualifiers + source 1..3938 + /organism="synthetic DNA construct" + /mol_type="other DNA" + primer_bind complement(35..52) + /label="L4440" + /note="L4440 vector, forward primer" + rep_origin complement(206..794) + /direction=LEFT + /label="ori" + /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of + replication" + primer_bind complement(286..305) + /label="pBR322ori-F" + /note="pBR322 origin, forward primer" + CDS complement(965..1825) + /codon_start=1 + /gene="bla" + /product="beta-lactamase" + /label="AmpR" + /note="confers resistance to ampicillin, carbenicillin, and + related antibiotics" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" + primer_bind 1588..1607 + /label="Amp-R" + /note="Ampicillin resistance gene, reverse primer" + promoter complement(1826..1930) + /gene="bla" + /label="AmpR promoter" + primer_bind 1998..2016 + /label="pBRforEco" + /note="pBR322 vectors, upsteam of EcoRI site, forward + primer" + primer_bind complement(2054..2076) + /label="pGEX 3'" + /note="pGEX vectors, reverse primer" + primer_bind 2176..2195 + /label="pRS-marker" + /note="pRS vectors, use to sequence yeast selectable + marker" + promoter 2276..2294 + /label="SP6 promoter" + /note="promoter for bacteriophage SP6 RNA polymerase" + primer_bind 2276..2293 + /label="SP6" + /note="SP6 promoter, forward primer" + gene 2407..3763 + /label="kanMX" + /note="yeast selectable marker conferring kanamycin + resistance (Wach et al., 1994)" + promoter 2407..2750 + /label="TEF promoter" + /note="Ashbya gossypii TEF promoter" + CDS 2751..3560 + /codon_start=1 + /gene="aph(3')-Ia" + /product="aminoglycoside phosphotransferase" + /label="KanR" + /note="confers resistance to kanamycin" + /translation="MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP + DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA + FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD + FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD + RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" + primer_bind complement(2818..2837) + /label="Kan-R" + /note="Kanamycin resistance gene, reverse primer" + terminator 3566..3763 + /label="TEF terminator" + /note="Ashbya gossypii TEF terminator" + primer_bind complement(3867..3886) + /label="T7" + /note="T7 promoter, forward primer" + promoter complement(3868..3886) + /label="T7 promoter" + /note="promoter for bacteriophage T7 RNA polymerase" +ORIGIN + 1 gaggcggttt gcgtattggg cgctcttccg cttcctcgct cactgactcg ctgcgctcgg + 61 tcgttcggct gcggcgagcg gtatcagctc actcaaaggc ggtaatacgg ttatccacag + 121 aatcagggga taacgcagga aagaacatgt gagcaaaagg ccagcaaaag gccaggaacc + 181 gtaaaaaggc cgcgttgctg gcgtttttcc ataggctccg cccccctgac gagcatcaca + 241 aaaatcgacg ctcaagtcag aggtggcgaa acccgacagg actataaaga taccaggcgt + 301 ttccccctgg aagctccctc gtgcgctctc ctgttccgac cctgccgctt accggatacc + 361 tgtccgcctt tctcccttcg ggaagcgtgg cgctttctca tagctcacgc tgtaggtatc + 421 tcagttcggt gtaggtcgtt cgctccaagc tgggctgtgt gcacgaaccc cccgttcagc + 481 ccgaccgctg cgccttatcc ggtaactatc gtcttgagtc caacccggta agacacgact + 541 tatcgccact ggcagcagcc actggtaaca ggattagcag agcgaggtat gtaggcggtg + 601 ctacagagtt cttgaagtgg tggcctaact acggctacac tagaagaaca gtatttggta + 661 tctgcgctct gctgaagcca gttaccttcg gaaaaagagt tggtagctct tgatccggca + 721 aacaaaccac cgctggtagc ggtggttttt ttgtttgcaa gcagcagatt acgcgcagaa + 781 aaaaaggatc tcaagaagat cctttgatct tttctacggg gtctgacgct cagtggaacg + 841 aaaactcacg ttaagggatt ttggtcatga gattatcaaa aaggatcttc acctagatcc + 901 ttttaaatta aaaatgaagt tttaaatcaa tctaaagtat atatgagtaa acttggtctg + 961 acagttacca atgcttaatc agtgaggcac ctatctcagc gatctgtcta tttcgttcat + 1021 ccatagttgc ctgactcccc gtcgtgtaga taactacgat acgggagggc ttaccatctg + 1081 gccccagtgc tgcaatgata ccgcgagacc cacgctcacc ggctccagat ttatcagcaa + 1141 taaaccagcc agccggaagg gccgagcgca gaagtggtcc tgcaacttta tccgcctcca + 1201 tccagtctat taattgttgc cgggaagcta gagtaagtag ttcgccagtt aatagtttgc + 1261 gcaacgttgt tgccattgct acaggcatcg tggtgtcacg ctcgtcgttt ggtatggctt + 1321 cattcagctc cggttcccaa cgatcaaggc gagttacatg atcccccatg ttgtgcaaaa + 1381 aagcggttag ctccttcggt cctccgatcg ttgtcagaag taagttggcc gcagtgttat + 1441 cactcatggt tatggcagca ctgcataatt ctcttactgt catgccatcc gtaagatgct + 1501 tttctgtgac tggtgagtac tcaaccaagt cattctgaga atagtgtatg cggcgaccga + 1561 gttgctcttg cccggcgtca atacgggata ataccgcgcc acatagcaga actttaaaag + 1621 tgctcatcat tggaaaacgt tcttcggggc gaaaactctc aaggatctta ccgctgttga + 1681 gatccagttc gatgtaaccc actcgtgcac ccaactgatc ttcagcatct tttactttca + 1741 ccagcgtttc tgggtgagca aaaacaggaa ggcaaaatgc cgcaaaaaag ggaataaggg + 1801 cgacacggaa atgttgaata ctcatactct tcctttttca atattattga agcatttatc + 1861 agggttattg tctcatgagc ggatacatat ttgaatgtat ttagaaaaat aaacaaatag + 1921 gggttccgcg cacatttccc cgaaaagtgc cacctgacgt ctaagaaacc attattatca + 1981 tgacattaac ctataaaaat aggcgtatca cgaggccctt tcgtctcgcg cgtttcggtg + 2041 atgacggtga aaacctctga cacatgcagc tcccggagac ggtcacagct tgtctgtaag + 2101 cggatgccgg gagcagacaa gcccgtcagg gcgcgtcagc gggtgttggc gggtgtcggg + 2161 gctggcttaa ctatgcggca tcagagcaga ttgtactgag agtgcaccat atggacatat + 2221 tgtcgttaga acgcggctac aattaataca taaccttatg tatcatacac atacgattta + 2281 ggtgacacta tagaacgcgg ccgccagctg aagcttcgta cgctgcaggt cgacggatcc + 2341 ccgggttaat taaggcgcgc cagatctgtt tagcttgcct cgtccccgcc gggtcacccg + 2401 gccagcgaca tggaggccca gaataccctc cttgacagtc ttgacgtgcg cagctcaggg + 2461 gcatgatgtg actgtcgccc gtacatttag cccatacatc cccatgtata atcatttgca + 2521 tccatacatt ttgatggccg cacggcgcga agcaaaaatt acggctcctc gctgcagacc + 2581 tgcgagcagg gaaacgctcc cctcacagac gcgttgaatt gtccccacgc cgcgcccctg + 2641 tagagaaata taaaaggtta ggatttgcca ctgaggttct tctttcatat acttcctttt + 2701 aaaatcttgc taggatacag ttctcacatc acatccgaac ataaacaacc atgggtaagg + 2761 aaaagactca cgtttcgagg ccgcgattaa attccaacat ggatgctgat ttatatgggt + 2821 ataaatgggc tcgcgataat gtcgggcaat caggtgcgac aatctatcga ttgtatggga + 2881 agcccgatgc gccagagttg tttctgaaac atggcaaagg tagcgttgcc aatgatgtta + 2941 cagatgagat ggtcagacta aactggctga cggaatttat gcctcttccg accatcaagc + 3001 attttatccg tactcctgat gatgcatggt tactcaccac tgcgatcccc ggcaaaacag + 3061 cattccaggt attagaagaa tatcctgatt caggtgaaaa tattgttgat gcgctggcag + 3121 tgttcctgcg ccggttgcat tcgattcctg tttgtaattg tccttttaac agcgatcgcg + 3181 tatttcgtct cgctcaggcg caatcacgaa tgaataacgg tttggttgat gcgagtgatt + 3241 ttgatgacga gcgtaatggc tggcctgttg aacaagtctg gaaagaaatg cataagcttt + 3301 tgccattctc accggattca gtcgtcactc atggtgattt ctcacttgat aaccttattt + 3361 ttgacgaggg gaaattaata ggttgtattg atgttggacg agtcggaatc gcagaccgat + 3421 accaggatct tgccatccta tggaactgcc tcggtgagtt ttctccttca ttacagaaac + 3481 ggctttttca aaaatatggt attgataatc ctgatatgaa taaattgcag tttcatttga + 3541 tgctcgatga gtttttctaa tcagtactga caataaaaag attcttgttt tcaagaactt + 3601 gtcatttgta tagttttttt atattgtagt tgttctattt taatcaaatg ttagcgtgat + 3661 ttatattttt tttcgcctcg acatcatctg cccagatgcg aagttaagtg cgcagaaagt + 3721 aatatcatgc gtcaatcgta tgtgaatgct ggtcgctata ctgctgtcga ttcgatacta + 3781 acgccgccat ccagtttaaa cgagctcgaa ttcatcgatg atatcagatc cactagtggc + 3841 ctatgcggcc gcggatctgc cggtctccct atagtgagtc gtattaattt cgataagcca + 3901 ggttaacctg cattaatgaa tcggccaacg cgcgggga +// \ No newline at end of file diff --git a/docs/notebooks/primer_design.ipynb b/docs/notebooks/primer_design.ipynb new file mode 100644 index 00000000..859bb2af --- /dev/null +++ b/docs/notebooks/primer_design.ipynb @@ -0,0 +1,454 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Primer design in pydna\n", + "\n", + "You can use `pydna` for primer design in different contexts, let's start with some basic primer functionalities." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Checking the Tm of a primer\n", + "\n", + "Primer design in pydna is very flexible, and supports different methods. For typical use-cases, we recommend using `tm_default`, which uses the method `Bio.SeqUtils.MeltingTemp` from biopython, nearest neighbor thermodynamics values from [SantaLucia & Hicks (2004)](https://pubmed.ncbi.nlm.nih.gov/15139820/) and common values for nucleotide concentration, salt concentration, etc. You can of course change those settings. For a full dive check `src/pydna/tm.py`." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "55.047602641480864\n", + "54.55481807340169\n" + ] + } + ], + "source": [ + "from pydna.tm import tm_default\n", + "\n", + "# The primers from the readme example\n", + "print(tm_default(\"ATGCAAACAGTAATGATGGA\"))\n", + "print(tm_default(\"ATTATCTTTTTCAGCAATAGAATCA\"))\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Using NEB Tm calculator\n", + "\n", + "If you are used to the NEB Tm calculator, and you want to use it programmatically, you can do so as well. The function takes three arguments:\n", + "\n", + "- `primer`: The primer sequence.\n", + "- `conc`: The primer concentration.\n", + "- `prodcode`: The product code, which you can find on [NEB's website](https://tmapi.neb.com/docs/productcodes).\n", + "\n", + "> **NOTE:** When you call the function, it will make a request to the NEB server. This makes it much slower than using the builtin methods. In addition, we cannot guarantee that the NEB server will always be available, nor that the calculations that they use will not change in the future, since the code is not available." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "59\n", + "57\n" + ] + } + ], + "source": [ + "from pydna.tm import tm_neb\n", + "\n", + "print(tm_neb(\"ATGCAAACAGTAATGATGGA\", 0.5, \"q5-0\"))\n", + "print(tm_neb(\"ATTATCTTTTTCAGCAATAGAATCA\", 0.5, \"q5-0\"))\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Designing primers for PCR\n", + "\n", + "Let's use pydna to amplify a region from a DNA sequence. You can use the `primer_design` function to design primers for a given target Tm (`target_tm`) and indicate a minimum primer hybridization length in basepairs (`limit`)." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Forward primer Tm: 59.71997924024873\n", + "Forward primer sequence: ATGCAAACAGTAATGATGGATGAC\n", + "\n", + "Reverse primer Tm: 60.22377911083646\n", + "Reverse primer sequence: TTATTCAGCAATAGAATCAGTGCTTTG\n" + ] + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "from Bio.SeqFeature import SeqFeature, SimpleLocation\n", + "from pydna.design import primer_design\n", + "\n", + "dna = Dseqrecord(\"ggttcaATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAATAAcatttacatca\")\n", + "\n", + "# Let's add a feature representing the CDS\n", + "dna.features.append(SeqFeature(SimpleLocation(start=6, end=60), type=\"CDS\"))\n", + "\n", + "# To design the primer, we extract the template sequence we want to amplify, and use the `primer_design` method.\n", + "template = dna.features[0].location.extract(dna)\n", + "\n", + "# We get an amplicon object (a subclass of Dseqrecord), that also contains extra info\n", + "# of where the primers align etc.\n", + "amplicon = primer_design(template, target_tm=60.0, limit=15)\n", + "\n", + "# We extract the primers\n", + "fwd_primer, rvs_primer = amplicon.primers()\n", + "\n", + "# We print the Tms\n", + "print(\"Forward primer Tm:\", tm_default(fwd_primer.seq))\n", + "print(\"Forward primer sequence:\", fwd_primer.seq)\n", + "print()\n", + "print(\"Reverse primer Tm:\", tm_default(rvs_primer.seq))\n", + "print(\"Reverse primer sequence:\", rvs_primer.seq)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Special primers\n", + "\n", + "We saw an example where we simply want to amplify a region of DNA. But what if we want to design primers for a specific restriction enzyme, or for Gibson Assembly? That's also easy." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Restriction enzyme\n", + "\n", + "Simply append the sequence you want at the 5' end of the primers." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ttGAATTCATGCAAACAGTAATGATGGATGAC\n", + "ttGAATTCTTATTCAGCAATAGAATCAGTGCTTTG\n" + ] + } + ], + "source": [ + "from Bio.Restriction import EcoRI\n", + "fwd_primer_EcoRI = 'ttGAATTC' + fwd_primer\n", + "# You can also do it like this!\n", + "rvs_primer_EcoRI = 'tt' + EcoRI.site + rvs_primer\n", + "\n", + "print(fwd_primer_EcoRI.seq)\n", + "print(rvs_primer_EcoRI.seq)\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "> **Edge case:** Some recognition sites contain ambiguous bases, for instance `Bst4CI` cuts at site `ACNGT`, where `N` can be any nucleotide. In that case, you can use the dictionary provided by biopython (`from Bio.Data.IUPACData import ambiguous_dna_values`) to produce a concrete DNA sequence you can use in real life." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Gibson Assembly\n", + "\n", + "To design primers for Gibson Assembly, you can use the `assembly_fragments` function." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "##### Linear Gibson Assembly" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Primers for fragment 1:\n", + "ATGCAAACAGTAATGATGGATGAC\n", + "GAGTGATTATCTTTTTCAGCAATAGAATCAGTGC\n", + "\n", + "Primers for fragment 2:\n", + "ATAATCACTCTAATAATGAATCTAACTTTACTTGGAAA\n", + "ATGCTTTTCCACTTGTTCACG\n", + "\n", + "PCR product 1:\n", + "ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATCACTC\n", + "\n", + "PCR product 2:\n", + "ATAATCACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAAAGCAT\n", + "\n", + "Overlap\n", + "ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATCACTC\n", + " ATAATCACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAAAGCAT\n" + ] + } + ], + "source": [ + "from pydna.design import assembly_fragments\n", + "# Let's imagine we want to join these two sequences together linearly with Gibson Assembly\n", + "seq1 = Dseqrecord('ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT')\n", + "seq2 = Dseqrecord('CACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAAAGCAT')\n", + "\n", + "# First, we design primers for each fragment, as before:\n", + "pre_amplicon1 = primer_design(seq1, target_tm=60.0, limit=15)\n", + "pre_amplicon2 = primer_design(seq2, target_tm=60.0, limit=15)\n", + "\n", + "# Then, we use the `assembly_fragments` function to design primers for Gibson Assembly\n", + "amplicon1, amplicon2 = assembly_fragments([pre_amplicon1, pre_amplicon2], overlap=10)\n", + "\n", + "# We print the primers:\n", + "fwd_1, rvs_1 = amplicon1.primers()\n", + "fwd_2, rvs_2 = amplicon2.primers()\n", + "\n", + "print('Primers for fragment 1:')\n", + "print(fwd_1.seq)\n", + "print(rvs_1.seq)\n", + "print()\n", + "print('Primers for fragment 2:')\n", + "print(fwd_2.seq)\n", + "print(rvs_2.seq)\n", + "print()\n", + "\n", + "# The amplicons contain the PCR products (note the overlap between the two fragments)\n", + "print('PCR product 1:')\n", + "print(amplicon1.seq)\n", + "print()\n", + "print('PCR product 2:')\n", + "print(amplicon2.seq)\n", + "print()\n", + "\n", + "print('Overlap')\n", + "print(amplicon1.seq)\n", + "print(' '*55,amplicon2.seq, sep='')\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Once you have the amplicons, you can use `Assembly` to join them together (see the `Gibson` notebook for more details)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "65bp_PCR_prod|10\n", + " \\/\n", + " /\\\n", + " 10|65bp_PCR_prod\n", + "\n", + "Dseqrecord(-120)\n", + "\u001b[48;5;11mATGCAAACAGTAATGATGGATGAC\u001b[0mATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATCACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAAAGCAT\n", + "TACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTAGTGAGATTATTACTTAGATTGAAATGAACCTTTCGCAAAGCACTTGTTCACCTTTTCGTA\n" + ] + } + ], + "source": [ + "from pydna.assembly import Assembly\n", + "from pydna.common_sub_strings import terminal_overlap\n", + "\n", + "\n", + "assembly = Assembly([amplicon1, amplicon2], limit=10, algorithm=terminal_overlap)\n", + "product = assembly.assemble_linear()[0]\n", + "print(product.figure())\n", + "\n", + "print()\n", + "\n", + "print(Dseqrecord(product).figure())\n", + "\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "##### Circular Gibson Assembly" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Primers for fragment 1:\n", + "AGCATATGCAAACAGTAATGATGGATGAC\n", + "GAGTGATTATCTTTTTCAGCAATAGAATCAGTGC\n", + "\n", + "Primers for fragment 2:\n", + "ATAATCACTCTAATAATGAATCTAACTTTACTTGGAAA\n", + "TGCATATGCTTTTCCACTTGTTCACG\n", + "\n", + " -|70bp_PCR_prod|10\n", + "| \\/\n", + "| /\\\n", + "| 10|70bp_PCR_prod|10\n", + "| \\/\n", + "| /\\\n", + "| 10-\n", + "| |\n", + " ------------------------------------\n", + "\n", + "Dseqrecord(o120)\n", + "AGCAT\u001b[48;5;11mATGCAAACAGTAATGATGGATGAC\u001b[0mATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATCACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAA\n", + "TCGTATACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTAGTGAGATTATTACTTAGATTGAAATGAACCTTTCGCAAAGCACTTGTTCACCTTT\n" + ] + } + ], + "source": [ + "# We use the `assembly_fragments` function with `circular=True`\n", + "amplicon1, amplicon2 = assembly_fragments([pre_amplicon1, pre_amplicon2], overlap=10, circular=True)\n", + "\n", + "# We print the primers:\n", + "fwd_1, rvs_1 = amplicon1.primers()\n", + "fwd_2, rvs_2 = amplicon2.primers()\n", + "\n", + "print('Primers for fragment 1:')\n", + "print(fwd_1.seq)\n", + "print(rvs_1.seq)\n", + "print()\n", + "print('Primers for fragment 2:')\n", + "print(fwd_2.seq)\n", + "print(rvs_2.seq)\n", + "print()\n", + "\n", + "assembly = Assembly([amplicon1, amplicon2], limit=10, algorithm=terminal_overlap)\n", + "\n", + "# Here we use assemble_circular!\n", + "product = assembly.assemble_circular()[0]\n", + "print(product.figure())\n", + "\n", + "print()\n", + "\n", + "print(Dseqrecord(product).figure())" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Adding spacers / linkers to Gibson Assembly primers\n", + "\n", + "In this case, you can pass a list of `Amplicons` and `Dseqrecords` to the `assembly_fragments` function. The `amplicons` will be used as the fragments to assemble, and the `dseqrecords` will be used as spacers between the fragments, as long as they are shorter than the argument `maxlink`." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\n", + "GCATtttATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAATaaaCACTCTAATAATGAATCTAACTTTACTTGGAAAGCGTTTCGTGAACAAGTGGAAAA\n", + " ^^^ ^^^\n" + ] + } + ], + "source": [ + "# We create two spacers as dseqrecords\n", + "spacer1 = Dseqrecord('aaa')\n", + "spacer2 = Dseqrecord('ttt')\n", + "\n", + "amplicon1, amplicon2 = assembly_fragments([pre_amplicon1, spacer1, pre_amplicon2, spacer2], overlap=10, circular=True)\n", + "\n", + "assembly = Assembly([amplicon1, amplicon2], limit=10, algorithm=terminal_overlap)\n", + "\n", + "# Here we use assemble_circular!\n", + "product = assembly.assemble_circular()[0]\n", + "\n", + "# See the linkers that have been added\n", + "print()\n", + "print(Dseqrecord(product).seq)\n", + "print(4*' ', '^^^', 60*' ', '^^^', sep='')\n", + "\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Summary of assembly_fragments behaviour\n", + "\n", + "The behaviour is summarised in the following graphics for linear and circular assembly.\n", + "\n", + "![assembly_fragments behaviour](../_static/assembly_fragment_slide_linear.png)\n", + "![assembly_fragments behaviour](../_static/assembly_fragment_slide_circular.png)\n", + "\n" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/readme_example.ipynb b/docs/notebooks/readme_example.ipynb new file mode 100644 index 00000000..0aa31e1f --- /dev/null +++ b/docs/notebooks/readme_example.ipynb @@ -0,0 +1,369 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## README Example\n", + "\n", + "This notebook contains the example shown in the README file.\n", + "\n", + "\n", + " \"Open\n", + "" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Install pydna (only when running on Colab)\n", + "import sys\n", + "if 'google.colab' in sys.modules:\n", + " %%capture\n", + " # Install the current development version of pydna (comment to install pip version)\n", + " !pip install git+https://github.com/BjornFJohansson/pydna@dev_bjorn\n", + " # Install pip version instead (uncomment to install)\n", + " # !pip install pydna" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-60)\n", + "\u001b[48;5;11mATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT\u001b[0m\n", + "TACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTA" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "# Let's create a DNA sequence record, and add a feature to it\n", + "dsr = Dseqrecord(\"ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT\")\n", + "dsr.add_feature(x=0, y=60,type=\"gene\", label=\"my_gene\") # We add a feature to highlight the sequence as a gene\n", + "dsr.figure()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LOCUS name 60 bp DNA linear UNK 01-JAN-1980\n", + "DEFINITION description.\n", + "ACCESSION id\n", + "VERSION id\n", + "KEYWORDS .\n", + "SOURCE .\n", + " ORGANISM .\n", + " .\n", + "FEATURES Location/Qualifiers\n", + " misc 1..60\n", + " /type=\"gene\"\n", + " /label=\"my_gene\"\n", + "ORIGIN\n", + " 1 atgcaaacag taatgatgga tgacattcaa agcactgatt ctattgctga aaaagataat\n", + "//\n" + ] + } + ], + "source": [ + "# This is how it would look as a genbank file\n", + "print(dsr.format(\"genbank\"))" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "forward primer: ATGCAAACAGTAATGATGGA\n", + "reverse primer: ATTATCTTTTTCAGCAATAGAATCA\n" + ] + }, + { + "data": { + "text/plain": [ + "5ATGCAAACAGTAATGATGGA...TGATTCTATTGCTGAAAAAGATAAT3\n", + " |||||||||||||||||||||||||\n", + " 3ACTAAGATAACGACTTTTTCTATTA5\n", + "5ATGCAAACAGTAATGATGGA3\n", + " ||||||||||||||||||||\n", + "3TACGTTTGTCATTACTACCT...ACTAAGATAACGACTTTTTCTATTA5" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Now let's design primers to amplify it\n", + "from pydna.design import primer_design\n", + "# limit is the minimum length of the primer, target_tm is the desired melting temperature of the primer\n", + "amplicon = primer_design(dsr, limit=13, target_tm=55)\n", + "# Let's print the primers, and a figure that shows where they align with the template sequence\n", + "print(\"forward primer:\", amplicon.forward_primer.seq)\n", + "print(\"reverse primer:\", amplicon.reverse_primer.seq)\n", + "amplicon.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + " 5ATGCAAACAGTAATGATGGA...TGATTCTATTGCTGAAAAAGATAAT3\n", + " |||||||||||||||||||||||||\n", + " 3ACTAAGATAACGACTTTTTCTATTACCTAGGtttt5\n", + "5ccccGGATCCATGCAAACAGTAATGATGGA3\n", + " ||||||||||||||||||||\n", + " 3TACGTTTGTCATTACTACCT...ACTAAGATAACGACTTTTTCTATTA5" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Let's say we don't want to just amplify it, but we want to add restriction sites to it!\n", + "\n", + "from pydna.amplify import pcr\n", + "# We add the restriction sites to the primers\n", + "forward_primer = \"ccccGGATCC\" + amplicon.forward_primer\n", + "reverse_primer = \"ttttGGATCC\" + amplicon.reverse_primer\n", + "\n", + "# We do the PCR\n", + "pcr_product = pcr(forward_primer, reverse_primer, dsr)\n", + "# The PCR product is of class `Amplicon`, a subclass of `Dseqrecord`.\n", + "# When doing a figure, it shows where primers anneal.\n", + "pcr_product.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-80)\n", + "ccccGGATCC\u001b[48;5;11mATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT\u001b[0mGGATCCaaaa\n", + "ggggCCTAGGTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAGGtttt" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# If we want to see the sequence more clearly, we can turn it into a `Dseqrecord`\n", + "pcr_product = Dseqrecord(pcr_product)\n", + "pcr_product.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord(-9)\n", + "\u001b[48;5;11m\u001b[0mccccG \n", + "ggggCCTAG\n", + "\n", + "Dseqrecord(-70)\n", + "GATCC\u001b[48;5;11mATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT\u001b[0mG \n", + " GTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAG\n", + "\n", + "Dseqrecord(-9)\n", + "\u001b[48;5;11m\u001b[0mGATCCaaaa\n", + " Gtttt\n" + ] + } + ], + "source": [ + "from Bio.Restriction import BamHI # cuts GGATCC\n", + "# a, payload, c are the cut fragments\n", + "a, payload, c = pcr_product.cut (BamHI)\n", + "print(a.figure())\n", + "print()\n", + "print (payload.figure())\n", + "print()\n", + "print(c.figure())\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o50)\n", + "\u001b[48;5;11m\u001b[0maatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\n", + "ttacaaaaagggaGGGCCCgttttaTCTAGAacgatacgtagtagctaga" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# We create a circular vector to insert the amplicon into\n", + "vector = Dseqrecord(\"aatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\", circular=True, name=\"vect\")\n", + "vector.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o116)\n", + "aatgtttttccctCCCGGGcaaaatAGATCC\u001b[48;5;11mATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT\u001b[0mGGATCTtgctatgcatcatcgatct\n", + "ttacaaaaagggaGGGCCCgttttaTCTAGGTACGTTTGTCATTACTACCTACTGTAAGTTTCGTGACTAAGATAACGACTTTTTCTATTACCTAGAacgatacgtagtagctaga" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from Bio.Restriction import BglII # cuts AGATCT\n", + "linear_vector_bgl = vector.cut(BglII)[0] # Linearize the vector at BglII (produces only one fragment)\n", + "\n", + "# Ligate the fragment of interest to the vector, and call looped() to circularize it\n", + "# synced is used to place the origin coordinate (0) in the same place for rec_vector and vector\n", + "rec_vector= (linear_vector_bgl + payload).looped().synced(vector)\n", + "rec_vector.figure()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + " -|fragment_A|13\n", + "| \\/\n", + "| /\\\n", + "| 13|fragment_B|13\n", + "| \\/\n", + "| /\\\n", + "| 13|fragment_C|13\n", + "| \\/\n", + "| /\\\n", + "| 13-\n", + "| |\n", + " --------------------------------------------" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Let's simulate a Gibson assembly\n", + "from pydna.assembly import Assembly\n", + "\n", + "fragments = [\n", + " Dseqrecord('aatgtttttccctCACTACGtgctatgcatcat', name=\"fragment_A\"),\n", + " Dseqrecord('tgctatgcatcatCTATGGAcactctaataatg', name=\"fragment_B\"),\n", + " Dseqrecord('cactctaataatgTTACATAaatgtttttccct', name=\"fragment_C\"),\n", + "]\n", + "\n", + "# limit is the min. homology length between fragments in the assembly\n", + "asm = Assembly(fragments, limit=10)\n", + "\n", + "# From the assembly object, which can generate all possible products, get a circular\n", + "product, *rest = asm.assemble_circular()\n", + "\n", + "# We can print a figure that shows the overlaps between fragments\n", + "product.figure()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o60)\n", + "\u001b[48;5;11m\u001b[0maatgtttttccctCACTACGtgctatgcatcatCTATGGAcactctaataatgTTACATA\n", + "ttacaaaaagggaGTGATGCacgatacgtagtaGATACCTgtgagattattacAATGTAT" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "# Or show the final sequence:\n", + "Dseqrecord(product).figure()" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/notebooks/sample_seq.gb b/docs/notebooks/sample_seq.gb new file mode 100644 index 00000000..bdd3b417 --- /dev/null +++ b/docs/notebooks/sample_seq.gb @@ -0,0 +1,13 @@ +LOCUS Sample_Seq 334 bp ds-DNA circular 20-AUG-2024 +DEFINITION . +FEATURES Location/Qualifiers + gene 7..51 + /label="example_gene" +ORIGIN + 1 TCCCTTATTC CTGCAGAGTA CATCAATTCT ATGAAGATAT CTTCGGATGG TGTGCCCGTT + 61 GTACATTATA TGTGGTCCAT TTGTGAATTC TTCTTCAAGC AACGTACCTC CCATGCCATA + 121 GAAGTGTCCA GTGGTGGGTA CGAAATTAGG ACACACATAC TTAGTTTCTC ACTTGATGGA + 181 TAGGGACATA CACCGCAATC CGGAATAATT TGGCTACGGG CAGTGTAACT GCAGCCAAAT + 241 CGGCGAGTGG GAACGTTGAA TCGATTCTAG GTGAAATCTT ACGATCCAGT TCGATTGATA + 301 TCTTAGACTC GAATTATTAT CGTCACAGAG GTAG +// \ No newline at end of file diff --git a/docs/rtdenv.yml b/docs/rtdenv.yml deleted file mode 100755 index d9f4930a..00000000 --- a/docs/rtdenv.yml +++ /dev/null @@ -1,12 +0,0 @@ -name: readthedocsenv -channels: -- conda-forge -- BjornFJohansson -dependencies: -- python=3.8 -- numpy -- matplotlib -- numpydoc -- ipython -- jupyter -- scipy diff --git a/objects.inv b/objects.inv new file mode 100644 index 00000000..a47f0811 Binary files 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file mode 100644 index 00000000..ab1033bd --- /dev/null +++ b/poetry.toml @@ -0,0 +1,2 @@ +[virtualenvs] +in-project = true diff --git a/pyproject.toml b/pyproject.toml index be470daa..e474b013 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,26 +35,26 @@ version = "6.0.0-a.24.post.17+b7b559bd66" [tool.poetry.dependencies] appdirs = ">=1.4.4" biopython = ">=1.80" -cai2 = {version = ">=1.0.5", optional = true} -matplotlib = {version = ">=3.4.3", optional = true} +cai2 = { version = ">=1.0.5", optional = true } +matplotlib = { version = ">=3.4.3", optional = true } networkx = ">=2.8.8" numpy = [ - {version = ">1.26", python = ">=3.9"}, - {version = "<1.24", python = "<3.9"}, + { version = ">1.26", python = ">=3.9" }, + { version = "<1.24", python = "<3.9" }, ] -pillow = {version = ">=8.4.0", optional = true} +pillow = { version = ">=8.4.0", optional = true } prettytable = ">=3.5.0" -pydivsufsort = "^0.0.14" +pydivsufsort = ">=0.0.14" pyfiglet = "0.8.post1" -pyparsing = {version = ">=2.4.7", optional = true} -pyperclip = {version = ">=1.8.2", optional = true} +pyparsing = { version = ">=2.4.7", optional = true } +pyperclip = { version = ">=1.8.2", optional = true } python = ">=3.8,<4.0" -requests = {version = ">=2.26.0", optional = true} +requests = { version = ">=2.26.0", optional = true } scipy = [ - {version = ">=1.11.3", python = ">=3.12", optional = true}, - {version = ">=1.9.3", python = "<3.12", optional = true}, + { version = ">=1.11.3", python = ">=3.12", optional = true }, + { version = ">=1.9.3", python = "<3.12", optional = true }, ] -seguid = "^0.0.5" +seguid = ">=0.0.5" [tool.poetry.extras] clipboard = ["pyperclip"] download = ["pyparsing", "requests"] @@ -62,10 +62,7 @@ express = ["cai2"] gel = ["scipy", "matplotlib", "pillow"] [build-system] build-backend = "poetry_dynamic_versioning.backend" -requires = [ - "poetry-core", - "poetry-dynamic-versioning", -] +requires = ["poetry-core", "poetry-dynamic-versioning"] [tool.poetry-dynamic-versioning] enable = true style = "semver" @@ -85,15 +82,27 @@ requests-mock = ">=1.10.0" [tool.poetry.group.docs.dependencies] numpydoc = "^1.6.0" sphinx-autobuild = "^2021.3.14" -sphinx-rtd-theme = ">=1.3,<3.0" +sphinx-rtd-theme = ">=1.3,<4.0" +nbconvert = "^7.16.4" +myst-parser = [ + { version = ">3.0.0", python = "<3.10"}, + { version = ">=4.0.0", python = ">=3.10"}, +] + +[tool.poetry.group.dev.dependencies] +autopep8 = "^2.1.0" +black = "^24.4.2" +flake8-bugbear = [{ version = ">=24.4.21", python = ">=3.8.1" }] +pre-commit = [ + { version = ">3.6", python = ">=3.9" }, + { version = "<3.6", python = "<3.9" }, +] +nbstripout = "^0.7.1" [tool.pytest.ini_options] minversion = "6.0.2" python_files = "test_*.py" -testpaths = [ - "tests", - "src", -] +testpaths = ["tests", "src"] [tool.black] include = '\.pyi?$' line-length = 119 diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 00000000..f6b6bfdb --- /dev/null +++ b/requirements.txt @@ -0,0 +1,1449 @@ +alabaster==0.7.13 ; 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--hash=sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f +typing-extensions==4.11.0 ; python_version >= "3.8" and python_version < "3.11" \ + --hash=sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0 \ + --hash=sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a +urllib3==2.2.1 ; python_version >= "3.8" and python_version < "4.0" \ + --hash=sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d \ + --hash=sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19 +virtualenv==20.26.1 ; python_version >= "3.8" and python_version < "4.0" \ + --hash=sha256:604bfdceaeece392802e6ae48e69cec49168b9c5f4a44e483963f9242eb0e78b \ + --hash=sha256:7aa9982a728ae5892558bff6a2839c00b9ed145523ece2274fad6f414690ae75 +wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "4.0" \ + --hash=sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859 \ + --hash=sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5 +wheel==0.43.0 ; python_version >= "3.8" and python_version < "4.0" \ + --hash=sha256:465ef92c69fa5c5da2d1cf8ac40559a8c940886afcef87dcf14b9470862f1d85 \ + --hash=sha256:55c570405f142630c6b9f72fe09d9b67cf1477fcf543ae5b8dcb1f5b7377da81 +zipp==3.18.1 ; python_version >= "3.8" and python_version < "3.10" \ + --hash=sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b \ + --hash=sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715 diff --git a/run_test.py b/run_test.py index 64cb527e..29224478 100755 --- a/run_test.py +++ b/run_test.py @@ -27,7 +27,7 @@ def main(): "--cov-report=xml", "--capture=no", "--durations=10", - "--import-mode=importlib", + # "--import-mode=importlib", "--nbval", "--current-env", "--doctest-modules", @@ -44,7 +44,7 @@ def main(): "--cov-report=xml", "--capture=no", "--durations=10", - "--import-mode=importlib", + # "--import-mode=importlib", "--nbval", "--current-env", "--doctest-modules", diff --git a/scripts/Add_primers_to_list.ipynb b/scripts/Add_primers_to_list.ipynb index 0ae7f292..29c4d251 100755 --- a/scripts/Add_primers_to_list.ipynb +++ b/scripts/Add_primers_to_list.ipynb @@ -2,16 +2,27 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/Users/Manu/Documents/OpenSource/pydna-peilun/pydna/.venv/lib/python3.12/site-packages/seguid/__init__.py:3: SyntaxWarning: invalid escape sequence '\\ '\n", + " \"\"\"\n", + "/Users/Manu/Documents/OpenSource/pydna-peilun/pydna/.venv/lib/python3.12/site-packages/seguid/_chksum.py:53: SyntaxWarning: invalid escape sequence '\\ '\n", + " \"\"\"SEGUID v1 checksum for linear protein or single-stranded DNA.\n" + ] + } + ], "source": [ "from pydna.parsers import parse_primers" ] }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -54,7 +65,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -63,7 +74,7 @@ "10" ] }, - "execution_count": 3, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -74,7 +85,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -83,7 +94,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -92,7 +103,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -129,7 +140,7 @@ "TACAATAGAGTTCCGAG\n" ] }, - "execution_count": 6, + "execution_count": null, "metadata": {}, "output_type": "execute_result" } @@ -149,9 +160,9 @@ "metadata": { "anaconda-cloud": {}, "kernelspec": { - "display_name": "Python [conda env:bjorn39]", + "display_name": ".venv", "language": "python", - "name": "conda-env-bjorn39-py" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -163,7 +174,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.12" + "version": "3.12.3" } }, "nbformat": 4, diff --git a/scripts/BioJSON-master/testfiles/ApE_example.gb b/scripts/BioJSON-master/testfiles/ApE_example.gb index 19f5d329..b0bce95a 100644 --- a/scripts/BioJSON-master/testfiles/ApE_example.gb +++ b/scripts/BioJSON-master/testfiles/ApE_example.gb @@ -1,11 +1,13 @@ -LOCUS New_DNA 2963 bp ds-DNA linear 13-JAN-2011 +LOCUS New_DNA 2963 bp DNA linear UNK 13-JAN-2011 DEFINITION . -ACCESSION -VERSION -SOURCE . +ACCESSION New_DNA +VERSION New_DNA +KEYWORDS . +SOURCE ORGANISM . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna ldseguid=2oLvuMsAc-fgAISC7b3XJBuejGI 2024-06-11T18:40:52 FEATURES Location/Qualifiers source complement(1..2963) /organism="Danio rerio" @@ -14,43 +16,43 @@ FEATURES Location/Qualifiers /chromosome="23" /clone="DKEY-18F23" /clone_lib="DanioKey" - /label=source:Danio rerio - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink + /label="source:Danio rerio" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" misc_feature complement(1..2963) /note="annotated region of clone" - /label=annotated region of clone - /ApEinfo_fwdcolor=#908e8e - /ApEinfo_revcolor=#908e8e + /label="annotated region of clone" + /ApEinfo_fwdcolor="#908e8e" + /ApEinfo_revcolor="#908e8e" gene 1..2963 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1 - /ApEinfo_fwdcolor=#c05e55 - /ApEinfo_revcolor=#c05e55 + /label="tuba1" + /ApEinfo_fwdcolor="#c05e55" + /ApEinfo_revcolor="#c05e55" mRNA join(1..114,1289..1511,1611..1759,1862..2963) /gene="tuba1" /locus_tag="DKEY-18F23.3-001" /product="tubulin, alpha 1" /note="match: cDNAs: Em:AF029250.1; match: ESTs: Em:CN838895.1 Em:CO924442.1" - /label=tubulin, alpha 1 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - polyA_site 2963..2963 + /label="tubulin, alpha 1" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + polyA_site 2963 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1(1) - /ApEinfo_label=tuba1 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink + /label="tuba1(1)" + /ApEinfo_label="tuba1" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" polyA_signal 2945..2950 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1(2) - /ApEinfo_label=tuba1 - /ApEinfo_fwdcolor=#c9898e - /ApEinfo_revcolor=#c9898e + /label="tuba1(2)" + /ApEinfo_label="tuba1" + /ApEinfo_fwdcolor="#c9898e" + /ApEinfo_revcolor="#c9898e" CDS join(112..114,1289..1511,1611..1759,1862..2836) /gene="tuba1" /locus_tag="DKEY-18F23.3-001" @@ -59,18 +61,18 @@ FEATURES Location/Qualifiers /product="tubulin, alpha 1" /protein_id="CAX12931.1" /db_xref="GI:220678413" - /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGG - GDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANN - YARGHYTIGKELIDLVLDRVRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD - YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD - IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI - SAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT - IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD - HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGAESVEGEDEGEEY" - /label=tubulin, alpha 1(1) - /ApEinfo_label=tubulin, alpha 1 - /ApEinfo_fwdcolor=#e8ff00 - /ApEinfo_revcolor=#e8ff00 + /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG + DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA + RGHYTIGKELIDLVLDRVRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGK + KSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP + TYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA + YHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT + IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY + AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGAESVEGEDEGEEY" + /label="tubulin, alpha 1(1)" + /ApEinfo_label="tubulin, alpha 1" + /ApEinfo_fwdcolor="#e8ff00" + /ApEinfo_revcolor="#e8ff00" ORIGIN 1 acttcattct ctcaccagac tcataaaagt cgagtgtgag agcgtttata acagaaaaac 61 cgaaggctat cctattcata attgccattc atcgaaaata cacatttgaa aatggtgagt @@ -121,5 +123,5 @@ ORIGIN 2761 ggctgccctg gagaaagatt atgaggaggt tggagctgag agtgtggaag gagaagatga 2821 gggtgaggaa tattagaaat gctgcctgct gtgtttcctg tccattgtca tatttttgtg 2881 ttctattata actttccagt tgtcaactgg ctaaaaggtc aatccttgcg acacttttag - 2941 aaaaaataaa attttgcaac atg + 2941 aaaaaataaa attttgcaac atg // diff --git a/scripts/BioJSON-master/testfiles/NCBI_example.gb b/scripts/BioJSON-master/testfiles/NCBI_example.gb index 1591304a..40f43566 100644 --- a/scripts/BioJSON-master/testfiles/NCBI_example.gb +++ b/scripts/BioJSON-master/testfiles/NCBI_example.gb @@ -7,8 +7,8 @@ KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; - Actinopterygii; Neopterygii; Teleostei; Ostariophysi; - Cypriniformes; Cyprinidae; Danio. + Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; + Cyprinidae; Danio. REFERENCE 1 (bases 1 to 1466) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., @@ -18,16 +18,16 @@ REFERENCE 1 (bases 1 to 1466) Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., - Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., - McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., - Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., - Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., - Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., - Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., - Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., - Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., - Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., - Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. + Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., + Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., + Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., + Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., + Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., + Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., + Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., + Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., + Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., + Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences @@ -50,12 +50,12 @@ COMMENT Contact: MGC help desk Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. - Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 165 Row: c Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37748472. + pydna ldseguid=_GHnVotdYSxAKX2bAUIa10ZZDhE 2024-06-11T18:40:52 FEATURES Location/Qualifiers source 1..1466 /organism="Danio rerio" @@ -88,10 +88,10 @@ FEATURES Location/Qualifiers /db_xref="GI:46329548" /db_xref="GeneID:336121" /db_xref="ZFIN:ZDB-GENE-030804-3" - /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP - TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYIS - AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" -ORIGIN + /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT + EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA + ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" +ORIGIN 1 gtggactgtt gttctgtgtg gaaatacatc tgctaaaaca gcgcgatggc tgaccagttg 61 acagaagagc agatcgccga attcaaagag gctttctcac tctttgataa agacggtgat 121 ggtacaatta ctaccaaaga gttaggtact gtcatgcgct cacttgggca gaatcccaca @@ -118,4 +118,3 @@ ORIGIN 1381 aggatagcac tgggatgaga cctctgtcaa taaaactaaa gttaattaaa gttctcttga 1441 atgacaaaaa aaaaaaaaaa aaaaaa // - diff --git a/scripts/BioJSON-master/testfiles/VectorNTI_example.gb b/scripts/BioJSON-master/testfiles/VectorNTI_example.gb index 31b8f25b..11d47649 100644 --- a/scripts/BioJSON-master/testfiles/VectorNTI_example.gb +++ b/scripts/BioJSON-master/testfiles/VectorNTI_example.gb @@ -1,3518 +1,3732 @@ -LOCUS F-GFAP-gCaMP\3-W 11512 bp DNA circular 14-JUN-2010 -SOURCE - ORGANISM +LOCUS F-GFAP-gCaMP\3-W 11512 bp DNA circular UNK 14-JUN-2010 +DEFINITION . +ACCESSION F-GFAP-gCaMP\3-W +VERSION F-GFAP-gCaMP\3-W +KEYWORDS . +SOURCE + ORGANISM + . COMMENT This file is created by Vector NTI http://www.invitrogen.com/ -COMMENT ORIGDB|GenBank -COMMENT VNTDATE|556961361| -COMMENT VNTDBDATE|556961361| -COMMENT LSOWNER| -COMMENT VNTNAME|F-GFAP-gCaMP 3-WPRE| -COMMENT VNTAUTHORNAME|Charu Ramakrishnan| -COMMENT VNTOAUTHORNAME|Feng Zhang| -COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!) -COMMENT (SXF -COMMENT (CGexDoc "F-GFAP-gCaMP 3-WPRE" 0 11512 -COMMENT (CDBMol 0 0 1 1 1 0 0 1 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList) -COMMENT (CObList) -1 "") -COMMENT (CDocSetData 1 1 0 0 0 1 "MAIN" 1 1 1 1 0 0 1 1 0 1 10 10 4294967295 50 0 -COMMENT 1 0 (CHomObj 0 0 0 3 75) -COMMENT (CWordArray 47 49 50 48 51 52 81 0 1 3 4 82 5 83 2 6 7 9 61 102 10 11 12 -COMMENT 13 14 15 16 17 18 19 84 20 85 21 22 86 87 88 23 54 62 24 89 103 104 274 -COMMENT 25 26 55 91 27 28 29 30 31 92 32 34 35 33 53 58 93 56 94 37 105 57 38 -COMMENT 36 39 40 41 42 43 95 44 59 99 96 97 45 100 46) (CWordArray) -COMMENT (CStringList "BsrGI" "AarI" "AatII" "Acc65I" "AccI" "AceIII" "AciI" -COMMENT "AclI" "AcuI" "AfeI" "AflII" "AflIII" "AgeI" "AhdI" "AleI" "AloI" -COMMENT "AluI" "AlwI" "AlwNI" "ApaBI" "ApaI" "ApaLI" "ApoI" "AscI" "AseI" -COMMENT "AsiSI" "AvaI" "AvaII" "AvrII" "BaeI" "BamHI" "BanI" "BanII" "BbeI" -COMMENT "Bbr7I" "BbsI" "BbvCI" "BbvI" "BccI" "BceAI" "BcefI" "BcgI" "BciVI" -COMMENT "BclI" "BfaI" "BfrBI" "BglI" "BglII" "BlpI" "Bme1580I" "BmgBI" "BmrI" -COMMENT "BmtI" "BplI" "BpmI" "Bpu10I" "BpuEI" "BsaAI" "BsaBI" "BsaHI" "BsaI" -COMMENT "BsaJI" "BsaWI" "BsaXI" "BscAI" "BseMII" "BseRI" "BseYI" "BsgI" "BsiEI" -COMMENT "BsiHKAI" "BsiWI" "BslI" "BsmAI" "BsmBI" "BsmFI" "BsmI" "Bsp1286I" -COMMENT "Bsp24I" "BspCNI" "BspEI" "BspHI" "BspMI" "BsrBI" "BsrDI" "BsrFI" -COMMENT "BsrI" "BssHII" "BssSI" "BstAPI" "BstBI" "BstEII" "BstF5I" "BstKTI" -COMMENT "BstNI" "BstUI" "BstXI" "BstYI" "BstZ17I" "Bsu36I" "BtgI" "BthCI" -COMMENT "BtsI" "Cac8I" "CdiI" "ChaI" "CjeI" "CjePI" "ClaI" "Csp6I" "CviAII" -COMMENT "CviJI" "DdeI" "DpnI" "DraI" "DraIII" "DrdI" "EaeI" "EagI" "EarI" -COMMENT "EciI" "Eco57MI" "EcoHI" "EcoICRI" "EcoNI" "EcoO109I" "EcoRI" "EcoRV" -COMMENT "EsaBC3I" "FalI" "FatI" "FauI" "FmuI" "Fnu4HI" "FokI" "FseI" "FspAI" -COMMENT "FspI" "GdiII" "HaeI" "HaeII" "HaeIII" "HaeIV" "HgaI" "HhaI" "Hin4I" -COMMENT "HincII" "HindIII" "HinfI" "HinP1I" "HpaI" "HpaII" "HphI" "Hpy188I" -COMMENT "Hpy188III" "Hpy8I" "Hpy99I" "HpyAV" "HpyCH4I" "HpyCH4III" "HpyCH4IV" -COMMENT "HpyCH4V" "HpyF10VI" "KasI" "KpnI" "LpnI" "MaeIII" "MboI" "MboII" -COMMENT "MfeI" "MluI" "MlyI" "MmeI" "MnlI" "MscI" "MseI" "MslI" "MspA1I" "MwoI" -COMMENT "NaeI" "NarI" "NciI" "NcoI" "NdeI" "NgoMIV" "NheI" "NlaIII" "NlaIV" -COMMENT "Nli3877I" "NotI" "NruI" "NsiI" "NspI" "PacI" "PciI" "PflMI" "PfoI" -COMMENT "PleI" "PmeI" "PmlI" "PpiI" "Ppu10I" "PpuMI" "PshAI" "PsiI" "Psp03I" -COMMENT "PspGI" "PspOMI" "PsrI" "PssI" "PstI" "PvuI" "PvuII" "RleAI" "RsaI" -COMMENT "RsrII" "SacI" "SacII" "SalI" "SanDI" "SapI" "Sau96I" "SbfI" "ScaI" -COMMENT "SciI" "ScrFI" "SelI" "SexAI" "SfaNI" "SfcI" "SfiI" "SfoI" "SgrAI" -COMMENT "SimI" "SmaI" "SmlI" "SnaBI" "SpeI" "SphI" "SrfI" "Sse232I" "Sse8647I" -COMMENT "SspD5I" "SspI" "Sth132I" "StsI" "StuI" "StyD4I" "StyI" "SwaI" "TaiI" -COMMENT "TaqI" "TaqII" "TatI" "TauI" "TfiI" "TseI" "Tsp45I" "Tsp509I" "TspDTI" -COMMENT "TspGWI" "TspRI" "Tth111I" "Tth111II" "UnbI" "UthSI" "VpaK11AI" "XbaI" -COMMENT "XcmI" "XhoI" "XmaI" "XmnI" "ZraI") (CStringList "atg" "gtg") -COMMENT (CStringList "taa" "tga" "tag") (CObList) 1 "{(0,1),2}" 0 0 "" 0 -COMMENT 4294967295 0 0 0 0 0 0 0 "MAIN" 0 0 30 1 -COMMENT (CProteinMotifSearchObject 70 20 1 1 1 1 0 0 1 0 0 0 0 0)) -COMMENT (CMolPar 0 0 0 0 0 1 11512 0 0 0 0 0 0 0 0) (CStringList) (CStringList) -COMMENT (CObList) (COAPar 25 250 50 0 6 4 3 7) (COAPar 25 250 50 0 6 4 3 7) -COMMENT (COAPar 25 250 50 0 6 4 3 7) -COMMENT (CObList -COMMENT #0=(CRSite (CStringList) "BsrGI" "tgtaca" 2 0 2 5270 0 6156 0 0 "") -COMMENT #1=(CRSite (CStringList) "AarI" "cacctgc" 12 16 1 4565 0 0 "") -COMMENT #2=(CRSite (CStringList) "AatII" "gacgtc" 6 0 7 3 0 379 0 432 0 515 0 -COMMENT 701 0 6658 0 8731 0 0 "") -COMMENT #3=(CRSite (CStringList) "Acc65I" "ggtacc" 2 0 4 4550 0 4811 0 5281 0 -COMMENT 6927 0 0 "") -COMMENT #4=(CRSite (CStringList) "AccI" "gtmkac" 3 0 7 3 0 1344 0 2491 0 4934 0 -COMMENT 6804 0 9320 0 9327 0 0 "") -COMMENT #5=(CRSite (CStringList) "AceIII" "cagctc" 14 18 20 1871 0 1919 0 3046 1 -COMMENT 3059 1 3776 0 3776 1 4327 0 5104 0 5254 1 5302 1 5335 1 5656 1 5812 -COMMENT 1 5860 1 6481 0 7285 1 8186 1 8889 1 9652 0 10892 0 0 "") -COMMENT #6=(CRSite (CStringList) "AciI" "ccgc" 2 4 95 65 0 312 0 340 0 352 0 366 -COMMENT 0 533 0 624 1 657 1 761 0 782 1 1116 1 1151 1 1197 1 1514 0 1525 1 -COMMENT 1529 0 3134 0 3221 0 3224 0 3366 1 4516 1 4651 1 4797 0 5064 0 5084 -COMMENT 1 5237 0 5240 0 5279 1 5514 0 5555 0 5622 0 5661 0 5841 1 6514 1 -COMMENT 6527 0 6540 0 6650 1 6691 1 6705 0 6707 1 6726 1 6736 0 6782 0 6790 -COMMENT 0 7194 0 7269 0 7513 0 7739 1 7763 1 7812 1 7826 1 7829 1 7857 0 -COMMENT 7884 0 8404 0 8416 0 8425 0 8437 0 8447 0 8458 0 8504 0 8719 0 8739 -COMMENT 1 8838 1 8890 1 8993 1 9085 0 9088 0 9154 1 9390 0 9493 0 9549 1 -COMMENT 9559 1 9583 0 9626 1 9633 1 9654 1 9745 0 9773 0 9900 0 9919 0 10040 -COMMENT 0 10150 1 10285 0 10294 1 10656 0 10747 0 10938 1 10984 0 11105 1 -COMMENT 11149 0 11226 0 11335 0 11434 1 11481 0 0 "") -COMMENT #7=(CRSite (CStringList) "AclI" "aacgtt" 3 0 2 10819 0 11192 0 0 "") -COMMENT #8=(CRSite (CStringList) "AcuI" "ctgaag" 23 21 11 1109 0 1360 1 1522 1 -COMMENT 3577 0 4496 1 5449 0 5493 1 5692 0 5768 0 10248 0 11260 1 0 "") -COMMENT #9=(CRSite (CStringList) "AfeI" "agcgct" 4 0 0 0 "") -COMMENT #10=(CRSite (CStringList) "AflII" "cttaag" 2 0 3 899 0 2891 0 7381 0 0 -COMMENT "") -COMMENT #11=(CRSite (CStringList) "AflIII" "acrygt" 2 0 7 232 0 2664 0 2832 0 -COMMENT 5731 0 8615 0 9059 0 9700 0 0 "") -COMMENT #12=(CRSite (CStringList) "AgeI" "accggt" 2 0 1 4814 0 0 "") -COMMENT #13=(CRSite (CStringList) "AhdI" "gacnnnnngtc" 7 0 3 3558 0 4536 0 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-COMMENT "ACGGCNNNNNNNNNNNNNN" "TGCCGNNNNNNNNNNNNNN") -COMMENT #387=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061304 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BcgI: 2 sites") 24 22 -COMMENT "CGANNNNNNTGCNNNNNNNNNNNNN" -COMMENT "GCTNNNNNNACGNNNNNNNNNNNNN") -COMMENT #388=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061336 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BciVI: 4 sites") 12 11 -COMMENT "GTATCCNNNNNNN" "CATAGGNNNNNNN") -COMMENT #389=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061368 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BclI: 4 sites") 1 5 "TGATCA" -COMMENT "ACTAGT") -COMMENT #390=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061400 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BfaI: 32 sites") 1 3 "CTAG" -COMMENT "GATC") -COMMENT #391=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061432 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BfrBI: 3 sites") 3 3 "ATGCAT" -COMMENT "TACGTA") -COMMENT #392=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061464 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BglI: 5 sites") 7 4 "GCCNNNNNGGC" -COMMENT "CGGNNNNNCCG") -COMMENT #393=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061496 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BglII: 4 sites") 1 5 "AGATCT" -COMMENT "TCTAGA") -COMMENT #394=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061528 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #395=(CGroupPar -COMMENT (CParagraph 0 (10 #48# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #396=(CLinePar -COMMENT (CParagraph 0 (1 #48# 1) 1 2 2 0 -COMMENT 191) " N1: 4993 " 1))))) -COMMENT "BlpI: 1 site") 2 5 "GCTNAGC" "CGANTCG") -COMMENT #397=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51060008 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bme1580I: 20 sites") 5 1 "GKGCMC" -COMMENT "CMCGKG") -COMMENT #398=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061560 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BmgBI: 2 sites") 3 3 "CACGTC" -COMMENT "GTGCAG") -COMMENT #399=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061736 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BmrI: 10 sites") 11 10 -COMMENT "ACTGGGNNNNNN" "TGACCCNNNNNN") -COMMENT #400=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061768 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #401=(CGroupPar -COMMENT (CParagraph 0 (10 #52# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #402=(CLinePar -COMMENT (CParagraph 0 (1 #52# 1) 1 2 2 0 -COMMENT 191) " N1: 4865 " 1))))) -COMMENT "BmtI: 1 site") 5 1 "GCTAGC" "CGATCG") -COMMENT #403=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061800 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BplI: 4 sites") 38 1 -COMMENT "NNNNNNNNNNNNNNGAGNNNNNCTCNNNNNNNNNNNNNN" -COMMENT "NNNNNNNNNNNNNNCTCNNNNNGAGNNNNNNNNNNNNNN") -COMMENT #404=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061832 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BpmI: 18 sites") 22 20 -COMMENT "CTGGAGNNNNNNNNNNNNNNNNN" "GACCTCNNNNNNNNNNNNNNNNN") -COMMENT #405=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061864 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bpu10I: 6 sites") 2 5 "CCTNAGC" -COMMENT "GGANTCG") -COMMENT #406=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061896 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BpuEI: 9 sites") 22 20 -COMMENT "CTTGAGNNNNNNNNNNNNNNNNN" "GAACTCNNNNNNNNNNNNNNNNN") -COMMENT #407=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061928 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaAI: 6 sites") 3 3 "YACGTR" -COMMENT "RTGCAY") -COMMENT #408=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061960 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #409=(CGroupPar -COMMENT (CParagraph 0 (10 #58# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #410=(CLinePar -COMMENT (CParagraph 0 (1 #58# 1) 1 2 2 0 -COMMENT 191) " N1: 4916 " 1))))) -COMMENT "BsaBI: 1 site") 5 5 "GATNNNNATC" "CTANNNNTAG") -COMMENT #411=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061992 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaHI: 12 sites") 2 4 "GRCGYC" -COMMENT "CYGCRG") -COMMENT #412=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062024 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaI: 10 sites") 7 11 -COMMENT "GGTCTCNNNNNN" "CCAGAGNNNNNN") -COMMENT #413=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062192 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaJI: 65 sites") 1 5 "CCNNGG" -COMMENT "GGNNCC") -COMMENT #414=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062224 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaWI: 7 sites") 1 5 "WCCGGW" -COMMENT "WGGCCW") -COMMENT #415=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062256 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaXI: 5 sites") 21 18 -COMMENT "ACNNNNNCTCCNNNNNNNNNNN" "TGNNNNNGAGGNNNNNNNNNNN") -COMMENT #416=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062288 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BscAI: 28 sites") 9 11 -COMMENT "GCATCNNNNNNN" "CGTAGNNNNNNN") -COMMENT #417=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062320 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseMII: 28 sites") 15 13 -COMMENT "CTCAGNNNNNNNNNNN" "GAGTCNNNNNNNNNNN") -COMMENT #418=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062352 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseRI: 15 sites") 16 14 -COMMENT "GAGGAGNNNNNNNNNNN" "CTCCTCNNNNNNNNNNN") -COMMENT #419=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062384 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseYI: 19 sites") 1 5 "CCCAGC" -COMMENT "GGGTCG") -COMMENT #420=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062416 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsgI: 9 sites") 22 20 -COMMENT "GTGCAGNNNNNNNNNNNNNNNNN" "CACGTCNNNNNNNNNNNNNNNNN") -COMMENT #421=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062448 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiEI: 8 sites") 4 2 "CGRYCG" -COMMENT "GCYRGC") -COMMENT #422=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062480 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiHKAI: 12 sites") 5 1 "GWGCWC" -COMMENT "CWCGWG") -COMMENT #423=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062648 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiWI: 0 sites") 1 5 "CGTACG" -COMMENT "GCATGC") -COMMENT #424=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062680 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BslI: 41 sites") 7 4 -COMMENT "CCNNNNNNNGG" "GGNNNNNNNCC") -COMMENT #425=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062712 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmAI: 20 sites") 6 10 -COMMENT "GTCTCNNNNNN" "CAGAGNNNNNN") -COMMENT #426=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062744 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmBI: 2 sites") 7 11 -COMMENT "CGTCTCNNNNNN" "GCAGAGNNNNNN") -COMMENT #427=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062776 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmFI: 30 sites") 15 19 -COMMENT "GGGACNNNNNNNNNNNNNNN" "CCCTGNNNNNNNNNNNNNNN") -COMMENT #428=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062808 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmI: 2 sites") 7 5 "GAATGCNN" -COMMENT "CTTACGNN") -COMMENT #429=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062840 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsp1286I: 33 sites") 5 1 "GDGCHC" -COMMENT "CHCGDG") -COMMENT #430=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062880 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsp24I: 12 sites") 24 19 -COMMENT "GACNNNNNNTGGNNNNNNNNNNNNN" -COMMENT "CTGNNNNNNACCNNNNNNNNNNNNN") -COMMENT #431=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062920 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspCNI: 28 sites") 14 12 -COMMENT "CTCAGNNNNNNNNNN" "GAGTCNNNNNNNNNN") -COMMENT #432=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062952 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #433=(CGroupPar -COMMENT (CParagraph 0 (10 #80# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #434=(CLinePar -COMMENT (CParagraph 0 (1 #80# 1) 1 2 2 0 -COMMENT 191) " N1: 7305 " 1))))) -COMMENT "BspEI: 1 site") 1 5 "TCCGGA" "AGGCCT") -COMMENT #435=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063120 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspHI: 2 sites") 1 5 "TCATGA" -COMMENT "AGTACT") -COMMENT #436=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063152 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspMI: 3 sites") 10 14 -COMMENT "ACCTGCNNNNNNNNN" "TGGACGNNNNNNNNN") -COMMENT #437=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063184 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrBI: 5 sites") 3 3 "CCGCTC" -COMMENT "GGCGAG") -COMMENT #438=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063216 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrDI: 5 sites") 8 6 "GCAATGNNN" -COMMENT "CGTTACNNN") -COMMENT #439=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063248 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrFI: 12 sites") 1 5 "RCCGGY" -COMMENT "YGGCCR") -COMMENT #440=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51046360 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrGI: 2 sites") 1 5 "TGTACA" -COMMENT "ACATGT") -COMMENT #441=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063280 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrI: 31 sites") 6 4 "ACTGGNN" -COMMENT "TGACCNN") -COMMENT #442=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063312 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BssHII: 2 sites") 1 5 "GCGCGC" -COMMENT "CGCGCG") -COMMENT #443=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063344 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BssSI: 3 sites") 1 5 "CACGAG" -COMMENT "GTGCTC") -COMMENT #444=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063376 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstAPI: 4 sites") 7 4 -COMMENT "GCANNNNNTGC" "CGTNNNNNACG") -COMMENT #445=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063408 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #446=(CGroupPar -COMMENT (CParagraph 0 (10 #90# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #447=(CLinePar -COMMENT (CParagraph 0 (1 #90# 1) 1 2 2 0 -COMMENT 191) " N1: 5185 " 1))))) -COMMENT "BstBI: 1 site") 2 4 "TTCGAA" "AAGCTT") -COMMENT #448=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063576 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #449=(CGroupPar -COMMENT (CParagraph 0 (10 #91# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #450=(CLinePar -COMMENT (CParagraph 0 (1 #91# 1) 1 2 2 0 -COMMENT 191) " N1: 3844 " 1))))) -COMMENT "BstEII: 1 site") 1 6 "GGTNACC" "CCANTGG") -COMMENT #451=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063608 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstF5I: 23 sites") 7 5 "GGATGNNN" -COMMENT "CCTACNNN") -COMMENT #452=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063640 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstKTI: 51 sites") 3 1 "GATC" -COMMENT "CTAG") -COMMENT #453=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063672 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstNI: 60 sites") 2 3 "CCWGG" -COMMENT "GGWCC") -COMMENT #454=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063704 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstUI: 31 sites") 2 2 "CGCG" -COMMENT "GCGC") -COMMENT #455=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063736 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstXI: 4 sites") 8 4 -COMMENT "CCANNNNNNTGG" "GGTNNNNNNACC") -COMMENT #456=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063768 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstYI: 22 sites") 1 5 "RGATCY" -COMMENT "YCTAGR") -COMMENT #457=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063800 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #458=(CGroupPar -COMMENT (CParagraph 0 (10 #98# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #459=(CLinePar -COMMENT (CParagraph 0 (1 #98# 1) 1 2 2 0 -COMMENT 191) " N1: 9321 " 1))))) -COMMENT "BstZ17I: 1 site") 3 3 "GTATAC" "CATATG") -COMMENT #460=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063832 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsu36I: 3 sites") 2 5 "CCTNAGG" -COMMENT "GGANTCC") -COMMENT #461=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063864 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BtgI: 10 sites") 1 5 "CCRYGG" -COMMENT "GGYRCC") -COMMENT #462=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064032 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BthCI: 68 sites") 4 1 "GCNGC" -COMMENT "CGNCG") -COMMENT #463=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064064 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BtsI: 16 sites") 8 6 "GCAGTGNNN" -COMMENT "CGTCACNNN") -COMMENT #464=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064096 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Cac8I: 58 sites") 3 3 "GCNNGC" -COMMENT "CGNNCG") -COMMENT #465=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064128 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CdiI: 20 sites") 4 4 "CATCG" -COMMENT "GTAGC") -COMMENT #466=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064160 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "ChaI: 51 sites") 5 1 "NGATCN" -COMMENT "NCTAGN") -COMMENT #467=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064192 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CjeI: 35 sites") 26 20 -COMMENT "CCANNNNNNGTNNNNNNNNNNNNNNNN" -COMMENT "GGTNNNNNNCANNNNNNNNNNNNNNNN") -COMMENT #468=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064224 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CjePI: 32 sites") 26 20 -COMMENT "CCANNNNNNNTCNNNNNNNNNNNNNNN" -COMMENT "GGTNNNNNNNAGNNNNNNNNNNNNNNN") -COMMENT #469=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064256 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "ClaI: 3 sites") 2 4 "ATCGAT" -COMMENT "TAGCTA") -COMMENT #470=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064288 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Csp6I: 27 sites") 1 3 "GTAC" -COMMENT "CATG") -COMMENT #471=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064320 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CviAII: 43 sites") 1 3 "CATG" -COMMENT "GTAC") -COMMENT #472=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064488 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CviJI: 231 sites") 2 2 "RGCY" -COMMENT "YCGR") -COMMENT #473=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064520 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DdeI: 32 sites") 1 4 "CTNAG" -COMMENT "GANTC") -COMMENT #474=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064552 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DpnI: 51 sites") 2 2 "GATC" -COMMENT "CTAG") -COMMENT #475=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064584 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DraI: 7 sites") 3 3 "TTTAAA" -COMMENT "AAATTT") -COMMENT #476=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064616 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DraIII: 4 sites") 6 3 "CACNNNGTG" -COMMENT "GTGNNNCAC") -COMMENT #477=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064648 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DrdI: 2 sites") 7 5 -COMMENT "GACNNNNNNGTC" "CTGNNNNNNCAG") -COMMENT #478=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064680 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EaeI: 10 sites") 1 5 "YGGCCR" -COMMENT "RCCGGY") -COMMENT #479=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064712 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EagI: 2 sites") 1 5 "CGGCCG" -COMMENT "GCCGGC") -COMMENT #480=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064744 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EarI: 9 sites") 7 10 -COMMENT "CTCTTCNNNNN" "GAGAAGNNNNN") -COMMENT #481=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064776 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EciI: 12 sites") 17 15 -COMMENT "GGCGGANNNNNNNNNNNN" "CCGCCTNNNNNNNNNNNN") -COMMENT #482=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064944 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Eco57MI: 29 sites") 22 20 -COMMENT "CTGRAGNNNNNNNNNNNNNNNNN" "GACYTCNNNNNNNNNNNNNNNNN") -COMMENT #483=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064976 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoHI: 19 sites") 1 6 "NCCSGGN" -COMMENT "NGGSCCN") -COMMENT #484=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065008 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoICRI: 5 sites") 3 3 "GAGCTC" -COMMENT "CTCGAG") -COMMENT #485=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065040 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoNI: 2 sites") 5 6 -COMMENT "CCTNNNNNAGG" "GGANNNNNTCC") -COMMENT #486=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065072 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoO109I: 9 sites") 2 5 "RGGNCCY" -COMMENT "YCCNGGR") -COMMENT #487=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065112 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #488=(CGroupPar -COMMENT (CParagraph 0 (10 #126# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #489=(CLinePar -COMMENT (CParagraph 0 (1 #126# 1) 1 2 2 0 -COMMENT 191) " N1: 6181 " 1))))) -COMMENT "EcoRI: 1 site") 1 5 "GAATTC" "CTTAAG") -COMMENT #490=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065152 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoRV: 3 sites") 3 3 "GATATC" -COMMENT "CTATAG") -COMMENT #491=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065184 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EsaBC3I: 26 sites") 2 2 "TCGA" -COMMENT "AGCT") -COMMENT #492=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065216 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FalI: 5 sites") 38 1 -COMMENT "NNNNNNNNNNNNNNAAGNNNNNCTTNNNNNNNNNNNNNN" -COMMENT "NNNNNNNNNNNNNNTTCNNNNNGAANNNNNNNNNNNNNN") -COMMENT #493=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065248 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FatI: 43 sites") 1 5 "NCATGN" -COMMENT "NGTACN") -COMMENT #494=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065416 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FauI: 20 sites") 9 11 -COMMENT "CCCGCNNNNNNN" "GGGCGNNNNNNN") -COMMENT #495=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065448 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FmuI: 42 sites") 4 1 "GGNCC" -COMMENT "CCNGG") -COMMENT #496=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065480 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Fnu4HI: 68 sites") 2 3 "GCNGC" -COMMENT "CGNCG") -COMMENT #497=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065512 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FokI: 23 sites") 14 18 -COMMENT "GGATGNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNN") 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-COMMENT #548=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067552 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NaeI: 6 sites") 3 3 "GCCGGC" -COMMENT "CGGCCG") -COMMENT #549=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067584 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NarI: 2 sites") 2 4 "GGCGCC" -COMMENT "CCGCGG") -COMMENT #550=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067752 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NciI: 19 sites") 2 3 "CCSGG" -COMMENT "GGSCC") -COMMENT #551=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067784 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NcoI: 6 sites") 1 5 "CCATGG" -COMMENT "GGTACC") -COMMENT #552=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067816 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #553=(CGroupPar -COMMENT (CParagraph 0 (10 #183# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #554=(CLinePar -COMMENT (CParagraph 0 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Feature (5 total)") + #335=(CFolderPar + (CGroupPar (CParagraph 29 (7 29 0) 1 1 1 0 178) + (CObjectList + #336=(CFolderPar + (CGroupPar + (CParagraph 2602 (3 #277# 0) 1 2 2 0 194) + (CObjectList + #337=(CLinePar + (CParagraph 0 (0 0) 1 2 3 0 180) + "Start: 2602 End: 4807" 1) + #338=(CLinePar + (CParagraph 0 (0 0) 1 2 3 0 180) + "Original Location Description:" 1) + #339=(CLinePar + (CParagraph 0 (0 0) 1 2 3 0 180) + " 2602..4810" 1))) "GFAP"))) + "Promoter Eukaryotic (1 total)"))) "Feature Map") + #340=(CFolderPar + (CGroupPar (CParagraph 13 (0 0) 1 1 0 0 178) + (CObjectList + #341=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046328 (8 0) 1 1 1 0 178) + (CObjectList + #342=(CGroupPar + (CParagraph 0 (10 #1# 0) 1 2 2 0 180) + (CObjectList + #343=(CLinePar + (CParagraph 0 (1 #1# 1) 1 2 2 0 191) + " N1: 4565 " 1))))) "AarI: 1 site") + 11 15 "CACCTGCNNNNNNNNN" "GTGGACGNNNNNNNNN") + #344=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046296 (8 0) 1 1 1 0 178) + (CObjectList)) "AatII: 7 sites") 5 1 "GACGTC" + "CTGCAG") + #345=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046264 (8 0) 1 1 1 0 178) + (CObjectList)) "Acc65I: 4 sites") 1 5 "GGTACC" + "CCATGG") + #346=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046232 (8 0) 1 1 1 0 178) + (CObjectList)) "AccI: 7 sites") 2 4 "GTMKAC" + "CAKMTG") + #347=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046200 (8 0) 1 1 1 0 178) + (CObjectList)) "AceIII: 20 sites") 13 17 + "CAGCTCNNNNNNNNNNNN" "GTCGAGNNNNNNNNNNNN") + #348=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046168 (8 0) 1 1 1 0 178) + (CObjectList)) "AciI: 95 sites") 1 3 "CCGC" + "GGCG") + #349=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046136 (8 0) 1 1 1 0 178) + (CObjectList)) "AclI: 2 sites") 2 4 "AACGTT" + "TTGCAA") + #350=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046104 (8 0) 1 1 1 0 178) + (CObjectList)) "AcuI: 11 sites") 22 20 + "CTGAAGNNNNNNNNNNNNNNNNN" "GACTTCNNNNNNNNNNNNNNNNN") + #351=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51045936 (8 0) 1 1 1 0 178) + (CObjectList)) "AfeI: 0 sites") 3 3 "AGCGCT" + "TCGCGA") + #352=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046792 (8 0) 1 1 1 0 178) + (CObjectList)) "AflII: 3 sites") 1 5 "CTTAAG" + "GAATTC") + #353=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046760 (8 0) 1 1 1 0 178) + (CObjectList)) "AflIII: 7 sites") 1 5 "ACRYGT" + "TGYRCA") + #354=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046592 (8 0) 1 1 1 0 178) + (CObjectList + #355=(CGroupPar + (CParagraph 0 (10 #12# 0) 1 2 2 0 180) + (CObjectList + #356=(CLinePar + (CParagraph 0 (1 #12# 1) 1 2 2 0 + 191) " N1: 4814 " 1))))) + "AgeI: 1 site") 1 5 "ACCGGT" "TGGCCA") + #357=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046560 (8 0) 1 1 1 0 178) + (CObjectList)) "AhdI: 3 sites") 6 5 "GACNNNNNGTC" + "CTGNNNNNCAG") + #358=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046392 (8 0) 1 1 1 0 178) + (CObjectList)) "AleI: 4 sites") 5 5 "CACNNNNGTG" + "GTGNNNNCAC") + #359=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060200 (8 0) 1 1 1 0 178) + (CObjectList + #360=(CGroupPar + (CParagraph 0 (10 #15# 0) 1 2 2 0 180) + (CObjectList + #361=(CLinePar + (CParagraph 0 (1 #15# 1) 1 2 2 0 + 191) + " N1: 8069 (on complementary strand)" + 1))))) "AloI: 1 site") 25 20 + "GAACNNNNNNTCCNNNNNNNNNNNNN" + "CTTGNNNNNNAGGNNNNNNNNNNNNN") + #362=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060232 (8 0) 1 1 1 0 178) + (CObjectList)) "AluI: 63 sites") 2 2 "AGCT" + "TCGA") + #363=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060264 (8 0) 1 1 1 0 178) + (CObjectList)) "AlwI: 31 sites") 9 10 + "GGATCNNNNNN" "CCTAGNNNNNN") + #364=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060296 (8 0) 1 1 1 0 178) + (CObjectList)) "AlwNI: 5 sites") 6 3 "CAGNNNCTG" + "GTCNNNGAC") + #365=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060328 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaBI: 4 sites") 8 3 + "GCANNNNNTGC" "CGTNNNNNACG") + #366=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060360 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaI: 4 sites") 5 1 "GGGCCC" + "CCCGGG") + #367=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060392 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaLI: 5 sites") 1 5 "GTGCAC" + "CACGTG") + #368=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060424 (8 0) 1 1 1 0 178) + (CObjectList)) "ApoI: 11 sites") 1 5 "RAATTY" + "YTTAAR") + #369=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060456 (8 0) 1 1 1 0 178) + (CObjectList)) "AscI: 0 sites") 2 6 "GGCGCGCC" + "CCGCGCGG") + #370=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060488 (8 0) 1 1 1 0 178) + (CObjectList)) "AseI: 6 sites") 2 4 "ATTAAT" + "TAATTA") + #371=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060520 (8 0) 1 1 1 0 178) + (CObjectList)) "AsiSI: 0 sites") 5 3 "GCGATCGC" + "CGCTAGCG") + #372=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060552 (8 0) 1 1 1 0 178) + (CObjectList)) "AvaI: 10 sites") 1 5 "CYCGRG" + "GRGCYC") + #373=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060584 (8 0) 1 1 1 0 178) + (CObjectList)) "AvaII: 14 sites") 1 4 "GGWCC" + "CCWGG") + #374=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060616 (8 0) 1 1 1 0 178) + (CObjectList)) "AvrII: 2 sites") 1 5 "CCTAGG" + "GGATCC") + #375=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060648 (8 0) 1 1 1 0 178) + (CObjectList)) "BaeI: 0 sites") 23 18 + "ACNNNNGTAYCNNNNNNNNNNNNN" + "TGNNNNCATRGNNNNNNNNNNNNN") + #376=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060680 (8 0) 1 1 1 0 178) + (CObjectList)) "BamHI: 0 sites") 1 5 "GGATCC" + "CCTAGG") + #377=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060848 (8 0) 1 1 1 0 178) + (CObjectList)) "BanI: 14 sites") 1 5 "GGYRCC" + "CCRYGG") + #378=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060880 (8 0) 1 1 1 0 178) + (CObjectList)) "BanII: 15 sites") 5 1 "GRGCYC" + "CYCGRG") + #379=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060912 (8 0) 1 1 1 0 178) + (CObjectList)) "BbeI: 2 sites") 5 1 "GGCGCC" + "CCGCGG") + #380=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060944 (8 0) 1 1 1 0 178) + (CObjectList)) "Bbr7I: 3 sites") 13 17 + "GAAGACNNNNNNNNNNNN" "CTTCTGNNNNNNNNNNNN") + #381=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060976 (8 0) 1 1 1 0 178) + (CObjectList)) "BbsI: 3 sites") 8 12 + "GAAGACNNNNNNN" "CTTCTGNNNNNNN") + #382=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061008 (8 0) 1 1 1 0 178) + (CObjectList)) "BbvCI: 3 sites") 2 5 "CCTCAGC" + "GGAGTCG") + #383=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061040 (8 0) 1 1 1 0 178) + (CObjectList)) "BbvI: 42 sites") 13 17 + "GCAGCNNNNNNNNNNNNN" "CGTCGNNNNNNNNNNNNN") + #384=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061072 (8 0) 1 1 1 0 178) + (CObjectList)) "BccI: 26 sites") 9 10 + "CCATCNNNNNN" "GGTAGNNNNNN") + #385=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061104 (8 0) 1 1 1 0 178) + (CObjectList)) "BceAI: 17 sites") 17 19 + "ACGGCNNNNNNNNNNNNNNN" "TGCCGNNNNNNNNNNNNNNN") + #386=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061136 (8 0) 1 1 1 0 178) + (CObjectList)) "BcefI: 17 sites") 17 18 + "ACGGCNNNNNNNNNNNNNN" "TGCCGNNNNNNNNNNNNNN") + #387=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061304 (8 0) 1 1 1 0 178) + (CObjectList)) "BcgI: 2 sites") 24 22 + "CGANNNNNNTGCNNNNNNNNNNNNN" + "GCTNNNNNNACGNNNNNNNNNNNNN") + #388=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061336 (8 0) 1 1 1 0 178) + (CObjectList)) "BciVI: 4 sites") 12 11 + "GTATCCNNNNNNN" "CATAGGNNNNNNN") + #389=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061368 (8 0) 1 1 1 0 178) + (CObjectList)) "BclI: 4 sites") 1 5 "TGATCA" + "ACTAGT") + #390=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061400 (8 0) 1 1 1 0 178) + (CObjectList)) "BfaI: 32 sites") 1 3 "CTAG" + "GATC") + #391=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061432 (8 0) 1 1 1 0 178) + (CObjectList)) "BfrBI: 3 sites") 3 3 "ATGCAT" + "TACGTA") + #392=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061464 (8 0) 1 1 1 0 178) + (CObjectList)) "BglI: 5 sites") 7 4 "GCCNNNNNGGC" + "CGGNNNNNCCG") + #393=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061496 (8 0) 1 1 1 0 178) + (CObjectList)) "BglII: 4 sites") 1 5 "AGATCT" + "TCTAGA") + #394=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061528 (8 0) 1 1 1 0 178) + (CObjectList + #395=(CGroupPar + (CParagraph 0 (10 #48# 0) 1 2 2 0 180) + (CObjectList + #396=(CLinePar + (CParagraph 0 (1 #48# 1) 1 2 2 0 + 191) " N1: 4993 " 1))))) + "BlpI: 1 site") 2 5 "GCTNAGC" "CGANTCG") + #397=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060008 (8 0) 1 1 1 0 178) + (CObjectList)) "Bme1580I: 20 sites") 5 1 "GKGCMC" + "CMCGKG") + #398=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061560 (8 0) 1 1 1 0 178) + (CObjectList)) "BmgBI: 2 sites") 3 3 "CACGTC" + "GTGCAG") + #399=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061736 (8 0) 1 1 1 0 178) + (CObjectList)) "BmrI: 10 sites") 11 10 + "ACTGGGNNNNNN" "TGACCCNNNNNN") + #400=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061768 (8 0) 1 1 1 0 178) + (CObjectList + #401=(CGroupPar + (CParagraph 0 (10 #52# 0) 1 2 2 0 180) + (CObjectList + #402=(CLinePar + (CParagraph 0 (1 #52# 1) 1 2 2 0 + 191) " N1: 4865 " 1))))) + "BmtI: 1 site") 5 1 "GCTAGC" "CGATCG") + #403=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061800 (8 0) 1 1 1 0 178) + (CObjectList)) "BplI: 4 sites") 38 1 + "NNNNNNNNNNNNNNGAGNNNNNCTCNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNCTCNNNNNGAGNNNNNNNNNNNNNN") + #404=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061832 (8 0) 1 1 1 0 178) + (CObjectList)) "BpmI: 18 sites") 22 20 + "CTGGAGNNNNNNNNNNNNNNNNN" "GACCTCNNNNNNNNNNNNNNNNN") + #405=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061864 (8 0) 1 1 1 0 178) + (CObjectList)) "Bpu10I: 6 sites") 2 5 "CCTNAGC" + "GGANTCG") + #406=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061896 (8 0) 1 1 1 0 178) + (CObjectList)) "BpuEI: 9 sites") 22 20 + "CTTGAGNNNNNNNNNNNNNNNNN" "GAACTCNNNNNNNNNNNNNNNNN") + #407=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061928 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaAI: 6 sites") 3 3 "YACGTR" + "RTGCAY") + #408=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061960 (8 0) 1 1 1 0 178) + (CObjectList + #409=(CGroupPar + (CParagraph 0 (10 #58# 0) 1 2 2 0 180) + (CObjectList + #410=(CLinePar + (CParagraph 0 (1 #58# 1) 1 2 2 0 + 191) " N1: 4916 " 1))))) + "BsaBI: 1 site") 5 5 "GATNNNNATC" "CTANNNNTAG") + #411=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061992 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaHI: 12 sites") 2 4 "GRCGYC" + "CYGCRG") + #412=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062024 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaI: 10 sites") 7 11 + "GGTCTCNNNNNN" "CCAGAGNNNNNN") + #413=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062192 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaJI: 65 sites") 1 5 "CCNNGG" + "GGNNCC") + #414=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062224 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaWI: 7 sites") 1 5 "WCCGGW" + "WGGCCW") + #415=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062256 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaXI: 5 sites") 21 18 + "ACNNNNNCTCCNNNNNNNNNNN" "TGNNNNNGAGGNNNNNNNNNNN") + #416=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062288 (8 0) 1 1 1 0 178) + (CObjectList)) "BscAI: 28 sites") 9 11 + "GCATCNNNNNNN" "CGTAGNNNNNNN") + #417=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062320 (8 0) 1 1 1 0 178) + (CObjectList)) "BseMII: 28 sites") 15 13 + "CTCAGNNNNNNNNNNN" "GAGTCNNNNNNNNNNN") + #418=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062352 (8 0) 1 1 1 0 178) + (CObjectList)) "BseRI: 15 sites") 16 14 + "GAGGAGNNNNNNNNNNN" "CTCCTCNNNNNNNNNNN") + #419=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062384 (8 0) 1 1 1 0 178) + (CObjectList)) "BseYI: 19 sites") 1 5 "CCCAGC" + "GGGTCG") + #420=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062416 (8 0) 1 1 1 0 178) + (CObjectList)) "BsgI: 9 sites") 22 20 + "GTGCAGNNNNNNNNNNNNNNNNN" "CACGTCNNNNNNNNNNNNNNNNN") + #421=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062448 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiEI: 8 sites") 4 2 "CGRYCG" + "GCYRGC") + #422=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062480 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiHKAI: 12 sites") 5 1 "GWGCWC" + "CWCGWG") + #423=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062648 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiWI: 0 sites") 1 5 "CGTACG" + "GCATGC") + #424=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062680 (8 0) 1 1 1 0 178) + (CObjectList)) "BslI: 41 sites") 7 4 + "CCNNNNNNNGG" "GGNNNNNNNCC") + #425=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062712 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmAI: 20 sites") 6 10 + "GTCTCNNNNNN" "CAGAGNNNNNN") + #426=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062744 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmBI: 2 sites") 7 11 + "CGTCTCNNNNNN" "GCAGAGNNNNNN") + #427=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062776 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmFI: 30 sites") 15 19 + "GGGACNNNNNNNNNNNNNNN" "CCCTGNNNNNNNNNNNNNNN") + #428=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062808 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmI: 2 sites") 7 5 "GAATGCNN" + "CTTACGNN") + #429=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062840 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsp1286I: 33 sites") 5 1 "GDGCHC" + "CHCGDG") + #430=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062880 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsp24I: 12 sites") 24 19 + "GACNNNNNNTGGNNNNNNNNNNNNN" + "CTGNNNNNNACCNNNNNNNNNNNNN") + #431=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062920 (8 0) 1 1 1 0 178) + (CObjectList)) "BspCNI: 28 sites") 14 12 + "CTCAGNNNNNNNNNN" "GAGTCNNNNNNNNNN") + #432=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062952 (8 0) 1 1 1 0 178) + (CObjectList + #433=(CGroupPar + (CParagraph 0 (10 #80# 0) 1 2 2 0 180) + (CObjectList + #434=(CLinePar + (CParagraph 0 (1 #80# 1) 1 2 2 0 + 191) " N1: 7305 " 1))))) + "BspEI: 1 site") 1 5 "TCCGGA" "AGGCCT") + #435=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063120 (8 0) 1 1 1 0 178) + (CObjectList)) "BspHI: 2 sites") 1 5 "TCATGA" + "AGTACT") + #436=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063152 (8 0) 1 1 1 0 178) + (CObjectList)) "BspMI: 3 sites") 10 14 + "ACCTGCNNNNNNNNN" "TGGACGNNNNNNNNN") + #437=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063184 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrBI: 5 sites") 3 3 "CCGCTC" + "GGCGAG") + #438=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063216 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrDI: 5 sites") 8 6 "GCAATGNNN" + "CGTTACNNN") + #439=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063248 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrFI: 12 sites") 1 5 "RCCGGY" + "YGGCCR") + #440=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046360 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrGI: 2 sites") 1 5 "TGTACA" + "ACATGT") + #441=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063280 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrI: 31 sites") 6 4 "ACTGGNN" + "TGACCNN") + #442=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063312 (8 0) 1 1 1 0 178) + (CObjectList)) "BssHII: 2 sites") 1 5 "GCGCGC" + "CGCGCG") + #443=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063344 (8 0) 1 1 1 0 178) + (CObjectList)) "BssSI: 3 sites") 1 5 "CACGAG" + "GTGCTC") + #444=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063376 (8 0) 1 1 1 0 178) + (CObjectList)) "BstAPI: 4 sites") 7 4 + "GCANNNNNTGC" "CGTNNNNNACG") + #445=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063408 (8 0) 1 1 1 0 178) + (CObjectList + #446=(CGroupPar + (CParagraph 0 (10 #90# 0) 1 2 2 0 180) + (CObjectList + #447=(CLinePar + (CParagraph 0 (1 #90# 1) 1 2 2 0 + 191) " N1: 5185 " 1))))) + "BstBI: 1 site") 2 4 "TTCGAA" "AAGCTT") + #448=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063576 (8 0) 1 1 1 0 178) + (CObjectList + #449=(CGroupPar + (CParagraph 0 (10 #91# 0) 1 2 2 0 180) + (CObjectList + #450=(CLinePar + (CParagraph 0 (1 #91# 1) 1 2 2 0 + 191) " N1: 3844 " 1))))) + "BstEII: 1 site") 1 6 "GGTNACC" "CCANTGG") + #451=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063608 (8 0) 1 1 1 0 178) + (CObjectList)) "BstF5I: 23 sites") 7 5 "GGATGNNN" + "CCTACNNN") + #452=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063640 (8 0) 1 1 1 0 178) + (CObjectList)) "BstKTI: 51 sites") 3 1 "GATC" + "CTAG") + #453=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063672 (8 0) 1 1 1 0 178) + (CObjectList)) "BstNI: 60 sites") 2 3 "CCWGG" + "GGWCC") + #454=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063704 (8 0) 1 1 1 0 178) + (CObjectList)) "BstUI: 31 sites") 2 2 "CGCG" + "GCGC") + #455=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063736 (8 0) 1 1 1 0 178) + (CObjectList)) "BstXI: 4 sites") 8 4 + "CCANNNNNNTGG" "GGTNNNNNNACC") + #456=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063768 (8 0) 1 1 1 0 178) + (CObjectList)) "BstYI: 22 sites") 1 5 "RGATCY" + "YCTAGR") + #457=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063800 (8 0) 1 1 1 0 178) + (CObjectList + #458=(CGroupPar + (CParagraph 0 (10 #98# 0) 1 2 2 0 180) + (CObjectList + #459=(CLinePar + (CParagraph 0 (1 #98# 1) 1 2 2 0 + 191) " N1: 9321 " 1))))) + "BstZ17I: 1 site") 3 3 "GTATAC" "CATATG") + #460=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063832 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsu36I: 3 sites") 2 5 "CCTNAGG" + "GGANTCC") + #461=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063864 (8 0) 1 1 1 0 178) + (CObjectList)) "BtgI: 10 sites") 1 5 "CCRYGG" + "GGYRCC") + #462=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064032 (8 0) 1 1 1 0 178) + (CObjectList)) "BthCI: 68 sites") 4 1 "GCNGC" + "CGNCG") + #463=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064064 (8 0) 1 1 1 0 178) + (CObjectList)) "BtsI: 16 sites") 8 6 "GCAGTGNNN" + "CGTCACNNN") + #464=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064096 (8 0) 1 1 1 0 178) + (CObjectList)) "Cac8I: 58 sites") 3 3 "GCNNGC" + "CGNNCG") + #465=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064128 (8 0) 1 1 1 0 178) + (CObjectList)) "CdiI: 20 sites") 4 4 "CATCG" + "GTAGC") + #466=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064160 (8 0) 1 1 1 0 178) + (CObjectList)) "ChaI: 51 sites") 5 1 "NGATCN" + "NCTAGN") + #467=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064192 (8 0) 1 1 1 0 178) + (CObjectList)) "CjeI: 35 sites") 26 20 + "CCANNNNNNGTNNNNNNNNNNNNNNNN" + "GGTNNNNNNCANNNNNNNNNNNNNNNN") + #468=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064224 (8 0) 1 1 1 0 178) + (CObjectList)) "CjePI: 32 sites") 26 20 + "CCANNNNNNNTCNNNNNNNNNNNNNNN" + "GGTNNNNNNNAGNNNNNNNNNNNNNNN") + #469=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064256 (8 0) 1 1 1 0 178) + (CObjectList)) "ClaI: 3 sites") 2 4 "ATCGAT" + "TAGCTA") + #470=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064288 (8 0) 1 1 1 0 178) + (CObjectList)) "Csp6I: 27 sites") 1 3 "GTAC" + "CATG") + #471=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064320 (8 0) 1 1 1 0 178) + (CObjectList)) "CviAII: 43 sites") 1 3 "CATG" + "GTAC") + #472=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064488 (8 0) 1 1 1 0 178) + (CObjectList)) "CviJI: 231 sites") 2 2 "RGCY" + "YCGR") + #473=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064520 (8 0) 1 1 1 0 178) + (CObjectList)) "DdeI: 32 sites") 1 4 "CTNAG" + "GANTC") + #474=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064552 (8 0) 1 1 1 0 178) + (CObjectList)) "DpnI: 51 sites") 2 2 "GATC" + "CTAG") + #475=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064584 (8 0) 1 1 1 0 178) + (CObjectList)) "DraI: 7 sites") 3 3 "TTTAAA" + "AAATTT") + #476=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064616 (8 0) 1 1 1 0 178) + (CObjectList)) "DraIII: 4 sites") 6 3 "CACNNNGTG" + "GTGNNNCAC") + #477=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064648 (8 0) 1 1 1 0 178) + (CObjectList)) "DrdI: 2 sites") 7 5 + "GACNNNNNNGTC" "CTGNNNNNNCAG") + #478=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064680 (8 0) 1 1 1 0 178) + (CObjectList)) "EaeI: 10 sites") 1 5 "YGGCCR" + "RCCGGY") + #479=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064712 (8 0) 1 1 1 0 178) + (CObjectList)) "EagI: 2 sites") 1 5 "CGGCCG" + "GCCGGC") + #480=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064744 (8 0) 1 1 1 0 178) + (CObjectList)) "EarI: 9 sites") 7 10 + "CTCTTCNNNNN" "GAGAAGNNNNN") + #481=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064776 (8 0) 1 1 1 0 178) + (CObjectList)) "EciI: 12 sites") 17 15 + "GGCGGANNNNNNNNNNNN" "CCGCCTNNNNNNNNNNNN") + #482=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064944 (8 0) 1 1 1 0 178) + (CObjectList)) "Eco57MI: 29 sites") 22 20 + "CTGRAGNNNNNNNNNNNNNNNNN" "GACYTCNNNNNNNNNNNNNNNNN") + #483=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064976 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoHI: 19 sites") 1 6 "NCCSGGN" + "NGGSCCN") + #484=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065008 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoICRI: 5 sites") 3 3 "GAGCTC" + "CTCGAG") + #485=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065040 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoNI: 2 sites") 5 6 + "CCTNNNNNAGG" "GGANNNNNTCC") + #486=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065072 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoO109I: 9 sites") 2 5 "RGGNCCY" + "YCCNGGR") + #487=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065112 (8 0) 1 1 1 0 178) + (CObjectList + #488=(CGroupPar + (CParagraph 0 (10 #126# 0) 1 2 2 0 180) + (CObjectList + #489=(CLinePar + (CParagraph 0 (1 #126# 1) 1 2 2 0 + 191) " N1: 6181 " 1))))) + "EcoRI: 1 site") 1 5 "GAATTC" "CTTAAG") + #490=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065152 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoRV: 3 sites") 3 3 "GATATC" + "CTATAG") + #491=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065184 (8 0) 1 1 1 0 178) + (CObjectList)) "EsaBC3I: 26 sites") 2 2 "TCGA" + "AGCT") + #492=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065216 (8 0) 1 1 1 0 178) + (CObjectList)) "FalI: 5 sites") 38 1 + "NNNNNNNNNNNNNNAAGNNNNNCTTNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNTTCNNNNNGAANNNNNNNNNNNNNN") + #493=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065248 (8 0) 1 1 1 0 178) + (CObjectList)) "FatI: 43 sites") 1 5 "NCATGN" + "NGTACN") + #494=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065416 (8 0) 1 1 1 0 178) + (CObjectList)) "FauI: 20 sites") 9 11 + "CCCGCNNNNNNN" "GGGCGNNNNNNN") + #495=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065448 (8 0) 1 1 1 0 178) + (CObjectList)) "FmuI: 42 sites") 4 1 "GGNCC" + "CCNGG") + #496=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065480 (8 0) 1 1 1 0 178) + (CObjectList)) "Fnu4HI: 68 sites") 2 3 "GCNGC" + "CGNCG") + #497=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065512 (8 0) 1 1 1 0 178) + (CObjectList)) "FokI: 23 sites") 14 18 + "GGATGNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNN") + #498=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065544 (8 0) 1 1 1 0 178) + (CObjectList + #499=(CGroupPar + (CParagraph 0 (10 #135# 0) 1 2 2 0 180) + (CObjectList + #500=(CLinePar + (CParagraph 0 (1 #135# 1) 1 2 2 0 + 191) " N1: 8961 " 1))))) + "FseI: 1 site") 6 2 "GGCCGGCC" "CCGGCCGG") + #501=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065576 (8 0) 1 1 1 0 178) + (CObjectList)) "FspAI: 0 sites") 4 4 "RTGCGCAY" + "YACGCGTR") + #502=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065608 (8 0) 1 1 1 0 178) + (CObjectList + #503=(CGroupPar + (CParagraph 0 (10 #137# 0) 1 2 2 0 180) + (CObjectList + #504=(CLinePar + (CParagraph 0 (1 #137# 1) 1 2 2 0 + 191) " N1: 10815 " 1))))) + "FspI: 1 site") 3 3 "TGCGCA" "ACGCGT") + #505=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065640 (8 0) 1 1 1 0 178) + (CObjectList)) "GdiII: 10 sites") 1 5 "CGGCCR" + "GCCGGY") + #506=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065672 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeI: 16 sites") 3 3 "WGGCCW" + "WCCGGW") + #507=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065704 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeII: 7 sites") 5 1 "RGCGCY" + "YCGCGR") + #508=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065872 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeIII: 56 sites") 2 2 "GGCC" + "CCGG") + #509=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065904 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeIV: 7 sites") 40 1 + "NNNNNNNNNNNNNNNGAYNNNNNRTCNNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNNCTRNNNNNYAGNNNNNNNNNNNNNNN") + #510=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065936 (8 0) 1 1 1 0 178) + (CObjectList)) "HgaI: 14 sites") 10 15 + "GACGCNNNNNNNNNNN" "CTGCGNNNNNNNNNNN") + #511=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065968 (8 0) 1 1 1 0 178) + (CObjectList)) "HhaI: 44 sites") 3 1 "GCGC" + "CGCG") + #512=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066000 (8 0) 1 1 1 0 178) + (CObjectList)) "Hin4I: 26 sites") 24 19 + "GAYNNNNNVTCNNNNNNNNNNNNNN" + "CTRNNNNNBAGNNNNNNNNNNNNNN") + #513=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066032 (8 0) 1 1 1 0 178) + (CObjectList)) "HincII: 8 sites") 3 3 "GTYRAC" + "CARYTG") + #514=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066064 (8 0) 1 1 1 0 178) + (CObjectList)) "HindIII: 5 sites") 1 5 "AAGCTT" + "TTCGAA") + #515=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066096 (8 0) 1 1 1 0 178) + (CObjectList)) "HinfI: 26 sites") 1 4 "GANTC" + "CTNAG") + #516=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066128 (8 0) 1 1 1 0 178) + (CObjectList)) "HinP1I: 44 sites") 1 3 "GCGC" + "CGCG") + #517=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066160 (8 0) 1 1 1 0 178) + (CObjectList + #518=(CGroupPar + (CParagraph 0 (10 #150# 0) 1 2 2 0 180) + (CObjectList + #519=(CLinePar + (CParagraph 0 (1 #150# 1) 1 2 2 0 + 191) " N1: 6080 " 1))))) + "HpaI: 1 site") 3 3 "GTTAAC" "CAATTG") + #520=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066328 (8 0) 1 1 1 0 178) + (CObjectList)) "HpaII: 40 sites") 1 3 "CCGG" + "GGCC") + #521=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066360 (8 0) 1 1 1 0 178) + (CObjectList)) "HphI: 25 sites") 13 12 + "GGTGANNNNNNNNN" "CCACTNNNNNNNNN") + #522=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066392 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy188I: 34 sites") 3 2 "TCNGA" + "AGNCT") + #523=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066424 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy188III: 33 sites") 2 4 + "TCNNGA" "AGNNCT") + #524=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066464 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy8I: 29 sites") 3 3 "GTNNAC" + "CANNTG") + #525=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066504 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy99I: 17 sites") 6 1 "NCGWCGN" + "NGCWGCN") + #526=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066536 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyAV: 34 sites") 11 10 + "CCTTCNNNNNNN" "GGAAGNNNNNNN") + #527=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066568 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4I: 43 sites") 3 1 "CATG" + "GTAC") + #528=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066600 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4III: 28 sites") 3 2 "ACNGT" + "TGNCA") + #529=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066640 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4IV: 26 sites") 1 3 "ACGT" + "TGCA") + #530=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066816 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4V: 47 sites") 2 2 "TGCA" + "ACGT") + #531=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066856 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyF10VI: 71 sites") 8 3 + "GCNNNNNNNGC" "CGNNNNNNNCG") + #532=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066896 (8 0) 1 1 1 0 178) + (CObjectList)) "KasI: 2 sites") 1 5 "GGCGCC" + "CCGCGG") + #533=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066936 (8 0) 1 1 1 0 178) + (CObjectList)) "KpnI: 4 sites") 5 1 "GGTACC" + "CCATGG") + #534=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066968 (8 0) 1 1 1 0 178) + (CObjectList)) "LpnI: 7 sites") 3 3 "RGCGCY" + "YCGCGR") + #535=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067000 (8 0) 1 1 1 0 178) + (CObjectList)) "MaeIII: 30 sites") 1 6 "NGTNACN" + "NCANTGN") + #536=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067032 (8 0) 1 1 1 0 178) + (CObjectList)) "MboI: 51 sites") 1 5 "NGATCN" + "NCTAGN") + #537=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067064 (8 0) 1 1 1 0 178) + (CObjectList)) "MboII: 34 sites") 13 12 + "GAAGANNNNNNNNN" "CTTCTNNNNNNNNN") + #538=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067096 (8 0) 1 1 1 0 178) + (CObjectList)) "MfeI: 2 sites") 1 5 "CAATTG" + "GTTAAC") + #539=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067128 (8 0) 1 1 1 0 178) + (CObjectList)) "MluI: 2 sites") 1 5 "ACGCGT" + "TGCGCA") + #540=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067296 (8 0) 1 1 1 0 178) + (CObjectList)) "MlyI: 16 sites") 10 10 + "GAGTCNNNNNN" "CTCAGNNNNNN") + #541=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067328 (8 0) 1 1 1 0 178) + (CObjectList)) "MmeI: 10 sites") 26 24 + "TCCRACNNNNNNNNNNNNNNNNNNNNN" + "AGGYTGNNNNNNNNNNNNNNNNNNNNN") + #542=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067360 (8 0) 1 1 1 0 178) + (CObjectList)) "MnlI: 123 sites") 11 10 + "CCTCNNNNNNNN" "GGAGNNNNNNNN") + #543=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067392 (8 0) 1 1 1 0 178) + (CObjectList)) "MscI: 2 sites") 3 3 "TGGCCA" + "ACCGGT") + #544=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067424 (8 0) 1 1 1 0 178) + (CObjectList)) "MseI: 44 sites") 1 3 "TTAA" + "AATT") + #545=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067456 (8 0) 1 1 1 0 178) + (CObjectList)) "MslI: 9 sites") 5 5 "CAYNNNNRTG" + "GTRNNNNYAC") + #546=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067488 (8 0) 1 1 1 0 178) + (CObjectList)) "MspA1I: 14 sites") 3 3 "CMGCKG" + "GKCGMC") + #547=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067520 (8 0) 1 1 1 0 178) + (CObjectList)) "MwoI: 71 sites") 7 4 + "GCNNNNNNNGC" "CGNNNNNNNCG") + #548=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067552 (8 0) 1 1 1 0 178) + (CObjectList)) "NaeI: 6 sites") 3 3 "GCCGGC" + "CGGCCG") + #549=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067584 (8 0) 1 1 1 0 178) + (CObjectList)) "NarI: 2 sites") 2 4 "GGCGCC" + "CCGCGG") + #550=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067752 (8 0) 1 1 1 0 178) + (CObjectList)) "NciI: 19 sites") 2 3 "CCSGG" + "GGSCC") + #551=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067784 (8 0) 1 1 1 0 178) + (CObjectList)) "NcoI: 6 sites") 1 5 "CCATGG" + "GGTACC") + #552=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067816 (8 0) 1 1 1 0 178) + (CObjectList + #553=(CGroupPar + (CParagraph 0 (10 #183# 0) 1 2 2 0 180) + (CObjectList + #554=(CLinePar + (CParagraph 0 (1 #183# 1) 1 2 2 0 + 191) " N1: 488 " 1))))) + "NdeI: 1 site") 2 4 "CATATG" "GTATAC") + #555=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067848 (8 0) 1 1 1 0 178) + (CObjectList)) "NgoMIV: 6 sites") 1 5 "GCCGGC" + "CGGCCG") + #556=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067880 (8 0) 1 1 1 0 178) + (CObjectList + #557=(CGroupPar + (CParagraph 0 (10 #185# 0) 1 2 2 0 180) + (CObjectList + #558=(CLinePar + (CParagraph 0 (1 #185# 1) 1 2 2 0 + 191) " N1: 4861 " 1))))) + "NheI: 1 site") 1 5 "GCTAGC" "CGATCG") + #559=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067912 (8 0) 1 1 1 0 178) + (CObjectList)) "NlaIII: 43 sites") 5 1 "NCATGN" + "NGTACN") + #560=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067944 (8 0) 1 1 1 0 178) + (CObjectList)) "NlaIV: 41 sites") 3 3 "GGNNCC" + "CCNNGG") + #561=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067976 (8 0) 1 1 1 0 178) + (CObjectList)) "Nli3877I: 10 sites") 5 1 "CYCGRG" + "GRGCYC") + #562=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068016 (8 0) 1 1 1 0 178) + (CObjectList + #563=(CGroupPar + (CParagraph 0 (10 #189# 0) 1 2 2 0 180) + (CObjectList + #564=(CLinePar + (CParagraph 0 (1 #189# 1) 1 2 2 0 + 191) " N1: 1526 " 1))))) + "NotI: 1 site") 2 6 "GCGGCCGC" "CGCCGGCG") + #565=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068056 (8 0) 1 1 1 0 178) + (CObjectList)) "NruI: 2 sites") 3 3 "TCGCGA" + "AGCGCT") + #566=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068224 (8 0) 1 1 1 0 178) + (CObjectList)) "NsiI: 3 sites") 5 1 "ATGCAT" + "TACGTA") + #567=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068256 (8 0) 1 1 1 0 178) + (CObjectList)) "NspI: 5 sites") 5 1 "RCATGY" + "YGTACR") + #568=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068288 (8 0) 1 1 1 0 178) + (CObjectList + #569=(CGroupPar + (CParagraph 0 (10 #193# 0) 1 2 2 0 180) + (CObjectList + #570=(CLinePar + (CParagraph 0 (1 #193# 1) 1 2 2 0 + 191) " N1: 2599 " 1))))) + "PacI: 1 site") 5 3 "TTAATTAA" "AATTAATT") + #571=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068320 (8 0) 1 1 1 0 178) + (CObjectList)) "PciI: 2 sites") 1 5 "ACATGT" + "TGTACA") + #572=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068352 (8 0) 1 1 1 0 178) + (CObjectList)) "PflMI: 2 sites") 7 4 + "CCANNNNNTGG" "GGTNNNNNACC") + #573=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068384 (8 0) 1 1 1 0 178) + (CObjectList)) "PfoI: 7 sites") 1 6 "TCCNGGA" + "AGGNCCT") + #574=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068416 (8 0) 1 1 1 0 178) + (CObjectList)) "PleI: 16 sites") 9 10 + "GAGTCNNNNNN" "CTCAGNNNNNN") + #575=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068448 (8 0) 1 1 1 0 178) + (CObjectList + #576=(CGroupPar + (CParagraph 0 (10 #198# 0) 1 2 2 0 180) + (CObjectList + #577=(CLinePar + (CParagraph 0 (1 #198# 1) 1 2 2 0 + 191) " N1: 7508 " 1))))) + "PmeI: 1 site") 4 4 "GTTTAAAC" "CAAATTTG") + #578=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068480 (8 0) 1 1 1 0 178) + (CObjectList)) "PmlI: 4 sites") 3 3 "CACGTG" + "GTGCAC") + #579=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068512 (8 0) 1 1 1 0 178) + (CObjectList)) "PpiI: 5 sites") 25 20 + "GAACNNNNNCTCNNNNNNNNNNNNNN" + "CTTGNNNNNGAGNNNNNNNNNNNNNN") + #580=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068680 (8 0) 1 1 1 0 178) + (CObjectList)) "Ppu10I: 3 sites") 1 5 "ATGCAT" + "TACGTA") + #581=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068712 (8 0) 1 1 1 0 178) + (CObjectList)) "PpuMI: 3 sites") 2 5 "RGGWCCY" + "YCCWGGR") + #582=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068744 (8 0) 1 1 1 0 178) + (CObjectList)) "PshAI: 0 sites") 5 5 "GACNNNNGTC" + "CTGNNNNCAG") + #583=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068776 (8 0) 1 1 1 0 178) + (CObjectList)) "PsiI: 2 sites") 3 3 "TTATAA" + "AATATT") + #584=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068808 (8 0) 1 1 1 0 178) + (CObjectList)) "Psp03I: 14 sites") 4 1 "GGWCC" + "CCWGG") + #585=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068840 (8 0) 1 1 1 0 178) + (CObjectList)) "PspGI: 60 sites") 1 6 "NCCWGGN" + "NGGWCCN") + #586=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068872 (8 0) 1 1 1 0 178) + (CObjectList)) "PspOMI: 4 sites") 1 5 "GGGCCC" + "CCCGGG") + #587=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068904 (8 0) 1 1 1 0 178) + (CObjectList)) "PsrI: 0 sites") 25 20 + "GAACNNNNNNTACNNNNNNNNNNNNN" + "CTTGNNNNNNATGNNNNNNNNNNNNN") + #588=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068936 (8 0) 1 1 1 0 178) + (CObjectList)) "PssI: 9 sites") 5 2 "RGGNCCY" + "YCCNGGR") + #589=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068968 (8 0) 1 1 1 0 178) + (CObjectList)) "PstI: 5 sites") 5 1 "CTGCAG" + "GACGTC") + #590=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069136 (8 0) 1 1 1 0 178) + (CObjectList + #591=(CGroupPar + (CParagraph 0 (10 #211# 0) 1 2 2 0 180) + (CObjectList + #592=(CLinePar + (CParagraph 0 (1 #211# 1) 1 2 2 0 + 191) " N1: 10963 " 1))))) + "PvuI: 1 site") 4 2 "CGATCG" "GCTAGC") + #593=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069168 (8 0) 1 1 1 0 178) + (CObjectList)) "PvuII: 4 sites") 3 3 "CAGCTG" + "GTCGAC") + #594=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069200 (8 0) 1 1 1 0 178) + (CObjectList)) "RleAI: 5 sites") 18 15 + "CCCACANNNNNNNNNNNNN" "GGGTGTNNNNNNNNNNNNN") + #595=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069232 (8 0) 1 1 1 0 178) + (CObjectList)) "RsaI: 27 sites") 2 2 "GTAC" + "CATG") + #596=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069264 (8 0) 1 1 1 0 178) + (CObjectList)) "RsrII: 0 sites") 2 5 "CGGWCCG" + "GCCWGGC") + #597=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069296 (8 0) 1 1 1 0 178) + (CObjectList)) "SacI: 5 sites") 5 1 "GAGCTC" + "CTCGAG") + #598=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069328 (8 0) 1 1 1 0 178) + (CObjectList + #599=(CGroupPar + (CParagraph 0 (10 #217# 0) 1 2 2 0 180) + (CObjectList + #600=(CLinePar + (CParagraph 0 (1 #217# 1) 1 2 2 0 + 191) " N1: 6708 " 1))))) + "SacII: 1 site") 4 2 "CCGCGG" "GGCGCC") + #601=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069360 (8 0) 1 1 1 0 178) + (CObjectList)) "SalI: 4 sites") 1 5 "GTCGAC" + "CAGCTG") + #602=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069392 (8 0) 1 1 1 0 178) + (CObjectList + #603=(CGroupPar + (CParagraph 0 (10 #219# 0) 1 2 2 0 180) + (CObjectList + #604=(CLinePar + (CParagraph 0 (1 #219# 1) 1 2 2 0 + 191) " N1: 2312 " 1))))) + "SanDI: 1 site") 2 5 "GGGWCCC" "CCCWGGG") + #605=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069424 (8 0) 1 1 1 0 178) + (CObjectList)) "SapI: 3 sites") 8 11 + "GCTCTTCNNNNN" "CGAGAAGNNNNN") + #606=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069592 (8 0) 1 1 1 0 178) + (CObjectList)) "Sau96I: 42 sites") 1 4 "GGNCC" + "CCNGG") + #607=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069624 (8 0) 1 1 1 0 178) + (CObjectList)) "SbfI: 0 sites") 6 2 "CCTGCAGG" + "GGACGTCC") + #608=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069656 (8 0) 1 1 1 0 178) + (CObjectList + #609=(CGroupPar + (CParagraph 0 (10 #223# 0) 1 2 2 0 180) + (CObjectList + #610=(CLinePar + (CParagraph 0 (1 #223# 1) 1 2 2 0 + 191) " N1: 11073 " 1))))) + "ScaI: 1 site") 3 3 "AGTACT" "TCATGA") + #611=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069688 (8 0) 1 1 1 0 178) + (CObjectList)) "SciI: 3 sites") 3 3 "CTCGAG" + "GAGCTC") + #612=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069720 (8 0) 1 1 1 0 178) + (CObjectList)) "ScrFI: 79 sites") 2 3 "CCNGG" + "GGNCC") + #613=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069752 (8 0) 1 1 1 0 178) + (CObjectList)) "SelI: 31 sites") 1 5 "NCGCGN" + "NGCGCN") + #614=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069784 (8 0) 1 1 1 0 178) + (CObjectList)) "SexAI: 2 sites") 1 6 "ACCWGGT" + "TGGWCCA") + #615=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069816 (8 0) 1 1 1 0 178) + (CObjectList)) "SfaNI: 28 sites") 10 14 + "GCATCNNNNNNNNNN" "CGTAGNNNNNNNNNN") + #616=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069848 (8 0) 1 1 1 0 178) + (CObjectList)) "SfcI: 14 sites") 1 5 "CTRYAG" + "GAYRTC") + #617=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069880 (8 0) 1 1 1 0 178) + (CObjectList)) "SfiI: 0 sites") 8 5 + "GGCCNNNNNGGCC" "CCGGNNNNNCCGG") + #618=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070048 (8 0) 1 1 1 0 178) + (CObjectList)) "SfoI: 2 sites") 3 3 "GGCGCC" + "CCGCGG") + #619=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070080 (8 0) 1 1 1 0 178) + (CObjectList)) "SgrAI: 2 sites") 2 6 "CRCCGGYG" + "GYGGCCRC") + #620=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070112 (8 0) 1 1 1 0 178) + (CObjectList)) "SimI: 27 sites") 2 5 "GGGTCN" + "CCCAGN") + #621=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070144 (8 0) 1 1 1 0 178) + (CObjectList)) "SmaI: 3 sites") 3 3 "CCCGGG" + "GGGCCC") + #622=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070176 (8 0) 1 1 1 0 178) + (CObjectList)) "SmlI: 15 sites") 1 5 "CTYRAG" + "GARYTC") + #623=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070208 (8 0) 1 1 1 0 178) + (CObjectList + #624=(CGroupPar + (CParagraph 0 (10 #236# 0) 1 2 2 0 180) + (CObjectList + #625=(CLinePar + (CParagraph 0 (1 #236# 1) 1 2 2 0 + 191) " N1: 594 " 1))))) + "SnaBI: 1 site") 3 3 "TACGTA" "ATGCAT") + #626=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070240 (8 0) 1 1 1 0 178) + (CObjectList + #627=(CGroupPar + (CParagraph 0 (10 #237# 0) 1 2 2 0 180) + (CObjectList + #628=(CLinePar + (CParagraph 0 (1 #237# 1) 1 2 2 0 + 191) " N1: 253 " 1))))) + "SpeI: 1 site") 1 5 "ACTAGT" "TGATCA") + #629=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070272 (8 0) 1 1 1 0 178) + (CObjectList)) "SphI: 3 sites") 5 1 "GCATGC" + "CGTACG") + #630=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070304 (8 0) 1 1 1 0 178) + (CObjectList)) "SrfI: 0 sites") 4 4 "GCCCGGGC" + "CGGGCCCG") + #631=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070336 (8 0) 1 1 1 0 178) + (CObjectList)) "Sse232I: 0 sites") 2 6 "CGCCGGCG" + "GCGGCCGC") + #632=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070504 (8 0) 1 1 1 0 178) + (CObjectList + #633=(CGroupPar + (CParagraph 0 (10 #241# 0) 1 2 2 0 180) + (CObjectList + #634=(CLinePar + (CParagraph 0 (1 #241# 1) 1 2 2 0 + 191) " N1: 3920 " 1))))) + "Sse8647I: 1 site") 2 5 "AGGWCCT" "TCCWGGA") + #635=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070544 (8 0) 1 1 1 0 178) + (CObjectList)) "SspD5I: 25 sites") 13 13 + "GGTGANNNNNNNNN" "CCACTNNNNNNNNN") + #636=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070584 (8 0) 1 1 1 0 178) + (CObjectList + #637=(CGroupPar + (CParagraph 0 (10 #243# 0) 1 2 2 0 180) + (CObjectList + #638=(CLinePar + (CParagraph 0 (1 #243# 1) 1 2 2 0 + 191) " N1: 11397 " 1))))) + "SspI: 1 site") 3 3 "AATATT" "TTATAA") + #639=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070616 (8 0) 1 1 1 0 178) + (CObjectList)) "Sth132I: 82 sites") 8 12 + "CCCGNNNNNNNNN" "GGGCNNNNNNNNN") + #640=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070648 (8 0) 1 1 1 0 178) + (CObjectList)) "StsI: 23 sites") 15 19 + "GGATGNNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNNN") + #641=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070680 (8 0) 1 1 1 0 178) + (CObjectList)) "StuI: 4 sites") 3 3 "AGGCCT" + "TCCGGA") + #642=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070712 (8 0) 1 1 1 0 178) + (CObjectList)) "StyD4I: 79 sites") 1 6 "NCCNGGN" + "NGGNCCN") + #643=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070744 (8 0) 1 1 1 0 178) + (CObjectList)) "StyI: 17 sites") 1 5 "CCWWGG" + "GGWWCC") + #644=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070776 (8 0) 1 1 1 0 178) + (CObjectList)) "SwaI: 0 sites") 4 4 "ATTTAAAT" + "TAAATTTA") + #645=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070808 (8 0) 1 1 1 0 178) + (CObjectList)) "TaiI: 26 sites") 5 1 "NACGTN" + "NTGCAN") + #646=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51070976 (8 0) 1 1 1 0 178) + (CObjectList)) "TaqI: 26 sites") 1 3 "TCGA" + "AGCT") + #647=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071008 (8 0) 1 1 1 0 178) + (CObjectList)) "TaqII: 7 sites") 17 15 + "GACCGANNNNNNNNNNNN" "CTGGCTNNNNNNNNNNNN") + #648=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071040 (8 0) 1 1 1 0 178) + (CObjectList)) "TatI: 12 sites") 1 5 "WGTACW" + "WCATGW") + #649=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071072 (8 0) 1 1 1 0 178) + (CObjectList)) "TauI: 26 sites") 4 1 "GCSGC" + "CGSCG") + #650=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071104 (8 0) 1 1 1 0 178) + (CObjectList)) "TfiI: 10 sites") 1 4 "GAWTC" + "CTWAG") + #651=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071136 (8 0) 1 1 1 0 178) + (CObjectList)) "TseI: 42 sites") 1 4 "GCWGC" + "CGWCG") + #652=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071168 (8 0) 1 1 1 0 178) + (CObjectList)) "Tsp45I: 15 sites") 1 6 "NGTSACN" + "NCASTGN") + #653=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071200 (8 0) 1 1 1 0 178) + (CObjectList)) "Tsp509I: 52 sites") 1 5 "NAATTN" + "NTTAAN") + #654=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071232 (8 0) 1 1 1 0 178) + (CObjectList)) "TspDTI: 26 sites") 16 14 + "ATGAANNNNNNNNNNNN" "TACTTNNNNNNNNNNNN") + #655=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071264 (8 0) 1 1 1 0 178) + (CObjectList)) "TspGWI: 7 sites") 16 14 + "ACGGANNNNNNNNNNNN" "TGCCTNNNNNNNNNNNN") + #656=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071432 (8 0) 1 1 1 0 178) + (CObjectList)) "TspRI: 41 sites") 10 1 + "NNNCASTGNNN" "NNNGTSACNNN") + #657=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071464 (8 0) 1 1 1 0 178) + (CObjectList)) "Tth111I: 2 sites") 4 5 + "GACNNNGTC" "CTGNNNCAG") + #658=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071496 (8 0) 1 1 1 0 178) + (CObjectList)) "Tth111II: 14 sites") 17 15 + "CAARCANNNNNNNNNNNN" "GTTYGTNNNNNNNNNNNN") + #659=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071536 (8 0) 1 1 1 0 178) + (CObjectList)) "UnbI: 42 sites") 1 6 "NGGNCCN" + "NCCNGGN") + #660=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071576 (8 0) 1 1 1 0 178) + (CObjectList)) "UthSI: 3 sites") 2 4 "CCCGGG" + "GGGCCC") + #661=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071608 (8 0) 1 1 1 0 178) + (CObjectList)) "VpaK11AI: 14 sites") 1 6 + "NGGWCCN" "NCCWGGN") + #662=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071648 (8 0) 1 1 1 0 178) + (CObjectList + #663=(CGroupPar + (CParagraph 0 (10 #267# 0) 1 2 2 0 180) + (CObjectList + #664=(CLinePar + (CParagraph 0 (1 #267# 1) 1 2 2 0 + 191) " N1: 2769 " 1))))) + "XbaI: 1 site") 1 5 "TCTAGA" "AGATCT") + #665=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071688 (8 0) 1 1 1 0 178) + (CObjectList)) "XcmI: 2 sites") 8 7 + "CCANNNNNNNNNTGG" "GGTNNNNNNNNNACC") + #666=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51071720 (8 0) 1 1 1 0 178) + (CObjectList)) "XhoI: 3 sites") 1 5 "CTCGAG" + "GAGCTC") + #667=(CRSFolderPar + (CFolderPar + (CGroupPar 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+ pydna cdseguid=fLRW6jTMqqwZCbIFOGyl1TdDbrs 2024-06-11T18:40:52 FEATURES Location/Qualifiers LTR 7317..7497 /vntifkey="19" - /label=3'LTR + /label="3'LTR" misc_feature 6194..6802 /vntifkey="21" - /label=WPRE + /label="WPRE" LTR 835..1015 /vntifkey="19" - /label=5'LTR + /label="5'LTR" misc_binding 1691..1895 /vntifkey="20" - /label=RRE + /label="RRE" promoter 2602..4807 /vntifkey="29" - /label=GFAP + /label="GFAP" misc_feature 5019..5021 /vntifkey="21" - /label=M153K + /label="M153K" misc_feature 5169..5171 /vntifkey="21" - /label=T203V + /label="T203V" misc_feature 5910..5912 /vntifkey="21" - /label=N60D + /label="N60D" misc_feature 4827..6179 /vntifkey="21" - /label=GCaMP3 -BASE COUNT 2884 a 2911 c 3098 g 2619 t + /label="GCaMP3" ORIGIN - 1 gtcgacggat cgggagatct cccgatcccc tatggtgcac tctcagtaca atctgctctg - 61 atgccgcata gttaagccag tatctgctcc ctgcttgtgt gttggaggtc gctgagtagt - 121 gcgcgagcaa aatttaagct acaacaaggc aaggcttgac cgacaattgc atgaagaatc - 181 tgcttagggt taggcgtttt gcgctgcttc gcgatgtacg ggccagatat acgcgttgac - 241 attgattatt gactagttat taatagtaat caattacggg gtcattagtt catagcccat - 301 atatggagtt ccgcgttaca taacttacgg taaatggccc gcctggctga ccgcccaacg - 361 acccccgccc attgacgtca ataatgacgt atgttcccat agtaacgcca atagggactt - 421 tccattgacg tcaatgggtg gagtatttac ggtaaactgc ccacttggca gtacatcaag - 481 tgtatcatat gccaagtacg ccccctattg acgtcaatga cggtaaatgg cccgcctggc - 541 attatgccca gtacatgacc ttatgggact ttcctacttg gcagtacatc tacgtattag - 601 tcatcgctat taccatggtg atgcggtttt ggcagtacat caatgggcgt ggatagcggt - 661 ttgactcacg gggatttcca agtctccacc ccattgacgt caatgggagt ttgttttggc - 721 accaaaatca acgggacttt ccaaaatgtc gtaacaactc cgccccattg acgcaaatgg - 781 gcggtaggcg tgtacggtgg gaggtctata taagcagcgc gttttgcctg tactgggtct - 841 ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt - 901 aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac - 961 tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagtggc - 1021 gcccgaacag ggacttgaaa gcgaaaggga aaccagagga gctctctcga cgcaggactc - 1081 ggcttgctga agcgcgcacg gcaagaggcg aggggcggcg actggtgagt acgccaaaaa - 1141 ttttgactag cggaggctag aaggagagag atgggtgcga gagcgtcagt attaagcggg - 1201 ggagaattag atcgcgatgg gaaaaaattc ggttaaggcc agggggaaag aaaaaatata - 1261 aattaaaaca tatagtatgg gcaagcaggg agctagaacg attcgcagtt aatcctggcc - 1321 tgttagaaac atcagaaggc tgtagacaaa tactgggaca gctacaacca tcccttcaga - 1381 caggatcaga agaacttaga tcattatata atacagtagc aaccctctat tgtgtgcatc - 1441 aaaggataga gataaaagac accaaggaag ctttagacaa gatagaggaa gagcaaaaca - 1501 aaagtaagac caccgcacag caagcggccg ctgatcttca gacctggagg aggagatatg - 1561 agggacaatt ggagaagtga attatataaa tataaagtag taaaaattga accattagga - 1621 gtagcaccca ccaaggcaaa gagaagagtg gtgcagagag aaaaaagagc agtgggaata - 1681 ggagctttgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcaatg - 1741 acgctgacgg tacaggccag acaattattg tctggtatag tgcagcagca gaacaatttg - 1801 ctgagggcta ttgaggcgca acagcatctg ttgcaactca cagtctgggg catcaagcag - 1861 ctccaggcaa gaatcctggc tgtggaaaga tacctaaagg atcaacagct cctggggatt - 1921 tggggttgct ctggaaaact catttgcacc actgctgtgc cttggaatgc tagttggagt - 1981 aataaatctc tggaacagat ttggaatcac acgacctgga tggagtggga cagagaaatt - 2041 aacaattaca caagcttaat acactcctta attgaagaat cgcaaaacca gcaagaaaag - 2101 aatgaacaag aattattgga attagataaa tgggcaagtt tgtggaattg gtttaacata - 2161 acaaattggc tgtggtatat aaaattattc ataatgatag taggaggctt ggtaggttta - 2221 agaatagttt ttgctgtact ttctatagtg aatagagtta ggcagggata ttcaccatta - 2281 tcgtttcaga cccacctccc aaccccgagg ggacccgaca ggcccgaagg aatagaagaa - 2341 gaaggtggag agagagacag agacagatcc attcgattag tgaacggatc ggcactgcgt - 2401 gcgccaattc tgcagacaaa tggcagtatt catccacaat tttaaaagaa aaggggggat - 2461 tggggggtac agtgcagggg aaagaatagt agacataata gcaacagaca tacaaactaa - 2521 agaattacaa aaacaaatta caaaaattca aaattttcgg gtttattaca gggacagcag - 2581 agatccagtt tggttaatta acccacctcc ctctctgtgc tgggactcac agagggagac - 2641 ctcaggaggc agtctgtcca tcacatgtcc aaatgcagag cataccctgg gctgggcgca - 2701 gtggcgcaca actgtaattc cagcactttg ggaggctgat gtggaaggat cacttgagcc - 2761 cagaagttct agaccagcct gggcaacatg gcaagaccct atctctacaa aaaaagttaa - 2821 aaaatcagcc acgtgtggtg acacacacct gtagtcccag ctattcagga ggctgaggtg - 2881 aggggatcac ttaaggctgg gaggttgagg ctgcagtgag tcgtggttgc gccactgcac - 2941 tccagcctgg gcaacagtga gaccctgtct caaaagacaa aaaaaaaaaa aaaaaaaaaa - 3001 agaacatatc ctggtgtgga gtaggggacg ctgctctgac agaggctcgg gggcctgagc - 3061 tggctctgtg agctggggag gaggcagaca gccaggcctt gtctgcaagc agacctggca - 3121 gcattgggct ggccgccccc cagggcctcc tcttcatgcc cagtgaatga ctcaccttgg - 3181 cacagacaca atgttcgggg tgggcacagt gcctgcttcc cgccgcaccc cagcccccct - 3241 caaatgcctt ccgagaagcc cattgagcag ggggcttgca ttgcacccca gcctgacagc - 3301 ctggcatctt gggataaaag cagcacagcc ccctaggggc tgcccttgct gtgtggcgcc - 3361 accggcggtg gagaacaagg ctctattcag cctgtgccca ggaaagggga tcaggggatg - 3421 cccaggcatg gacagtgggt ggcagggggg gagaggaggg ctgtctgctt cccagaagtc - 3481 caaggacaca aatgggtgag gggactgggc agggttctga ccctgtggga ccagagtgga - 3541 gggcgtagat ggacctgaag tctccaggga caacagggcc caggtctcag gctcctagtt - 3601 gggcccagtg gctccagcgt ttccaaaccc atccatcccc agaggttctt cccatctctc - 3661 caggctgatg tgtgggaact cgaggaaata aatctccagt gggagacgga ggggtggcca - 3721 gggaaacggg gcgctgcagg aataaagacg agccagcaca gccagctcat gtgtaacggc - 3781 tttgtggagc tgtcaaggcc tggtctctgg gagagaggca cagggaggcc agacaaggaa - 3841 ggggtgacct ggagggacag atccaggggc taaagtcctg ataaggcaag agagtgccgg - 3901 ccccctcttg ccctatcagg acctccactg ccacatagag gccatgattg acccttagac - 3961 aaagggctgg tgtccaatcc cagcccccag ccccagaact ccagggaatg aatgggcaga - 4021 gagcaggaat gtgggacatc tgtgttcaag ggaaggactc caggagtctg ctgggaatga - 4081 ggcctagtag gaaatgaggt ggcccttgag ggtacagaac aggttcattc ttcgccaaat - 4141 tcccagcacc ttgcaggcac ttacagctga gtgagataat gcctgggtta tgaaatcaaa - 4201 aagttggaaa gcaggtcaga ggtcatctgg tacagccctt ccttcccttt tttttttttt - 4261 ttttttgtga gacaaggtct ctctctgttg cccaggctgg agtggcgcaa acacagctca - 4321 ctgcagcctc aacctactgg gctcaagcaa tcctccagcc tcagcctccc aaagtgctgg - 4381 gattacaagc atgagccacc ccactcagcc ctttccttcc tttttaattg atgcataata - 4441 attgtaagta ttcatcatgg tccaaccaac cctttcttga cccaccttcc tagagagagg - 4501 gtcctcttgc ttcagcggtc agggccccag acccatggtc tggctccagg taccacctgc - 4561 ctcatgcagg agttggcgtg cccaggaagc tctgcctctg ggcacagtga cctcagtggg - 4621 gtgaggggag ctctccccat agctgggctg cggcccaacc ccaccccctc aggctatgcc - 4681 agggggtgtt gccaggggca cccgggcatc gccagtctag cccactcctt cataaagccc - 4741 tcgcatccca ggagcgagca gagccagagc aggttggaga ggagacgcat cacctccgct - 4801 gctcgccggg gtaccggtag gccaccatgg gttctcatca tcatcatcat catggtatgg - 4861 ctagcatgac tggtggacag caaatgggtc gggatctgta cgacgatgac gataaggatc - 4921 tcgccaccat ggtcgactca tcacgtcgta agtggaataa gacaggtcac gcagtcagag - 4981 ctataggtcg gctgagctca ctcgagaacg tctatatcaa ggccgacaag cagaagaacg - 5041 gcatcaaggc gaacttcaag atccgccaca acatcgagga cggcggcgtg cagctcgcct - 5101 accactacca gcagaacacc cccatcggcg acggccccgt gctgctgccc gacaaccact - 5161 acctgagcgt gcagtccaaa ctttcgaaag accccaacga gaagcgcgat cacatggtcc - 5221 tgctggagtt cgtgaccgcc gccgggatca ctctcggcat ggacgagctg tacaagggcg - 5281 gtaccggagg gagcatggtg agcaagggcg aggagctgtt caccggggtg gtgcccatcc - 5341 tggtcgagct ggacggcgac gtaaacggcc acaagttcag cgtgtccggc gagggtgagg - 5401 gcgatgccac ctacggcaag ctgaccctga agttcatctg caccaccggc aagctgcccg - 5461 tgccctggcc caccctcgtg accaccctga cctacggcgt gcagtgcttc agccgctacc - 5521 ccgaccacat gaagcagcac gacttcttca agtccgccat gcccgaaggc tacatccagg - 5581 agcgcaccat cttcttcaag gacgacggca actacaagac ccgcgccgag gtgaagttcg - 5641 agggcgacac cctggtgaac cgcatcgagc tgaagggcat cgacttcaag gaggacggca - 5701 acatcctggg gcacaagctg gagtacaaca cgcgtgacca actgactgaa gagcagatcg - 5761 cagaatttaa agaggctttc tccctatttg acaaggacgg ggatgggaca ataacaacca - 5821 aggagctggg gacggtgatg cggtctctgg ggcagaaccc cacagaagca gagctgcagg - 5881 acatgatcaa tgaagtagat gccgacggtg acggcacaat cgacttccct gagttcctga - 5941 caatgatggc aagaaaaatg aaagacacag acagtgaaga agaaattaga gaagcgttcc - 6001 gtgtgtttga taaggatggc aatggctaca tcagtgcagc agagcttcgc cacgtgatga - 6061 caaaccttgg agagaagtta acagatgaag aggttgatga aatgatcagg gaagcagaca - 6121 tcgatgggga tggtcaggta aactacgaag agtttgtaca aatgatgaca gcgaagtaag - 6181 aattcgatat caagcttatc gataatcaac ctctggatta caaaatttgt gaaagattga - 6241 ctggtattct taactatgtt gctcctttta cgctatgtgg atacgctgct ttaatgcctt - 6301 tgtatcatgc tattgcttcc cgtatggctt tcattttctc ctccttgtat aaatcctggt - 6361 tgctgtctct ttatgaggag ttgtggcccg ttgtcaggca acgtggcgtg gtgtgcactg - 6421 tgtttgctga cgcaaccccc actggttggg gcattgccac cacctgtcag ctcctttccg - 6481 ggactttcgc tttccccctc cctattgcca cggcggaact catcgccgcc tgccttgccc - 6541 gctgctggac aggggctcgg ctgttgggca ctgacaattc cgtggtgttg tcggggaaat - 6601 catcgtcctt tccttggctg ctcgcctgtg ttgccacctg gattctgcgc gggacgtcct - 6661 tctgctacgt cccttcggcc ctcaatccag cggaccttcc ttcccgcggc ctgctgccgg - 6721 ctctgcggcc tcttccgcgt cttcgccttc gccctcagac gagtcggatc tccctttggg - 6781 ccgcctcccc gcatcgatac cgtcgacctc gagacctaga aaaacatgga gcaatcacaa - 6841 gtagcaatac agcagctacc aatgctgatt gtgcctggct agaagcacaa gaggaggagg - 6901 aggtgggttt tccagtcaca cctcaggtac ctttaagacc aatgacttac aaggcagctg - 6961 tagatcttag ccacttttta aaagaaaagg ggggactgga agggctaatt cactcccaac - 7021 gaagacaaga tatccttgat ctgtggatct accacacaca aggctacttc cctgattggc - 7081 agaactacac accagggcca gggatcagat atccactgac ctttggatgg tgctacaagc - 7141 tagtaccagt tgagcaagag aaggtagaag aagccaatga aggagagaac acccgcttgt - 7201 tacaccctgt gagcctgcat gggatggatg acccggagag agaagtatta gagtggaggt - 7261 ttgacagccg cctagcattt catcacatgg cccgagagct gcatccggac tgtactgggt - 7321 ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc - 7381 ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg - 7441 actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagcaggg - 7501 cccgtttaaa cccgctgatc agcctcgact gtgccttcta gttgccagcc atctgttgtt - 7561 tgcccctccc ccgtgccttc cttgaccctg gaaggtgcca ctcccactgt cctttcctaa - 7621 taaaatgagg aaattgcatc gcattgtctg agtaggtgtc attctattct ggggggtggg - 7681 gtggggcagg acagcaaggg ggaggattgg gaagacaata gcaggcatgc tggggatgcg - 7741 gtgggctcta tggcttctga ggcggaaaga accagctggg gctctagggg gtatccccac - 7801 gcgccctgta gcggcgcatt aagcgcggcg ggtgtggtgg ttacgcgcag cgtgaccgct - 7861 acacttgcca gcgccctagc gcccgctcct ttcgctttct tcccttcctt tctcgccacg - 7921 ttcgccggct ttccccgtca agctctaaat cgggggctcc ctttagggtt ccgatttagt - 7981 gctttacggc acctcgaccc caaaaaactt gattagggtg atggttcacg tagtgggcca - 8041 tcgccctgat agacggtttt tcgccctttg acgttggagt ccacgttctt taatagtgga - 8101 ctcttgttcc aaactggaac aacactcaac cctatctcgg tctattcttt tgatttataa - 8161 gggattttgc cgatttcggc ctattggtta aaaaatgagc tgatttaaca aaaatttaac - 8221 gcgaattaat tctgtggaat gtgtgtcagt tagggtgtgg aaagtcccca ggctccccag - 8281 caggcagaag tatgcaaagc atgcatctca attagtcagc aaccaggtgt ggaaagtccc - 8341 caggctcccc agcaggcaga agtatgcaaa gcatgcatct caattagtca gcaaccatag - 8401 tcccgcccct aactccgccc atcccgcccc taactccgcc cagttccgcc cattctccgc - 8461 cccatggctg actaattttt tttatttatg cagaggccga ggccgcctct gcctctgagc - 8521 tattccagaa gtagtgagga ggcttttttg gaggcctagg cttttgcaaa aagctcccgg - 8581 gagcttgtat atccattttc ggatctgatc agcacgtgtt gacaattaat catcggcata - 8641 gtatatcggc atagtataat acgacaaggt gaggaactaa accatggcca agttgaccag - 8701 tgccgttccg gtgctcaccg cgcgcgacgt cgccggagcg gtcgagttct ggaccgaccg - 8761 gctcgggttc tcccgggact tcgtggagga cgacttcgcc ggtgtggtcc gggacgacgt - 8821 gaccctgttc atcagcgcgg tccaggacca ggtggtgccg gacaacaccc tggcctgggt - 8881 gtgggtgcgc ggcctggacg agctgtacgc cgagtggtcg gaggtcgtgt ccacgaactt - 8941 ccgggacgcc tccgggccgg ccatgaccga gatcggcgag cagccgtggg ggcgggagtt - 9001 cgccctgcgc gacccggccg gcaactgcgt gcacttcgtg gccgaggagc aggactgaca - 9061 cgtgctacga gatttcgatt ccaccgccgc cttctatgaa aggttgggct tcggaatcgt - 9121 tttccgggac gccggctgga tgatcctcca gcgcggggat ctcatgctgg agttcttcgc - 9181 ccaccccaac ttgtttattg cagcttataa tggttacaaa taaagcaata gcatcacaaa - 9241 tttcacaaat aaagcatttt tttcactgca ttctagttgt ggtttgtcca aactcatcaa - 9301 tgtatcttat catgtctgta taccgtcgac ctctagctag agcttggcgt aatcatggtc - 9361 atagctgttt cctgtgtgaa attgttatcc gctcacaatt ccacacaaca tacgagccgg - 9421 aagcataaag tgtaaagcct ggggtgccta atgagtgagc taactcacat taattgcgtt - 9481 gcgctcactg cccgctttcc agtcgggaaa cctgtcgtgc cagctgcatt aatgaatcgg - 9541 ccaacgcgcg gggagaggcg gtttgcgtat tgggcgctct tccgcttcct cgctcactga - 9601 ctcgctgcgc tcggtcgttc ggctgcggcg agcggtatca gctcactcaa aggcggtaat - 9661 acggttatcc acagaatcag gggataacgc aggaaagaac atgtgagcaa aaggccagca - 9721 aaaggccagg aaccgtaaaa aggccgcgtt gctggcgttt ttccataggc tccgcccccc - 9781 tgacgagcat cacaaaaatc gacgctcaag tcagaggtgg cgaaacccga caggactata - 9841 aagataccag gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc - 9901 gcttaccgga tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc - 9961 acgctgtagg tatctcagtt cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga - 10021 accccccgtt cagcccgacc gctgcgcctt atccggtaac tatcgtcttg agtccaaccc - 10081 ggtaagacac gacttatcgc cactggcagc agccactggt aacaggatta gcagagcgag - 10141 gtatgtaggc ggtgctacag agttcttgaa gtggtggcct aactacggct acactagaag - 10201 aacagtattt ggtatctgcg ctctgctgaa gccagttacc ttcggaaaaa gagttggtag - 10261 ctcttgatcc ggcaaacaaa ccaccgctgg tagcggtggt ttttttgttt gcaagcagca - 10321 gattacgcgc agaaaaaaag gatctcaaga agatcctttg atcttttcta cggggtctga - 10381 cgctcagtgg aacgaaaact cacgttaagg gattttggtc atgagattat caaaaaggat - 10441 cttcacctag atccttttaa attaaaaatg aagttttaaa tcaatctaaa gtatatatga - 10501 gtaaacttgg tctgacagtt accaatgctt aatcagtgag gcacctatct cagcgatctg - 10561 tctatttcgt tcatccatag ttgcctgact ccccgtcgtg tagataacta cgatacggga - 10621 gggcttacca tctggcccca gtgctgcaat gataccgcga gacccacgct caccggctcc - 10681 agatttatca gcaataaacc agccagccgg aagggccgag cgcagaagtg gtcctgcaac - 10741 tttatccgcc tccatccagt ctattaattg ttgccgggaa gctagagtaa gtagttcgcc - 10801 agttaatagt ttgcgcaacg ttgttgccat tgctacaggc atcgtggtgt cacgctcgtc - 10861 gtttggtatg gcttcattca gctccggttc ccaacgatca aggcgagtta catgatcccc - 10921 catgttgtgc aaaaaagcgg ttagctcctt cggtcctccg atcgttgtca gaagtaagtt - 10981 ggccgcagtg ttatcactca tggttatggc agcactgcat aattctctta ctgtcatgcc - 11041 atccgtaaga tgcttttctg tgactggtga gtactcaacc aagtcattct gagaatagtg - 11101 tatgcggcga ccgagttgct cttgcccggc gtcaatacgg gataataccg cgccacatag - 11161 cagaacttta aaagtgctca tcattggaaa acgttcttcg gggcgaaaac tctcaaggat - 11221 cttaccgctg ttgagatcca gttcgatgta acccactcgt gcacccaact gatcttcagc - 11281 atcttttact ttcaccagcg tttctgggtg agcaaaaaca ggaaggcaaa atgccgcaaa - 11341 aaagggaata agggcgacac ggaaatgttg aatactcata ctcttccttt ttcaatatta - 11401 ttgaagcatt tatcagggtt attgtctcat gagcggatac atatttgaat gtatttagaa - 11461 aaataaacaa ataggggttc cgcgcacatt tccccgaaaa gtgccacctg ac + 1 gtcgacggat cgggagatct cccgatcccc tatggtgcac tctcagtaca atctgctctg + 61 atgccgcata gttaagccag tatctgctcc ctgcttgtgt gttggaggtc gctgagtagt + 121 gcgcgagcaa aatttaagct acaacaaggc aaggcttgac cgacaattgc atgaagaatc + 181 tgcttagggt taggcgtttt gcgctgcttc gcgatgtacg ggccagatat acgcgttgac + 241 attgattatt gactagttat taatagtaat caattacggg gtcattagtt catagcccat + 301 atatggagtt ccgcgttaca taacttacgg taaatggccc gcctggctga ccgcccaacg + 361 acccccgccc attgacgtca ataatgacgt atgttcccat agtaacgcca atagggactt + 421 tccattgacg tcaatgggtg gagtatttac ggtaaactgc ccacttggca gtacatcaag + 481 tgtatcatat gccaagtacg ccccctattg acgtcaatga cggtaaatgg cccgcctggc + 541 attatgccca gtacatgacc ttatgggact ttcctacttg gcagtacatc tacgtattag + 601 tcatcgctat taccatggtg atgcggtttt ggcagtacat caatgggcgt ggatagcggt + 661 ttgactcacg gggatttcca agtctccacc ccattgacgt caatgggagt ttgttttggc + 721 accaaaatca acgggacttt ccaaaatgtc gtaacaactc cgccccattg acgcaaatgg + 781 gcggtaggcg tgtacggtgg gaggtctata taagcagcgc gttttgcctg tactgggtct + 841 ctctggttag accagatctg agcctgggag ctctctggct aactagggaa cccactgctt + 901 aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt gtgcccgtct gttgtgtgac + 961 tctggtaact agagatccct cagacccttt tagtcagtgt ggaaaatctc tagcagtggc + 1021 gcccgaacag ggacttgaaa gcgaaaggga aaccagagga gctctctcga cgcaggactc + 1081 ggcttgctga agcgcgcacg gcaagaggcg aggggcggcg actggtgagt acgccaaaaa + 1141 ttttgactag cggaggctag aaggagagag atgggtgcga gagcgtcagt attaagcggg + 1201 ggagaattag atcgcgatgg gaaaaaattc ggttaaggcc agggggaaag aaaaaatata + 1261 aattaaaaca tatagtatgg gcaagcaggg agctagaacg attcgcagtt aatcctggcc + 1321 tgttagaaac atcagaaggc tgtagacaaa tactgggaca gctacaacca tcccttcaga + 1381 caggatcaga agaacttaga tcattatata atacagtagc aaccctctat tgtgtgcatc + 1441 aaaggataga gataaaagac accaaggaag ctttagacaa gatagaggaa gagcaaaaca + 1501 aaagtaagac caccgcacag caagcggccg ctgatcttca gacctggagg aggagatatg + 1561 agggacaatt ggagaagtga attatataaa tataaagtag taaaaattga accattagga + 1621 gtagcaccca ccaaggcaaa gagaagagtg gtgcagagag aaaaaagagc agtgggaata + 1681 ggagctttgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcaatg + 1741 acgctgacgg tacaggccag acaattattg tctggtatag tgcagcagca gaacaatttg + 1801 ctgagggcta ttgaggcgca acagcatctg ttgcaactca cagtctgggg catcaagcag + 1861 ctccaggcaa gaatcctggc tgtggaaaga tacctaaagg atcaacagct cctggggatt + 1921 tggggttgct ctggaaaact catttgcacc actgctgtgc cttggaatgc tagttggagt + 1981 aataaatctc tggaacagat ttggaatcac acgacctgga tggagtggga cagagaaatt + 2041 aacaattaca caagcttaat acactcctta attgaagaat cgcaaaacca gcaagaaaag + 2101 aatgaacaag aattattgga attagataaa tgggcaagtt tgtggaattg gtttaacata + 2161 acaaattggc tgtggtatat aaaattattc ataatgatag taggaggctt ggtaggttta + 2221 agaatagttt ttgctgtact ttctatagtg aatagagtta ggcagggata ttcaccatta + 2281 tcgtttcaga cccacctccc aaccccgagg ggacccgaca ggcccgaagg aatagaagaa + 2341 gaaggtggag agagagacag agacagatcc attcgattag tgaacggatc ggcactgcgt + 2401 gcgccaattc tgcagacaaa tggcagtatt catccacaat tttaaaagaa aaggggggat + 2461 tggggggtac agtgcagggg aaagaatagt agacataata gcaacagaca tacaaactaa + 2521 agaattacaa aaacaaatta caaaaattca aaattttcgg gtttattaca gggacagcag + 2581 agatccagtt tggttaatta acccacctcc ctctctgtgc tgggactcac agagggagac + 2641 ctcaggaggc agtctgtcca tcacatgtcc aaatgcagag cataccctgg gctgggcgca + 2701 gtggcgcaca actgtaattc cagcactttg ggaggctgat gtggaaggat cacttgagcc + 2761 cagaagttct agaccagcct gggcaacatg gcaagaccct atctctacaa aaaaagttaa + 2821 aaaatcagcc acgtgtggtg acacacacct gtagtcccag ctattcagga ggctgaggtg + 2881 aggggatcac ttaaggctgg gaggttgagg ctgcagtgag tcgtggttgc gccactgcac + 2941 tccagcctgg gcaacagtga gaccctgtct caaaagacaa aaaaaaaaaa aaaaaaaaaa + 3001 agaacatatc ctggtgtgga gtaggggacg ctgctctgac agaggctcgg gggcctgagc + 3061 tggctctgtg agctggggag gaggcagaca gccaggcctt gtctgcaagc agacctggca + 3121 gcattgggct ggccgccccc cagggcctcc tcttcatgcc cagtgaatga ctcaccttgg + 3181 cacagacaca atgttcgggg tgggcacagt gcctgcttcc cgccgcaccc cagcccccct + 3241 caaatgcctt ccgagaagcc cattgagcag ggggcttgca ttgcacccca gcctgacagc + 3301 ctggcatctt gggataaaag cagcacagcc ccctaggggc tgcccttgct gtgtggcgcc + 3361 accggcggtg gagaacaagg ctctattcag cctgtgccca ggaaagggga tcaggggatg + 3421 cccaggcatg gacagtgggt ggcagggggg gagaggaggg ctgtctgctt cccagaagtc + 3481 caaggacaca aatgggtgag gggactgggc agggttctga ccctgtggga ccagagtgga + 3541 gggcgtagat ggacctgaag tctccaggga caacagggcc caggtctcag gctcctagtt + 3601 gggcccagtg gctccagcgt ttccaaaccc atccatcccc agaggttctt cccatctctc + 3661 caggctgatg tgtgggaact cgaggaaata aatctccagt gggagacgga ggggtggcca + 3721 gggaaacggg gcgctgcagg aataaagacg agccagcaca gccagctcat gtgtaacggc + 3781 tttgtggagc tgtcaaggcc tggtctctgg gagagaggca cagggaggcc agacaaggaa + 3841 ggggtgacct ggagggacag atccaggggc taaagtcctg ataaggcaag agagtgccgg + 3901 ccccctcttg ccctatcagg acctccactg ccacatagag gccatgattg acccttagac + 3961 aaagggctgg tgtccaatcc cagcccccag ccccagaact ccagggaatg aatgggcaga + 4021 gagcaggaat gtgggacatc tgtgttcaag ggaaggactc caggagtctg ctgggaatga + 4081 ggcctagtag gaaatgaggt ggcccttgag ggtacagaac aggttcattc ttcgccaaat + 4141 tcccagcacc ttgcaggcac ttacagctga gtgagataat gcctgggtta tgaaatcaaa + 4201 aagttggaaa gcaggtcaga ggtcatctgg tacagccctt ccttcccttt tttttttttt + 4261 ttttttgtga gacaaggtct ctctctgttg cccaggctgg agtggcgcaa acacagctca + 4321 ctgcagcctc aacctactgg gctcaagcaa tcctccagcc tcagcctccc aaagtgctgg + 4381 gattacaagc atgagccacc ccactcagcc ctttccttcc tttttaattg atgcataata + 4441 attgtaagta ttcatcatgg tccaaccaac cctttcttga cccaccttcc tagagagagg + 4501 gtcctcttgc ttcagcggtc agggccccag acccatggtc tggctccagg taccacctgc + 4561 ctcatgcagg agttggcgtg cccaggaagc tctgcctctg ggcacagtga cctcagtggg + 4621 gtgaggggag ctctccccat agctgggctg cggcccaacc ccaccccctc aggctatgcc + 4681 agggggtgtt gccaggggca cccgggcatc gccagtctag cccactcctt cataaagccc + 4741 tcgcatccca ggagcgagca gagccagagc aggttggaga ggagacgcat cacctccgct + 4801 gctcgccggg gtaccggtag gccaccatgg gttctcatca tcatcatcat catggtatgg + 4861 ctagcatgac tggtggacag caaatgggtc gggatctgta cgacgatgac gataaggatc + 4921 tcgccaccat ggtcgactca tcacgtcgta agtggaataa gacaggtcac gcagtcagag + 4981 ctataggtcg gctgagctca ctcgagaacg tctatatcaa ggccgacaag cagaagaacg + 5041 gcatcaaggc gaacttcaag atccgccaca acatcgagga cggcggcgtg cagctcgcct + 5101 accactacca gcagaacacc cccatcggcg acggccccgt gctgctgccc gacaaccact + 5161 acctgagcgt gcagtccaaa ctttcgaaag accccaacga gaagcgcgat cacatggtcc + 5221 tgctggagtt cgtgaccgcc gccgggatca ctctcggcat ggacgagctg tacaagggcg + 5281 gtaccggagg gagcatggtg agcaagggcg aggagctgtt caccggggtg gtgcccatcc + 5341 tggtcgagct ggacggcgac gtaaacggcc acaagttcag cgtgtccggc gagggtgagg + 5401 gcgatgccac ctacggcaag ctgaccctga agttcatctg caccaccggc aagctgcccg + 5461 tgccctggcc caccctcgtg accaccctga cctacggcgt gcagtgcttc agccgctacc + 5521 ccgaccacat gaagcagcac gacttcttca agtccgccat gcccgaaggc tacatccagg + 5581 agcgcaccat cttcttcaag gacgacggca actacaagac ccgcgccgag gtgaagttcg + 5641 agggcgacac cctggtgaac cgcatcgagc tgaagggcat cgacttcaag gaggacggca + 5701 acatcctggg gcacaagctg gagtacaaca cgcgtgacca actgactgaa gagcagatcg + 5761 cagaatttaa agaggctttc tccctatttg acaaggacgg ggatgggaca ataacaacca + 5821 aggagctggg gacggtgatg cggtctctgg ggcagaaccc cacagaagca gagctgcagg + 5881 acatgatcaa tgaagtagat gccgacggtg acggcacaat cgacttccct gagttcctga + 5941 caatgatggc aagaaaaatg aaagacacag acagtgaaga agaaattaga gaagcgttcc + 6001 gtgtgtttga taaggatggc aatggctaca tcagtgcagc agagcttcgc cacgtgatga + 6061 caaaccttgg agagaagtta acagatgaag aggttgatga aatgatcagg gaagcagaca + 6121 tcgatgggga tggtcaggta aactacgaag agtttgtaca aatgatgaca gcgaagtaag + 6181 aattcgatat caagcttatc gataatcaac ctctggatta caaaatttgt gaaagattga + 6241 ctggtattct taactatgtt gctcctttta cgctatgtgg atacgctgct ttaatgcctt + 6301 tgtatcatgc tattgcttcc cgtatggctt tcattttctc ctccttgtat aaatcctggt + 6361 tgctgtctct ttatgaggag ttgtggcccg ttgtcaggca acgtggcgtg gtgtgcactg + 6421 tgtttgctga cgcaaccccc actggttggg gcattgccac cacctgtcag ctcctttccg + 6481 ggactttcgc tttccccctc cctattgcca cggcggaact catcgccgcc tgccttgccc + 6541 gctgctggac aggggctcgg ctgttgggca ctgacaattc cgtggtgttg tcggggaaat + 6601 catcgtcctt tccttggctg ctcgcctgtg ttgccacctg gattctgcgc gggacgtcct + 6661 tctgctacgt cccttcggcc ctcaatccag cggaccttcc ttcccgcggc ctgctgccgg + 6721 ctctgcggcc tcttccgcgt cttcgccttc gccctcagac gagtcggatc tccctttggg + 6781 ccgcctcccc gcatcgatac cgtcgacctc gagacctaga aaaacatgga gcaatcacaa + 6841 gtagcaatac agcagctacc aatgctgatt gtgcctggct agaagcacaa gaggaggagg + 6901 aggtgggttt tccagtcaca cctcaggtac ctttaagacc aatgacttac aaggcagctg + 6961 tagatcttag ccacttttta aaagaaaagg ggggactgga agggctaatt cactcccaac + 7021 gaagacaaga tatccttgat ctgtggatct accacacaca aggctacttc cctgattggc + 7081 agaactacac accagggcca gggatcagat atccactgac ctttggatgg tgctacaagc + 7141 tagtaccagt tgagcaagag aaggtagaag aagccaatga aggagagaac acccgcttgt + 7201 tacaccctgt gagcctgcat gggatggatg acccggagag agaagtatta gagtggaggt + 7261 ttgacagccg cctagcattt catcacatgg cccgagagct gcatccggac tgtactgggt + 7321 ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc + 7381 ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg + 7441 actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagcaggg + 7501 cccgtttaaa cccgctgatc agcctcgact gtgccttcta gttgccagcc atctgttgtt + 7561 tgcccctccc ccgtgccttc cttgaccctg gaaggtgcca ctcccactgt cctttcctaa + 7621 taaaatgagg aaattgcatc gcattgtctg agtaggtgtc attctattct ggggggtggg + 7681 gtggggcagg acagcaaggg ggaggattgg gaagacaata gcaggcatgc tggggatgcg + 7741 gtgggctcta tggcttctga ggcggaaaga accagctggg gctctagggg gtatccccac + 7801 gcgccctgta gcggcgcatt aagcgcggcg ggtgtggtgg ttacgcgcag cgtgaccgct + 7861 acacttgcca gcgccctagc gcccgctcct ttcgctttct tcccttcctt tctcgccacg + 7921 ttcgccggct ttccccgtca agctctaaat cgggggctcc ctttagggtt ccgatttagt + 7981 gctttacggc acctcgaccc caaaaaactt gattagggtg atggttcacg tagtgggcca + 8041 tcgccctgat agacggtttt tcgccctttg acgttggagt ccacgttctt taatagtgga + 8101 ctcttgttcc aaactggaac aacactcaac cctatctcgg tctattcttt tgatttataa + 8161 gggattttgc cgatttcggc ctattggtta aaaaatgagc tgatttaaca aaaatttaac + 8221 gcgaattaat tctgtggaat gtgtgtcagt tagggtgtgg aaagtcccca ggctccccag + 8281 caggcagaag tatgcaaagc atgcatctca attagtcagc aaccaggtgt ggaaagtccc + 8341 caggctcccc agcaggcaga agtatgcaaa gcatgcatct caattagtca gcaaccatag + 8401 tcccgcccct aactccgccc atcccgcccc taactccgcc cagttccgcc cattctccgc + 8461 cccatggctg actaattttt tttatttatg cagaggccga ggccgcctct gcctctgagc + 8521 tattccagaa gtagtgagga ggcttttttg gaggcctagg cttttgcaaa aagctcccgg + 8581 gagcttgtat atccattttc ggatctgatc agcacgtgtt gacaattaat catcggcata + 8641 gtatatcggc atagtataat acgacaaggt gaggaactaa accatggcca agttgaccag + 8701 tgccgttccg gtgctcaccg cgcgcgacgt cgccggagcg gtcgagttct ggaccgaccg + 8761 gctcgggttc tcccgggact tcgtggagga cgacttcgcc ggtgtggtcc gggacgacgt + 8821 gaccctgttc atcagcgcgg tccaggacca ggtggtgccg gacaacaccc tggcctgggt + 8881 gtgggtgcgc ggcctggacg agctgtacgc cgagtggtcg gaggtcgtgt ccacgaactt + 8941 ccgggacgcc tccgggccgg ccatgaccga gatcggcgag cagccgtggg ggcgggagtt + 9001 cgccctgcgc gacccggccg gcaactgcgt gcacttcgtg gccgaggagc aggactgaca + 9061 cgtgctacga gatttcgatt ccaccgccgc cttctatgaa aggttgggct tcggaatcgt + 9121 tttccgggac gccggctgga tgatcctcca gcgcggggat ctcatgctgg agttcttcgc + 9181 ccaccccaac ttgtttattg cagcttataa tggttacaaa taaagcaata gcatcacaaa + 9241 tttcacaaat aaagcatttt tttcactgca ttctagttgt ggtttgtcca aactcatcaa + 9301 tgtatcttat catgtctgta taccgtcgac ctctagctag agcttggcgt aatcatggtc + 9361 atagctgttt cctgtgtgaa attgttatcc gctcacaatt ccacacaaca tacgagccgg + 9421 aagcataaag tgtaaagcct ggggtgccta atgagtgagc taactcacat taattgcgtt + 9481 gcgctcactg cccgctttcc agtcgggaaa cctgtcgtgc cagctgcatt aatgaatcgg + 9541 ccaacgcgcg gggagaggcg gtttgcgtat tgggcgctct tccgcttcct cgctcactga + 9601 ctcgctgcgc tcggtcgttc ggctgcggcg agcggtatca gctcactcaa aggcggtaat + 9661 acggttatcc acagaatcag gggataacgc aggaaagaac atgtgagcaa aaggccagca + 9721 aaaggccagg aaccgtaaaa aggccgcgtt gctggcgttt ttccataggc tccgcccccc + 9781 tgacgagcat cacaaaaatc gacgctcaag tcagaggtgg cgaaacccga caggactata + 9841 aagataccag gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc + 9901 gcttaccgga tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc + 9961 acgctgtagg tatctcagtt cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga + 10021 accccccgtt cagcccgacc gctgcgcctt atccggtaac tatcgtcttg agtccaaccc + 10081 ggtaagacac gacttatcgc cactggcagc agccactggt aacaggatta gcagagcgag + 10141 gtatgtaggc ggtgctacag agttcttgaa gtggtggcct aactacggct acactagaag + 10201 aacagtattt ggtatctgcg ctctgctgaa gccagttacc ttcggaaaaa gagttggtag + 10261 ctcttgatcc ggcaaacaaa ccaccgctgg tagcggtggt ttttttgttt gcaagcagca + 10321 gattacgcgc agaaaaaaag gatctcaaga agatcctttg atcttttcta cggggtctga + 10381 cgctcagtgg aacgaaaact cacgttaagg gattttggtc atgagattat caaaaaggat + 10441 cttcacctag atccttttaa attaaaaatg aagttttaaa tcaatctaaa gtatatatga + 10501 gtaaacttgg tctgacagtt accaatgctt aatcagtgag gcacctatct cagcgatctg + 10561 tctatttcgt tcatccatag ttgcctgact ccccgtcgtg tagataacta cgatacggga + 10621 gggcttacca tctggcccca gtgctgcaat gataccgcga gacccacgct caccggctcc + 10681 agatttatca gcaataaacc agccagccgg aagggccgag cgcagaagtg gtcctgcaac + 10741 tttatccgcc tccatccagt ctattaattg ttgccgggaa gctagagtaa gtagttcgcc + 10801 agttaatagt ttgcgcaacg ttgttgccat tgctacaggc atcgtggtgt cacgctcgtc + 10861 gtttggtatg gcttcattca gctccggttc ccaacgatca aggcgagtta catgatcccc + 10921 catgttgtgc aaaaaagcgg ttagctcctt cggtcctccg atcgttgtca gaagtaagtt + 10981 ggccgcagtg ttatcactca tggttatggc agcactgcat aattctctta ctgtcatgcc + 11041 atccgtaaga tgcttttctg tgactggtga gtactcaacc aagtcattct gagaatagtg + 11101 tatgcggcga ccgagttgct cttgcccggc gtcaatacgg gataataccg cgccacatag + 11161 cagaacttta aaagtgctca tcattggaaa acgttcttcg gggcgaaaac tctcaaggat + 11221 cttaccgctg ttgagatcca gttcgatgta acccactcgt gcacccaact gatcttcagc + 11281 atcttttact ttcaccagcg tttctgggtg agcaaaaaca ggaaggcaaa atgccgcaaa + 11341 aaagggaata agggcgacac ggaaatgttg aatactcata ctcttccttt ttcaatatta + 11401 ttgaagcatt tatcagggtt attgtctcat gagcggatac atatttgaat gtatttagaa + 11461 aaataaacaa ataggggttc cgcgcacatt tccccgaaaa gtgccacctg ac // diff --git a/scripts/BioJSON-master/testfiles/na.gb b/scripts/BioJSON-master/testfiles/na.gb index 8de5e832..a8039055 100644 --- a/scripts/BioJSON-master/testfiles/na.gb +++ b/scripts/BioJSON-master/testfiles/na.gb @@ -1,12 +1,13 @@ LOCUS na 13267 bp DNA circular UNK 03-JUN-2015 -DEFINITION cSEGUID_yljyOOnc6_A44a08BJ3D0AKiBfk_2015-06-03T16:31:35.142760 +DEFINITION cSEGUID_yljyOOnc6_A44a08BJ3D0AKiBfk_2015-06-03T16:31:35.142760. ACCESSION - VERSION - -DBLINK BioProject:PRJNA43747 +DBLINK BioProject: PRJNA43747 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=yaHeF7laGhmHj-xDD4hp_l9qtFw 2024-06-11T18:53:13 FEATURES Location/Qualifiers overlap 363..486 /note="olp_GqXRnFdj0bUssSD9FyJPEMLnbh0" diff --git a/scripts/BioJSON-master/testfiles/pGADT7-Rec.gb b/scripts/BioJSON-master/testfiles/pGADT7-Rec.gb index 3a3cd1b0..6fd6f259 100644 --- a/scripts/BioJSON-master/testfiles/pGADT7-Rec.gb +++ b/scripts/BioJSON-master/testfiles/pGADT7-Rec.gb @@ -1,166 +1,174 @@ -LOCUS pGADT7-Rec 8058 bp DNA circular 23-DEC-2010 +LOCUS pGADT7-Rec 8058 bp DNA circular UNK 23-DEC-2010 +DEFINITION . +ACCESSION pGADT7-Rec +VERSION pGADT7-Rec +KEYWORDS . +SOURCE + ORGANISM . + . COMMENT Created by Clontech Laboratories Inc. http://www.clontech.com -COMMENT Cat. No. 630471,630477,630478,630469,630491,630468,630490,630470,630476 + Cat. No. + 630471,630477,630478,630469,630491,630468,630490,630470,630476 + pydna cdseguid=L0wFG4Mx6rWMYej1cNpCqSYGOd0 2024-06-11T18:40:54 FEATURES Location/Qualifiers misc_feature 7..1478 - /label=ADH1\Promoter + /label="ADH1\Promoter" misc_feature 1500..1556 - /label=SV40\NLS + /label="SV40\NLS" misc_feature 1560..1898 - /label=GAL4\AD + /label="GAL4\AD" misc_feature 1904..1926 - /label=T7\Promoter + /label="T7\Promoter" misc_feature 1941..1967 - /label=Hemagglutinin\(HA)\tag + /label="Hemagglutinin\(HA)\tag" misc_feature 2000..2035 - /label=SMART\III\Oligonucleotide\Sequence + /label="SMART\III\Oligonucleotide\Sequence" misc_feature 2046..2070 - /label=CDS\III\Sequence + /label="CDS\III\Sequence" misc_feature 2350..2675 - /label=ADH1\Transcription\terminator + /label="ADH1\Transcription\terminator" misc_feature complement(2793..3884) - /label=LEU2 + /label="LEU2" misc_feature 4651..5488 - /label=pUC\origin + /label="pUC\origin" misc_feature complement(5645..6502) - /label=Amp(R) + /label="Amp(R)" misc_feature 7068..8058 - /label=2\micron\origin -BASE COUNT 2302 a 1793 c 1716 g 2247 t + /label="2\micron\origin" ORIGIN - 1 tgcatgcctg caggtcgaga tccgggatcg aagaaatgat ggtaaatgaa ataggaaatc - 61 aaggagcatg aaggcaaaag acaaatataa gggtcgaacg aaaaataaag tgaaaagtgt - 121 tgatatgatg tatttggctt tgcggcgccg aaaaaacgag tttacgcaat tgcacaatca - 181 tgctgactct gtggcggacc cgcgctcttg ccggcccggc gataacgctg ggcgtgaggc - 241 tgtgcccggc ggagtttttt gcgcctgcat tttccaaggt ttaccctgcg ctaaggggcg - 301 agattggaga agcaataaga atgccggttg gggttgcgat gatgacgacc acgacaactg - 361 gtgtcattat ttaagttgcc gaaagaacct gagtgcattt gcaacatgag tatactagaa - 421 gaatgagcca agacttgcga gacgcgagtt tgccggtggt gcgaacaata gagcgaccat - 481 gaccttgaag gtgagacgcg cataaccgct agagtacttt gaagaggaaa cagcaatagg - 541 gttgctacca gtataaatag acaggtacat acaacactgg aaatggttgt ctgtttgagt - 601 acgctttcaa ttcatttggg tgtgcacttt attatgttac aatatggaag ggaactttac - 661 acttctccta tgcacatata ttaattaaag tccaatgcta gtagagaagg ggggtaacac - 721 ccctccgcgc tcttttccga tttttttcta aaccgtggaa tatttcggat atccttttgt - 781 tgtttccggg tgtacaatat ggacttcctc ttttctggca accaaaccca tacatcggga - 841 ttcctataat accttcgttg gtctccctaa catgtaggtg gcggagggga gatatacaat - 901 agaacagata ccagacaaga cataatgggc taaacaagac tacaccaatt acactgcctc - 961 attgatggtg gtacataacg aactaatact gtagccctag acttgatagc catcatcata - 1021 tcgaagtttc actacccttt ttccatttgc catctattga agtaataata ggcgcatgca - 1081 acttcttttc tttttttttc ttttctctct cccccgttgt tgtctcacca tatccgcaat - 1141 gacaaaaaaa tgatggaaga cactaaagga aaaaattaac gacaaagaca gcaccaacag - 1201 atgtcgttgt tccagagctg atgaggggta tctcgaagca cacgaaactt tttccttcct - 1261 tcattcacgc acactactct ctaatgagca acggtatacg gccttccttc cagttacttg - 1321 aatttgaaat aaaaaaaagt ttgctgtctt gctatcaagt ataaatagac ctgcaattat - 1381 taatcttttg tttcctcgtc attgttctcg ttccctttct tccttgtttc tttttctgca - 1441 caatatttca agctatacca agcatacaat caactccaag ctttgcaaag atggataaag - 1501 cggaattaat tcccgagcct ccaaaaaaga agagaaaggt cgaattgggt accgccgcca - 1561 attttaatca aagtgggaat attgctgata gctcattgtc cttcactttc actaacagta - 1621 gcaacggtcc gaacctcata acaactcaaa caaattctca agcgctttca caaccaattg - 1681 cctcctctaa cgttcatgat aacttcatga ataatgaaat cacggctagt aaaattgatg - 1741 atggtaataa ttcaaaacca ctgtcacctg gttggacgga ccaaactgcg tataacgcgt - 1801 ttggaatcac tacagggatg tttaatacca ctacaatgga tgatgtatat aactatctat - 1861 tcgatgatga agatacccca ccaaacccaa aaaaagagat ctttaatacg actcactata - 1921 gggcgagcgc cgccatggag tacccatacg acgtaccaga ttacgctcat atggccatgg - 1981 aggccagtga attccaccca agcagtggta tcaacgcaga gtggccatta tggcccggga - 2041 aaaaacatgt cggccgcctc ggcctctaga gggtgggcat cgatacggga tccatcgagc - 2101 tcgagctgca gatgaatcgt agatactgaa aaaccccgca agttcacttc aactgtgcat - 2161 cgtgcaccat ctcaatttct ttcatttata catcgttttg ccttctttta tgtaactata - 2221 ctcctctaag tttcaatctt ggccatgtaa cctctgatct atagaatttt ttaaatgact - 2281 agaattaatg cccatctttt ttttggacct aaattcttca tgaaaatata ttacgagggc - 2341 ttattcagaa gctttggact tcttcgccag aggtttggtc aagtctccaa tcaaggttgt - 2401 cggcttgtct accttgccag aaatttacga aaagatggaa aagggtcaaa tcgttggtag - 2461 atacgttgtt gacacttcta aataagcgaa tttcttatga tttatgattt ttattattaa - 2521 ataagttata aaaaaaataa gtgtatacaa attttaaagt gactcttagg ttttaaaacg - 2581 aaaattctta ttcttgagta actctttcct gtaggtcagg ttgctttctc aggtatagca - 2641 tgaggtcgct cttattgacc acacctctac cggccggtcg aaattcccct accctatgaa - 2701 catattccat tttgtaattt cgtgtcgttt ctattatgaa tttcatttat aaagtttatg - 2761 tacaaatatc ataaaaaaag agaatctttt taagcaagga ttttcttaac ttcttcggcg - 2821 acagcatcac cgacttcggt ggtactgttg gaaccaccta aatcaccagt tctgatacct - 2881 gcatccaaaa cctttttaac tgcatcttca atggccttac cttcttcagg caagttcaat - 2941 gacaatttca acatcattgc agcagacaag atagtggcga tagggttgac cttattcttt - 3001 ggcaaatctg gagcagaacc gtggcatggt tcgtacaaac caaatgcggt gttcttgtct - 3061 ggcaaagagg ccaaggacgc agatggcaac aaacccaagg aacctgggat aacggaggct - 3121 tcatcggaga tgatatcacc aaacatgttg ctggtgatta taataccatt taggtgggtt - 3181 gggttcttaa ctaggatcat ggcggcagaa tcaatcaatt gatgttgaac cttcaatgta - 3241 ggaaattcgt tcttgatggt ttcctccaca gtttttctcc ataatcttga agaggccaaa - 3301 acattagctt tatccaagga ccaaataggc aatggtggct catgttgtag ggccatgaaa - 3361 gcggccattc ttgtgattct ttgcacttct ggaacggtgt attgttcact atcccaagcg - 3421 acaccatcac catcgtcttc ctttctctta ccaaagtaaa tacctcccac taattctctg - 3481 acaacaacga agtcagtacc tttagcaaat tgtggcttga ttggagataa gtctaaaaga - 3541 gagtcggatg caaagttaca tggtcttaag ttggcgtaca attgaagttc tttacggatt - 3601 tttagtaaac cttgttcagg tctaacacta cctgtacccc atttaggacc acccacagca - 3661 cctaacaaaa cggcatcagc cttcttggag gcttccagcg cctcatctgg aagtgggaca - 3721 cctgtagctt cgatagcagc accaccaatt aaatgatttt cgaaatcgaa cttgacattg - 3781 gaacgaacat cagaaatagc tttaagaacc ttaatggctt cggctgtgat ttcttgacca - 3841 acgtggtcac ctggcaaaac gacgatcttc ttaggggcag acattagaat ggtatatcct - 3901 tgaaatatat atatatattg ctgaaatgta aaaggtaaga aaagttagaa agtaagacga - 3961 ttgctaacca cctattggaa aaaacaatag gtccttaaat aatattgtca acttcaagta - 4021 ttgtgatgca agcatttagt catgaacgct tctctattct atatgaaaag ccggttccgg - 4081 cgctctcacc tttccttttt ctcccaattt ttcagttgaa aaaggtatat gcgtcaggcg - 4141 acctctgaaa ttaacaaaaa atttccagtc atcgaatttg attctgtgcg atagcgcccc - 4201 tgtgtgttct cgttatgttg aggaaaaaaa taatggttgc taagagattc gaactcttgc - 4261 atcttacgat acctgagtat tcccacagtt gggggatctc gactctagct agaggatcaa - 4321 ttcgtaatca tgtcatagct gtttcctgtg tgaaattgtt atccgctcac aattccacac - 4381 aacatacgag ccggaagcat aaagtgtaaa gcctggggtg cctaatgagt gagctaactc - 4441 acattaattg cgttgcgctc actgcccgct ttccagtcgg gaaacctgtc gtgccagctg - 4501 ataacttcgt ataatgtatg ctatacgaag ttattaggtc tgaagaggag tttacgtcca - 4561 gccaagctag cttggctgca ggtcgagcgg ccgcgatccg gaacccttaa tataacttcg - 4621 tataatgtat gctatacgaa gttatcagct gcattaatga atcggccaac gcgcggggag - 4681 aggcggtttg cgtattgggc gctcttccgc ttcctcgctc actgactcgc tgcgctcggt - 4741 cgttcggctg cggcgagcgg tatcagctca ctcaaaggcg gtaatacggt tatccacaga - 4801 atcaggggat aacgcaggaa agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg - 4861 taaaaaggcc gcgttgctgg cgtttttcca taggctccgc ccccctgacg agcatcacaa - 4921 aaatcgacgc tcaagtcaga ggtggcgaaa cccgacagga ctataaagat accaggcgtt - 4981 tccccctgga agctccctcg tgcgctctcc tgttccgacc ctgccgctta ccggatacct - 5041 gtccgccttt ctcccttcgg gaagcgtggc gctttctcat agctcacgct gtaggtatct - 5101 cagttcggtg taggtcgttc gctccaagct gggctgtgtg cacgaacccc ccgttcagcc - 5161 cgaccgctgc gccttatccg gtaactatcg tcttgagtcc aacccggtaa gacacgactt - 5221 atcgccactg gcagcagcca ctggtaacag gattagcaga gcgaggtatg taggcggtgc - 5281 tacagagttc ttgaagtggt ggcctaacta cggctacact agaagaacag tatttggtat - 5341 ctgcgctctg ctgaagccag ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa - 5401 acaaaccacc gctggtagcg gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa - 5461 aaaaggatct caagaagatc ctttgatctt ttctacgggg tctgacgctc agtggaacga - 5521 aaactcacgt taagggattt tggtcatgag attatcaaaa aggatcttca cctagatcct - 5581 tttaaattaa aaatgaagtt ttaaatcaat ctaaagtata tatgagtaaa cttggtctga - 5641 cagttaccaa tgcttaatca gtgaggcacc tatctcagcg atctgtctat ttcgttcatc - 5701 catagttgcc tgactccccg tcgtgtagat aactacgata cgggagggct taccatctgg - 5761 ccccagtgct gcaatgatac cgcgagaccc acgctcaccg gctccagatt tatcagcaat - 5821 aaaccagcca gccggaaggg ccgagcgcag aagtggtcct gcaactttat ccgcctccat - 5881 ccagtctatt aattgttgcc gggaagctag agtaagtagt tcgccagtta atagtttgcg - 5941 caacgttgtt gccattgcta caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc - 6001 attcagctcc ggttcccaac gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa - 6061 agcggttagc tccttcggtc ctccgatcgt tgtcagaagt aagttggccg cagtgttatc - 6121 actcatggtt atggcagcac tgcataattc tcttactgtc atgccatccg taagatgctt - 6181 ttctgtgact ggtgagtact caaccaagtc attctgagaa tagtgtatgc ggcgaccgag - 6241 ttgctcttgc ccggcgtcaa tacgggataa taccgcgcca catagcagaa ctttaaaagt - 6301 gctcatcatt ggaaaacgtt cttcggggcg aaaactctca aggatcttac cgctgttgag - 6361 atccagttcg atgtaaccca ctcgtgcacc caactgatct tcagcatctt ttactttcac - 6421 cagcgtttct gggtgagcaa aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc - 6481 gacacggaaa tgttgaatac tcatactctt cctttttcaa tattattgaa gcatttatca - 6541 gggttattgt ctcatgagcg gatacatatt tgaatgtatt tagaaaaata aacaaatagg - 6601 ggttccgcgc acatttcccc gaaaagtgcc acctgacgtc taagaaacca ttattatcat - 6661 gacattaacc tataaaaata ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga - 6721 tgacggtgaa aacctctgac acatgcagct cccggagacg gtcacagctt gtctgtaagc - 6781 ggatgccggg agcagacaag cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg - 6841 ctggcttaac tatgcggcat cagagcagat tgtactgaga gtgcaccata acgcatttaa - 6901 gcataaacac gcactatgcc gttcttctca tgtatatata tatacaggca acacgcagat - 6961 ataggtgcga cgtgaacagt gagctgtatg tgcgcagctc gcgttgcatt ttcggaagcg - 7021 ctcgttttcg gaaacgcttt gaagttccta ttccgaagtt cctattctct agctagaaag - 7081 tataggaact tcagagcgct tttgaaaacc aaaagcgctc tgaagacgca ctttcaaaaa - 7141 accaaaaacg caccggactg taacgagcta ctaaaatatt gcgaataccg cttccacaaa - 7201 cattgctcaa aagtatctct ttgctatata tctctgtgct atatccctat ataacctacc - 7261 catccacctt tcgctccttg aacttgcatc taaactcgac ctctacattt tttatgttta - 7321 tctctagtat tactctttag acaaaaaaat tgtagtaaga actattcata gagtgaatcg - 7381 aaaacaatac gaaaatgtaa acatttccta tacgtagtat atagagacaa aatagaagaa - 7441 accgttcata attttctgac caatgaagaa tcatcaacgc tatcactttc tgttcacaaa - 7501 gtatgcgcaa tccacatcgg tatagaatat aatcggggat gcctttatct tgaaaaaatg - 7561 cacccgcagc ttcgctagta atcagtaaac gcgggaagtg gagtcaggct ttttttatgg - 7621 aagagaaaat agacaccaaa gtagccttct tctaacctta acggacctac agtgcaaaaa - 7681 gttatcaaga gactgcatta tagagcgcac aaaggagaaa aaaagtaatc taagatgctt - 7741 tgttagaaaa atagcgctct cgggatgcat ttttgtagaa caaaaaagaa gtatagattc - 7801 tttgttggta aaatagcgct ctcgcgttgc atttctgttc tgtaaaaatg cagctcagat - 7861 tctttgtttg aaaaattagc gctctcgcgt tgcatttttg ttttacaaaa atgaagcaca - 7921 gattcttcgt tggtaaaata gcgctttcgc gttgcatttc tgttctgtaa aaatgcagct - 7981 cagattcttt gtttgaaaaa ttagcgctct cgcgttgcat ttttgttcta caaaatgaag - 8041 cacagatgct tcgttgct + 1 tgcatgcctg caggtcgaga tccgggatcg aagaaatgat ggtaaatgaa ataggaaatc + 61 aaggagcatg aaggcaaaag acaaatataa gggtcgaacg aaaaataaag tgaaaagtgt + 121 tgatatgatg tatttggctt tgcggcgccg aaaaaacgag tttacgcaat tgcacaatca + 181 tgctgactct gtggcggacc cgcgctcttg ccggcccggc gataacgctg ggcgtgaggc + 241 tgtgcccggc ggagtttttt gcgcctgcat tttccaaggt ttaccctgcg ctaaggggcg + 301 agattggaga agcaataaga atgccggttg gggttgcgat gatgacgacc acgacaactg + 361 gtgtcattat ttaagttgcc gaaagaacct gagtgcattt gcaacatgag tatactagaa + 421 gaatgagcca agacttgcga gacgcgagtt tgccggtggt gcgaacaata gagcgaccat + 481 gaccttgaag gtgagacgcg cataaccgct agagtacttt gaagaggaaa cagcaatagg + 541 gttgctacca gtataaatag acaggtacat acaacactgg aaatggttgt ctgtttgagt + 601 acgctttcaa ttcatttggg tgtgcacttt attatgttac aatatggaag ggaactttac + 661 acttctccta tgcacatata ttaattaaag tccaatgcta gtagagaagg ggggtaacac + 721 ccctccgcgc tcttttccga tttttttcta aaccgtggaa tatttcggat atccttttgt + 781 tgtttccggg tgtacaatat ggacttcctc ttttctggca accaaaccca tacatcggga + 841 ttcctataat accttcgttg gtctccctaa catgtaggtg gcggagggga gatatacaat + 901 agaacagata ccagacaaga cataatgggc taaacaagac tacaccaatt acactgcctc + 961 attgatggtg gtacataacg aactaatact gtagccctag acttgatagc catcatcata + 1021 tcgaagtttc actacccttt ttccatttgc catctattga agtaataata ggcgcatgca + 1081 acttcttttc tttttttttc ttttctctct cccccgttgt tgtctcacca tatccgcaat + 1141 gacaaaaaaa tgatggaaga cactaaagga aaaaattaac gacaaagaca gcaccaacag + 1201 atgtcgttgt tccagagctg atgaggggta tctcgaagca cacgaaactt tttccttcct + 1261 tcattcacgc acactactct ctaatgagca acggtatacg gccttccttc cagttacttg + 1321 aatttgaaat aaaaaaaagt ttgctgtctt gctatcaagt ataaatagac ctgcaattat + 1381 taatcttttg tttcctcgtc attgttctcg ttccctttct tccttgtttc tttttctgca + 1441 caatatttca agctatacca agcatacaat caactccaag ctttgcaaag atggataaag + 1501 cggaattaat tcccgagcct ccaaaaaaga agagaaaggt cgaattgggt accgccgcca + 1561 attttaatca aagtgggaat attgctgata gctcattgtc cttcactttc actaacagta + 1621 gcaacggtcc gaacctcata acaactcaaa caaattctca agcgctttca caaccaattg + 1681 cctcctctaa cgttcatgat aacttcatga ataatgaaat cacggctagt aaaattgatg + 1741 atggtaataa ttcaaaacca ctgtcacctg gttggacgga ccaaactgcg tataacgcgt + 1801 ttggaatcac tacagggatg tttaatacca ctacaatgga tgatgtatat aactatctat + 1861 tcgatgatga agatacccca ccaaacccaa aaaaagagat ctttaatacg actcactata + 1921 gggcgagcgc cgccatggag tacccatacg acgtaccaga ttacgctcat atggccatgg + 1981 aggccagtga attccaccca agcagtggta tcaacgcaga gtggccatta tggcccggga + 2041 aaaaacatgt cggccgcctc ggcctctaga gggtgggcat cgatacggga tccatcgagc + 2101 tcgagctgca gatgaatcgt agatactgaa aaaccccgca agttcacttc aactgtgcat + 2161 cgtgcaccat ctcaatttct ttcatttata catcgttttg ccttctttta tgtaactata + 2221 ctcctctaag tttcaatctt ggccatgtaa cctctgatct atagaatttt ttaaatgact + 2281 agaattaatg cccatctttt ttttggacct aaattcttca tgaaaatata ttacgagggc + 2341 ttattcagaa gctttggact tcttcgccag aggtttggtc aagtctccaa tcaaggttgt + 2401 cggcttgtct accttgccag aaatttacga aaagatggaa aagggtcaaa tcgttggtag + 2461 atacgttgtt gacacttcta aataagcgaa tttcttatga tttatgattt ttattattaa + 2521 ataagttata aaaaaaataa gtgtatacaa attttaaagt gactcttagg ttttaaaacg + 2581 aaaattctta ttcttgagta actctttcct gtaggtcagg ttgctttctc aggtatagca + 2641 tgaggtcgct cttattgacc acacctctac cggccggtcg aaattcccct accctatgaa + 2701 catattccat tttgtaattt cgtgtcgttt ctattatgaa tttcatttat aaagtttatg + 2761 tacaaatatc ataaaaaaag agaatctttt taagcaagga ttttcttaac ttcttcggcg + 2821 acagcatcac cgacttcggt ggtactgttg gaaccaccta aatcaccagt tctgatacct + 2881 gcatccaaaa cctttttaac tgcatcttca atggccttac cttcttcagg caagttcaat + 2941 gacaatttca acatcattgc agcagacaag atagtggcga tagggttgac cttattcttt + 3001 ggcaaatctg gagcagaacc gtggcatggt tcgtacaaac caaatgcggt gttcttgtct + 3061 ggcaaagagg ccaaggacgc agatggcaac aaacccaagg aacctgggat aacggaggct + 3121 tcatcggaga tgatatcacc aaacatgttg ctggtgatta taataccatt taggtgggtt + 3181 gggttcttaa ctaggatcat ggcggcagaa tcaatcaatt gatgttgaac cttcaatgta + 3241 ggaaattcgt tcttgatggt ttcctccaca gtttttctcc ataatcttga agaggccaaa + 3301 acattagctt tatccaagga ccaaataggc aatggtggct catgttgtag ggccatgaaa + 3361 gcggccattc ttgtgattct ttgcacttct ggaacggtgt attgttcact atcccaagcg + 3421 acaccatcac catcgtcttc ctttctctta ccaaagtaaa tacctcccac taattctctg + 3481 acaacaacga agtcagtacc tttagcaaat tgtggcttga ttggagataa gtctaaaaga + 3541 gagtcggatg caaagttaca tggtcttaag ttggcgtaca attgaagttc tttacggatt + 3601 tttagtaaac cttgttcagg tctaacacta cctgtacccc atttaggacc acccacagca + 3661 cctaacaaaa cggcatcagc cttcttggag gcttccagcg cctcatctgg aagtgggaca + 3721 cctgtagctt cgatagcagc accaccaatt aaatgatttt cgaaatcgaa cttgacattg + 3781 gaacgaacat cagaaatagc tttaagaacc ttaatggctt cggctgtgat ttcttgacca + 3841 acgtggtcac ctggcaaaac gacgatcttc ttaggggcag acattagaat ggtatatcct + 3901 tgaaatatat atatatattg ctgaaatgta aaaggtaaga aaagttagaa agtaagacga + 3961 ttgctaacca cctattggaa aaaacaatag gtccttaaat aatattgtca acttcaagta + 4021 ttgtgatgca agcatttagt catgaacgct tctctattct atatgaaaag ccggttccgg + 4081 cgctctcacc tttccttttt ctcccaattt ttcagttgaa aaaggtatat gcgtcaggcg + 4141 acctctgaaa ttaacaaaaa atttccagtc atcgaatttg attctgtgcg atagcgcccc + 4201 tgtgtgttct cgttatgttg aggaaaaaaa taatggttgc taagagattc gaactcttgc + 4261 atcttacgat acctgagtat tcccacagtt gggggatctc gactctagct agaggatcaa + 4321 ttcgtaatca tgtcatagct gtttcctgtg tgaaattgtt atccgctcac aattccacac + 4381 aacatacgag ccggaagcat aaagtgtaaa gcctggggtg cctaatgagt gagctaactc + 4441 acattaattg cgttgcgctc actgcccgct ttccagtcgg gaaacctgtc gtgccagctg + 4501 ataacttcgt ataatgtatg ctatacgaag ttattaggtc tgaagaggag tttacgtcca + 4561 gccaagctag cttggctgca ggtcgagcgg ccgcgatccg gaacccttaa tataacttcg + 4621 tataatgtat gctatacgaa gttatcagct gcattaatga atcggccaac gcgcggggag + 4681 aggcggtttg cgtattgggc gctcttccgc ttcctcgctc actgactcgc tgcgctcggt + 4741 cgttcggctg cggcgagcgg tatcagctca ctcaaaggcg gtaatacggt tatccacaga + 4801 atcaggggat aacgcaggaa agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg + 4861 taaaaaggcc gcgttgctgg cgtttttcca taggctccgc ccccctgacg agcatcacaa + 4921 aaatcgacgc tcaagtcaga ggtggcgaaa cccgacagga ctataaagat accaggcgtt + 4981 tccccctgga agctccctcg tgcgctctcc tgttccgacc ctgccgctta ccggatacct + 5041 gtccgccttt ctcccttcgg gaagcgtggc gctttctcat agctcacgct gtaggtatct + 5101 cagttcggtg taggtcgttc gctccaagct gggctgtgtg cacgaacccc ccgttcagcc + 5161 cgaccgctgc gccttatccg gtaactatcg tcttgagtcc aacccggtaa gacacgactt + 5221 atcgccactg gcagcagcca ctggtaacag gattagcaga gcgaggtatg taggcggtgc + 5281 tacagagttc ttgaagtggt ggcctaacta cggctacact agaagaacag tatttggtat + 5341 ctgcgctctg ctgaagccag ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa + 5401 acaaaccacc gctggtagcg gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa + 5461 aaaaggatct caagaagatc ctttgatctt ttctacgggg tctgacgctc agtggaacga + 5521 aaactcacgt taagggattt tggtcatgag attatcaaaa aggatcttca cctagatcct + 5581 tttaaattaa aaatgaagtt ttaaatcaat ctaaagtata tatgagtaaa cttggtctga + 5641 cagttaccaa tgcttaatca gtgaggcacc tatctcagcg atctgtctat ttcgttcatc + 5701 catagttgcc tgactccccg tcgtgtagat aactacgata cgggagggct taccatctgg + 5761 ccccagtgct gcaatgatac cgcgagaccc acgctcaccg gctccagatt tatcagcaat + 5821 aaaccagcca gccggaaggg ccgagcgcag aagtggtcct gcaactttat ccgcctccat + 5881 ccagtctatt aattgttgcc gggaagctag agtaagtagt tcgccagtta atagtttgcg + 5941 caacgttgtt gccattgcta caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc + 6001 attcagctcc ggttcccaac gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa + 6061 agcggttagc tccttcggtc ctccgatcgt tgtcagaagt aagttggccg cagtgttatc + 6121 actcatggtt atggcagcac tgcataattc tcttactgtc atgccatccg taagatgctt + 6181 ttctgtgact ggtgagtact caaccaagtc attctgagaa tagtgtatgc ggcgaccgag + 6241 ttgctcttgc ccggcgtcaa tacgggataa taccgcgcca catagcagaa ctttaaaagt + 6301 gctcatcatt ggaaaacgtt cttcggggcg aaaactctca aggatcttac cgctgttgag + 6361 atccagttcg atgtaaccca ctcgtgcacc caactgatct tcagcatctt ttactttcac + 6421 cagcgtttct gggtgagcaa aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc + 6481 gacacggaaa tgttgaatac tcatactctt cctttttcaa tattattgaa gcatttatca + 6541 gggttattgt ctcatgagcg gatacatatt tgaatgtatt tagaaaaata aacaaatagg + 6601 ggttccgcgc acatttcccc gaaaagtgcc acctgacgtc taagaaacca ttattatcat + 6661 gacattaacc tataaaaata ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga + 6721 tgacggtgaa aacctctgac acatgcagct cccggagacg gtcacagctt gtctgtaagc + 6781 ggatgccggg agcagacaag cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg + 6841 ctggcttaac tatgcggcat cagagcagat tgtactgaga gtgcaccata acgcatttaa + 6901 gcataaacac gcactatgcc gttcttctca tgtatatata tatacaggca acacgcagat + 6961 ataggtgcga cgtgaacagt gagctgtatg tgcgcagctc gcgttgcatt ttcggaagcg + 7021 ctcgttttcg gaaacgcttt gaagttccta ttccgaagtt cctattctct agctagaaag + 7081 tataggaact tcagagcgct tttgaaaacc aaaagcgctc tgaagacgca ctttcaaaaa + 7141 accaaaaacg caccggactg taacgagcta ctaaaatatt gcgaataccg cttccacaaa + 7201 cattgctcaa aagtatctct ttgctatata tctctgtgct atatccctat ataacctacc + 7261 catccacctt tcgctccttg aacttgcatc taaactcgac ctctacattt tttatgttta + 7321 tctctagtat tactctttag acaaaaaaat tgtagtaaga actattcata gagtgaatcg + 7381 aaaacaatac gaaaatgtaa acatttccta tacgtagtat atagagacaa aatagaagaa + 7441 accgttcata attttctgac caatgaagaa tcatcaacgc tatcactttc tgttcacaaa + 7501 gtatgcgcaa tccacatcgg tatagaatat aatcggggat gcctttatct tgaaaaaatg + 7561 cacccgcagc ttcgctagta atcagtaaac gcgggaagtg gagtcaggct ttttttatgg + 7621 aagagaaaat agacaccaaa gtagccttct tctaacctta acggacctac agtgcaaaaa + 7681 gttatcaaga gactgcatta tagagcgcac aaaggagaaa aaaagtaatc taagatgctt + 7741 tgttagaaaa atagcgctct cgggatgcat ttttgtagaa caaaaaagaa gtatagattc + 7801 tttgttggta aaatagcgct ctcgcgttgc atttctgttc tgtaaaaatg cagctcagat + 7861 tctttgtttg aaaaattagc gctctcgcgt tgcatttttg ttttacaaaa atgaagcaca + 7921 gattcttcgt tggtaaaata gcgctttcgc gttgcatttc tgttctgtaa aaatgcagct + 7981 cagattcttt gtttgaaaaa ttagcgctct cgcgttgcat ttttgttcta caaaatgaag + 8041 cacagatgct tcgttgct // diff --git a/scripts/BioJSON-master/testfiles/sequence.gb b/scripts/BioJSON-master/testfiles/sequence.gb index cbf41e01..e2ce1d7d 100644 --- a/scripts/BioJSON-master/testfiles/sequence.gb +++ b/scripts/BioJSON-master/testfiles/sequence.gb @@ -7,8 +7,8 @@ KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; - Actinopterygii; Neopterygii; Teleostei; Ostariophysi; - Cypriniformes; Cyprinidae; Danio. + Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; + Cyprinidae; Danio. REFERENCE 1 (bases 1 to 1466) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., @@ -18,16 +18,16 @@ REFERENCE 1 (bases 1 to 1466) Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., - Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., - McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., - Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., - Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., - Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., - Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., - Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., - Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., - Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., - Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. + Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., + Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., + Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., + Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., + Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., + Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., + Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., + Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., + Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., + Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences @@ -50,12 +50,12 @@ COMMENT Contact: MGC help desk Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. - Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 165 Row: c Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37748472. + pydna ldseguid=_GHnVotdYSxAKX2bAUIa10ZZDhE 2024-06-11T18:53:28 FEATURES Location/Qualifiers source 1..1466 /organism="Danio rerio" @@ -87,10 +87,10 @@ FEATURES Location/Qualifiers /protein_id="AAH68339.1" /db_xref="GeneID:336121" /db_xref="ZFIN:ZDB-GENE-030804-3" - /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP - TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYIS - AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" -ORIGIN + /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT + EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA + ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" +ORIGIN 1 gtggactgtt gttctgtgtg gaaatacatc tgctaaaaca gcgcgatggc tgaccagttg 61 acagaagagc agatcgccga attcaaagag gctttctcac tctttgataa agacggtgat 121 ggtacaatta ctaccaaaga gttaggtact gtcatgcgct cacttgggca gaatcccaca @@ -117,4 +117,3 @@ ORIGIN 1381 aggatagcac tgggatgaga cctctgtcaa taaaactaaa gttaattaaa gttctcttga 1441 atgacaaaaa aaaaaaaaaa aaaaaa // - diff --git a/scripts/YEp24PGK_XK/AF016889.gb b/scripts/YEp24PGK_XK/AF016889.gb index 11148717..578df6b8 100755 --- a/scripts/YEp24PGK_XK/AF016889.gb +++ b/scripts/YEp24PGK_XK/AF016889.gb @@ -6,7 +6,7 @@ KEYWORDS . SOURCE Cloning vector pWSK29 ORGANISM Cloning vector pWSK29 other sequences; artificial sequences; vectors. -REFERENCE 1 (sites) +REFERENCE 1 AUTHORS Wang,R.F. and Kushner,S.R. TITLE Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli @@ -17,6 +17,7 @@ REFERENCE 2 (bases 1 to 5434) TITLE Direct Submission JOURNAL Submitted (01-AUG-1997) Genetics, University of Georgia, Life Sciences Bldg., Athens, GA 30602, USA +COMMENT pydna cdseguid=nRF3y2ySM5lxRpoQ9P6nWBC5JvI 2024-06-11T18:53:17 FEATURES Location/Qualifiers source 1..5434 /organism="Cloning vector pWSK29" @@ -34,12 +35,12 @@ FEATURES Location/Qualifiers /product="beta-lactamase" /protein_id="AAB81041.1" /db_xref="GI:2522427" - /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY - IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE - YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL - DRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL - LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA - EIGASLIKHW" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" misc_difference 519 /note="pBluescript II SK(+)" /replace="a" @@ -63,12 +64,12 @@ FEATURES Location/Qualifiers /product="replication initiation protein" /protein_id="AAB81042.1" /db_xref="GI:2522428" - /translation="MSELVVFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRK - ERTVSFTYNQYAQMMNISRENAYGVLAKATRELMTRTVEIRNPLVKGFEIFQWTNYAK - FSSEKLELVFSEEILPYLFQLKKFIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHK - ANIEISLDEFKFMLMLENNYHEFKRLNQWVLKPISKDLNTYSNMKLVVDKRGRPTDTL - IFQVELDRQMDLVTELENNQIKMNGDKIPTTITSDSYLHNGLRKTLHDALTAKIQLTS - FEAKFLSDMQSKYDLNGSFSWLTQKQRTTLENILAKYGRI" + /translation="MSELVVFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRKE + RTVSFTYNQYAQMMNISRENAYGVLAKATRELMTRTVEIRNPLVKGFEIFQWTNYAKFS + SEKLELVFSEEILPYLFQLKKFIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHKANI + EISLDEFKFMLMLENNYHEFKRLNQWVLKPISKDLNTYSNMKLVVDKRGRPTDTLIFQV + ELDRQMDLVTELENNQIKMNGDKIPTTITSDSYLHNGLRKTLHDALTAKIQLTSFEAKF + LSDMQSKYDLNGSFSWLTQKQRTTLENILAKYGRI" misc_difference 4376 /note="pSC101" /replace="g" @@ -87,7 +88,7 @@ FEATURES Location/Qualifiers misc_feature 5271..5431 /note="originates from pLG339; contains portion of tn903 (kanamycin resistance transposon)" -ORIGIN +ORIGIN 1 tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag attatcaaaa 61 aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat ctaaagtata 121 tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc tatctcagcg diff --git a/scripts/YEp24PGK_XK/KC562906.gb b/scripts/YEp24PGK_XK/KC562906.gb index f9396d49..a14c52a1 100755 --- a/scripts/YEp24PGK_XK/KC562906.gb +++ b/scripts/YEp24PGK_XK/KC562906.gb @@ -11,6 +11,7 @@ REFERENCE 1 (bases 1 to 9637) TITLE Direct Submission JOURNAL Submitted (01-FEB-2013) Department of Biology, University of Minho, Campus de Gualtar, Braga 4710-051, Portugal +COMMENT pydna cdseguid=3gLnkffPKDbqg3w0z9b38bANZR0 2024-06-11T18:53:17 FEATURES Location/Qualifiers source 1..9637 /organism="Cloning vector YEp24PGK" @@ -27,11 +28,11 @@ FEATURES Location/Qualifiers /product="URA3" /protein_id="AGE61868.1" /db_xref="GI:448967491" - /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKEL - LELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVK - LQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLS - TGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYR - TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN" + /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL + ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ + YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGE + YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDD + VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN" promoter 3452..4934 /note="from Saccharomyces cerevisiae PGK1" terminator 4941..5305 @@ -46,14 +47,13 @@ FEATURES Location/Qualifiers /product="tetracyclin resistance protein" /protein_id="AGE61866.1" /db_xref="GI:448967489" - /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASH - YGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAG - RIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLH - APFLAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTV - FFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGE - KQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQG - QLQGSLAALTSLTSITGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSR - ATST" + /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY + GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI + VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF + LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM + QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII + AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL + AALTSLTSITGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST" gene complement(8572..9432) /gene="bla" CDS complement(8572..9432) @@ -64,13 +64,13 @@ FEATURES Location/Qualifiers /product="beta-lactamase" /protein_id="AGE61867.1" /db_xref="GI:448967490" - /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY - IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE - YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL - DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL - LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA - EIGASLIKHW" -ORIGIN + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" +ORIGIN 1 gaattctgaa ccagtcctaa aacgagtaaa taggaccggc aattcttcaa gcaataaaca 61 ggaataccaa ttattaaaag ataacttagt cagatcgtac aataaagcta gctttgaaga 121 aaaatgcgcc ttattcaatc tttgctataa aaaatggccc aaaatctcac attggaagac @@ -233,4 +233,3 @@ ORIGIN 9541 atttccccga aaagtgccac ctgacgtcta agaaaccatt attatcatga cattaaccta 9601 taaaaatagg cgtatcacga ggccctttcg tcttcaa // - diff --git a/scripts/YEp24PGK_XK/YEp24PGK_XK.gb b/scripts/YEp24PGK_XK/YEp24PGK_XK.gb index 84ae342b..c07032a7 100755 --- a/scripts/YEp24PGK_XK/YEp24PGK_XK.gb +++ b/scripts/YEp24PGK_XK/YEp24PGK_XK.gb @@ -3,9 +3,10 @@ DEFINITION . ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=Rszaoc76OKSdw6Q78zj2RZzmR0I 2024-06-11T18:43:04 FEATURES Location/Qualifiers rep_origin 530..1690 /note="2 micron origin" @@ -13,8 +14,8 @@ FEATURES Location/Qualifiers /gene="URA3" CDS 2507..3310 /product="URA3" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /db_xref="GI:448967491" /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ @@ -31,8 +32,8 @@ FEATURES Location/Qualifiers /gene="tet" CDS 7178..8368 /product="tetracyclin resistance protein" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /note="pBR322 marker" /db_xref="GI:448967489" /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY @@ -48,8 +49,8 @@ FEATURES Location/Qualifiers /gene="bla" CDS complement(10387..11247) /product="beta-lactamase" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /note="ampicillin resistance protein" /db_xref="GI:448967490" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI @@ -252,4 +253,4 @@ ORIGIN 11281 tcagggttat tgtctcatga gcggatacat atttgaatgt atttagaaaa ataaacaaat 11341 aggggttccg cgcacatttc cccgaaaagt gccacctgac gtctaagaaa ccattattat 11401 catgacatta acctataaaa ataggcgtat cacgaggccc tttcgtcttc aa -// \ No newline at end of file +// diff --git a/scripts/YEp24PGK_XK/Z72979.gb b/scripts/YEp24PGK_XK/Z72979.gb index ebf3fcc7..b7746dcd 100755 --- a/scripts/YEp24PGK_XK/Z72979.gb +++ b/scripts/YEp24PGK_XK/Z72979.gb @@ -1,6 +1,6 @@ LOCUS Z72979 3140 bp DNA linear PLN 11-AUG-1997 DEFINITION S.cerevisiae chromosome VII reading frame ORF YGR194c. -ACCESSION Z72979 Y13135 +ACCESSION Z72979 VERSION Z72979.1 GI:1323344 KEYWORDS . SOURCE Saccharomyces cerevisiae (baker's yeast) @@ -19,6 +19,7 @@ REFERENCE 2 (bases 1 to 3140) European yeast chromosome VII sequencing project. MIPS at the Max-Planck-Institut fuer Biochemie, Am Klopferspitz 18a D-82152 Martinsried, FRG; E-mail: Mewes@mips.embnet.org +COMMENT pydna ldseguid=ExETv-5seNCsdMPGFMcNiPC3sAE 2024-06-11T18:53:17 FEATURES Location/Qualifiers source 1..3140 /organism="Saccharomyces cerevisiae" @@ -36,18 +37,18 @@ FEATURES Location/Qualifiers /db_xref="InterPro:IPR018485" /db_xref="SGD:S000003426" /db_xref="UniProtKB/Swiss-Prot:P42826" - /translation="MLCSVIQRQTREVSNTMSLDSYYLGFDLSTQQLKCLAINQDLKI - VHSETVEFEKDLPHYHTKKGVYIHGDTIECPVAMWLEALDLVLSKYREAKFPLNKVMA - VSGSCQQHGSVYWSSQAESLLEQLNKKPEKDLLHYVSSVAFARQTAPNWQDHSTAKQC - QEFEECIGGPEKMAQLTGSRAHFRFTGPQILKIAQLEPEAYEKTKTISLVSNFLTSIL - VGHLVELEEADACGMNLYDIRERKFSDELLHLIDSSSKDKTIRQKLMRAPMKNLIAGT - ICKYFIEKYGFNTNCKVSPMTGDNLATICSLPLRKNDVLVSLGTSTTVLLVTDKYHPS - PNYHLFIHPTLPNHYMGMICYCNGSLARERIRDELNKERENNYEKTNDWTLFNQAVLD - DSESSENELGVYFPLGEIVPSVKAINKRVIFNPKTGMIEREVAKFKDKRHDAKNIVES - QALSCRVRISPLLSDSNASSQQRLNEDTIVKFDYDESPLRDYLNKRPERTFFVGGASK - NDAIVKKFAQVIGATKGNFRLETPNSCALGGCYKAMWSLLYDSNKIAVPFDKFLNDNF - PWHVMESISDVDNENWDRYNSKIVPLSELEKTLI" -ORIGIN + /translation="MLCSVIQRQTREVSNTMSLDSYYLGFDLSTQQLKCLAINQDLKIV + HSETVEFEKDLPHYHTKKGVYIHGDTIECPVAMWLEALDLVLSKYREAKFPLNKVMAVS + GSCQQHGSVYWSSQAESLLEQLNKKPEKDLLHYVSSVAFARQTAPNWQDHSTAKQCQEF + EECIGGPEKMAQLTGSRAHFRFTGPQILKIAQLEPEAYEKTKTISLVSNFLTSILVGHL + VELEEADACGMNLYDIRERKFSDELLHLIDSSSKDKTIRQKLMRAPMKNLIAGTICKYF + IEKYGFNTNCKVSPMTGDNLATICSLPLRKNDVLVSLGTSTTVLLVTDKYHPSPNYHLF + IHPTLPNHYMGMICYCNGSLARERIRDELNKERENNYEKTNDWTLFNQAVLDDSESSEN + ELGVYFPLGEIVPSVKAINKRVIFNPKTGMIEREVAKFKDKRHDAKNIVESQALSCRVR + ISPLLSDSNASSQQRLNEDTIVKFDYDESPLRDYLNKRPERTFFVGGASKNDAIVKKFA + QVIGATKGNFRLETPNSCALGGCYKAMWSLLYDSNKIAVPFDKFLNDNFPWHVMESISD + VDNENWDRYNSKIVPLSELEKTLI" +ORIGIN 1 ttttgaattt ttccctcgag atgatttaac aataacctag ctctttcaat gctctcttat 61 attctcactg gaaagcgcta atttgatttg tctctctcgt tgctggtcgc tcaccctttc 121 ataaattgtt ttttactctt catttattga ttttactttt tgtcattttc cgaacgggga @@ -102,4 +103,3 @@ ORIGIN 3061 ggtcccactg gtaaaatcta ttaacatata aaaagattta caaaaaaact ttagtgccat 3121 aactacagca ggatcatcat // - diff --git a/scripts/pGUP1-2/GUP1_locus.gb b/scripts/pGUP1-2/GUP1_locus.gb index 4b4cccf4..6c0bdc1d 100755 --- a/scripts/pGUP1-2/GUP1_locus.gb +++ b/scripts/pGUP1-2/GUP1_locus.gb @@ -1,11 +1,12 @@ LOCUS . 3683 bp DNA linear UNK 10-JAN-2013 -DEFINITION GUP1_locus +DEFINITION GUP1_locus. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna ldseguid=2pk-W7lWMNwkVe-mOiV9LiE_rXA 2024-06-11T18:43:07 FEATURES Location/Qualifiers rep_origin complement(383..604) /note="ARS716; Autonomously Replicating Sequence" @@ -36,7 +37,7 @@ FEATURES Location/Qualifiers [Evidence IMP] [PMID 18036137]" /GO_function="GO:0015293 - symporter activity [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL084C" /note="Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative @@ -94,7 +95,7 @@ FEATURES Location/Qualifiers IEA]" /GO_function="GO:0003676 - nucleic acid binding [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL085W" /note="hypothetical protein; mutant has long chronological lifespan; has homology to Staphylococcus aureus nuclease; diff --git a/scripts/pGUP1-2/id.gb b/scripts/pGUP1-2/id.gb index 24197d62..28c966ea 100644 --- a/scripts/pGUP1-2/id.gb +++ b/scripts/pGUP1-2/id.gb @@ -1,11 +1,12 @@ -LOCUS name 9981 bp DNA UNK 01-JAN-1980 +LOCUS name 9981 bp DNA linear UNK 01-JAN-1980 DEFINITION description. ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna ldseguid=b2DEChNCkwy9dW0AnoEgNyJBVyo 2024-06-11T18:43:13 FEATURES Location/Qualifiers misc_feature 40..483 /label="GAL1p" diff --git a/scripts/pGUP1-2/pGREG505.gb b/scripts/pGUP1-2/pGREG505.gb index 269666b7..51a6647f 100755 --- a/scripts/pGUP1-2/pGREG505.gb +++ b/scripts/pGUP1-2/pGREG505.gb @@ -1,110 +1,111 @@ -LOCUS pGREG505 9465 bp ds-DNA circular 15-DEC-2012 -DEFINITION pGREG505 circular +LOCUS pGREG505 9465 bp ds-DNA circular UNK 15-DEC-2012 +DEFINITION pGREG505 circular. ACCESSION pGREG505 VERSION pGREG505 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=cr9QvaW0QQWgiRNmG3W-ebeCQK0 2024-06-11T18:53:34 FEATURES Location/Qualifiers primer_bind 9444..9463 - /label=T3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3597..3614) - /label=M13-fwd - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-fwd" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind 9406..9426 - /label=M13-rev - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-rev" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3568..3588) - /label=T7 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T7" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 8356..9038 - /label=ColE1 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="ColE1 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3775..4081 - /label=F1 ori - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="F1 ori" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3758..4213 - /label=M13 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 3685..3753 - /label=LacZ alpha - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacZ alpha" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_binding 9378..9400 - /label=LacO - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacO" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 1997..2030 - /label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 3499..3532 - /label=LoxP(1) - /ApEinfo_label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP(1)" + /ApEinfo_label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 7599..8261 - /label=AmpR - /ApEinfo_fwdcolor=yellow - /ApEinfo_revcolor=yellow - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="AmpR" + /ApEinfo_fwdcolor="yellow" + /ApEinfo_revcolor="yellow" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 40..483 - /label=GAL1p - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="GAL1p" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 530..562 - /label=rec1 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec1" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 1725..1759 - /label=rec2 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec2" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 565..1724 - /label=HIS3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="HIS3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 aaaagctgga gctcgtttaa acggcgcgcc tagtacggat tagaagccgc cgagcgggtg 61 acagccctcc gaaggaagac tctcctccgt gcgtcctcgt cttcaccggt cgcgttcctg @@ -264,4 +265,4 @@ ORIGIN 9301 acgcaattaa tgtgagttac ctcactcatt aggcacccca ggctttacac tttatgcttc 9361 cggctcctat gttgtgtgga attgtgagcg gataacaatt tcacacagga aacagctatg 9421 accatgatta cgccaagcgc gcaattaacc ctcactaaag ggaac -// \ No newline at end of file +// diff --git a/scripts/pGUP1-2/pGUP1.gb b/scripts/pGUP1-2/pGUP1.gb index 4987280f..532d976c 100644 --- a/scripts/pGUP1-2/pGUP1.gb +++ b/scripts/pGUP1-2/pGUP1.gb @@ -3,9 +3,10 @@ DEFINITION cSEGUID_0R8hr15t-psjHVuuTj_JufGxOPg_2019-08-15T08:24:21.800130. ACCESSION pGUP1_2 VERSION pGUP1_2 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:53:31 FEATURES Location/Qualifiers misc_feature 40..483 /label="GAL1p" @@ -316,4 +317,4 @@ ORIGIN 9841 ctcattaggc accccaggct ttacacttta tgcttccggc tcctatgttg tgtggaattg 9901 tgagcggata acaatttcac acaggaaaca gctatgacca tgattacgcc aagcgcgcaa 9961 ttaaccctca ctaaagggaa c -// \ No newline at end of file +// diff --git a/src/pydna/__init__.py b/src/pydna/__init__.py index de6cffba..6c6a09f3 100644 --- a/src/pydna/__init__.py +++ b/src/pydna/__init__.py @@ -127,7 +127,7 @@ ------------------------ See this repository for a collection of - `examples `_. + `examples `_. """ @@ -139,6 +139,7 @@ import logging.handlers as _handlers import appdirs as _appdirs import configparser as _configparser +import tempfile as _tempfile from pydna._pretty import PrettyTable as _PrettyTable @@ -183,8 +184,15 @@ _parser.read(_ini_path) else: # otherwise it is created with default settings _parser["main"] = default_ini - with open(_ini_path, "w", encoding="utf-8") as f: # TODO needs encoding? - _parser.write(f) + _temp_ini_file = _tempfile.NamedTemporaryFile(dir=_ini_path.parent, delete=False) + _temp_ini_path = _Path(_temp_ini_file.name) + try: + _temp_ini_file.close() + with _temp_ini_path.open("w", encoding="utf-8") as f: # TODO needs encoding? + _parser.write(f) + _temp_ini_path.replace(_ini_path) + finally: + _temp_ini_path.unlink(missing_ok=True) # pydna related environmental variables are set # from pydna.ini if they are not set already diff --git a/src/pydna/_pretty.py b/src/pydna/_pretty.py index a62a3111..8ca75a44 100644 --- a/src/pydna/_pretty.py +++ b/src/pydna/_pretty.py @@ -8,7 +8,9 @@ from prettytable import PrettyTable as _Pt from prettytable import MARKDOWN as _md + from copy import copy as _copy +from typing import List as _List class pretty_str(str): @@ -21,15 +23,15 @@ def _repr_pretty_(self, p, cycle): class PrettyTable(_Pt): """docstring.""" - def lol(self): + def lol(self) -> _List[list]: """docstring.""" return [self._field_names] + self._rows - def __repr__(self): + def __repr__(self) -> str: """docstring.""" return self.get_string() - def _repr_markdown_(self): + def _repr_markdown_(self) -> pretty_str: c = _copy(self) c.set_style(_md) return pretty_str(c.get_string()) diff --git a/src/pydna/amplify.py b/src/pydna/amplify.py index 3cc417d3..3c12854a 100644 --- a/src/pydna/amplify.py +++ b/src/pydna/amplify.py @@ -17,7 +17,7 @@ from pydna.utils import flatten as _flatten # from pydna.utils import memorize as _memorize -from pydna.utils import rc as _rc +from pydna.utils import rc as _rc, shift_feature as _shift_feature from pydna.amplicon import Amplicon as _Amplicon from pydna.primer import Primer as _Primer from pydna.seqrecord import SeqRecord as _SeqRecord @@ -351,6 +351,8 @@ def products(self): feats = self.template[ fp.position - fp._fp : rp.position + rp._fp ].features # Save features covered by primers + shift_amount = len(fp.tail) + feats = [_shift_feature(f, shift_amount, None) for f in feats] tpl = self.template else: continue @@ -429,7 +431,7 @@ def __str__(self): report = __str__ -def pcr(*args, **kwargs): +def pcr(*args, **kwargs) -> _Amplicon: """pcr is a convenience function for the Anneal class to simplify its usage, especially from the command line. If more than one or no PCR product is formed, a ValueError is raised. @@ -521,7 +523,7 @@ def pcr(*args, **kwargs): return anneal_primers.products[0] elif len(anneal_primers.products) == 0: raise ValueError(f"No PCR product! {anneal_primers.report()}") - raise ValueError("PCR not specific! {format(anneal_primers.report()}") + raise ValueError(f"PCR not specific! {format(anneal_primers.report())}") if __name__ == "__main__": diff --git a/src/pydna/assembly.py b/src/pydna/assembly.py index 2e39618c..ec3519c5 100644 --- a/src/pydna/assembly.py +++ b/src/pydna/assembly.py @@ -43,6 +43,7 @@ graph. """ import os as _os +from Bio.SeqFeature import SeqFeature as _SeqFeature from Bio.SeqFeature import ExactPosition as _ExactPosition from Bio.SeqFeature import SimpleLocation as _SimpleLocation from Bio.SeqFeature import CompoundLocation as _CompoundLocation @@ -51,12 +52,19 @@ # from pydna.utils import memorize as _memorize from pydna._pretty import pretty_str as _pretty_str from pydna.contig import Contig as _Contig -from pydna.common_sub_strings import common_sub_strings +from pydna.common_sub_strings import common_sub_strings, Match as _Match -# from pydna.common_sub_strings import terminal_overlap from pydna.dseqrecord import Dseqrecord as _Dseqrecord import networkx as _nx + from copy import deepcopy as _deepcopy +from typing import ( + Callable as _Callable, + Dict as _Dict, + List as _List, + NamedTuple as _NamedTuple, + TypedDict as _TypedDict, +) import itertools as _itertools import logging as _logging @@ -112,36 +120,37 @@ class Assembly(object): # , metaclass=_Memoize): """ - def __init__(self, frags=None, limit=25, algorithm=common_sub_strings): + def __init__( + self, + frags: _List[_Dseqrecord], + limit: int = 25, + algorithm: _Callable[[str, str, int], _List[_Match]] = common_sub_strings, + ) -> None: # Fragments is a string subclass with some extra properties # The order of the fragments has significance - fragments = [] - for f in frags: - fragments.append( - { - "upper": str(f.seq).upper(), - "mixed": str(f.seq), - "name": f.name, - "features": f.features, - "nodes": [], - } - ) + fragments: _List[_FragmentDict] = [ + { + "upper": str(f.seq).upper(), + "mixed": str(f.seq), + "name": f.name, + "features": f.features, + "nodes": [], + } + for f in frags + ] # rcfragments is a dict with fragments as keys and the reverse # complement as value - rcfragments = dict( - ( - f["mixed"], - { - "upper": str(frc.seq).upper(), - "mixed": str(frc.seq), - "name": frc.name, - "features": frc.features, - "nodes": [], - }, - ) + rcfragments: _Dict[str, _FragmentDict] = { + f["mixed"]: { + "upper": str(frc.seq).upper(), + "mixed": str(frc.seq), + "name": frc.name, + "features": frc.features, + "nodes": [], + } for f, frc in zip(fragments, (f.rc() for f in frags)) - ) + } # The nodemap dict holds nodes and their reverse complements nodemap = { "begin": "end", @@ -172,8 +181,8 @@ def __init__(self, frags=None, limit=25, algorithm=common_sub_strings): # case. node = first["upper"][start_in_first : start_in_first + length] - first["nodes"].append((start_in_first, length, node)) - secnd["nodes"].append((start_in_secnd, length, node)) + first["nodes"].append(_NodeTuple(start_in_first, length, node)) + secnd["nodes"].append(_NodeTuple(start_in_secnd, length, node)) # The same node exists between the reverse complements of # first and secnd @@ -184,8 +193,8 @@ def __init__(self, frags=None, limit=25, algorithm=common_sub_strings): start_in_secrc = len(secnd["upper"]) - start_in_secnd - length # noderc is the reverse complement of node noderc = firrc["upper"][start_in_firrc : start_in_firrc + length] - firrc["nodes"].append((start_in_firrc, length, noderc)) - secrc["nodes"].append((start_in_secrc, length, noderc)) + firrc["nodes"].append(_NodeTuple(start_in_firrc, length, noderc)) + secrc["nodes"].append(_NodeTuple(start_in_secrc, length, noderc)) nodemap[node] = noderc # first is also compared to the rc of secnd @@ -193,16 +202,16 @@ def __init__(self, frags=None, limit=25, algorithm=common_sub_strings): for start_in_first, start_in_secrc, length in matches: node = first["upper"][start_in_first : start_in_first + length] - first["nodes"].append((start_in_first, length, node)) - secrc["nodes"].append((start_in_secrc, length, node)) + first["nodes"].append(_NodeTuple(start_in_first, length, node)) + secrc["nodes"].append(_NodeTuple(start_in_secrc, length, node)) start_in_firrc, start_in_secnd = ( len(first["upper"]) - start_in_first - length, len(secnd["upper"]) - start_in_secrc - length, ) noderc = firrc["upper"][start_in_firrc : start_in_firrc + length] - firrc["nodes"].append((start_in_firrc, length, noderc)) - secnd["nodes"].append((start_in_secnd, length, noderc)) + firrc["nodes"].append(_NodeTuple(start_in_firrc, length, noderc)) + secnd["nodes"].append(_NodeTuple(start_in_secnd, length, noderc)) nodemap[node] = noderc # A directed graph class that can store multiedges. @@ -472,7 +481,7 @@ def assemble_circular(self, length_bound=None): reverse=True, ) - def __repr__(self): + def __repr__(self) -> _pretty_str: # https://pyformat.info return _pretty_str( "Assembly\n" @@ -508,6 +517,20 @@ def __repr__(self): ) +class _NodeTuple(_NamedTuple): + start: int + length: int + shared_seq: str # uppercase + + +class _FragmentDict(_TypedDict): + upper: str + mixed: str + name: str + features: _List[_SeqFeature] + nodes: _List[_NodeTuple] + + if __name__ == "__main__": import os as _os diff --git a/src/pydna/codon.py b/src/pydna/codon.py index 127542dc..d89b7774 100644 --- a/src/pydna/codon.py +++ b/src/pydna/codon.py @@ -6,9 +6,9 @@ # https://www.genome.jp/kegg/catalog/org_list.html -weights = {} +from typing import Dict as _Dict -weights["sce"] = { +_sce_weights = { "TTT": 1.0, "TTG": 1.0, "TAT": 1.0, @@ -75,12 +75,16 @@ "CCC": 0.37, } +weights = {"sce": _sce_weights} # PMID: 6390186 # PMID: 11589713 -start = {"sce": {"ATG": 1.000, "TTG": 0.069, "ATA": 0.005}, "eco": {}} +start: _Dict[str, _Dict[str, float]] = { + "sce": {"ATG": 1.000, "TTG": 0.069, "ATA": 0.005}, + "eco": {}, +} # Zhang, S. P., Zubay, G., & Goldman, E. (1991). @@ -95,10 +99,13 @@ "eco": ["AGG", "AGA", "ATA", "CTA", "CGA", "CGG", "CCC", "TCG"], } -stop = {"sce": {"TAA": 0.470, "TAG": 0.230, "TGA": 0.300}, "eco": {}} # +stop: _Dict[str, _Dict[str, float]] = { + "sce": {"TAA": 0.470, "TAG": 0.230, "TGA": 0.300}, + "eco": {}, +} -n_end = { +n_end: _Dict[str, _Dict[str, str]] = { "sce": { "Val": ">30 h", "Met": ">30 h", diff --git a/src/pydna/common_sub_strings.py b/src/pydna/common_sub_strings.py index a5d1c7aa..80dd9691 100644 --- a/src/pydna/common_sub_strings.py +++ b/src/pydna/common_sub_strings.py @@ -16,7 +16,9 @@ # from array import array as _array # import itertools as _itertools from operator import itemgetter as _itemgetter +from typing import List as _List, Tuple as _Tuple +Match = _Tuple[int, int, int] # (x_start, y_start, length) # def _kark_sort(s, SA, n, K): # def radixpass(a, b, r, s, n, k): @@ -312,16 +314,37 @@ # return match -def common_sub_strings(stringx: str, stringy: str, limit=25): +def common_sub_strings(stringx: str, stringy: str, limit: int = 25) -> _List[Match]: + """ + Finds all common substrings between stringx and stringy, and returns + them sorted by length. + + This function is case sensitive. + + Parameters + ---------- + stringx : str + stringy : str + limit : int, optional + + Returns + ------- + list of tuple + [(startx1, starty1, length1),(startx2, starty2, length2), ...] + + startx1 = startposition in x, where substring 1 starts + starty1 = position in y where substring 1 starts + length1 = lenght of substring + """ from pydivsufsort import common_substrings - match = common_substrings(stringx, stringy, limit=limit) - match.sort() - match.sort(key=_itemgetter(2), reverse=True) - return match + matches = common_substrings(stringx, stringy, limit=limit) + matches.sort() + matches.sort(key=_itemgetter(2), reverse=True) + return matches -def terminal_overlap(stringx: str, stringy: str, limit=15): +def terminal_overlap(stringx: str, stringy: str, limit: int = 15) -> _List[Match]: """Finds the the flanking common substrings between stringx and stringy longer than limit. This means that the results only contains substrings that starts or ends at the the ends of stringx and stringy. diff --git a/src/pydna/crispr.py b/src/pydna/crispr.py index 28d21de3..528c9a50 100644 --- a/src/pydna/crispr.py +++ b/src/pydna/crispr.py @@ -29,7 +29,8 @@ class _cas(ABC): def __init__(self, protospacer): self.protospacer = protospacer.upper() self.compsite = re.compile( - f"(?=(?P{protospacer}{self.pam}))|(?=(?P{rc(self.pam)}{rc(protospacer)}))", re.UNICODE + f"(?=(?P{self.protospacer}{self.pam}))|(?=(?P{rc(self.pam)}{rc(self.protospacer)}))", + re.UNICODE, ) @abstractmethod @@ -49,31 +50,33 @@ def __str__(self): class cas9(_cas): """docstring. - |----size----------| - - ---protospacer------ - -fst3 - fst5 |-| - |--------------| - PAM - 5-NNGGAAGAGTAATACACTA-AAANGGNN-3 - ||||||||||||||||||| |||||||| - 3-NNCCTTCTCATTATGTGAT-TTTNCCNN-5 - ||||||||||||||||| ||| - 5-GGAAGAGTAATACACTA-AAAg-u-a-a-g-g Scaffold - ---gRNA spacer--- u-a - u-a - u-a - u-a - a-u - g-u-g - a a - g-c-a - c-g - u-a - a-u - g a tetraloop - a-a + .. code-block:: + + |----size----------| + + ---protospacer------ + -fst3 + fst5 |-| + |--------------| + PAM + 5-NNGGAAGAGTAATACACTA-AAANGGNN-3 + ||||||||||||||||||| |||||||| + 3-NNCCTTCTCATTATGTGAT-TTTNCCNN-5 + ||||||||||||||||| ||| + 5-GGAAGAGTAATACACTA-AAAg-u-a-a-g-g Scaffold + ---gRNA spacer--- u-a + u-a + u-a + u-a + a-u + g-u-g + a a + g-c-a + c-g + u-a + a-u + g a tetraloop + a-a """ scaffold = "GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGG" diff --git a/src/pydna/design.py b/src/pydna/design.py index 1ed9ff1b..644853d3 100755 --- a/src/pydna/design.py +++ b/src/pydna/design.py @@ -24,11 +24,55 @@ from pydna.dseqrecord import Dseqrecord as _Dseqrecord from pydna.primer import Primer as _Primer import logging as _logging +import operator as _operator +from typing import Tuple _module_logger = _logging.getLogger("pydna." + __name__) -def primer_design(template, fp=None, rp=None, limit=13, target_tm=55.0, tm_func=_tm_default, **kwargs): +def _design_primer( + target_tm: float, template: _Dseqrecord, limit: int, tm_func, starting_length: int = 0 +) -> Tuple[float, str]: + """returns a tuple (temp, primer)""" + + if starting_length < limit: + starting_length = limit + + length = starting_length + tlen = len(template) + + tmp = max(0, tm_func(str(template.seq[:length]))) + + p = str(template.seq[:length]) + + if tmp < target_tm: + condition = _operator.le + increment = 1 + else: + condition = _operator.ge + increment = -1 + while condition(tmp, target_tm): + prev_temp = tmp + prev_primer = p + length += increment + p = str(template.seq[:length]) + tmp = tm_func(p) + if length >= tlen: + break + # Never go below the limit + if length < limit: + return template.seq[:limit] + + _module_logger.debug(((p, tmp), (prev_primer, prev_temp))) + if abs(target_tm - tmp) < abs(target_tm - prev_temp): + return p + else: + return prev_primer + + +def primer_design( + template, fp=None, rp=None, limit=13, target_tm=55.0, tm_func=_tm_default, estimate_function=None, **kwargs +): """This function designs a forward primer and a reverse primer for PCR amplification of a given template sequence. @@ -37,12 +81,21 @@ def primer_design(template, fp=None, rp=None, limit=13, target_tm=55.0, tm_func= The optional fp and rp arguments can contain an existing primer for the sequence (either the forward or reverse primer). One or the other primers can be specified, not both (since then there is nothing to design!, use the pydna.amplify.pcr function instead). + The limit argument is the minimum length of the primer. The default value is 13. + If one of the primers is given, the other primer is designed to match in terms of Tm. If both primers are designed, they will be designed to target_tm tm_func is a function that takes an ascii string representing an oligonuceotide as argument and returns a float. Some useful functions can be found in the :mod:`pydna.tm` module, but can be substituted for a custom made function. + estimate_function is a tm_func-like function that is used to get a first guess for the primer design, that is then used as starting + point for the final result. This is useful when the tm_func function is slow to calculate (e.g. it relies on an + external API, such as the NEB primer design API). The estimate_function should be faster than the tm_func function. + The default value is `None`. + To use the default `tm_func` as estimate function to get the NEB Tm faster, you can do: + `primer_design(dseqr, target_tm=55, tm_func=tm_neb, estimate_function=tm_default)`. + The function returns a pydna.amplicon.Amplicon class instance. This object has the object.forward_primer and object.reverse_primer properties which contain the designed primers. @@ -118,21 +171,11 @@ def primer_design(template, fp=None, rp=None, limit=13, target_tm=55.0, tm_func= """ def design(target_tm, template): - """returns a string""" - tmp = 0 - length = limit - tlen = len(template) - p = str(template.seq[:length]) - while tmp < target_tm: - length += 1 - p = str(template.seq[:length]) - tmp = tm_func(p) - if length >= tlen: - break - ps = p[:-1] - tmps = tm_func(str(ps)) - _module_logger.debug(((p, tmp), (ps, tmps))) - return min((abs(target_tm - tmp), p), (abs(target_tm - tmps), ps))[1] + if estimate_function: + first_guess = _design_primer(target_tm, template, limit, estimate_function) + return _design_primer(target_tm, template, limit, tm_func, len(first_guess)) + else: + return _design_primer(target_tm, template, limit, tm_func) if not fp and not rp: _module_logger.debug("no primer given, design forward primer:") @@ -193,7 +236,7 @@ def design(target_tm, template): return prod -def assembly_fragments(f, overlap=35, maxlink=40): +def assembly_fragments(f, overlap=35, maxlink=40, circular=False): """This function return a list of :mod:`pydna.amplicon.Amplicon` objects where primers have been modified with tails so that the fragments can be fused in the order they appear in the list by for example Gibson assembly or homologous @@ -520,6 +563,9 @@ def assembly_fragments(f, overlap=35, maxlink=40): maxlink : int, optional Maximum length of spacer sequences that may be present in f. These will be included in tails for designed primers. + circular : bool, optional + If True, the assembly is circular. If False, the assembly is linear. + Returns ------- seqs : list of :mod:`pydna.amplicon.Amplicon` and other Dseqrecord like objects :mod:`pydna.amplicon.Amplicon` objects @@ -577,6 +623,15 @@ def assembly_fragments(f, overlap=35, maxlink=40): >>> """ + + # Recursive call for circular assemblies + if circular: + fragments = assembly_fragments(f + f[0:1], overlap=overlap, maxlink=maxlink, circular=False) + + if hasattr(fragments[0], "template"): + fragments[0] = _pcr((fragments[-1].forward_primer, fragments[0].reverse_primer), fragments[0].template) + return fragments[:-1] + # sanity check for arguments nf = [item for item in f if len(item) > maxlink] if not all(hasattr(i[0], "template") or hasattr(i[1], "template") for i in zip(nf, nf[1:])): @@ -699,11 +754,19 @@ def assembly_fragments(f, overlap=35, maxlink=40): def circular_assembly_fragments(f, overlap=35, maxlink=40): - fragments = assembly_fragments(f + f[0:1], overlap=overlap, maxlink=maxlink) + """ + Equivalent to `assembly_fragments` with `circular=True`. - if hasattr(fragments[0], "template"): - fragments[0] = _pcr((fragments[-1].forward_primer, fragments[0].reverse_primer), fragments[0].template) - return fragments[:-1] + Deprecated, kept for backward compatibility. Use `assembly_fragments` with `circular=True` instead. + """ + import warnings + + warnings.warn( + "The circular_assembly_fragments function is deprecated. Use assembly_fragments with circular=True instead.", + DeprecationWarning, + stacklevel=2, + ) + return assembly_fragments(f, overlap=overlap, maxlink=maxlink, circular=True) if __name__ == "__main__": diff --git a/src/pydna/dseq.py b/src/pydna/dseq.py index ec9fa96f..b90fa2a1 100644 --- a/src/pydna/dseq.py +++ b/src/pydna/dseq.py @@ -22,7 +22,7 @@ import math as _math from pydna.seq import Seq as _Seq -from Bio.Seq import _translate_str +from Bio.Seq import _translate_str, _SeqAbstractBaseClass from pydna._pretty import pretty_str as _pretty_str from seguid import ldseguid as _ldseguid @@ -36,7 +36,23 @@ from Bio.Restriction import RestrictionBatch as _RestrictionBatch from Bio.Restriction import CommOnly -from typing import Tuple +from typing import ( + TYPE_CHECKING, + List as _List, + Tuple as _Tuple, + Union as _Union, + TypeVar as _TypeVar, + Iterable as _Iterable, +) + +if TYPE_CHECKING: + from Bio.Restriction import AbstractCut as _AbstractCut + + +# To represent any subclass of Dseq +DseqType = _TypeVar("DseqType", bound="Dseq") +EnzymesType = _TypeVar("EnzymesType", _RestrictionBatch, _Iterable["_AbstractCut"], "_AbstractCut") +CutSiteType = _Tuple[_Tuple[int, int], _Union["_AbstractCut", None]] class Dseq(_Seq): @@ -296,25 +312,24 @@ class Dseq(_Seq): def __init__( self, - watson, - crick=None, + watson: _Union[str, bytes], + crick: _Union[str, bytes, None] = None, ovhg=None, - # linear=None, circular=False, pos=0, ): + if isinstance(watson, bytes): + watson = watson.decode("ASCII") + if isinstance(crick, bytes): + crick = crick.decode("ASCII") + if crick is None: - if ovhg is None: - crick = _rc(watson) - ovhg = 0 - try: - self._data = bytes(watson, encoding="ASCII") - except TypeError: - self._data = watson - watson = watson.decode("ASCII") - crick = crick.decode("ASCII") - else: # ovhg given, but no crick strand + if ovhg is not None: raise ValueError("ovhg defined without crick strand!") + crick = _rc(watson) + ovhg = 0 + self._data = bytes(watson, encoding="ASCII") + else: # crick strand given if ovhg is None: # ovhg not given olaps = _common_sub_strings( @@ -322,14 +337,18 @@ def __init__( str(_rc(crick).lower()), int(_math.log(len(watson)) / _math.log(4)), ) - try: - F, T, L = olaps[0] - except IndexError: + if len(olaps) == 0: raise ValueError("Could not anneal the two strands." " Please provide ovhg value") - ovhgs = [ol[1] - ol[0] for ol in olaps if ol[2] == L] - if len(ovhgs) > 1: + + # We extract the positions and length of the first (longest) overlap, since + # common_sub_strings sorts the overlaps by length. + pos_watson, pos_crick, longest_olap_length = olaps[0] + + # We see if there is another overlap of the same length + if any(olap[2] >= longest_olap_length for olap in olaps[1:]): raise ValueError("More than one way of annealing the" " strands. Please provide ovhg value") - ovhg = T - F + + ovhg = pos_crick - pos_watson sns = (ovhg * " ") + _pretty_str(watson) asn = (-ovhg * " ") + _pretty_str(_rc(crick)) @@ -341,9 +360,7 @@ def __init__( else: # ovhg given if ovhg == 0: - if len(watson) == len(crick): - self._data = bytes(watson, encoding="ASCII") - elif len(watson) > len(crick): + if len(watson) >= len(crick): self._data = bytes(watson, encoding="ASCII") else: self._data = bytes( @@ -513,7 +530,7 @@ def from_full_sequence_and_overhangs(cls, full_sequence: str, crick_ovhg: int, w # Use :meth:`looped` to create a circular Dseq object""" # return self._circular - def mw(self): + def mw(self) -> float: """This method returns the molecular weight of the DNA molecule in g/mol. The following formula is used:: @@ -532,7 +549,7 @@ def mw(self): + 79.0 ) - def upper(self): + def upper(self: DseqType) -> DseqType: """Return an upper case copy of the sequence. >>> from pydna.dseq import Dseq @@ -565,7 +582,7 @@ def upper(self): pos=self.pos, ) - def lower(self): + def lower(self: DseqType) -> DseqType: """Return a lower case copy of the sequence. >>> from pydna.dseq import Dseq @@ -597,7 +614,7 @@ def lower(self): pos=self.pos, ) - def find(self, sub, start=0, end=_sys.maxsize): + def find(self, sub: _Union[_SeqAbstractBaseClass, str, bytes], start=0, end=_sys.maxsize) -> int: """This method behaves like the python string method of the same name. Returns an integer, the index of the first occurrence of substring @@ -641,7 +658,7 @@ def find(self, sub, start=0, end=_sys.maxsize): return (_pretty_str(self) + _pretty_str(self)).find(sub, start, end) - def __getitem__(self, sl): + def __getitem__(self, sl: slice) -> "Dseq": """Returns a subsequence. This method is used by the slice notation""" if not self.circular: @@ -682,7 +699,7 @@ def __getitem__(self, sl): return Dseq(w, c, ovhg=0) # , linear=True) - def __eq__(self, other): + def __eq__(self, other: DseqType) -> bool: """Compare to another Dseq object OR an object that implements watson, crick and ovhg properties. This comparison is case insensitive. @@ -778,7 +795,7 @@ def __repr__(self): ) ) - def reverse_complement(self, inplace=False): + def reverse_complement(self) -> "Dseq": """Dseq object where watson and crick have switched places. This represents the same double stranded sequence. @@ -808,7 +825,7 @@ def reverse_complement(self, inplace=False): rc = reverse_complement # alias for reverse_complement - def shifted(self, shift): + def shifted(self: DseqType, shift: int) -> DseqType: """Shifted version of a circular Dseq object.""" if not self.circular: raise TypeError("DNA is not circular.") @@ -818,7 +835,7 @@ def shifted(self, shift): else: return (self[shift:] + self[:shift]).looped() - def looped(self): + def looped(self: DseqType) -> DseqType: """Circularized Dseq object. This can only be done if the two ends are compatible, @@ -859,11 +876,11 @@ def looped(self): """ if self.circular: - return self + return _copy.deepcopy(self) type5, sticky5 = self.five_prime_end() type3, sticky3 = self.three_prime_end() if type5 == type3 and str(sticky5) == str(_rc(sticky3)): - nseq = Dseq.quick( + nseq = self.__class__.quick( self.watson, self.crick[-self.ovhg :] + self.crick[: -self.ovhg], ovhg=0, @@ -875,7 +892,7 @@ def looped(self): else: raise TypeError("DNA cannot be circularized.\n" "5' and 3' sticky ends not compatible!") - def tolinear(self): # pragma: no cover + def tolinear(self: DseqType) -> DseqType: # pragma: no cover """Returns a blunt, linear copy of a circular Dseq object. This can only be done if the Dseq object is circular, otherwise a TypeError is raised. @@ -907,11 +924,11 @@ def tolinear(self): # pragma: no cover ) if not self.circular: raise TypeError("DNA is not circular.\n") - selfcopy = _copy.copy(self) + selfcopy = _copy.deepcopy(self) selfcopy.circular = False return selfcopy # self.__class__(self.watson, linear=True) - def five_prime_end(self): + def five_prime_end(self) -> _Tuple[str, str]: """Returns a tuple describing the structure of the 5' end of the DNA fragment @@ -961,7 +978,7 @@ def five_prime_end(self): type_ = "blunt" return type_, sticky - def three_prime_end(self): + def three_prime_end(self) -> _Tuple[str, str]: """Returns a tuple describing the structure of the 5' end of the DNA fragment @@ -1008,11 +1025,11 @@ def three_prime_end(self): type_ = "blunt" return type_, sticky - def watson_ovhg(self): + def watson_ovhg(self) -> int: """Returns the overhang of the watson strand at the three prime.""" return len(self.watson) - len(self.crick) + self.ovhg - def __add__(self, other): + def __add__(self: DseqType, other: DseqType) -> DseqType: """Simulates ligation between two DNA fragments. Add other Dseq object at the end of the sequence. @@ -1045,24 +1062,24 @@ def __add__(self, other): if self_type == other_type and str(self_tail) == str(_rc(other_tail)): answer = Dseq.quick(self.watson + other.watson, other.crick + self.crick, self.ovhg) elif not self: - answer = _copy.copy(other) + answer = _copy.deepcopy(other) elif not other: - answer = _copy.copy(self) + answer = _copy.deepcopy(self) else: raise TypeError("sticky ends not compatible!") return answer - def __mul__(self, number): + def __mul__(self: DseqType, number: int) -> DseqType: if not isinstance(number, int): raise TypeError("TypeError: can't multiply Dseq by non-int of type {}".format(type(number))) if number <= 0: return self.__class__("") - new = _copy.copy(self) + new = _copy.deepcopy(self) for i in range(number - 1): new += self return new - def _fill_in_five_prime(self, nucleotides): + def _fill_in_five_prime(self: DseqType, nucleotides: str) -> str: stuffer = "" type, se = self.five_prime_end() if type == "5'": @@ -1073,7 +1090,7 @@ def _fill_in_five_prime(self, nucleotides): break return self.crick + stuffer, self.ovhg + len(stuffer) - def _fill_in_three_prime(self, nucleotides): + def _fill_in_three_prime(self: DseqType, nucleotides: str) -> str: stuffer = "" type, se = self.three_prime_end() if type == "5'": @@ -1084,7 +1101,7 @@ def _fill_in_three_prime(self, nucleotides): break return self.watson + stuffer - def fill_in(self, nucleotides=None): + def fill_in(self, nucleotides: _Union[None, str] = None) -> "Dseq": """Fill in of five prime protruding end with a DNA polymerase that has only DNA polymerase activity (such as exo-klenow [#]_) and any combination of A, G, C or T. Default are all four @@ -1141,20 +1158,21 @@ def fill_in(self, nucleotides=None): .. [#] http://en.wikipedia.org/wiki/Klenow_fragment#The_exo-_Klenow_fragment """ - if not nucleotides: + if nucleotides is None: nucleotides = "GATCRYWSMKHBVDN" + nucleotides = set(nucleotides.lower() + nucleotides.upper()) crick, ovhg = self._fill_in_five_prime(nucleotides) watson = self._fill_in_three_prime(nucleotides) return Dseq(watson, crick, ovhg) - def transcribe(self): + def transcribe(self) -> _Seq: return _Seq(self.watson).transcribe() - def translate(self, table="Standard", stop_symbol="*", to_stop=False, cds=False, gap="-"): + def translate(self, table="Standard", stop_symbol="*", to_stop=False, cds=False, gap="-") -> _Seq: return _Seq(_translate_str(str(self), table, stop_symbol, to_stop, cds, gap=gap)) - def mung(self): + def mung(self) -> "Dseq": """ Simulates treatment a nuclease with 5'-3' and 3'-5' single strand specific exonuclease activity (such as mung bean nuclease [#]_) @@ -1197,7 +1215,7 @@ def mung(self): """ return Dseq(self.watson[max(0, -self.ovhg) : min(len(self.watson), len(self.crick) - self.ovhg)]) - def T4(self, nucleotides=None): + def T4(self, nucleotides=None) -> "Dseq": """Fill in five prime protruding ends and chewing back three prime protruding ends by a DNA polymerase providing both 5'-3' DNA polymerase activity and 3'-5' nuclease acitivty @@ -1278,69 +1296,69 @@ def T4(self, nucleotides=None): t4 = T4 # alias for the T4 method. - def exo1_front(self, n=1): + def exo1_front(self: DseqType, n=1) -> DseqType: """5'-3' resection at the start (left side) of the molecule.""" d = _copy.deepcopy(self) d.ovhg += n d.watson = d.watson[n:] return d - def exo1_end(self, n=1): + def exo1_end(self: DseqType, n=1) -> DseqType: """5'-3' resection at the end (right side) of the molecule.""" d = _copy.deepcopy(self) d.crick = d.crick[n:] return d - def no_cutters(self, batch: _RestrictionBatch = None): + def no_cutters(self, batch: _Union[_RestrictionBatch, None] = None) -> _RestrictionBatch: """Enzymes in a RestrictionBatch not cutting sequence.""" - if not batch: + if batch is None: batch = CommOnly ana = batch.search(self) ncut = {enz: sitelist for (enz, sitelist) in ana.items() if not sitelist} return _RestrictionBatch(ncut) - def unique_cutters(self, batch: _RestrictionBatch = None): + def unique_cutters(self, batch: _Union[_RestrictionBatch, None] = None) -> _RestrictionBatch: """Enzymes in a RestrictionBatch cutting sequence once.""" - if not batch: + if batch is None: batch = CommOnly return self.n_cutters(n=1, batch=batch) once_cutters = unique_cutters # alias for unique_cutters - def twice_cutters(self, batch: _RestrictionBatch = None): + def twice_cutters(self, batch: _Union[_RestrictionBatch, None] = None) -> _RestrictionBatch: """Enzymes in a RestrictionBatch cutting sequence twice.""" - if not batch: + if batch is None: batch = CommOnly return self.n_cutters(n=2, batch=batch) - def n_cutters(self, n=3, batch: _RestrictionBatch = None): + def n_cutters(self, n=3, batch: _Union[_RestrictionBatch, None] = None) -> _RestrictionBatch: """Enzymes in a RestrictionBatch cutting n times.""" - if not batch: + if batch is None: batch = CommOnly ana = batch.search(self) ncut = {enz: sitelist for (enz, sitelist) in ana.items() if len(sitelist) == n} return _RestrictionBatch(ncut) - def cutters(self, batch: _RestrictionBatch = None): + def cutters(self, batch: _Union[_RestrictionBatch, None] = None) -> _RestrictionBatch: """Enzymes in a RestrictionBatch cutting sequence at least once.""" - if not batch: + if batch is None: batch = CommOnly ana = batch.search(self) ncut = {enz: sitelist for (enz, sitelist) in ana.items() if sitelist} return _RestrictionBatch(ncut) - def seguid(self): + def seguid(self) -> str: """SEGUID checksum for the sequence.""" if self.circular: cs = _cdseguid(self.watson.upper(), self.crick.upper(), alphabet="{DNA-extended}") else: """docstring.""" - w = f"{self.ovhg*'-'}{self.watson}{'-'*(-self.ovhg+len(self.crick)-len(self.watson))}".upper() - c = f"{'-'*(self.ovhg+len(self.watson)-len(self.crick))}{self.crick}{-self.ovhg*'-'}".upper() + w = f"{self.ovhg * '-'}{self.watson}{'-' * (-self.ovhg + len(self.crick) - len(self.watson))}".upper() + c = f"{'-' * (self.ovhg + len(self.watson) - len(self.crick))}{self.crick}{-self.ovhg * '-'}".upper() cs = _ldseguid(w, c, alphabet="{DNA-extended}") return cs - def isblunt(self): + def isblunt(self) -> bool: """isblunt. Return True if Dseq is linear and blunt and @@ -1380,7 +1398,7 @@ def isblunt(self): """ return self.ovhg == 0 and len(self.watson) == len(self.crick) and not self.circular - def cas9(self, RNA: str): + def cas9(self, RNA: str) -> _Tuple[slice, ...]: """docstring.""" bRNA = bytes(RNA, "ASCII") slices = [] @@ -1391,14 +1409,14 @@ def cas9(self, RNA: str): slices = tuple(slice(x, y, 1) for x, y in zip(cuts, cuts[1:])) return slices - def terminal_transferase(self, nucleotides="a"): + def terminal_transferase(self, nucleotides="a") -> "Dseq": """docstring.""" ovhg = self.ovhg if self.ovhg >= 0: ovhg += len(nucleotides) return Dseq(self.watson + nucleotides, self.crick + nucleotides, ovhg) - def cut(self, *enzymes): + def cut(self: DseqType, *enzymes: EnzymesType) -> _Tuple[DseqType, ...]: """Returns a list of linear Dseq fragments produced in the digestion. If there are no cuts, an empty list is returned. @@ -1448,7 +1466,7 @@ def cut(self, *enzymes): cutsite_pairs = self.get_cutsite_pairs(cutsites) return tuple(self.apply_cut(*cs) for cs in cutsite_pairs) - def cutsite_is_valid(self, cutsite): + def cutsite_is_valid(self, cutsite: CutSiteType) -> bool: """Returns False if: - Cut positions fall outside the sequence (could be moved to Biopython) - Overhang is not double stranded @@ -1480,7 +1498,7 @@ def cutsite_is_valid(self, cutsite): end_of_recognition_site %= len(self) recognition_site = self[start_of_recognition_site:end_of_recognition_site] if len(recognition_site) == 0 or recognition_site.ovhg != 0 or recognition_site.watson_ovhg() != 0: - if enz.scd5 is None: + if enz is None or enz.scd5 is None: return False else: # For enzymes that cut twice, this might be referring to the second one @@ -1497,8 +1515,8 @@ def cutsite_is_valid(self, cutsite): return True - def get_cutsites(self, *enzymes): - """Returns a list of cutsites, represented represented as `((cut_watson, ovhg), enz)`: + def get_cutsites(self: DseqType, *enzymes: EnzymesType) -> _List[CutSiteType]: + """Returns a list of cutsites, represented as `((cut_watson, ovhg), enz)`: - `cut_watson` is a positive integer contained in `[0,len(seq))`, where `seq` is the sequence that will be cut. It represents the position of the cut on the watson strand, using the full @@ -1514,11 +1532,11 @@ def get_cutsites(self, *enzymes): Parameters ---------- - enzymes : Union[_RestrictionBatch,list[_RestrictionType]] + enzymes : Union[_RestrictionBatch,list[_AbstractCut]] Returns ------- - list[tuple[tuple[int,int], _RestrictionType]] + list[tuple[tuple[int,int], _AbstractCut]] Examples -------- @@ -1565,23 +1583,24 @@ def get_cutsites(self, *enzymes): return sorted([cutsite for cutsite in out if self.cutsite_is_valid(cutsite)]) - def left_end_position(self) -> Tuple[int, int]: - """The index in the full sequence of the watson and crick start positions. + def left_end_position(self) -> _Tuple[int, int]: + """ + The index in the full sequence of the watson and crick start positions. full sequence (str(self)) for all three cases is AAA + :: + + AAA AA AAT + TT TTT TTT + Returns (0, 1) Returns (1, 0) Returns (0, 0) - ``` - AAA AA AAT - TT TTT TTT - Returns (0, 1) Returns (1, 0) Returns (0, 0) - ``` """ if self.ovhg > 0: return self.ovhg, 0 return 0, -self.ovhg - def right_end_position(self) -> Tuple[int, int]: + def right_end_position(self) -> _Tuple[int, int]: """The index in the full sequence of the watson and crick end positions. full sequence (str(self)) for all three cases is AAA @@ -1597,7 +1616,7 @@ def right_end_position(self) -> Tuple[int, int]: return len(self) + self.watson_ovhg(), len(self) return len(self), len(self) - self.watson_ovhg() - def get_cut_parameters(self, cut: tuple, is_left: bool): + def get_cut_parameters(self, cut: _Union[CutSiteType, None], is_left: bool) -> _Tuple[int, int, int]: """For a given cut expressed as ((cut_watson, ovhg), enz), returns a tuple (cut_watson, cut_crick, ovhg). @@ -1624,15 +1643,15 @@ def get_cut_parameters(self, cut: tuple, is_left: bool): # In the right end, the overhang does not matter return *self.right_end_position(), self.watson_ovhg() - def apply_cut(self, left_cut, right_cut): + def apply_cut(self, left_cut: CutSiteType, right_cut: CutSiteType) -> "Dseq": """Extracts a subfragment of the sequence between two cuts. For more detail see the documentation of get_cutsite_pairs. Parameters ---------- - left_cut : Union[tuple[tuple[int,int], _RestrictionType], None] - right_cut: Union[tuple[tuple[int,int], _RestrictionType], None] + left_cut : Union[tuple[tuple[int,int], _AbstractCut], None] + right_cut: Union[tuple[tuple[int,int], _AbstractCut], None] Returns ------- @@ -1680,7 +1699,7 @@ def apply_cut(self, left_cut, right_cut): """ if _cuts_overlap(left_cut, right_cut, len(self)): - raise ValueError("Cuts overlap") + raise ValueError("Cuts by {} {} overlap.".format(left_cut[1], right_cut[1])) left_watson, left_crick, ovhg_left = self.get_cut_parameters(left_cut, True) right_watson, right_crick, _ = self.get_cut_parameters(right_cut, False) @@ -1691,7 +1710,9 @@ def apply_cut(self, left_cut, right_cut): ovhg=ovhg_left, ) - def get_cutsite_pairs(self, cutsites): + def get_cutsite_pairs( + self, cutsites: _List[CutSiteType] + ) -> _List[_Tuple[_Union[None, CutSiteType], _Union[None, CutSiteType]]]: """Returns pairs of cutsites that render the edges of the resulting fragments. A fragment produced by restriction is represented by a tuple of length 2 that @@ -1707,11 +1728,11 @@ def get_cutsite_pairs(self, cutsites): Parameters ---------- - cutsites : list[tuple[tuple[int,int], _RestrictionType]] + cutsites : list[tuple[tuple[int,int], _AbstractCut]] Returns ------- - list[tuple[tuple[tuple[int,int], _RestrictionType]|None],tuple[tuple[int,int], _RestrictionType]|None] + list[tuple[tuple[tuple[int,int], _AbstractCut]|None],tuple[tuple[int,int], _AbstractCut]|None] Examples -------- diff --git a/src/pydna/dseqrecord.py b/src/pydna/dseqrecord.py index 2cce8923..cfeb2815 100644 --- a/src/pydna/dseqrecord.py +++ b/src/pydna/dseqrecord.py @@ -131,21 +131,12 @@ def __init__( self, record, *args, - # linear=None, circular=None, n=5e-14, # mol ( = 0.05 pmol) **kwargs, ): _module_logger.info("### Dseqrecord initialized ###") - # _module_logger.info("argument linear = %s", linear) _module_logger.info("argument circular = %s", circular) - - # if not (linear is None and circular is None): - # circular = (bool(circular) and bool(linear) ^ bool(circular) - # or linear is False and circular is None) - # linear = not circular - - # _module_logger.info("linear = %s", linear) _module_logger.info("circular = %s", circular) if isinstance(record, str): @@ -248,20 +239,12 @@ def from_SeqRecord( cls, record: _SeqRecord, *args, - # linear=True, - circular=False, + circular=None, n=5e-14, **kwargs, ): obj = cls.__new__(cls) # Does not call __init__ obj._per_letter_annotations = record._per_letter_annotations - obj.seq = _Dseq.quick( - str(record.seq), - _rc(str(record.seq)), - ovhg=0, - # linear=linear, - circular=circular, - ) obj.id = record.id obj.name = record.name obj.description = record.description @@ -271,14 +254,11 @@ def from_SeqRecord( obj.features = record.features obj.map_target = None obj.n = n + if circular is None: + circular = record.annotations.get("topology") == "circular" + obj.seq = _Dseq.quick(str(record.seq), _rc(str(record.seq)), ovhg=0, circular=circular) return obj - # @property - # def linear(self): - # """The linear property can not be set directly. - # Use :meth:`looped` or :meth:`tolinear`""" - # return self.seq.linear - @property def circular(self): """The circular property can not be set directly. @@ -502,15 +482,12 @@ def format(self, f="gb"): """ - s = super().format(f).strip() - - if f in ("genbank", "gb"): - if self.circular: - return _pretty_str(s[:55] + "circular" + s[63:]) - else: - return _pretty_str(s[:55] + "linear " + s[63:]) + record = _copy.deepcopy(self) + if f in ("genbank", "gb") and self.circular: + record.annotations["topology"] = "circular" else: - return _pretty_str(s).strip() + record.annotations["topology"] = "linear" + return _SeqRecord.format(record, f).strip() def write(self, filename=None, f="gb"): """Writes the Dseqrecord to a file using the format f, which must @@ -881,7 +858,7 @@ def __hash__(self): return hash((str(self.seq).lower(), str(tuple(sorted(self.__dict__.items()))))) def linearize(self, *enzymes): - """Similar to :func:`cut. + """Similar to `:func:cut`. Throws an exception if there is not excactly one cut i.e. none or more than one digestion products. @@ -1118,9 +1095,31 @@ def lower(self): lower.seq = lower.seq.lower() return lower - def orfs(self, minsize=30): + def orfs(self, minsize=300): """docstring.""" - return tuple(Dseqrecord(s) for s in self.seq.orfs(minsize=minsize)) + return tuple(Dseqrecord(self[x:y]) for x, y in self.seq.orfs(minsize=minsize)) + + def orfs_to_features(self, minsize=300): + """docstring.""" + features = [] + for strand, s in ((1, self.seq), (-1, self.seq.rc())): + for x, y in s.orfs(minsize=minsize): + orf = self[x:y] + prt = orf.translate() + features.append( + _SeqFeature( + _SimpleLocation(x, y, strand=strand), + type="CDS", + qualifiers={ + "note": f"{y - x}bp {(y - x) // 3}aa", + "checksum": [orf.seguid() + " (DNA)", prt.seguid() + " (protein)"], + "codon_start": 1, + "transl_table": 11, + "translation": str(prt.seq), + }, + ) + ) + return features def _copy_to_clipboard(self, sequence_format): """docstring.""" @@ -1151,8 +1150,8 @@ def figure(self, feature=0, highlight="\x1b[48;5;11m", plain="\x1b[0m"): ovhg = self.seq.ovhg + len(self.seq.watson) - len(self.seq.crick) - w = f"{self.seq.ovhg*chr(32)}{self.seq.watson}{-ovhg*chr(32)}" - c = f"{-self.seq.ovhg*chr(32)}{self.seq.crick[::-1]}{ovhg*chr(32)}" + w = f"{self.seq.ovhg * chr(32)}{self.seq.watson}{-ovhg * chr(32)}" + c = f"{-self.seq.ovhg * chr(32)}{self.seq.crick[::-1]}{ovhg * chr(32)}" if strand == 1: s1, s2 = w, c diff --git a/src/pydna/fakeseq.py b/src/pydna/fakeseq.py index 7cfa3670..6e164ebd 100755 --- a/src/pydna/fakeseq.py +++ b/src/pydna/fakeseq.py @@ -7,36 +7,41 @@ """docstring.""" -class FakeSeq(object): +class FakeSeq: """docstring.""" - def __init__(self, length, n=50e-15, rf=0): # 50 fmol = 0.05 pmol - self._length = int(length) + def __init__( + self, + length: int, + n: float = 50e-15, # 50 fmol = 0.05 pmol + rf: float = 0.0, + ) -> None: + self._length = length self.n = n self.rf = rf - def m(self): + def m(self) -> float: """Mass of the DNA molecule in grams.""" # M(Da) * n (mol) = g return self.M() * self.n - def M(self): + def M(self) -> float: """M grams/mol.""" return (308.9 * self._length + 79.0) * 2 - def __len__(self): + def __len__(self) -> int: """docstring.""" return self._length - def __lt__(self, other): + def __lt__(self, other) -> bool: """docstring.""" return self._length < len(other) - def __repr__(self): + def __repr__(self) -> str: """docstring.""" return f"FakeSeq({self._length:.1e})" - def __str__(self): + def __str__(self) -> str: """docstring.""" return self.__repr__() diff --git a/src/pydna/genbank.py b/src/pydna/genbank.py index a55473dc..582873a4 100644 --- a/src/pydna/genbank.py +++ b/src/pydna/genbank.py @@ -16,6 +16,7 @@ from pydna.readers import read as _read from Bio import Entrez as _Entrez +from typing import Literal as _Literal, Optional as _Optional import re as _re import os as _os import logging as _logging @@ -26,7 +27,7 @@ # TODO http://httpbin.org/ use for testing? -class Genbank(object): +class Genbank: """Class to facilitate download from genbank. It is easier and quicker to use the :func:`pydna.genbank.genbank` function directly. @@ -46,7 +47,12 @@ class Genbank(object): 1 """ - def __init__(self, users_email: str, *args, tool="pydna", **kwargs): + def __init__( + self, + users_email: str, + *, + tool: str = "pydna", + ) -> None: if not _re.match(r"[A-Z0-9._%+-]+@[A-Z0-9.-]+\.[A-Z]{2,4}", users_email, _re.IGNORECASE): raise ValueError("email address {} is not valid.".format(users_email)) @@ -59,12 +65,18 @@ def __init__(self, users_email: str, *args, tool="pydna", **kwargs): self.email = users_email self.tool = tool - def __repr__(self): + def __repr__(self) -> str: """This method returns a short representation containing the email used to initiate.""" return "GenbankConnection({})".format(self.email) @_memorize("pydna.genbank.Genbank.nucleotide") - def nucleotide(self, item: str, seq_start=None, seq_stop=None, strand=1): + def nucleotide( + self, + item: str, + seq_start: _Optional[int] = None, + seq_stop: _Optional[int] = None, + strand: _Literal[1, 2] = 1, + ) -> _GenbankRecord: """This method downloads a genbank nuclotide record from genbank. This method is cached by default. This can be controlled by editing the **pydna_cached_funcs** environment variable. The best way to do this permanently is to edit the edit the @@ -145,9 +157,6 @@ def nucleotide(self, item: str, seq_start=None, seq_stop=None, strand=1): _Entrez.email = self.email _Entrez.tool = self.tool - seq_start = int(seq_start) if seq_start else None - seq_stop = int(seq_stop) if seq_stop else None - _module_logger.info("Entrez.email %s", self.email) text = _Entrez.efetch( db="nuccore", @@ -164,7 +173,7 @@ def nucleotide(self, item: str, seq_start=None, seq_stop=None, strand=1): return _GenbankRecord(_read(text), item=item, start=seq_start, stop=seq_stop, strand=strand) -def genbank(accession: str = "CS570233.1", *args, **kwargs): +def genbank(accession: str = "CS570233.1", *args, **kwargs) -> _GenbankRecord: """ Download a genbank nuclotide record. diff --git a/src/pydna/myenzymes.py b/src/pydna/myenzymes.py index 944b4572..7ec064c6 100644 --- a/src/pydna/myenzymes.py +++ b/src/pydna/myenzymes.py @@ -15,6 +15,7 @@ """ import os as _os +import re as _re from Bio.Restriction import AllEnzymes as _AllEnzymes from Bio.Restriction import RestrictionBatch as _RestrictionBatch import logging as _logging @@ -38,7 +39,8 @@ except Exception: _module_logger.warning(_traceback.format_exc()) -myenzymes = _RestrictionBatch([e for e in _AllEnzymes if str(e).lower() in _text.lower()]) + +myenzymes = _RestrictionBatch([e for e in _AllEnzymes if str(e).lower() in _re.split(r"\W+", _text.lower())]) if __name__ == "__main__": cache = _os.getenv("pydna_cache") diff --git a/src/pydna/nickase.ipynb b/src/pydna/nickase.ipynb new file mode 100644 index 00000000..386fe8cb --- /dev/null +++ b/src/pydna/nickase.ipynb @@ -0,0 +1,1050 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CCTCAGC\n", + "Initiated nickase enzyme CCTCAGC\n", + "USER enzyme initialized with pattern size: 7\n" + ] + } + ], + "source": [ + "from Bio.Restriction import BbvCI, PacI\n", + "from pydna.user import USER\n", + "from pydna.dseq import Dseq\n", + "import re\n", + "\n", + "BbvCI_site = BbvCI.site\n", + "for key, value in BbvCI.__dict__.items():\n", + " #print(key, value)\n", + " pass\n", + "\n", + "\n", + "class NtBbvCI:\n", + " def __init__(self, enzyme=BbvCI):\n", + " # Copy all the attributes from the enzyme\n", + " for key, value in enzyme.__dict__.items():\n", + " if key in [\"compsite\", \"site\", \"charac\", \"size\", \"fst5\", \"fst3\"]:\n", + " setattr(self, key, value)\n", + "\n", + " self.pattern = self.site\n", + " print(self.pattern)\n", + " self.compsite = re.compile(f\"(?=(?P{self.pattern}))\", re.UNICODE)\n", + " self.ovhgs = list()\n", + "\n", + " print(\"Initiated nickase enzyme\", self.site)\n", + " \n", + "\n", + " def search(self, dna, linear=True):\n", + " \"\"\"\n", + " Search function for a nickase enzyme that returns cut sites in the sense strand only.\n", + "\n", + " Parameters\n", + " ----------\n", + " dna : Dseq\n", + " Dseq object representing the DNA sequence to search for nickase site.\n", + " linear : bool, optional\n", + " If True, the search is performed on the input sequence.\n", + " If False, the search is performed on the sequence + sequence[1:]. (default is True)\n", + "\n", + " Returns\n", + " -------\n", + " list\n", + " A list of the positions of the nickase target sites.\n", + "\n", + " \"\"\"\n", + "\n", + " # Clear overhangs every time the search function is called\n", + " self.ovhgs = list()\n", + " results = list()\n", + " for forward in [False, True]:\n", + " # Not using watson and crick, because the cut coordinates are with respect to the\n", + " # \"full sequence\" (see \"full sequence\" in the cutsite_pairs notebook)\n", + " query_str = str(dna).upper() if forward else str(dna.reverse_complement()).upper()\n", + " matches = list(self.compsite.finditer(query_str))\n", + "\n", + " for mobj in matches:\n", + " cut = mobj.start() + self.fst5 + 1\n", + " self.ovhgs.append(cut - 1)\n", + " print(self.ovhgs[-1])\n", + " if forward:\n", + " results.append(cut)\n", + " else:\n", + " print(len(dna) - cut + self.ovhgs[-1] + 2)\n", + " results.append(len(dna) - cut + self.ovhgs[-1] + 2) \n", + "\n", + " return results\n", + "\n", + "\n", + " @property\n", + " def ovhg(self):\n", + " \"\"\"\n", + " Calculate the overhangs for a nickase enzyme.\n", + " \"\"\"\n", + " if len(self.ovhgs) == 0:\n", + " # This is a placeholder\n", + " return self.fst5 - 1\n", + " else:\n", + " return self.ovhgs.pop(0)\n", + "\n", + " def __repr__(self):\n", + " return f\"NtBbvCI({self.site})\"\n", + "\n", + " def __str__(self):\n", + " return f\"NtBbvCI({self.site})\"\n", + "\n", + "\n", + "nickase = NtBbvCI()\n", + "target = Dseq(\"GCTGAGGCTTAATTAAACCATCAGC\") # \"GCTGAGGCTTAATTAAACCTCAGC\"\n", + "user_enzyme = USER()\n", + "#print(target.get_cutsites(nickase))\n", + "#print(nickase.search(target))\n", + "#print(target.get_cutsites(BbvCI))\n", + "#print(nickase.ovhgs)\n", + "#print(target.reverse_complement())\n", + "#target.cut(nickase)\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[9]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "res_a, res_b = target.cut(PacI)\n", + "res_b\n", + "nickase.search(res_b)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[3]\n" + ] + }, + { + "data": { + "text/plain": [ + "[((2, -3), BbvCI)]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "print(BbvCI.search(target))\n", + "target.get_cutsites(BbvCI)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "20\n", + "26\n", + "[26]\n", + "20\n", + "26\n", + "[((25, 20), NtBbvCI(CCTCAGC))]\n", + "20\n", + "26\n" + ] + }, + { + "data": { + "text/plain": [ + "(Dseq(-25)\n", + " GCTGAGGCTTAATTAAACCATCAGC\n", + " CGACT,\n", + " Dseq(-20)\n", + " \n", + " CCGAATTAATTTGGTAGTCG)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "nickase.fst5 = 2\n", + "print(nickase.search(target))\n", + "print(target.get_cutsites(nickase))\n", + "target.cut(nickase)\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(Dseq(-13)\n", + " GCTGAGGCTTAAT\n", + " CGACTCCGAAT,\n", + " Dseq(-14)\n", + " TAAACCATCAGC\n", + " TAATTTGGTAGTCG)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "target.cut(PacI)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 7\n" + ] + }, + { + "data": { + "text/plain": [ + "[((7, 7), ssUSER(N{6}U))]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "\n", + "\n", + "user_target = Dseq(\"CGTCGCuTTCAGCACGTAGCTAGCGAGCGTAGTCTGACGTGCATC\")\n", + "user_enzyme = USER()\n", + "user_target.get_cutsites(user_enzyme)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Help on class BbvCI in module Bio.Restriction.Restriction:\n", + "\n", + "class BbvCI(NonPalindromic, OneCut, Ov5, Defined, Meth_Dep, Commercially_available, AbstractCut, RestrictionType)\n", + " | BbvCI(name='', bases=(), dct=None)\n", + " | \n", + " | Method resolution order:\n", + " | BbvCI\n", + " | NonPalindromic\n", + " | OneCut\n", + " | Ov5\n", + " | Defined\n", + " | Meth_Dep\n", + " | Commercially_available\n", + " | AbstractCut\n", + " | RestrictionType\n", + " | builtins.type\n", + " | builtins.object\n", + " | \n", + " | Data and other attributes defined here:\n", + " | \n", + " | __annotations__ = {}\n", + " | \n", + " | charac = (2, -2, None, None, 'CCTCAGC')\n", + " | \n", + " | compsite = re.compile('(?=(?PCCTCAGC))|(?=(?PGCTGAGG)...\n", + " | \n", + " | dna = None\n", + " | \n", + " | freq = 16384.0\n", + " | \n", + " | fst3 = -2\n", + " | \n", + " | fst5 = 2\n", + " | \n", + " | id = 3098\n", + " | \n", + " | inact_temp = 65\n", + " | \n", + " | opt_temp = 37\n", + " | \n", + " | ovhg = -3\n", + " | \n", + " | ovhgseq = 'TCA'\n", + " | \n", + " | results = None\n", + " | \n", + " | scd3 = None\n", + " | \n", + " | scd5 = None\n", + " | \n", + " | site = 'CCTCAGC'\n", + " | \n", + " | size = 7\n", + " | \n", + " | substrat = 'DNA'\n", + " | \n", + " | suppl = ('N',)\n", + " | \n", + " | uri = 'https://identifiers.org/rebase:3098'\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from NonPalindromic:\n", + " | \n", + " | is_palindromic() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the enzyme has a palindromic recoginition site.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from OneCut:\n", + " | \n", + " | characteristic() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return a list of the enzyme's characteristics as tuple.\n", + " | \n", + " | The tuple contains the attributes:\n", + " | \n", + " | - fst5 -> first 5' cut ((current strand) or None\n", + " | - fst3 -> first 3' cut (complementary strand) or None\n", + " | - scd5 -> second 5' cut (current strand) or None\n", + " | - scd5 -> second 3' cut (complementary strand) or None\n", + " | - site -> recognition site.\n", + " | \n", + " | cut_once() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the cutting pattern has one cut.\n", + " | \n", + " | True if the enzyme cut the sequence one time on each strand.\n", + " | \n", + " | cut_twice() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the cutting pattern has two cuts.\n", + " | \n", + " | True if the enzyme cut the sequence twice on each strand.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from Ov5:\n", + " | \n", + " | catalyse(dna, linear=True) from Bio.Restriction.Restriction.RestrictionType\n", + " | List the sequence fragments after cutting dna with enzyme.\n", + " | \n", + " | Return a tuple of dna as will be produced by using RE to restrict the\n", + " | dna.\n", + " | \n", + " | dna must be a Bio.Seq.Seq instance or a Bio.Seq.MutableSeq instance.\n", + " | \n", + " | If linear is False, the sequence is considered to be circular and the\n", + " | output will be modified accordingly.\n", + " | \n", + " | catalyze = catalyse(dna, linear=True) from Bio.Restriction.Restriction.RestrictionType\n", + " | List the sequence fragments after cutting dna with enzyme.\n", + " | \n", + " | Return a tuple of dna as will be produced by using RE to restrict the\n", + " | dna.\n", + " | \n", + " | dna must be a Bio.Seq.Seq instance or a Bio.Seq.MutableSeq instance.\n", + " | \n", + " | If linear is False, the sequence is considered to be circular and the\n", + " | output will be modified accordingly.\n", + " | \n", + " | compatible_end(batch=None) from Bio.Restriction.Restriction.RestrictionType\n", + " | List all enzymes that produce compatible ends for the enzyme.\n", + " | \n", + " | is_3overhang() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the enzyme produces 3' overhanging ends.\n", + " | \n", + " | True if the enzyme produces 3' overhang sticky end.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_5overhang()\n", + " | - RE.is_blunt()\n", + " | - RE.is_unknown()\n", + " | \n", + " | is_5overhang() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the enzymes produces 5' overhanging ends.\n", + " | \n", + " | True if the enzyme produces 5' overhang sticky end.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_3overhang()\n", + " | - RE.is_blunt()\n", + " | - RE.is_unknown()\n", + " | \n", + " | is_blunt() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if the enzyme produces blunt ends.\n", + " | \n", + " | True if the enzyme produces blunt end.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_3overhang()\n", + " | - RE.is_5overhang()\n", + " | - RE.is_unknown()\n", + " | \n", + " | overhang() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return the type of the enzyme's overhang as string.\n", + " | \n", + " | Can be \"3' overhang\", \"5' overhang\", \"blunt\", \"unknown\".\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from Defined:\n", + " | \n", + " | elucidate() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return a string representing the recognition site and cuttings.\n", + " | \n", + " | Return a representation of the site with the cut on the (+) strand\n", + " | represented as '^' and the cut on the (-) strand as '_'.\n", + " | ie:\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI, KpnI, EcoRV, SnaI\n", + " | >>> EcoRI.elucidate() # 5' overhang\n", + " | 'G^AATT_C'\n", + " | >>> KpnI.elucidate() # 3' overhang\n", + " | 'G_GTAC^C'\n", + " | >>> EcoRV.elucidate() # blunt\n", + " | 'GAT^_ATC'\n", + " | >>> SnaI.elucidate() # NotDefined, cut profile unknown.\n", + " | '? GTATAC ?'\n", + " | >>>\n", + " | \n", + " | is_ambiguous() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if recognition sequence and cut may be ambiguous.\n", + " | \n", + " | True if the sequence recognised and cut is ambiguous,\n", + " | i.e. the recognition site is degenerated AND/OR the enzyme cut outside\n", + " | the site.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_defined()\n", + " | - RE.is_unknown()\n", + " | \n", + " | is_defined() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if recognition sequence and cut are defined.\n", + " | \n", + " | True if the sequence recognised and cut is constant,\n", + " | i.e. the recognition site is not degenerated AND the enzyme cut inside\n", + " | the site.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_ambiguous()\n", + " | - RE.is_unknown()\n", + " | \n", + " | is_unknown() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if recognition sequence is unknown.\n", + " | \n", + " | True if the sequence is unknown,\n", + " | i.e. the recognition site has not been characterised yet.\n", + " | \n", + " | Related methods:\n", + " | \n", + " | - RE.is_defined()\n", + " | - RE.is_ambiguous()\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from Meth_Dep:\n", + " | \n", + " | is_methylable() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if recognition site can be methylated.\n", + " | \n", + " | True if the recognition site is a methylable.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from Commercially_available:\n", + " | \n", + " | buffers(supplier) from Bio.Restriction.Restriction.RestrictionType\n", + " | Return the recommended buffer of the supplier for this enzyme.\n", + " | \n", + " | Not implemented yet.\n", + " | \n", + " | is_comm() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return if enzyme is commercially available.\n", + " | \n", + " | True if RE has suppliers.\n", + " | \n", + " | supplier_list() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return a list of suppliers of the enzyme.\n", + " | \n", + " | suppliers() from Bio.Restriction.Restriction.RestrictionType\n", + " | Print a list of suppliers of the enzyme.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from AbstractCut:\n", + " | \n", + " | all_suppliers() from Bio.Restriction.Restriction.RestrictionType\n", + " | Print all the suppliers of restriction enzyme.\n", + " | \n", + " | equischizomers(batch=None) from Bio.Restriction.Restriction.RestrictionType\n", + " | List equischizomers of the enzyme.\n", + " | \n", + " | Return a tuple of all the isoschizomers of RE.\n", + " | If batch is supplied it is used instead of the default AllEnzymes.\n", + " | \n", + " | Equischizomer: same site, same position of restriction.\n", + " | \n", + " | frequency() from Bio.Restriction.Restriction.RestrictionType\n", + " | Return the theoretically cutting frequency of the enzyme.\n", + " | \n", + " | Frequency of the site, given as 'one cut per x bases' (int).\n", + " | \n", + " | is_equischizomer(other) from Bio.Restriction.Restriction.RestrictionType\n", + " | Test for real isoschizomer.\n", + " | \n", + " | True if other is an isoschizomer of RE, but not an neoschizomer,\n", + " | else False.\n", + " | \n", + " | Equischizomer: same site, same position of restriction.\n", + " | \n", + " | >>> from Bio.Restriction import SacI, SstI, SmaI, XmaI\n", + " | >>> SacI.is_equischizomer(SstI)\n", + " | True\n", + " | >>> SmaI.is_equischizomer(XmaI)\n", + " | False\n", + " | \n", + " | is_isoschizomer(other) from Bio.Restriction.Restriction.RestrictionType\n", + " | Test for same recognition site.\n", + " | \n", + " | True if other has the same recognition site, else False.\n", + " | \n", + " | Isoschizomer: same site.\n", + " | \n", + " | >>> from Bio.Restriction import SacI, SstI, SmaI, XmaI\n", + " | >>> SacI.is_isoschizomer(SstI)\n", + " | True\n", + " | >>> SmaI.is_isoschizomer(XmaI)\n", + " | True\n", + " | \n", + " | is_neoschizomer(other) from Bio.Restriction.Restriction.RestrictionType\n", + " | Test for neoschizomer.\n", + " | \n", + " | True if other is an isoschizomer of RE, else False.\n", + " | Neoschizomer: same site, different position of restriction.\n", + " | \n", + " | isoschizomers(batch=None) from Bio.Restriction.Restriction.RestrictionType\n", + " | List all isoschizomers of the enzyme.\n", + " | \n", + " | Return a tuple of all the equischizomers and neoschizomers of RE.\n", + " | If batch is supplied it is used instead of the default AllEnzymes.\n", + " | \n", + " | neoschizomers(batch=None) from Bio.Restriction.Restriction.RestrictionType\n", + " | List neoschizomers of the enzyme.\n", + " | \n", + " | Return a tuple of all the neoschizomers of RE.\n", + " | If batch is supplied it is used instead of the default AllEnzymes.\n", + " | \n", + " | Neoschizomer: same site, different position of restriction.\n", + " | \n", + " | search(dna, linear=True) from Bio.Restriction.Restriction.RestrictionType\n", + " | Return a list of cutting sites of the enzyme in the sequence.\n", + " | \n", + " | Compensate for circular sequences and so on.\n", + " | \n", + " | dna must be a Bio.Seq.Seq instance or a Bio.Seq.MutableSeq instance.\n", + " | \n", + " | If linear is False, the restriction sites that span over the boundaries\n", + " | will be included.\n", + " | \n", + " | The positions are the first base of the 3' fragment,\n", + " | i.e. the first base after the position the enzyme will cut.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Methods inherited from RestrictionType:\n", + " | \n", + " | __add__(cls, other)\n", + " | Add restriction enzyme to a RestrictionBatch().\n", + " | \n", + " | If other is an enzyme returns a batch of the two enzymes.\n", + " | If other is already a RestrictionBatch add enzyme to it.\n", + " | \n", + " | __eq__(cls, other)\n", + " | Override '==' operator.\n", + " | \n", + " | True if RE and other are the same enzyme.\n", + " | \n", + " | Specifically this checks they are the same Python object.\n", + " | \n", + " | __floordiv__(cls, other)\n", + " | Override '//' operator to use as catalyse method.\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI\n", + " | >>> EcoRI//Seq('GAATTC')\n", + " | (Seq('G'), Seq('AATTC'))\n", + " | \n", + " | Returns RE.catalyse(other).\n", + " | \n", + " | __ge__(cls, other)\n", + " | Compare length of recognition site of two enzymes.\n", + " | \n", + " | Override '>='. a is greater or equal than b if the a site is longer\n", + " | than b site. If their site have the same length sort by alphabetical\n", + " | order of their names.\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI, EcoRV\n", + " | >>> EcoRI.size\n", + " | 6\n", + " | >>> EcoRV.size\n", + " | 6\n", + " | >>> EcoRI >= EcoRV\n", + " | False\n", + " | \n", + " | __gt__(cls, other)\n", + " | Compare length of recognition site of two enzymes.\n", + " | \n", + " | Override '>'. Sorting order:\n", + " | \n", + " | 1. size of the recognition site.\n", + " | 2. if equal size, alphabetical order of the names.\n", + " | \n", + " | __hash__(cls)\n", + " | Implement ``hash()`` method for ``RestrictionType``.\n", + " | \n", + " | Python default is to use ``id(...)``\n", + " | This is consistent with the ``__eq__`` implementation\n", + " | \n", + " | __init__(cls, name='', bases=(), dct=None)\n", + " | Initialize RestrictionType instance.\n", + " | \n", + " | Not intended to be used in normal operation. The enzymes are\n", + " | instantiated when importing the module.\n", + " | See below.\n", + " | \n", + " | __le__(cls, other)\n", + " | Compare length of recognition site of two enzymes.\n", + " | \n", + " | Override '<='. Sorting order:\n", + " | \n", + " | 1. size of the recognition site.\n", + " | 2. if equal size, alphabetical order of the names.\n", + " | \n", + " | __len__(cls)\n", + " | Return length of recognition site of enzyme as int.\n", + " | \n", + " | __lt__(cls, other)\n", + " | Compare length of recognition site of two enzymes.\n", + " | \n", + " | Override '<'. Sorting order:\n", + " | \n", + " | 1. size of the recognition site.\n", + " | 2. if equal size, alphabetical order of the names.\n", + " | \n", + " | __mod__(cls, other)\n", + " | Override '%' operator to test for compatible overhangs.\n", + " | \n", + " | True if a and b have compatible overhang.\n", + " | \n", + " | >>> from Bio.Restriction import XhoI, SalI\n", + " | >>> XhoI % SalI\n", + " | True\n", + " | \n", + " | __ne__(cls, other)\n", + " | Override '!=' operator.\n", + " | \n", + " | Isoschizomer strict (same recognition site, same restriction) -> False\n", + " | All the other-> True\n", + " | \n", + " | WARNING - This is not the inverse of the __eq__ method\n", + " | \n", + " | >>> from Bio.Restriction import SacI, SstI\n", + " | >>> SacI != SstI # true isoschizomers\n", + " | False\n", + " | >>> SacI == SstI\n", + " | False\n", + " | \n", + " | __repr__(cls)\n", + " | Implement repr method.\n", + " | \n", + " | Used with eval or exec will instantiate the enzyme.\n", + " | \n", + " | __rfloordiv__(cls, other)\n", + " | As __floordiv__, with reversed operands.\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI\n", + " | >>> Seq('GAATTC')//EcoRI\n", + " | (Seq('G'), Seq('AATTC'))\n", + " | \n", + " | Returns RE.catalyse(other).\n", + " | \n", + " | __rshift__(cls, other)\n", + " | Override '>>' operator to test for neoschizomers.\n", + " | \n", + " | neoschizomer : same recognition site, different restriction. -> True\n", + " | all the others : -> False\n", + " | \n", + " | >>> from Bio.Restriction import SmaI, XmaI\n", + " | >>> SmaI >> XmaI\n", + " | True\n", + " | \n", + " | __rtruediv__(cls, other)\n", + " | Override division with reversed operands to use as search method.\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI\n", + " | >>> Seq('GAATTC')/EcoRI\n", + " | [2]\n", + " | \n", + " | Returns RE.search(other).\n", + " | \n", + " | __str__(cls)\n", + " | Return the name of the enzyme as string.\n", + " | \n", + " | __truediv__(cls, other)\n", + " | Override '/' operator to use as search method.\n", + " | \n", + " | >>> from Bio.Restriction import EcoRI\n", + " | >>> EcoRI/Seq('GAATTC')\n", + " | [2]\n", + " | \n", + " | Returns RE.search(other).\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Methods inherited from builtins.type:\n", + " | \n", + " | __call__(self, /, *args, **kwargs)\n", + " | Call self as a function.\n", + " | \n", + " | __delattr__(self, name, /)\n", + " | Implement delattr(self, name).\n", + " | \n", + " | __dir__(self, /)\n", + " | Specialized __dir__ implementation for types.\n", + " | \n", + " | __getattribute__(self, name, /)\n", + " | Return getattr(self, name).\n", + " | \n", + " | __instancecheck__(self, instance, /)\n", + " | Check if an object is an instance.\n", + " | \n", + " | __or__(self, value, /)\n", + " | Return self|value.\n", + " | \n", + " | __ror__(self, value, /)\n", + " | Return value|self.\n", + " | \n", + " | __setattr__(self, name, value, /)\n", + " | Implement setattr(self, name, value).\n", + " | \n", + " | __sizeof__(self, /)\n", + " | Return memory consumption of the type object.\n", + " | \n", + " | __subclasscheck__(self, subclass, /)\n", + " | Check if a class is a subclass.\n", + " | \n", + " | __subclasses__(self, /)\n", + " | Return a list of immediate subclasses.\n", + " | \n", + " | mro(self, /)\n", + " | Return a type's method resolution order.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Class methods inherited from builtins.type:\n", + " | \n", + " | __prepare__(...) from Bio.Restriction.Restriction.RestrictionType\n", + " | __prepare__() -> dict\n", + " | used to create the namespace for the class statement\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Static methods inherited from builtins.type:\n", + " | \n", + " | __new__(*args, **kwargs) from builtins.type\n", + " | Create and return a new object. See help(type) for accurate signature.\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Data descriptors inherited from builtins.type:\n", + " | \n", + " | __abstractmethods__\n", + " | \n", + " | __dict__\n", + " | \n", + " | __text_signature__\n", + " | \n", + " | ----------------------------------------------------------------------\n", + " | Data and other attributes inherited from builtins.type:\n", + " | \n", + " | __base__ = \n", + " | Implement methods for enzymes with non-palindromic recognition sites.\n", + " | \n", + " | Palindromic means : the recognition site and its reverse complement are\n", + " | identical.\n", + " | \n", + " | Internal use only. Not meant to be instantiated.\n", + " | \n", + " | \n", + " | __bases__ = (, ...\n", + " | \n", + " | __weakrefoffset__ = 368\n", + "\n" + ] + } + ], + "source": [ + "help(BbvCI)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "a: 2\n", + "b: 1\n" + ] + } + ], + "source": [ + "class Test:\n", + " b = 1\n", + " def __init__(self, a):\n", + " self.a = a\n", + " print(\"a:\", self.a)\n", + " print(\"b:\", self.b)\n", + "\n", + "\n", + "class Test2(Test):\n", + " a = 2\n", + " def __init__(self):\n", + " print(\"a:\", self.a)\n", + " print(\"b:\", self.b)\n", + "\n", + "t = Test2()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "0" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq.from_representation(\"\"\"\n", + " ACGTACGT\\n\n", + " CATGCA\n", + " \"\"\").ovhg" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(Dseq(-13)\n", + " GCTGAGGCTTAAT\n", + " CGACTCCGAAT,\n", + " Dseq(-12)\n", + " TAAACCCAGC\n", + " TAATTTGGGTCG)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "a = Dseq.from_representation(\n", + " \"\"\"\\\n", + " GCTGAGGCTTAATTAAACCCAGC\n", + " CGACTCCGAATTAATTTGGGTCG\n", + " \"\"\"\n", + ")\n", + "res_pac_1 = Dseq.from_representation(\n", + " \"\"\"\\\n", + " GCTGAGGCTTAAT\n", + " CGACTCCGAAT\n", + " \"\"\"\n", + ")\n", + "\n", + "res_pac_2 = Dseq.from_representation(\n", + " \"\"\"\\\n", + " TAAACCCAGC\n", + " TAATTTGGGTCG\n", + " \"\"\"\n", + ")\n", + "\n", + "a.cut(PacI)\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "()" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "res_pac_2.cut(nickase)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "10\n", + "34\n", + "4\n" + ] + }, + { + "data": { + "text/plain": [ + "(Dseq(-4)\n", + " AACC,\n", + " Dseq(-33)\n", + " TCAG..CTGAGGCTTAATTA\n", + " TTGGAGTC..GACT ,\n", + " Dseq(-10)\n", + " \n", + " CCGAATTAAT)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "a = Dseq.from_representation(\n", + " \"\"\"\\\n", + " AACCTCAGCACTATCTTAGCTGAGGCTTAATTA\n", + " TTGGAGTCGTGATAGAATCGACTCCGAATTAAT\n", + " \"\"\"\n", + ")\n", + "\n", + "a.cut(nickase)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "10\n", + "34\n", + "4\n", + "10\n", + "34\n", + "4\n" + ] + }, + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseq(watson=\"\", crick=\"TAATTAAGCC\", ovhg=10) == a.cut(nickase)[-1]\n", + "a.cut(nickase)[0] == Dseq(watson=\"AACC\", crick=\"\", ovhg=0)\n" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/src/pydna/parsers.py b/src/pydna/parsers.py index dff22732..cc138136 100644 --- a/src/pydna/parsers.py +++ b/src/pydna/parsers.py @@ -11,19 +11,36 @@ import re as _re import io as _io import textwrap as _textwrap + from Bio import SeqIO as _SeqIO from pydna.genbankfile import GenbankFile as _GenbankFile from pydna.dseqrecord import Dseqrecord as _Dseqrecord from pydna.primer import Primer as _Primer -from pydna.amplify import pcr as _pcr -from copy import deepcopy as _deepcopy -from Bio.SeqFeature import SeqFeature as _SeqFeature -import xml.etree.ElementTree as _et + +# from pydna.amplify import pcr as _pcr +# from copy import deepcopy as _deepcopy +# from Bio.SeqFeature import SeqFeature as _SeqFeature +# import xml.etree.ElementTree as _et + +try: + from itertools import pairwise as _pairwise +except ImportError: + + def _pairwise(iterable): + # pairwise('ABCDEFG') โ†’ AB BC CD DE EF FG + iterator = iter(iterable) + a = next(iterator, None) + for b in iterator: + yield a, b + a = b + # "^>.+?^(?=$|LOCUS|ID|>|\#)|^(?:LOCUS|ID).+?^//" # "(?:^>.+\n^(?:^[^>]+?)(?=\n\n|>|^LOCUS|ID))|(?:(?:^LOCUS|ID)(?:(?:.|\n)+?)^//)" -gb_fasta_embl_regex = r"(?:>.+\n^(?:^[^>]+?)(?=\n\n|>|LOCUS|ID))|(?:(?:LOCUS|ID)(?:(?:.|\n)+?)^//)" +# gb_fasta_embl_regex = r"(?:>.+\n^(?:^[^>]+?)(?=\n\n|>|LOCUS|ID))|(?:(?:LOCUS|ID)(?:(?:.|\n)+?)^//)" + +gb_fasta_embl_regex = r"(?:^>.+\n^(?:^[^>]+?)(?=\n\n|>|^LOCUS|^ID))|(?:(?:^LOCUS|^ID)(?:(?:.|\n)+?)^//)" # The gb_fasta_embl_regex is meant to be able to extract sequences from # text where sequences are mixed with other contents as well @@ -31,50 +48,80 @@ def extract_from_text(text): - return _re.findall(gb_fasta_embl_regex, _textwrap.dedent(str(text) + "\n\n"), flags=_re.MULTILINE) + """docstring.""" + data = _textwrap.dedent(str(text)) + mos = list(_re.finditer(gb_fasta_embl_regex, data + "\n\n", flags=_re.MULTILINE)) + + class Fakemo(object): + def start(self): + return len(data) + + def end(self): + return 0 + + mofirst = molast = Fakemo() + + gaps = [] + + for mo1, mo2 in _pairwise([mofirst] + mos + [molast]): + gaps.append(data[mo1.end() : mo2.start()]) + return tuple(mo.group(0) for mo in mos), tuple(gaps) -def embl_gb_fasta(text, ds, path=None): - chunks = extract_from_text(text) +def embl_gb_fasta(text): + """Parse embl, genbank or fasta format from text. + + Returns list of Bio.SeqRecord.SeqRecord + + annotations["molecule_type"] + annotations["topology"] + + """ + chunks, gaps = extract_from_text(text) result_list = [] + # topology = "linear" for chunk in chunks: handle = _io.StringIO(chunk) - circular = False + # circular = False + first_line = chunk.splitlines()[0].lower().split() try: parsed = _SeqIO.read(handle, "embl") except ValueError: handle.seek(0) try: parsed = _SeqIO.read(handle, "genbank") - if "circular" in str(parsed.annotations.get("topology")).lower(): - circular = True except ValueError: handle.seek(0) try: parsed = _SeqIO.read(handle, "fasta") except ValueError: - parsed = "" + handle.close() + continue + else: + # hack to pick up molecule_type from FASTA header line + if "protein" in first_line: + parsed.annotations["molecule_type"] = "protein" + parsed.annotations["topology"] = "linear" + else: + parsed.annotations["molecule_type"] = "DNA" + # else: + # if _re.match(r"LOCUS\s+(\S+)\s+(\S+)\s+aa", " ".join(first_line)): + # parsed.annotations["molecule_type"] = "protein" + # parsed.annotations["topology"] = "linear" handle.close() - if "circular" in chunk.splitlines()[0].lower().split(): - # hack to pick up topology from malformed files - circular = True - if parsed: - # TODO: clean up ! - nfs = [_SeqFeature() for f in parsed.features] - for f, nf in zip(parsed.features, nfs): - nf.__dict__ = _deepcopy(f.__dict__) - parsed.features = nfs - if ds and path: - result_list.append(_GenbankFile.from_SeqRecord(parsed, circular=circular, path=path)) - elif ds: - result_list.append(_Dseqrecord.from_SeqRecord(parsed, circular=circular)) - else: - parsed.annotations.update({"molecule_type": "DNA"}) - result_list.append(parsed) - - return result_list + # hack to pick up topology from FASTA and malformed gb files + first_line = chunk.splitlines()[0].lower().split() + parsed.annotations["topology"] = "linear" + if "circular" in first_line: + parsed.annotations["topology"] = "circular" + # assert parsed.annotations.get("topology"), "topology must be set" + assert parsed.annotations.get("molecule_type"), "molecule_type must be set" + if not parsed.annotations.get("molecule_type"): + print(parsed) + result_list.append(parsed) + return tuple(result_list) def parse(data, ds=True): @@ -141,7 +188,18 @@ def parse(data, ds=True): # item was a readable text file, seqences are parsed from the file path = item finally: - sequences.extend(embl_gb_fasta(raw, ds, path)) + newsequences = embl_gb_fasta(raw) + # nfs = [_SeqFeature() for f in parsed.features] + # for f, nf in zip(parsed.features, nfs): + # nf.__dict__ = _deepcopy(f.__dict__) + # parsed.features = nfs + for s in newsequences: + if ds and path: + sequences.append(_GenbankFile.from_SeqRecord(s, path=path)) + elif ds: + sequences.append(_Dseqrecord.from_SeqRecord(s)) + else: + sequences.append(s) return sequences @@ -150,20 +208,6 @@ def parse_primers(data): return [_Primer(x) for x in parse(data, ds=False)] -def parse_assembly_xml(data): - """docstring.""" - root = _et.fromstring(data) - results = [] - for child in root: - if child.tag == "amplicon": - fp, rp, tmpl, *rest = parse(child.text) - results.append(_pcr(_Primer(fp), _Primer(rp), tmpl, limit=min((len(fp), len(rp))))) - elif child.tag == "fragment": - f, *rest = parse(child.text) - results.append(f) - return results - - if __name__ == "__main__": cached = _os.getenv("pydna_cached_funcs", "") _os.environ["pydna_cached_funcs"] = "" @@ -171,123 +215,3 @@ def parse_assembly_xml(data): doctest.testmod(verbose=True, optionflags=doctest.ELLIPSIS) _os.environ["pydna_cached_funcs"] = cached - - data = """\ - - - >f50 14-mer - CCCGTACAAAGGGA - >r50 12-mer - CTGATGCCGCGC - >a - CCCGTACAAAGGGAACATCCACACTTTGGTGAATCGAAGCGCGGCATCAG - - - >f49 19-mer - GATTTCCTTTTGGATACCT - >r49 16-mer - AAGTCTAAGGACCACG - >b - GATTTCCTTTTGGATACCTGAAACAAAGCCCATCGTGGTCCTTAGACTT - - - >f48 13-mer - TCCCTACACCGAC - >r48 16-mer - ATGAAGCTCGTCACAT - >c - TCCCTACACCGACGTACGATGCAACTGTGTGGATGTGACGAGCTTCAT - - - """ - - data = """\ - - - >f50 14-mer - CCCGTACAAAGGGA - >r50 12-mer - CTGATGCCGCGC - >a - CCCGTACAAAGGGAACATCCACACTTTGGTGAATCGAAGCGCGGCATCAG - - - >b - GATTTCCTTTTGGATACCTGAAACAAAGCCCATCGTGGTCCTTAGACTT - - - >f48 13-mer - TCCCTACACCGAC - >r48 16-mer - ATGAAGCTCGTCACAT - >c - TCCCTACACCGACGTACGATGCAACTGTGTGGATGTGACGAGCTTCAT - - - """ - - example = parse_assembly_xml(data) - - # #!/usr/bin/env python3 - # # -*- coding: utf-8 -*- - # """ - # Created on Sat Apr 22 07:39:14 2023 - - # @author: bjorn - # """ - - # import xml.dom.minidom as minidom - - # from lxml import etree - - # ng = """\ - # - # - # - # - # - # - # - # - # - # - # - # - # """ - - # from io import StringIO - - # f = StringIO(ng) - # relaxng_doc = etree.parse(f) - # relaxng = etree.RelaxNG(relaxng_doc) - - # xml = StringIO("""\ - # - # 1 - # 2 - # 3 - # - # """) - - # doc = etree.parse(xml) - # relaxng.validate(doc) - - # doc = minidom.parseString(xml) # or minidom.parse(filename) - # assert doc.documentElement.tagName == "assembly" - # root = doc.getElementsByTagName('assembly')[0] # or doc.documentElement - # items = [n for n in root.childNodes if n.nodeType == doc.ELEMENT_NODE] - - # for item in items: - # print(item.childNodes[0].data) - - # import xml.etree.ElementTree as ET - # xml = """\ - # - # 1 - # 2 - # 3 - # - # """ - # root = ET.fromstring(xml) - # for child in root: - # print(child.tag, child.attrib, child.text) diff --git a/src/pydna/readers.py b/src/pydna/readers.py index 8b376203..93f9023c 100644 --- a/src/pydna/readers.py +++ b/src/pydna/readers.py @@ -38,12 +38,15 @@ def read(data, ds=True): """ - results = _parse(data, ds) try: - results = results.pop() - except IndexError: - raise ValueError(f"No sequences found in data:\n({str(data)[:79]})") - return results + (result,) = _parse(data, ds) + except ValueError as err: + if "too many" in str(err): + print(f"More than one sequence found in data:\n({str(data)[:79]})") + elif "not enough" in str(err): + print(f"No sequence found in data:\n({str(data)[:79]})") + raise + return result def read_primer(data): diff --git a/src/pydna/seq.py b/src/pydna/seq.py index e00b0905..033094c9 100644 --- a/src/pydna/seq.py +++ b/src/pydna/seq.py @@ -10,6 +10,7 @@ """ # from pydna.codon import weights as _weights +from Bio.SeqUtils.ProtParam import ProteinAnalysis from pydna.codon import rare_codons as _rare_codons from pydna.codon import start as _start from pydna.codon import stop as _stop @@ -23,6 +24,7 @@ from Bio.Seq import Seq as _Seq from pydna._pretty import PrettyTable as _PrettyTable +from typing import List as _List, Optional as _Optional, Tuple as _Tuple import logging as _logging _module_logger = _logging.getLogger("pydna." + __name__) @@ -31,21 +33,34 @@ class Seq(_Seq): """docstring.""" - def gc(self): + def translate( + self, + *args, + stop_symbol: str = "*", + to_stop: bool = False, + cds: bool = False, + gap: str = "-", + **kwargs, + ) -> "ProteinSeq": + """Translate..""" + p = super().translate(*args, stop_symbol=stop_symbol, to_stop=to_stop, cds=cds, gap=gap, **kwargs) + return ProteinSeq(p._data) + + def gc(self) -> float: """Return GC content.""" return round(_GC(self._data.upper().decode("ASCII")), 3) - def cai(self, organism="sce"): + def cai(self, organism: str = "sce") -> float: """docstring.""" from pydna.utils import cai as _cai return _cai(self._data.upper().decode("ASCII"), organism=organism) - def rarecodons(self, organism="sce"): + def rarecodons(self, organism: str = "sce") -> _List[slice]: """docstring.""" rare = _rare_codons[organism] s = self._data.upper().decode("ASCII") - slices = [] + slices: _List[slice] = [] for i in range(0, len(self) // 3): x, y = i * 3, i * 3 + 3 trip = s[x:y] @@ -53,15 +68,15 @@ def rarecodons(self, organism="sce"): slices.append(slice(x, y, 1)) return slices - def startcodon(self, organism="sce"): + def startcodon(self, organism: str = "sce") -> _Optional[float]: """docstring.""" return _start[organism].get(self._data.upper().decode("ASCII")[:3]) - def stopcodon(self, organism="sce"): + def stopcodon(self, organism: str = "sce") -> _Optional[float]: """docstring.""" return _stop[organism].get(self._data.upper().decode("ASCII")[-3:]) - def express(self, organism="sce"): + def express(self, organism: str = "sce") -> _PrettyTable: """docstring.""" x = _PrettyTable(["cds", "len", "cai", "gc", "sta", "stp", "n-end"] + _rare_codons[organism] + ["rare"]) val = [] @@ -72,7 +87,9 @@ def express(self, organism="sce"): val.append(self.gc()) val.append(self.startcodon()) val.append(self.stopcodon()) - val.append(_n_end[organism].get(_seq3(self[3:6].translate()))) + val.append( + _n_end[organism].get(_seq3(self[3:6].translate())), + ) s = self._data.upper().decode("ASCII") trps = [s[i * 3 : i * 3 + 3] for i in range(0, len(s) // 3)] tot = 0 @@ -84,23 +101,29 @@ def express(self, organism="sce"): x.add_row(val) return x - def orfs(self, minsize=30): + def orfs2(self, minsize: int = 30) -> _List[str]: """docstring.""" orf = _re.compile(f"ATG(?:...){{{minsize},}}?(?:TAG|TAA|TGA)", flags=_re.IGNORECASE) start = 0 - matches = [] + matches: _List[slice] = [] s = self._data.decode("ASCII") while True: match = orf.search(s, pos=start) if match: matches.append(slice(match.start(), match.end())) - start = start + match.start() + 1 + start = match.start() + 1 else: break return sorted([self[sl] for sl in matches], key=len, reverse=True) - def seguid(self): + def orfs(self, minsize: int = 100) -> _List[_Tuple[int, int]]: + dna = self._data.decode("ASCII") + from pydna.utils import three_frame_orfs + + return [(x, y) for frame, x, y in three_frame_orfs(dna, limit=minsize)] + + def seguid(self) -> str: """Url safe SEGUID [#]_ for the sequence. This checksum is the same as seguid but with base64.urlsafe @@ -135,6 +158,82 @@ def reverse_complement(self): rc = reverse_complement +class ProteinSeq(_Seq): + """docstring.""" + + def translate(self): + raise NotImplementedError("Not defined for protein.") + + def complement(self): + raise NotImplementedError("Not defined for protein.") + + def complement_rna(self): + raise NotImplementedError("Not defined for protein.") + + def reverse_complement(self): + raise NotImplementedError("Not defined for protein.") + + rc = reverse_complement + + def reverse_complement_rna(self): + raise NotImplementedError("Not defined for protein.") + + def transcribe(self): + raise NotImplementedError("Not defined for protein.") + + def back_transcribe(self): + raise NotImplementedError("Not defined for protein.") + + def seguid(self) -> str: + """Url safe SEGUID [#]_ for the sequence. + + This checksum is the same as seguid but with base64.urlsafe + encoding instead of the normal base64. This means that + the characters + and / are replaced with - and _ so that + the checksum can be part of a URL. + + Examples + -------- + >>> from pydna.seq import ProteinSeq + >>> a = ProteinSeq("aa") + >>> a.seguid() + 'lsseguid=gBw0Jp907Tg_yX3jNgS4qQWttjU' + + References + ---------- + .. [#] http://wiki.christophchamp.com/index.php/SEGUID + """ + return _lsseguid(self._data.decode("utf8").upper(), alphabet="{protein-extended}") + + def __getitem__(self, key): + result = super().__getitem__(key) + try: + result.__class__ = self.__class__ + except TypeError: + pass + return result + + def _pa(self) -> ProteinAnalysis: + # breakpoint() + return ProteinAnalysis(self._data.decode("ascii")) + + def molecular_weight(self) -> float: + return self._pa().molecular_weight() + + def pI(self) -> float: + return self._pa().isoelectric_point() + + def instability_index(self) -> float: + """ + Instability index according to Guruprasad et al. + + Value above 40 means the protein is has a short half life. + + Guruprasad K., Reddy B.V.B., Pandit M.W. Protein Engineering 4:155-161(1990). + """ + return self._pa().instability_index() + + if __name__ == "__main__": import os as _os diff --git a/src/pydna/seqrecord.py b/src/pydna/seqrecord.py index 6a179f04..26251e94 100755 --- a/src/pydna/seqrecord.py +++ b/src/pydna/seqrecord.py @@ -18,7 +18,7 @@ from Bio.SeqFeature import SeqFeature as _SeqFeature from pydna._pretty import pretty_str as _pretty_str -# from pydna.utils import seguid as _seg +from pydna.seq import ProteinSeq as _ProteinSeq from pydna.common_sub_strings import common_sub_strings as _common_sub_strings from Bio.Data.CodonTable import TranslationError as _TranslationError @@ -171,6 +171,11 @@ def isorf(self, table=1): else: return True + def translate(self): + """docstring.""" + p = super().translate() + return ProteinSeqRecord(_ProteinSeq(p.seq[:-1])) + def add_colors_to_features_for_ape(self): """Assign colors to features. @@ -674,6 +679,39 @@ def dump(self, filename, protocol=None): return _pretty_str(pth) +class ProteinSeqRecord(SeqRecord): + + def reverse_complement(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + rc = reverse_complement + + def isorf(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def gc(self): + raise NotImplementedError("Not defined for protein.") + + def cai(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def rarecodons(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def startcodon(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def stopcodon(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def express(self, *args, **kwargs): + raise NotImplementedError("Not defined for protein.") + + def __format__(self, format): + """docstring.""" + return _pretty_str(_SeqRecord.__format__(self, format)) + + if __name__ == "__main__": import os as _os diff --git a/src/pydna/sequence_picker.py b/src/pydna/sequence_picker.py index 21b3f2aa..33d63215 100644 --- a/src/pydna/sequence_picker.py +++ b/src/pydna/sequence_picker.py @@ -18,7 +18,7 @@ tool = "pydna" -def genbank_accession(s: str): +def genbank_accession(s: str) -> Dseqrecord: """docstring.""" s = Dseqrecord(s) diff --git a/src/pydna/tm.py b/src/pydna/tm.py index 1641738c..e7938041 100644 --- a/src/pydna/tm.py +++ b/src/pydna/tm.py @@ -14,6 +14,7 @@ import textwrap as _textwrap from pydna._pretty import pretty_str as _pretty_str +import requests # See the documentation for Bio.SeqUtils.MeltingTemp for more details # The 10X Taq Buffer with (NH4)2SO4 is commercialized by companies like @@ -329,6 +330,53 @@ def tmbresluc(primer: str, *args, primerc=500.0, saltc=50, **kwargs): return tm +def tm_neb(primer, conc=0.5, prodcode="q5-0"): + """Calculates a single primers melting temp from NEB. + + Parameters + ---------- + primer1 : str + conc : float + prodcode : str + find product codes on nebswebsite: https://tmapi.neb.com/docs/productcodes + + Returns + ------- + tm : int + primer melting temperature + + """ + + url = "https://tmapi.neb.com/tm" + + params = {"seq1": primer, "conc": conc, "prodcode": prodcode} + + # Mimic a browser request with this headers + headers = { + "User-Agent": "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/91.0.4472.124 Safari/537.36", + "Accept": "text/html,application/xhtml+xml,application/xml;q=0.9,image/webp,*/*;q=0.8", + "Accept-Encoding": "gzip, deflate, br", + "Accept-Language": "en-US,en;q=0.5", + "Connection": "keep-alive", + "Referer": "https://example.com", + } + + try: + res = requests.get(url, params=params, headers=headers) + except requests.exceptions.ConnectionError as e: + raise requests.exceptions.ConnectionError("Could not connect to NEB API.") from e + if res.status_code != 200: + if "error" in res.json(): + raise requests.exceptions.HTTPError(res.status_code, res.json()["error"]) + else: + raise requests.exceptions.HTTPError(res.status_code, res.text) # pragma: no cover + r = res.json() + if r["success"]: + return r["data"]["tm1"] + else: + raise requests.exceptions.HTTPError(r["error"]) + + if __name__ == "__main__": import os as _os diff --git a/src/pydna/user.ipynb b/src/pydna/user.ipynb new file mode 100644 index 00000000..77dd0db0 --- /dev/null +++ b/src/pydna/user.ipynb @@ -0,0 +1,647 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "import re\n", + "from pydna.utils import rc\n", + "from pydna.dseq import Dseq\n", + "from pydna.dseqrecord import Dseqrecord\n", + "from abc import ABC, abstractmethod\n", + "\n", + "class USER2():\n", + " def __init__(self):\n", + " self.compsite = re.compile(\n", + " \"(?=(?P[ACGT]{5}U))|(?=(?PU[ACGT]{5}))\", re.UNICODE\n", + " )\n", + "\n", + " def search(self, dna: Dseq, linear=True):\n", + " \"\"\"\n", + " Search function for USER enzyme.\n", + "\n", + " Parameters\n", + " ----------\n", + " dna : Dseq\n", + " Dseq object representing the DNA sequence to search for USER site.\n", + " linear : bool\n", + " If True, the search is performed on the input sequence.\n", + " If False, the search is performed on the sequence + sequence[1:].\n", + " \n", + " Returns\n", + " -------\n", + " list\n", + " A list of the positions of the USER target sites.\n", + " \"\"\"\n", + " dna = str(dna).upper()\n", + " if linear:\n", + " dna = dna\n", + " else:\n", + " dna = dna + dna[1 : self.size]\n", + " results = []\n", + " for mobj in self.compsite.finditer(dna):\n", + " w, c = mobj.groups()\n", + " if w:\n", + " results.append(mobj.start(\"watson\"))\n", + " if c:\n", + " results.append(mobj.start(\"crick\"))\n", + " return results\n", + "\n", + "\n", + "class CGAAfinder():\n", + " def __init__(self):\n", + " self.compsite = re.compile(\n", + " \"(?=(?PCGAA))|(?=(?PTTCG))\", re.UNICODE\n", + " )\n", + "\n", + " def search(self, dna: Dseq, linear=True):\n", + " \"\"\"\n", + " Search function for USER enzyme.\n", + "\n", + " Parameters\n", + " ----------\n", + " dna : Dseq\n", + " Dseq object representing the DNA sequence to search for USER site.\n", + " linear : bool\n", + " If True, the search is performed on the input sequence.\n", + " If False, the search is performed on the sequence + sequence[1:].\n", + " \n", + " Returns\n", + " -------\n", + " list\n", + " A list of the positions of the USER target sites.\n", + " \"\"\"\n", + " dna = str(dna).upper()\n", + " if linear:\n", + " dna = dna\n", + " else:\n", + " dna = dna + dna[1 : self.size]\n", + " results = []\n", + " for mobj in self.compsite.finditer(dna):\n", + " w, c = mobj.groups()\n", + " if w:\n", + " results.append(mobj.start(\"watson\"))\n", + " if c:\n", + " results.append(mobj.start(\"crick\"))\n", + " return results\n", + "\n", + "\n", + "class USER():\n", + " pattern = \"([ACGT]{5}U)\"\n", + " size = 6\n", + " fst5 = 7 # First 5' cut \n", + " fst3 = None # (there are no cuts in complementary strand)\n", + " site = \"NNNNNU\"\n", + " ovhg = fst5 - 1\n", + "\n", + " def __init__(self):\n", + " self.compsite = re.compile(\n", + " \"(?=(?P[ACGT]{5}U))\", re.UNICODE\n", + " )\n", + "\n", + " def search(self, dna, linear=True):\n", + " # TODO: Deal with circular DNA\n", + " results = []\n", + " for mobj in re.finditer(\"[ACGT]{5}U\", dna.watson):\n", + " print(mobj.start(), mobj.group())\n", + " results.append(mobj.start() + self.fst5)\n", + " \n", + " for mobj in re.finditer(\"U[ACGT]{5}\", dna.crick):\n", + " print(mobj.end(), mobj.group())\n", + " results.append(mobj.end() + self.fst5 - 1)\n", + " \n", + " return results\n", + " \n", + " def __repr__(self):\n", + " return f\"USER({self.site})\"\n", + "\n", + " def __str__(self):\n", + " return f\"USER({self.site})\"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0 AAAAAU\n" + ] + }, + { + "data": { + "text/plain": [ + "[7]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "target = Dseq(\"AAAAAUACGA\", crick=\"TCGTATTTTT\", ovhg=0)\n", + "USER().search(target)\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0 AAAAAU\n" + ] + }, + { + "data": { + "text/plain": [ + "(Dseq(-6)\n", + " AAAAAU,\n", + " Dseq(-10)\n", + " ACGA\n", + " TTTTTATGCT)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "target.cut(USER())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0 AAAAAU\n", + "11 UTCGTA\n" + ] + }, + { + "data": { + "text/plain": [ + "[7, 17]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "target2 = Dseq(\"AAAAAUACGAACGATC\", crick=\"GATCGUTCGTATTTTT\", ovhg=0)\n", + "USER().search(target2)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0 AAAAAU\n", + "11 UTCGTA\n" + ] + }, + { + "data": { + "text/plain": [ + "(Dseq(-6)\n", + " AAAAAU,\n", + " Dseq(-16)\n", + " ACGAACGATC\n", + " TTTTTATGCT,\n", + " Dseq(-6)\n", + " \n", + " UGCTAG)" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "target2.cut(USER())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{'charac': (1, -1, None, None, 'GTCGAC'), 'compsite': re.compile('(?=(?PGTCGAC))'), 'dna': None, 'freq': 4096.0, 'fst3': -1, 'fst5': 1, 'id': 1588, 'inact_temp': 65, 'opt_temp': 37, 'ovhg': -4, 'ovhgseq': 'TCGA', 'results': None, 'scd3': None, 'scd5': None, 'site': 'GTCGAC', 'size': 6, 'substrat': 'DNA', 'suppl': ('B', 'C', 'I', 'J', 'K', 'M', 'N', 'O', 'Q', 'R', 'V', 'X'), 'uri': 'https://identifiers.org/rebase:1588', '__module__': 'Bio.Restriction.Restriction', '__doc__': None}\n" + ] + } + ], + "source": [ + "from Bio.Restriction import SalI\n", + "from Bio.Seq import Seq\n", + "from pydna.dseq import Dseq\n", + "\n", + "#SalI.search(Seq(\"ACGATGCTAGGTCGACGTGAGCATCAGCTGAC\"))\n", + "print(SalI.__dict__)\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-76)\n", + " GTCG..GCCGATCTTT\n", + "TTGCTACAGC..CGGC " + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "result = Dseq.from_representation(\n", + " \"\"\"\\\n", + " GTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT\n", + " TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGC\n", + " \"\"\"\n", + " )\n", + "result" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 4\n", + "USER enzyme initialized with pattern size: 4\n", + "{'size': 4, 'fst5': 5, 'max_size': 11, 'pattern': '([ACGT]{3}U)', 'site': 'N{3}U', 'compsite': re.compile('(?=(?P([ACGT]{3}U)))')}\n" + ] + } + ], + "source": [ + "from pydna.user import USER as us\n", + "\n", + "a = Dseq.from_representation(\n", + " \"\"\"\\\n", + " AACGAuGTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT\n", + " TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuAGAAA\n", + " \"\"\"\n", + " )\n", + "\n", + "#a.get_cutsites(us())\n", + "a.cut(us(4))\n", + "print(us(4).__dict__)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Approach following Bjorn's notes" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 7\n" + ] + } + ], + "source": [ + "from pydna.tm import tm_product\n", + "from pydna.user import USER\n", + "\n", + "def user_products(dseq, user=USER()):\n", + " results = []\n", + " # Iterate through all Us in the forward strand\n", + " for wcut in dseq.get_cutsites(USER()):\n", + " wcut = wcut[0][0] # Get position\n", + " watson_user = dseq[wcut:] # Get the sequence from the cutsite\n", + "\n", + " # Iterate through all Us in the reverse strand\n", + " for ccut in Dseq(dseq.crick).get_cutsites(USER()):\n", + " ccut = ccut[0][0] # Get position\n", + " crick_user = Dseq(dseq.crick)[ccut:] # Get the sequence from the cutsite\n", + " result = Dseq(str(watson_user), crick=str(crick_user), ovhg=wcut)\n", + " print(result.__repr__())\n", + "\n", + " # Calculate the Tm of the double stranded portion\n", + " ds_portion = dseq[wcut:-ccut]\n", + " tm = tm_product(ds_portion)\n", + " print(ds_portion, tm)\n", + " results.append((result, tm))\n", + " \n", + " sorted_results = sorted(results, key=lambda x: x[1], reverse=True)\n", + " return sorted_results\n", + "\n", + "b = Dseq.from_representation(\n", + " \"\"\"\\\n", + " AACGAuGTCGACTTAGATCuCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT\n", + " TTGCTACAGCTGAATCTAGaGTGTCCGAAAAAAGTTCuGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuAGAAA\n", + " \"\"\"\n", + ")\n", + "\n", + "#user_products(b)\n", + "\n", + "\n", + "\n", + "\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 7\n" + ] + }, + { + "data": { + "text/plain": [ + "[Dseq(-76)\n", + " CACA..CAAGaCGG..CTTT\n", + " TTGC..TAGaGTGT..GTTC ]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "us = USER()\n", + "us.products(b)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 7\n", + "USER enzyme initialized with pattern size: 7\n", + "Dseq(-80)\n", + " GTCG..GCCGatgtctcc\n", + "ccctttcaCAGC..CGGC \n", + "GTCGACTTAGATCTCACAGGCTTTTTTCAAGACGGCCTTGAATTCAGTCATTTGGATCCGGCCG 69.2154020719779\n" + ] + }, + { + "data": { + "text/plain": [ + "Dseq(o163)\n", + "tcag..ctcc\n", + "AGTC..gagg" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "pNEB206A_poly = Dseq(\"GCTGAGGGAAAGTCTAGAGGATCCTCTAGATGTCTCCTCAGC\")\n", + "\n", + "plasmid = Dseq.from_representation(\n", + " \"\"\"\n", + " tcagcGCATCTAGGGCGTATCGGATCTATTATTATGAGTTGACGGTCGAGCGACGATCGATGGACTATCGTCGTACGTgctgagggaaagt\n", + " tacagaggAGTCGcgtagatcccgcatagcctagataataatactcaactgccagctcgctgctagctacctgatagcagcatgcaCGACT\n", + " \"\"\"\n", + ")\n", + "\n", + "c = Dseq.from_representation(\n", + " \"\"\"\\\n", + " gggaaaguGTCGACTTAGATCTCACAGGCTTTTTTCAAGACGGCCTTGAATTCAGTCATTTGGATCCGGCCGatgtctcc\n", + " ccctttcaCAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuacagagg\n", + " \"\"\"\n", + ")\n", + "\n", + "## OUTLINE\n", + "# - Digest c with USER\n", + "# - Linearize plasmid with XbaI and Nt.BbvCI nickase (already done)\n", + "# - Assemble the fragments\n", + "\n", + "# Digest c with USER\n", + "insert = user_products(c)[0][0]\n", + "\n", + "(plasmid + insert).looped()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'([ACGT]{5}U)'" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "size = 6\n", + "f\"([ACGT]{{{size-1}}}U)\"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 7\n", + "{'size': 7, 'fst5': 8, 'max_size': 11, 'pattern': '([ACGT]{6}U)', 'site': 'N{6}U', 'compsite': re.compile('(?=(?P([ACGT]{6}U)))')}\n" + ] + } + ], + "source": [ + "us=USER()\n", + "dna = Dseq(\"CGTCGCuCACACGT\")\n", + "dna.get_cutsites(us)\n", + "print(us.__dict__)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'([ACGT]{5,11}U)'" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "size = 6\n", + "max_size = 12\n", + "f\"([ACGT]{{{size-1},{max_size-1}}}U)\"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "USER enzyme initialized with pattern size: 4\n", + "{'size': 4, 'fst5': 5, 'max_size': 11, 'pattern': '([ACGT]{3}U)', 'site': 'N{3}U', 'compsite': re.compile('(?=(?P([ACGT]{3}U)))')}\n" + ] + } + ], + "source": [ + "from pydna.user import USER\n", + "\n", + "us = USER(size=4)\n", + "print(us.__dict__)\n", + "a = Dseq.from_representation(\n", + " \"\"\"\\\n", + " AACGAuGTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT\n", + " TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuAGAAA\n", + " \"\"\"\n", + ")\n", + "result_a = Dseq.from_representation(\n", + " \"\"\"\\\n", + " GTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT\n", + " TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGC\n", + " \"\"\"\n", + " )" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[Dseq(-76)\n", + " GTCG..GCCGATCTTT\n", + " TTGCTACAGC..CGGC ]" + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "us.products(a)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseq(-76)\n", + " GTCG..GCCGATCTTT\n", + "TTGCTACAGC..CGGC " + ] + }, + "execution_count": null, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "result_a" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.6" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/src/pydna/user.py b/src/pydna/user.py new file mode 100644 index 00000000..350e66c3 --- /dev/null +++ b/src/pydna/user.py @@ -0,0 +1,216 @@ +# -*- coding: utf-8 -*- +import re +from pydna.dseq import Dseq +from Bio.Restriction import BbvCI + + +class USER: + """ + A class representing a USER cloning reaction. + In vitro, the USER enzyme recognizes dU bases in DNA sequences and creates + an abasic site (single nucleotide gap). Then, an AP liase cleaves the DNA strand + at the abasic site. Due to the high instability of the short oligonucleotide + upstream of the cleavage site, the oligonucleotide detaches and leaves a 3' overhang. + For optimal USER cloning, sequence upstream of the dU should be 6 to 10 nucleotides long. + + Parameters + ---------- + size : int, optional + The size of the pattern (default is 7). + max_size : int, optional + The maximum size of the pattern (default is 11). + + Examples + -------- + + >>> from pydna.user import USER + >>> from pydna.dseq import Dseq + >>> us=USER() + >>> dna = Dseq("CGTCGCuCACACGT") + >>> + >>> + + """ + + size = 6 + pattern = f"([ACGT]{{{size - 1}}}U)" + site = "N" * (size - 1) + "U" + fst5 = size # First 5' cut + fst3 = None + + def __init__(self, size: int = 7, max_size: int = 11): + """ + Initialize a USER enzyme with a pattern size. + """ + self.size = size + self.fst5 = size + # TODO: Properly implement max_size, requires change in search function (finditer vs match) + self.max_size = max_size + self.pattern = f"([ACGT]{{{size - 1}}}U)" + self.site = f"N{{{size - 1}}}U" + self.compsite = re.compile(f"(?=(?P{self.pattern}))", re.UNICODE) + self.ovhgs = list() + print("USER enzyme initialized with pattern size:", size) + + def search(self, dna, linear=True): + """ + Search function for a USER enzyme that returns cut sites in the sense strand only. + + Parameters + ---------- + dna : Dseq + Dseq object representing the DNA sequence to search for USER site. + linear : bool, optional + If True, the search is performed on the input sequence. + If False, the search is performed on the sequence + sequence[1:]. (default is True) + + Returns + ------- + list + A list of the positions of the USER target sites. + + """ + # TODO: Deal with circular DNA, should not be supported? + # TODO: Should this support subsequent USER sites? i.e. + # 0 10 20 30 40 50 + # 012345678901234567890123456789012345678901234567890 + # + # CGTCGCuTTCAGCACGTuGCTAGCGAGCGTAGTCTGACGTGCATC + # ------u1 -> u1 site recognized, cleaved and oligo detached + # ----------u2 -> u2 site recognized and cleaved. Once u1 is cleaved and the oligo detached, oligo between u1 and u2 is detached + # -----------------u2* -> If u1 is not cleaved, u2* is recognized, cleaved, but oligo may not detach + # + # USER + AP liase should cleave any dU site + # However, spontaneous detachment of the oligonucleotide + # upstream depends on its length. For optimal USER cloning, + # it should be 6 to 10 nucleotides long. + # Should we support this weird use case? -> Finditer + # or should we just return the first cut site? -> Match + # >>> Dseq("CGTCGCuCACACGT") + # + + # Clear overhangs every time the search function is called + self.ovhgs = list() + results = list() + for forward in [True, False]: + # Not using watson and crick, because the cut coordinates are with respect to the + # "full sequence" (see "full sequence" in the cutsite_pairs notebook) + query_str = str(dna).upper() if forward else str(dna.reverse_complement()).upper() + matches = list(self.compsite.finditer(query_str)) + if len(matches) > 1: + raise ValueError(f"Multiple USER sites found in the {('watson' if forward else 'crick')} sequence.") + + for mobj in matches: + cut = mobj.start() + self.fst5 + 1 + self.ovhgs.append(cut - 1) + if forward: + results.append(cut) + else: + results.append( + len(dna) - cut + self.ovhgs[-1] + 2 + ) # - cut + self.ovhgs[-1] = - cut + cut - 1 = -1 ?? + + return results + + @property + def ovhg(self): + """ + Calculate the overhangs for the USER enzyme. + """ + if len(self.ovhgs) == 0: + # This is a placeholder + return self.fst5 - 1 + else: + return self.ovhgs.pop(0) + + def __repr__(self): + return f"ssUSER({self.site})" + + def __str__(self): + return f"ssUSER({self.site})" + + +class NtBbvCI: + def __init__(self, enzyme=BbvCI): + # Copy all the attributes from the enzyme + for key, value in enzyme.__dict__.items(): + if key in ["compsite", "site", "charac", "size", "fst5", "fst3"]: + setattr(self, key, value) + + self.pattern = self.site + self.compsite = re.compile(f"(?=(?P{self.pattern}))", re.UNICODE) + self.ovhgs = list() + + def search(self, dna, linear=True): + """ + Search function for a nickase enzyme that returns cut sites in the sense strand only. + + Parameters + ---------- + dna : Dseq + Dseq object representing the DNA sequence to search for nickase site. + linear : bool, optional + If True, the search is performed on the input sequence. + If False, the search is performed on the sequence + sequence[1:]. (default is True) + + Returns + ------- + list + A list of the positions of the nickase target sites. + + """ + + # Clear overhangs every time the search function is called + self.ovhgs = list() + results = list() + for forward in [False, True]: + # Not using watson and crick, because the cut coordinates are with respect to the + # "full sequence" (see "full sequence" in the cutsite_pairs notebook) + query_str = str(dna).upper() if forward else str(dna.reverse_complement()).upper() + matches = list(self.compsite.finditer(query_str)) + + for mobj in matches: + cut = mobj.start() + self.fst5 + 1 + self.ovhgs.append(cut - 1) + if forward: + results.append(cut) + else: + results.append(len(dna) - cut + self.ovhgs[-1] + 2) + + return results + + @property + def ovhg(self): + """ + Calculate the overhangs for a nickase enzyme. + """ + if len(self.ovhgs) == 0: + # This is a placeholder + return self.fst5 - 1 + else: + return self.ovhgs.pop(0) + + def __repr__(self): + return f"NtBbvCI({self.site})" + + def __str__(self): + return f"NtBbvCI({self.site})" + + +if __name__ == "__main__": + import os as _os + + cached = _os.getenv("pydna_cached_funcs", "") + _os.environ["pydna_cached_funcs"] = "" + import doctest + + doctest.testmod(verbose=True, optionflags=doctest.ELLIPSIS) + _os.environ["pydna_cached_funcs"] = cached + + # Minimal example + target = Dseq("AATTuCCGGaTTAA", "TTAAuCCGGaAATT") + + usr = USER(2) + + for seq in target.cut(usr): + print(repr(seq)) diff --git a/src/pydna/utils.py b/src/pydna/utils.py index 9dfa350b..b42d4696 100644 --- a/src/pydna/utils.py +++ b/src/pydna/utils.py @@ -19,13 +19,12 @@ import collections as _collections import itertools as _itertools from copy import deepcopy as _deepcopy -from typing import Union as _Union import sys as _sys -import re -import itertools import random import subprocess as _subprocess +from bisect import bisect as _bisect +from math import ceil as _ceil from pydna.codon import weights as _weights from pydna.codon import rare_codons as _rare_codons @@ -33,15 +32,58 @@ from Bio.SeqFeature import SimpleLocation as _sl from Bio.SeqFeature import CompoundLocation as _cl +from typing import Union as _Union, TypeVar as _TypeVar, List as _List + +# For functions that take str or bytes as input and return str or bytes as output, matching the input type +StrOrBytes = _TypeVar("StrOrBytes", str, bytes) + _module_logger = _logging.getLogger("pydna." + __name__) _ambiguous_dna_complement.update({"U": "A"}) _complement_table = _maketrans(_ambiguous_dna_complement) +def three_frame_orfs( + dna: str, + limit: int = 100, + startcodons: tuple = ("ATG",), + stopcodons: tuple = ("TAG", "TAA", "TGA"), + # startcodons: tuple[str, ...] = ("ATG",), + # stopcodons: tuple[str, ...] = ("TAG", "TAA", "TGA"), +): + """Overlapping orfs in three frames.""" + # breakpoint() + limit = _ceil(limit / 3) - 1 + dna = dna.upper() + + orfs = [] + + for frame in (0, 1, 2): + + codons = [dna[i : i + 3] for i in range(frame, len(dna), 3)] + + startdindices = [i for i, cd in enumerate(codons) if cd in startcodons] + stopdindices = [i for i, cd in enumerate(codons) if cd in stopcodons] + + for startindex in startdindices: + try: + stopindex = stopdindices[_bisect(stopdindices, startindex)] + except IndexError: + pass + else: + if stopindex - startindex >= limit: + orfs.append((frame, startindex * 3 + frame, (stopindex + 1) * 3 + frame)) + # print(stopindex, startindex, limit) + return orfs + + def shift_location(original_location, shift, lim): """docstring.""" newparts = [] strand = original_location.strand + if lim is None: + if min(original_location) + shift < 0: + raise ValueError("Shift moves location below zero, use a `lim` to loop around if sequence is circular.") + lim = _sys.maxsize for part in original_location.parts: new_start = (part.start + shift) % lim @@ -220,7 +262,7 @@ def open_folder(pth): return "no cache to open." -def rc(sequence: str): +def rc(sequence: StrOrBytes) -> StrOrBytes: """Reverse complement. accepts mixed DNA/RNA @@ -296,7 +338,7 @@ def identifier_from_string(s: str) -> str: return s -def flatten(*args): +def flatten(*args) -> _List: """Flattens an iterable of iterables. Down to str, bytes, bytearray or any of the pydna or Biopython seq objects @@ -668,6 +710,31 @@ def location_boundaries(loc: _Union[_sl, _cl]): return loc.parts[0].start, loc.parts[-1].end +def locations_overlap(loc1: _Union[_sl, _cl], loc2: _Union[_sl, _cl], seq_len): + start1, end1 = location_boundaries(loc1) + start2, end2 = location_boundaries(loc2) + + boundaries1 = [(start1, end1)] + boundaries2 = [(start2, end2)] + + if start1 > end1: + boundaries1 = [ + [start1, end1 + seq_len], + [start1 - seq_len, end1], + ] + if start2 > end2: + boundaries2 = [ + [start2, end2 + seq_len], + [start2 - seq_len, end2], + ] + + for b1, b2 in _itertools.product(boundaries1, boundaries2): + if b1[0] < b2[1] and b1[1] > b2[0]: + return True + + return False + + if __name__ == "__main__": cached = _os.getenv("pydna_cached_funcs", "") _os.environ["pydna_cached_funcs"] = "" diff --git a/tests/AX023560.gb b/tests/AX023560.gb index 72617f83..1c35f613 100644 --- a/tests/AX023560.gb +++ b/tests/AX023560.gb @@ -10,8 +10,8 @@ REFERENCE 1 AUTHORS Barth,G., Juretzek,T. and Mauersberger,S. TITLE Recombinant haploid or diploid yarrowia lipolytica cells for the functional heterologous expression of cytochrome p450 systems - JOURNAL Patent: WO 0003008-A2 15 20-JAN-2000; - UNIV DRESDEN TECH (DE) + JOURNAL Patent: WO 0003008-A2 15 20-JAN-2000; UNIV DRESDEN TECH (DE) +COMMENT pydna ldseguid=lK2adN3XneMRstV7IbyXuM9lXrM 2024-06-11T18:53:23 FEATURES Location/Qualifiers source 1..8601 /organism="synthetic construct" @@ -19,8 +19,7 @@ FEATURES Location/Qualifiers /db_xref="taxon:32630" promoter 8094..8600 /note="Promotor des GAL10-Gens aus Saccharomyces - cerevisiae; - ringf rmig geschlossene DNA aus Saccharomyces + cerevisiae; ringf rmig geschlossene DNA aus Saccharomyces cerevisiae/E. coli auf der Basis des 2 -Plasmid yEP51. Plasmid yEP5117a" ORIGIN diff --git a/tests/GIN11M86.gb b/tests/GIN11M86.gb index 252ec965..4e9e0662 100644 --- a/tests/GIN11M86.gb +++ b/tests/GIN11M86.gb @@ -19,12 +19,13 @@ REFERENCE 2 (bases 1 to 860) AUTHORS Akada,R. TITLE Direct Submission JOURNAL Submitted (02-FEB-1994) Rinji Akada, Faculty of Engineering, - Yamaguchi University, Dept. of Applied Chem. and Chemical Eng.; - 2557 Tokiwadai, Ube, Yamaguchi 755, Japan + Yamaguchi University, Dept. of Applied Chem. and Chemical Eng.; 2557 + Tokiwadai, Ube, Yamaguchi 755, Japan (E-mail:rinji@po.cc.yamaguchi-u.ac.jp, Tel:81-836-35-9932, Fax:81-836-35-9933) COMMENT On Apr 23, 1999 this sequence version replaced gi:457579. Sequence updated (20-Apr-1999). + pydna ldseguid=7AaBcuMevA0H8IU0VqN3CFaAY0E 2024-06-11T18:53:23 FEATURES Location/Qualifiers source 1..860 /organism="Saccharomyces cerevisiae" @@ -39,8 +40,8 @@ FEATURES Location/Qualifiers /gene="GIN11" /experiment="experimental evidence, no additional details recorded" - /note="GIN11 gene; complete sequence, homology to X - element of telomere ARS" + /note="GIN11 gene; complete sequence, homology to X element + of telomere ARS" /citation=[1] /phenotype="growth inhibitory effect when overexpressed" misc_feature 433..444 @@ -54,7 +55,7 @@ ORIGIN 241 acttttaaaa ataagattgc agatcagggc aaaacaagta gcaaatcata gcaagagacc 301 ctgatttttg tgacataaat atttttactt ctgtgttagg ttaacttttt atgtaactgt 361 aaatggaata gagttgaggg gatagtgccc acaagtcaat atgtttattt tgtaaagttg - 421 aaagataatt atttttatgC tCaggtgatt ttggtgttga attttctgta atattaacat + 421 aaagataatt atttttatgc tcaggtgatt ttggtgttga attttctgta atattaacat 481 aagagtaata cattgagtgg ttagtatatg gtgtaaaagt ggtataacgc atgtattaag 541 agcagttata caatatttgg ggccgctgaa tgagatatag atattaaaat gtggataatc 601 atgggcttta tgggtaaatg gaacagggta tagaccactg aggcaagtgc cgtgcataat diff --git a/tests/GUP1_locus.gb b/tests/GUP1_locus.gb index 4b4cccf4..6c0bdc1d 100755 --- a/tests/GUP1_locus.gb +++ b/tests/GUP1_locus.gb @@ -1,11 +1,12 @@ LOCUS . 3683 bp DNA linear UNK 10-JAN-2013 -DEFINITION GUP1_locus +DEFINITION GUP1_locus. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna ldseguid=2pk-W7lWMNwkVe-mOiV9LiE_rXA 2024-06-11T18:43:07 FEATURES Location/Qualifiers rep_origin complement(383..604) /note="ARS716; Autonomously Replicating Sequence" @@ -36,7 +37,7 @@ FEATURES Location/Qualifiers [Evidence IMP] [PMID 18036137]" /GO_function="GO:0015293 - symporter activity [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL084C" /note="Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative @@ -94,7 +95,7 @@ FEATURES Location/Qualifiers IEA]" /GO_function="GO:0003676 - nucleic acid binding [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL085W" /note="hypothetical protein; mutant has long chronological lifespan; has homology to Staphylococcus aureus nuclease; diff --git a/tests/KlLEU2tt.gb b/tests/KlLEU2tt.gb index d4ecce08..e5faa207 100644 --- a/tests/KlLEU2tt.gb +++ b/tests/KlLEU2tt.gb @@ -1,27 +1,30 @@ -LOCUS KlLEU2tt 557 bp ds-DNA linear 24-NOV-2012 +LOCUS KlLEU2tt 557 bp ds-DNA linear UNK 24-NOV-2012 DEFINITION . -ACCESSION -VERSION -SOURCE . +ACCESSION KlLEU2tt +VERSION KlLEU2tt +KEYWORDS . +SOURCE ORGANISM . + . COMMENT >557bp -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna ldseguid=P9x63swJk1IpZaAg0ytfL-Bx1Oc 2024-06-11T18:53:23 FEATURES Location/Qualifiers terminator 1..557 - /label=KlLEU2tt - /ApEinfo_fwdcolor=#f8a669 - /ApEinfo_revcolor=#acffcb - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="KlLEU2tt" + /ApEinfo_fwdcolor="#f8a669" + /ApEinfo_revcolor="#acffcb" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN - 1 AGAGTCTTTT GTAACGACCC CGTCTCCACC AACTTGGTAT GCTTGAAATC TCAAGGCCAT - 61 TACACATTCA GTTATGTGAA CGAAAGGTCT TTATTTAACG TAGCATAAAC TAAATAATAC - 121 AGGTTCCGGT TAGCCTGCAA TGTGTTAAAT CTAAAGGAGC ATACCCAAAA TGAACTGAAG - 181 ACAAGGAAAT TTGCTTGTCC AGATGTGATT GAGCATTTGA ACGTTAATAA CATAACATTT - 241 TTATACTTAA CTATAGAAAG ACTTGTATAA AAACTGGCAA ACGAGATATT CTGAATATTG - 301 GTGCATATTT CAGGTAGAAA AGCTTACAAA ACAATCTAAT CATAATATTG AGATGAAGAG - 361 AAAGATAAAA GAAAAAACGA TAAGTCAGAT GAGATTATGA TTGTACTTTG AAATCGAGGA - 421 ACAAAGTATA TACGGTAGTA GTTCCCCGAG TTATAACGGG AGATCATGTA AATTGAGAAA - 481 CCAGATAAAG ATTTGGTATG CACTCTAGCA AGAAAATAAA ATGATGAATC TATGATATAG - 541 ATCACTTTTG TTCCAGC + 1 agagtctttt gtaacgaccc cgtctccacc aacttggtat gcttgaaatc tcaaggccat + 61 tacacattca gttatgtgaa cgaaaggtct ttatttaacg tagcataaac taaataatac + 121 aggttccggt tagcctgcaa tgtgttaaat ctaaaggagc atacccaaaa tgaactgaag + 181 acaaggaaat ttgcttgtcc agatgtgatt gagcatttga acgttaataa cataacattt + 241 ttatacttaa ctatagaaag acttgtataa aaactggcaa acgagatatt ctgaatattg + 301 gtgcatattt caggtagaaa agcttacaaa acaatctaat cataatattg agatgaagag + 361 aaagataaaa gaaaaaacga taagtcagat gagattatga ttgtactttg aaatcgagga + 421 acaaagtata tacggtagta gttccccgag ttataacggg agatcatgta aattgagaaa + 481 ccagataaag atttggtatg cactctagca agaaaataaa atgatgaatc tatgatatag + 541 atcacttttg ttccagc // diff --git a/tests/SYNPUC19CV.gb b/tests/SYNPUC19CV.gb index 278365f4..5ef17518 100644 --- a/tests/SYNPUC19CV.gb +++ b/tests/SYNPUC19CV.gb @@ -1,6 +1,6 @@ LOCUS SYNPUC19CV 2686 bp DNA circular SYN 22-MAY-2002 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. @@ -40,68 +40,69 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. - Cloning vector (beta-galactosidase mRNA on complementary strand) ENTRY PUC19C #TYPE DNA CIRCULAR TITLE pUC19c - Cloning vector - (beta-galactosidase mRNA on complementary strand) + (beta-galactosidase mRNA on complementary strand) DATE 03-FEB-1986 - #sequence 16-DEC-1986 + #sequence 16-DEC-1986 ACCESSION VB0033 SOURCE artificial COLLECTION ATCC 37254 REFERENCE - #number - #authors Norrander J., Kempe T., Messing J. - #journal Gene (1983) 26: 101-106 + #number + #authors Norrander J., Kempe T., Messing J. + #journal Gene (1983) 26: 101-106 REFERENCE - #number 1 - #authors Yanisch-Perron C., Vieira J., Messing J. - #journal Gene (1985) 33: 103-119 - #comment shows the complete compiled sequence + #number 1 + #authors Yanisch-Perron C., Vieira J., Messing J. + #journal Gene (1985) 33: 103-119 + #comment shows the complete compiled sequence REFERENCE - #number 2 - #authors Chambers,S.P., et al. - #journal Gene (1988) 68: 139-149 - #describes mutation at nt1308 and its effect on copy number + #number 2 + #authors Chambers,S.P., et al. + #journal Gene (1988) 68: 139-149 + #describes mutation at nt1308 and its effect on copy number REFERENCE - #number - #authors Pouwels P.H., Enger-Valk B.E., Brammar W.J. - #book Cloning Vectors, Elsvier 1985 and supplements - #comment vector I-A-iv-20 + #number + #authors Pouwels P.H., Enger-Valk B.E., Brammar W.J. + #book Cloning Vectors, Elsvier 1985 and supplements + #comment vector I-A-iv-20 COMMENT - This Sequence was obtained 3-MAR-1986 from J. Messing, Waksman - Institute, NJ on floppy disk. - Revised 16-DEC-1986 by F. Pfeiffer: - 1062/3 'AT' to 'TA' to match revised sequence of PBR322 - The beta-galactosidase mRNA sequence including the multiple - cloning site of M13mp19 is on the strand complementary to that - shown. + This Sequence was obtained 3-MAR-1986 from J. Messing, Waksman + Institute, NJ on floppy disk. + Revised 16-DEC-1986 by F. Pfeiffer: + 1062/3 'AT' to 'TA' to match revised sequence of PBR322 + The beta-galactosidase mRNA sequence including the multiple + cloning site of M13mp19 is on the strand complementary to that + shown. KEYWORDS CROSSREFERENCE - #complement - VecBase(3):pUC19 - #prerevised - GenBank(50):M11662, EMBL(11):ARPuc19 - #parent - VecBase(3):pUC13, VecBase(3):M13mp19, VecSource(3):bGal19 + #complement + VecBase(3):pUC19 + #prerevised + GenBank(50):M11662, EMBL(11):ARPuc19 + #parent + VecBase(3):pUC13, VecBase(3):M13mp19, VecSource(3):bGal19 PARENT - Features of pUC19c (2686 bp) - residue source - 1- 137 2074-2210 pBR322 - 138- 237 2252-2351 pBR322 - 238- 395 1461-1304 (c) Lac-Operon - 396- 452 57- 1 (c) polylinker of M13mp19 - 455- 682 1298-1071 (c) Lac-Operon - 683-2686 2352-4355 pBR322 - Conflict (cfl) and Mutations (mut): - pUC19c source - mut 1308 A G 2977 pBR322 linked to increased copy number - mut 1942 A G 3611 pBR322 - mut 2243 T C 3912 pBR322 + Features of pUC19c (2686 bp) + residue source + 1- 137 2074-2210 pBR322 + 138- 237 2252-2351 pBR322 + 238- 395 1461-1304 (c) Lac-Operon + 396- 452 57- 1 (c) polylinker of M13mp19 + 455- 682 1298-1071 (c) Lac-Operon + 683-2686 2352-4355 pBR322 + Conflict (cfl) and Mutations (mut): + pUC19c source + mut 1308 A G 2977 pBR322 linked to increased copy number + mut 1942 A G 3611 pBR322 + mut 2243 T C 3912 pBR322 FEATURE - 1629-2417 789-1 (c) Ap-R; b-lactamase + 1629-2417 789-1 (c) Ap-R; b-lactamase POLYLINKER HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION - #resistance Ap - #indicator beta-galactosidase + #resistance Ap + #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. + pydna cdseguid=mCC0B3UMZfgLyh3Pl574MVjm30U 2024-06-11T18:53:17 FEATURES Location/Qualifiers source 1..2686 /organism="Cloning vector pUC19c" diff --git a/tests/X60065.gb b/tests/X60065.gb index b3d9164b..878aae48 100644 --- a/tests/X60065.gb +++ b/tests/X60065.gb @@ -21,6 +21,7 @@ REFERENCE 2 (bases 1 to 1136) JOURNAL Submitted (11-JUN-1991) T. Kristensen, Dept of Mol Biology, University of Aarhus, C F Mollers Alle 130, DK-8000 Aarhus C, DENMARK +COMMENT pydna ldseguid=jzdRtkmFvWmQe91rNsVY9oifWB8 2024-06-11T18:43:13 FEATURES Location/Qualifiers source 1..1136 /organism="Bos taurus" @@ -40,13 +41,13 @@ FEATURES Location/Qualifiers /db_xref="InterPro:IPR015104" /db_xref="InterPro:IPR016060" /db_xref="UniProtKB/Swiss-Prot:P17690" - /translation="PALVLLLGFLCHVAIAGRTCPKPDELPFSTVVPLKRTYEPGEQI - VFSCQPGYVSRGGIRRFTCPLTGLWPINTLKCMPRVCPFAGILENGTVRYTTFEYPNT - ISFSCHTGFYLKGASSAKCTEEGKWSPDLPVCAPITCPPPPIPKFASLSVYKPLAGNN - SFYGSKAVFKCLPHHAMFGNDTVTCTEHGNWTQLPECREVRCPFPSRPDNGFVNHPAN - PVLYYKDTATFGCHETYSLDGPEEVECSKFGNWSAQPSCKASCKLSIKRATVIYEGER - VAIQNKFKNGMLHGQKVSFFCKHKEKKCSYTEDAQCIDGTIEIPKCFKEHSSLAFWKT - DASDVKPC" + /translation="PALVLLLGFLCHVAIAGRTCPKPDELPFSTVVPLKRTYEPGEQIV + FSCQPGYVSRGGIRRFTCPLTGLWPINTLKCMPRVCPFAGILENGTVRYTTFEYPNTIS + FSCHTGFYLKGASSAKCTEEGKWSPDLPVCAPITCPPPPIPKFASLSVYKPLAGNNSFY + GSKAVFKCLPHHAMFGNDTVTCTEHGNWTQLPECREVRCPFPSRPDNGFVNHPANPVLY + YKDTATFGCHETYSLDGPEEVECSKFGNWSAQPSCKASCKLSIKRATVIYEGERVAIQN + KFKNGMLHGQKVSFFCKHKEKKCSYTEDAQCIDGTIEIPKCFKEHSSLAFWKTDASDVK + PC" sig_peptide <1..48 /gene="beta-2-gpI" mat_peptide 49..1026 diff --git a/tests/YLACC1_locus.gb b/tests/YLACC1_locus.gb index 08146268..f290f303 100644 --- a/tests/YLACC1_locus.gb +++ b/tests/YLACC1_locus.gb @@ -29,6 +29,7 @@ COMMENT ##Genome-Assembly-Data-START## Genome Coverage :: 645.0x Sequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq ##Genome-Assembly-Data-END## + pydna ldseguid=5bi0XVRyqLKaSkRKDqs1bvxnHtQ 2024-06-11T18:43:02 FEATURES Location/Qualifiers source 1..7267 /organism="Yarrowia lipolytica" diff --git a/tests/_.gb b/tests/_.gb index dc51050b..8fed4df6 100644 --- a/tests/_.gb +++ b/tests/_.gb @@ -2,11 +2,12 @@ LOCUS . 19114 bp DNA circular UNK 05-MAR-2015 DEFINITION . ACCESSION VERSION -DBLINK BioProject:PRJNA43747 +DBLINK BioProject: PRJNA43747 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=SCGooeNvFeoekY__dmacINuUAhs 2024-06-11T18:53:46 FEATURES Location/Qualifiers overlap 363..524 /note="olp_TMr1vCYKndLNHy6HjaT2Gz37tVU" diff --git a/tests/broken_genbank_files/ApE_example.gb b/tests/broken_genbank_files/ApE_example.gb index d44dde17..b0bce95a 100644 --- a/tests/broken_genbank_files/ApE_example.gb +++ b/tests/broken_genbank_files/ApE_example.gb @@ -1,11 +1,13 @@ -LOCUS New_DNA 2963 bp ds-DNA linear 13-JAN-2011 +LOCUS New_DNA 2963 bp DNA linear UNK 13-JAN-2011 DEFINITION . -ACCESSION -VERSION -SOURCE . +ACCESSION New_DNA +VERSION New_DNA +KEYWORDS . +SOURCE ORGANISM . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna ldseguid=2oLvuMsAc-fgAISC7b3XJBuejGI 2024-06-11T18:40:52 FEATURES Location/Qualifiers source complement(1..2963) /organism="Danio rerio" @@ -14,43 +16,43 @@ FEATURES Location/Qualifiers /chromosome="23" /clone="DKEY-18F23" /clone_lib="DanioKey" - /label=source:Danio rerio - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink + /label="source:Danio rerio" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" misc_feature complement(1..2963) /note="annotated region of clone" - /label=annotated region of clone - /ApEinfo_fwdcolor=#908e8e - /ApEinfo_revcolor=#908e8e + /label="annotated region of clone" + /ApEinfo_fwdcolor="#908e8e" + /ApEinfo_revcolor="#908e8e" gene 1..2963 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1 - /ApEinfo_fwdcolor=#c05e55 - /ApEinfo_revcolor=#c05e55 + /label="tuba1" + /ApEinfo_fwdcolor="#c05e55" + /ApEinfo_revcolor="#c05e55" mRNA join(1..114,1289..1511,1611..1759,1862..2963) /gene="tuba1" /locus_tag="DKEY-18F23.3-001" /product="tubulin, alpha 1" /note="match: cDNAs: Em:AF029250.1; match: ESTs: Em:CN838895.1 Em:CO924442.1" - /label=tubulin, alpha 1 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - polyA_site 2963..2963 + /label="tubulin, alpha 1" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + polyA_site 2963 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1(1) - /ApEinfo_label=tuba1 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink + /label="tuba1(1)" + /ApEinfo_label="tuba1" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" polyA_signal 2945..2950 /gene="tuba1" /locus_tag="DKEY-18F23.3-001" - /label=tuba1(2) - /ApEinfo_label=tuba1 - /ApEinfo_fwdcolor=#c9898e - /ApEinfo_revcolor=#c9898e + /label="tuba1(2)" + /ApEinfo_label="tuba1" + /ApEinfo_fwdcolor="#c9898e" + /ApEinfo_revcolor="#c9898e" CDS join(112..114,1289..1511,1611..1759,1862..2836) /gene="tuba1" /locus_tag="DKEY-18F23.3-001" @@ -59,18 +61,18 @@ FEATURES Location/Qualifiers /product="tubulin, alpha 1" /protein_id="CAX12931.1" /db_xref="GI:220678413" - /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGG - GDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANN - YARGHYTIGKELIDLVLDRVRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD - YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD - IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI - SAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAT - IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLD - HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGAESVEGEDEGEEY" - /label=tubulin, alpha 1(1) - /ApEinfo_label=tubulin, alpha 1 - /ApEinfo_fwdcolor=#e8ff00 - /ApEinfo_revcolor=#e8ff00 + /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG + DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA + RGHYTIGKELIDLVLDRVRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGK + KSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP + TYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA + YHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRT + IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY + AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGAESVEGEDEGEEY" + /label="tubulin, alpha 1(1)" + /ApEinfo_label="tubulin, alpha 1" + /ApEinfo_fwdcolor="#e8ff00" + /ApEinfo_revcolor="#e8ff00" ORIGIN 1 acttcattct ctcaccagac tcataaaagt cgagtgtgag agcgtttata acagaaaaac 61 cgaaggctat cctattcata attgccattc atcgaaaata cacatttgaa aatggtgagt diff --git a/tests/broken_genbank_files/Author sequence.gb b/tests/broken_genbank_files/Author sequence.gb index 80c47767..592ab2a4 100644 --- a/tests/broken_genbank_files/Author sequence.gb +++ b/tests/broken_genbank_files/Author sequence.gb @@ -1,90 +1,116 @@ ->Author sequence -CTCTAGCTTGGGATCTTTGTGAAGGAACCTTACTTCTGTGGTGTGACATAATTGGACAAACTACCTACAG -AGATTTAAAGCTCTAAGGTAAATATAAAATTTTTAAGTGTATAATGTGTTAAACTAGCTGCATATGCTTG -CTGCTTGAGAGTTTTGCTTACTGAGTATGATTTATGAAAATATTATACACAGGAGCTAGTGATTCTAATT -GTTTGTGTATTTTAGATTCACAGTCCCAAGGCTCATTTCAGGCCCCTCAGTCCTCACAGTCTGTTCATGA -TCATAATCAGCCATACCACATTTGTAGAGGTTTTACTTGCTTTAAAAAACCTCCCACACCTCCCCCTGAA -CCTGAAACATAAAATGAATGCAATTGTTGTTGTTAACTTGTTTATTGCAGCTTATAATGGTTACAAATAA -AGCAATAGCATCACAAATTTCACAAATAAAGCATTTTTTTCACTGCATTCTAGTTGTGGTTTGTCCAAAC -TCATCAATGTATCTTATCATGTCTGGATCGATCCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCG -GTTTGCGTATTGGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCT -GAATGGCGAATGGGACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTG -ACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCG -CCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCT -CGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGC -CCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAACCCTA -TCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGAT -TTAACAAAAATTTAACGCGAATTTTAACAAAATATTAACGTTTACAATTTCAGGTGGCACTTTTCGGGGA -AATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGCCAGGTC -TTGGACTGGTGAGAACGGCTTGCTCGGCAGCTTCGATGTGTGCTGGAGGGAGAATAAAGGTCTAAGATGT -GCGATAGAGGGAAGTCGCATTGAATTATGTGCTGTGTAGGGATCGCTGGTATCAAATATGTGTGCCCACC -CCTGGCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAAC -ATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCT -GGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGC -GGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTAT -GTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAA -TGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGC -AGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGG -AGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAA -TGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTA -TTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTG -CAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCG -TGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACG -ACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGC -ATTGGTAACTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAA -AAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGCCATAACTTCGTATAATGTATGCTATACGAAGT -TATGGCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCA -AAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACC -AGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCG -CAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGC -CTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGG -GTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAG -CCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCATTGAGAAAGCGCCACGC -TTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGA -GCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGA -TTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCC -TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTAT -TACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAG -GAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGAGCTT -GCAATTCGCGCGTTTTTCAATATTATTGAAGCATTTATCAGGGTTATTGTCTCATGAGCGGATACATATT -TGAATGTATTTAGAAAAATAAACAAATAGGGGTTCCGCGCACATTTCCCCGAAAAGTGCCACCTGACGTC -TAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTACTACGAGGCCCTTTCACTCATTAG -GCACCCCAGGCTTTACACTTTATAGCTTCCGGCTCGTATAATGTGTGGAATTGTGAGCGGATAACAATTT -CACACAGGAAACAGCATCGTGCAGGTCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCA -ACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCATAGTAACGCCAATAGGGACTTTCCATTG -ACGTCAATGGGTGGAGTATTTACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGCCAAGT -ACGCCCCCTATTGACGTCAATGACGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTATGGG -ACTTTCCTACTTGGCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTA -CATCAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGTCAATGGG -AGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAACAACTCCGCCCCATTGACGCAAA -TGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGCTCGTTTAGTGAACCGTCAGATCGCCTG -GAGACGCCATCCACGCTGTTTTGACCTCCATAGAAGACACCGGGACCGATCCAGCCTCCGGACTCTAGCC -TAGGCTTTTGCAAAAAGCTATTTAGGTGACACTATAGAAGGTACGCCTGCAGGTACCGGTCCGGAATTCC -CGGGTCGACGAGCTCACTAGTCGGCGGCCGCCGCCACCATGAGCAAGGGCGAGGAACTGTTCACTGGCGT -GGTCCCAATTCTCGTGGAACTGGATGGCGATGTGAATGGGCACAAATTTTCTGTCAGCGGAGAGGGTGAA -GGTGATGCCACATACGGAAAGCTCACCCTGAAATTCATCTGCACCACTGGAAAGCTCCCTGTGCCATGGC -CAACACTGGTCACTACCTTCACCTATGGCGTGCAGTGCTTTTCCAGATACCCAGACCATATGAAGCAGCA -TGACTTTTTCAAGAGCGCCATGCCCGAGGGCTATGTGCAGGAGAGAACCATCTTTTTCAAAGATGACGGG -AACTACAAGACCCGCGCTGAAGTCAAGTTCGAAGGTGACACCCTGGTGAATAGAATCGAGTTGAAGGGCA -TTGACTTTAAGGAAGATGGAAACATTCTCGGCCACAAGCTGGAATACAACTATAACTCCCACAATGTGTA -CATCATGGCCGACAAGCAAAAGAATGGCATCAAGGTCAACTTCAAGATCAGACACAACATTGAGGATGGA -TCCGTGCAGCTGGCCGACCATTATCAACAGAACACTCCAATCGGCGACGGCCCTGTGCTCCTCCCAGACA -ACCATTACCTGTCCACCCAGTCTGCCCTGTCTAAAGATCCCAACGAAAAGAGAGACCACATGGTCCTTCT -TGAGTTTGTAACAGCTGCTGGGATTACACATGGCATGGATGAACTATACAAACCTaggatgcggctcaag -gcccagctggaaaaacgttccattggcaggaggaagaggcgagagaagcggagggaaggtggtggcagtg -gtgggggtggggaagaggaggaggaggagggagaagagggtgaggaggacggggatgataaggatgatta -ctggcgggaacagcaagaaaaactggagattgagaagcgggccattgtagaggaccacagcttggttgca -gaggagaagatgaggctgctgaaggagaaggagaaaaagatggaggacctgcggcgagagaaggatgctg -cagagatgctgggtgccaaaatcaaggccatggagagtaagctgcttgtcggaggaaaaaatatagtaga -tcatacaaacgaacagcagaagatcctggagcaaaaacgccaggagatcgcagagcagaaacgtcgagaa -agagaaatccagcagcaaatggagagtcgagatgaggagaccctggaactgaaagagacttacacctcac -tgcagcaggaggtagacatcaagaccaaaaagctcaaaaagctcttttccaagcttcaggccgtgaaggc -cgagatccacgacctccaagaagaacacatcaaagagcgccaggagctggagcagacgcagaatgaactc -acccgggagctaaagctcaagcatcttattatagaaaactttattcccttggaagagaagaataaaatta -tgaatagatccttttttgatgatgaagaagaccattggaaattacatcctataaccagactggaaaacca -gcagatgatgaagcggcctgtctctgctgtgggatacaagagacctctgagccagcatgcacggatgtcc -atgatgattcggccagagccccggtacagggcggagaacatcatgctcttggagttagatatgcccagcc -ggacaaccagagactacgagggcccagccatctctcccaaggttcaggctgcgctggatgcagctctgca -ggatgaagatgagatacaggtggatgcctcatcctttgaaagtactgccagcagaaaacccaaggccagg -cccaagagtggcaggaaatcaggatcctcctcttcctcctcaggaaaccctgcatctcagttttacccac -agtctcgggggctggttcccaagctcGAGTAAGGGGGGCCCGAGCGGCCG +LOCUS Author 6210 bp DNA linear UNK 01-JAN-1980 +DEFINITION Author sequence. +ACCESSION Author +VERSION Author +KEYWORDS . +SOURCE + ORGANISM . + . +COMMENT pydna ldseguid=OPW68QjSB0ahtw4JMMU24n20OVs 2024-06-11T18:53:28 +FEATURES Location/Qualifiers +ORIGIN + 1 ctctagcttg ggatctttgt gaaggaacct tacttctgtg gtgtgacata attggacaaa + 61 ctacctacag agatttaaag ctctaaggta aatataaaat ttttaagtgt ataatgtgtt + 121 aaactagctg catatgcttg ctgcttgaga gttttgctta ctgagtatga tttatgaaaa + 181 tattatacac aggagctagt gattctaatt gtttgtgtat tttagattca cagtcccaag + 241 gctcatttca ggcccctcag tcctcacagt ctgttcatga tcataatcag ccataccaca + 301 tttgtagagg ttttacttgc tttaaaaaac ctcccacacc tccccctgaa cctgaaacat + 361 aaaatgaatg caattgttgt tgttaacttg tttattgcag cttataatgg ttacaaataa + 421 agcaatagca tcacaaattt cacaaataaa gcattttttt cactgcattc tagttgtggt + 481 ttgtccaaac tcatcaatgt atcttatcat gtctggatcg atcctgcatt aatgaatcgg + 541 ccaacgcgcg gggagaggcg gtttgcgtat tggctggcgt aatagcgaag aggcccgcac + 601 cgatcgccct tcccaacagt tgcgcagcct gaatggcgaa tgggacgcgc cctgtagcgg + 661 cgcattaagc gcggcgggtg tggtggttac gcgcagcgtg accgctacac ttgccagcgc + 721 cctagcgccc gctcctttcg ctttcttccc ttcctttctc gccacgttcg ccggctttcc + 781 ccgtcaagct ctaaatcggg ggctcccttt agggttccga tttagtgctt tacggcacct + 841 cgaccccaaa aaacttgatt agggtgatgg ttcacgtagt gggccatcgc cctgatagac + 901 ggtttttcgc cctttgacgt tggagtccac gttctttaat agtggactct tgttccaaac + 961 tggaacaaca ctcaacccta tctcggtcta ttcttttgat ttataaggga ttttgccgat + 1021 ttcggcctat tggttaaaaa atgagctgat ttaacaaaaa tttaacgcga attttaacaa + 1081 aatattaacg tttacaattt caggtggcac ttttcgggga aatgtgcgcg gaacccctat + 1141 ttgtttattt ttctaaatac attcaaatat gtatccgctc atgccaggtc ttggactggt + 1201 gagaacggct tgctcggcag cttcgatgtg tgctggaggg agaataaagg tctaagatgt + 1261 gcgatagagg gaagtcgcat tgaattatgt gctgtgtagg gatcgctggt atcaaatatg + 1321 tgtgcccacc cctggcatga gacaataacc ctgataaatg cttcaataat attgaaaaag + 1381 gaagagtatg agtattcaac atttccgtgt cgcccttatt cccttttttg cggcattttg + 1441 ccttcctgtt tttgctcacc cagaaacgct ggtgaaagta aaagatgctg aagatcagtt + 1501 gggtgcacga gtgggttaca tcgaactgga tctcaacagc ggtaagatcc ttgagagttt + 1561 tcgccccgaa gaacgttttc caatgatgag cacttttaaa gttctgctat gtggcgcggt + 1621 attatcccgt attgacgccg ggcaagagca actcggtcgc cgcatacact attctcagaa + 1681 tgacttggtt gagtactcac cagtcacaga aaagcatctt acggatggca tgacagtaag + 1741 agaattatgc agtgctgcca taaccatgag tgataacact gcggccaact tacttctgac + 1801 aacgatcgga ggaccgaagg agctaaccgc ttttttgcac aacatggggg atcatgtaac + 1861 tcgccttgat cgttgggaac cggagctgaa tgaagccata ccaaacgacg agcgtgacac + 1921 cacgatgcct gtagcaatgg caacaacgtt gcgcaaacta ttaactggcg aactacttac + 1981 tctagcttcc cggcaacaat taatagactg gatggaggcg gataaagttg caggaccact + 2041 tctgcgctcg gcccttccgg ctggctggtt tattgctgat aaatctggag ccggtgagcg + 2101 tgggtctcgc ggtatcattg cagcactggg gccagatggt aagccctccc gtatcgtagt + 2161 tatctacacg acggggagtc aggcaactat ggatgaacga aatagacaga tcgctgagat + 2221 aggtgcctca ctgattaagc attggtaact gtcagaccaa gtttactcat atatacttta + 2281 gattgattta aaacttcatt tttaatttaa aaggatctag gtgaagatcc tttttgataa + 2341 tctcatgcca taacttcgta taatgtatgc tatacgaagt tatggcatga ccaaaatccc + 2401 ttaacgtgag ttttcgttcc actgagcgtc agaccccgta gaaaagatca aaggatcttc + 2461 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc + 2521 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt + 2581 cagcagagcg cagataccaa atactgtcct tctagtgtag ccgtagttag gccaccactt + 2641 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc + 2701 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa + 2761 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac + 2821 ctacaccgaa ctgagatacc tacagcgtga gcattgagaa agcgccacgc ttcccgaagg + 2881 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga + 2941 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact + 3001 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa + 3061 cgcggccttt ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc + 3121 gttatcccct gattctgtgg ataaccgtat taccgccttt gagtgagctg ataccgctcg + 3181 ccgcagccga acgaccgagc gcagcgagtc agtgagcgag gaagcggaag agcgcccaat + 3241 acgcaaaccg cctctccccg cgcgttggcc gattcattaa tgcagagctt gcaattcgcg + 3301 cgtttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg gatacatatt + 3361 tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc gaaaagtgcc + 3421 acctgacgtc taagaaacca ttattatcat gacattaacc tataaaaata ggcgtactac + 3481 gaggcccttt cactcattag gcaccccagg ctttacactt tatagcttcc ggctcgtata + 3541 atgtgtggaa ttgtgagcgg ataacaattt cacacaggaa acagcatcgt gcaggtcgtt + 3601 acataactta cggtaaatgg cccgcctggc tgaccgccca acgacccccg cccattgacg + 3661 tcaataatga cgtatgttcc catagtaacg ccaataggga ctttccattg acgtcaatgg + 3721 gtggagtatt tacggtaaac tgcccacttg gcagtacatc aagtgtatca tatgccaagt + 3781 acgcccccta ttgacgtcaa tgacggtaaa tggcccgcct ggcattatgc ccagtacatg + 3841 accttatggg actttcctac ttggcagtac atctacgtat tagtcatcgc tattaccatg + 3901 gtgatgcggt tttggcagta catcaatggg cgtggatagc ggtttgactc acggggattt + 3961 ccaagtctcc accccattga cgtcaatggg agtttgtttt ggcaccaaaa tcaacgggac + 4021 tttccaaaat gtcgtaacaa ctccgcccca ttgacgcaaa tgggcggtag gcgtgtacgg + 4081 tgggaggtct atataagcag agctcgttta gtgaaccgtc agatcgcctg gagacgccat + 4141 ccacgctgtt ttgacctcca tagaagacac cgggaccgat ccagcctccg gactctagcc + 4201 taggcttttg caaaaagcta tttaggtgac actatagaag gtacgcctgc aggtaccggt + 4261 ccggaattcc cgggtcgacg agctcactag tcggcggccg ccgccaccat gagcaagggc + 4321 gaggaactgt tcactggcgt ggtcccaatt ctcgtggaac tggatggcga tgtgaatggg + 4381 cacaaatttt ctgtcagcgg agagggtgaa ggtgatgcca catacggaaa gctcaccctg + 4441 aaattcatct gcaccactgg aaagctccct gtgccatggc caacactggt cactaccttc + 4501 acctatggcg tgcagtgctt ttccagatac ccagaccata tgaagcagca tgactttttc + 4561 aagagcgcca tgcccgaggg ctatgtgcag gagagaacca tctttttcaa agatgacggg + 4621 aactacaaga cccgcgctga agtcaagttc gaaggtgaca ccctggtgaa tagaatcgag + 4681 ttgaagggca ttgactttaa ggaagatgga aacattctcg gccacaagct ggaatacaac + 4741 tataactccc acaatgtgta catcatggcc gacaagcaaa agaatggcat caaggtcaac + 4801 ttcaagatca gacacaacat tgaggatgga tccgtgcagc tggccgacca ttatcaacag + 4861 aacactccaa tcggcgacgg ccctgtgctc ctcccagaca accattacct gtccacccag + 4921 tctgccctgt ctaaagatcc caacgaaaag agagaccaca tggtccttct tgagtttgta + 4981 acagctgctg ggattacaca tggcatggat gaactataca aacctaggat gcggctcaag + 5041 gcccagctgg aaaaacgttc cattggcagg aggaagaggc gagagaagcg gagggaaggt + 5101 ggtggcagtg gtgggggtgg ggaagaggag gaggaggagg gagaagaggg tgaggaggac + 5161 ggggatgata aggatgatta ctggcgggaa cagcaagaaa aactggagat tgagaagcgg + 5221 gccattgtag aggaccacag cttggttgca gaggagaaga tgaggctgct gaaggagaag + 5281 gagaaaaaga tggaggacct gcggcgagag aaggatgctg cagagatgct gggtgccaaa + 5341 atcaaggcca tggagagtaa gctgcttgtc ggaggaaaaa atatagtaga tcatacaaac + 5401 gaacagcaga agatcctgga gcaaaaacgc caggagatcg cagagcagaa acgtcgagaa + 5461 agagaaatcc agcagcaaat ggagagtcga gatgaggaga ccctggaact gaaagagact + 5521 tacacctcac tgcagcagga ggtagacatc aagaccaaaa agctcaaaaa gctcttttcc + 5581 aagcttcagg ccgtgaaggc cgagatccac gacctccaag aagaacacat caaagagcgc + 5641 caggagctgg agcagacgca gaatgaactc acccgggagc taaagctcaa gcatcttatt + 5701 atagaaaact ttattccctt ggaagagaag aataaaatta tgaatagatc cttttttgat + 5761 gatgaagaag accattggaa attacatcct ataaccagac tggaaaacca gcagatgatg + 5821 aagcggcctg tctctgctgt gggatacaag agacctctga gccagcatgc acggatgtcc + 5881 atgatgattc ggccagagcc ccggtacagg gcggagaaca tcatgctctt ggagttagat + 5941 atgcccagcc ggacaaccag agactacgag ggcccagcca tctctcccaa ggttcaggct + 6001 gcgctggatg cagctctgca ggatgaagat gagatacagg tggatgcctc atcctttgaa + 6061 agtactgcca gcagaaaacc caaggccagg cccaagagtg gcaggaaatc aggatcctcc + 6121 tcttcctcct caggaaaccc tgcatctcag ttttacccac agtctcgggg gctggttccc + 6181 aagctcgagt aaggggggcc cgagcggccg +// diff --git a/tests/broken_genbank_files/NCBI_example.gb b/tests/broken_genbank_files/NCBI_example.gb index 69325e5f..40f43566 100644 --- a/tests/broken_genbank_files/NCBI_example.gb +++ b/tests/broken_genbank_files/NCBI_example.gb @@ -7,8 +7,8 @@ KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; - Actinopterygii; Neopterygii; Teleostei; Ostariophysi; - Cypriniformes; Cyprinidae; Danio. + Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; + Cyprinidae; Danio. REFERENCE 1 (bases 1 to 1466) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., @@ -18,16 +18,16 @@ REFERENCE 1 (bases 1 to 1466) Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., - Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., - McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., - Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., - Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., - Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., - Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., - Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., - Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., - Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., - Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. + Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., + Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., + Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., + Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., + Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., + Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., + Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., + Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., + Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., + Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences @@ -50,12 +50,12 @@ COMMENT Contact: MGC help desk Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. - Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 165 Row: c Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37748472. + pydna ldseguid=_GHnVotdYSxAKX2bAUIa10ZZDhE 2024-06-11T18:40:52 FEATURES Location/Qualifiers source 1..1466 /organism="Danio rerio" @@ -88,9 +88,9 @@ FEATURES Location/Qualifiers /db_xref="GI:46329548" /db_xref="GeneID:336121" /db_xref="ZFIN:ZDB-GENE-030804-3" - /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP - TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYIS - AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" + /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT + EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA + ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" ORIGIN 1 gtggactgtt gttctgtgtg gaaatacatc tgctaaaaca gcgcgatggc tgaccagttg 61 acagaagagc agatcgccga attcaaagag gctttctcac tctttgataa agacggtgat diff --git a/tests/broken_genbank_files/VectorNTI_example.gb b/tests/broken_genbank_files/VectorNTI_example.gb index 04d652cd..11d47649 100644 --- a/tests/broken_genbank_files/VectorNTI_example.gb +++ b/tests/broken_genbank_files/VectorNTI_example.gb @@ -1,3327 +1,3541 @@ -LOCUS F-GFAP-gCaMP\3-W 11512 bp DNA circular 14-JUN-2010 +LOCUS F-GFAP-gCaMP\3-W 11512 bp DNA circular UNK 14-JUN-2010 +DEFINITION . +ACCESSION F-GFAP-gCaMP\3-W +VERSION F-GFAP-gCaMP\3-W +KEYWORDS . SOURCE ORGANISM + . COMMENT This file is created by Vector NTI http://www.invitrogen.com/ -COMMENT ORIGDB|GenBank -COMMENT VNTDATE|556961361| -COMMENT VNTDBDATE|556961361| -COMMENT LSOWNER| -COMMENT VNTNAME|F-GFAP-gCaMP 3-WPRE| -COMMENT VNTAUTHORNAME|Charu Ramakrishnan| -COMMENT VNTOAUTHORNAME|Feng Zhang| -COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!) -COMMENT (SXF -COMMENT (CGexDoc "F-GFAP-gCaMP 3-WPRE" 0 11512 -COMMENT (CDBMol 0 0 1 1 1 0 0 1 0 "" "" 0 0 0 0 (CObList) (CObList) (CObList) -COMMENT (CObList) -1 "") -COMMENT (CDocSetData 1 1 0 0 0 1 "MAIN" 1 1 1 1 0 0 1 1 0 1 10 10 4294967295 50 0 -COMMENT 1 0 (CHomObj 0 0 0 3 75) -COMMENT (CWordArray 47 49 50 48 51 52 81 0 1 3 4 82 5 83 2 6 7 9 61 102 10 11 12 -COMMENT 13 14 15 16 17 18 19 84 20 85 21 22 86 87 88 23 54 62 24 89 103 104 274 -COMMENT 25 26 55 91 27 28 29 30 31 92 32 34 35 33 53 58 93 56 94 37 105 57 38 -COMMENT 36 39 40 41 42 43 95 44 59 99 96 97 45 100 46) (CWordArray) -COMMENT (CStringList "BsrGI" "AarI" "AatII" "Acc65I" "AccI" "AceIII" 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180) -COMMENT (CObjectList -COMMENT #410=(CLinePar -COMMENT (CParagraph 0 (1 #58# 1) 1 2 2 0 -COMMENT 191) " N1: 4916 " 1))))) -COMMENT "BsaBI: 1 site") 5 5 "GATNNNNATC" "CTANNNNTAG") -COMMENT #411=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51061992 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaHI: 12 sites") 2 4 "GRCGYC" -COMMENT "CYGCRG") -COMMENT #412=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062024 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaI: 10 sites") 7 11 -COMMENT "GGTCTCNNNNNN" "CCAGAGNNNNNN") -COMMENT #413=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062192 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaJI: 65 sites") 1 5 "CCNNGG" -COMMENT "GGNNCC") -COMMENT #414=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062224 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaWI: 7 sites") 1 5 "WCCGGW" -COMMENT "WGGCCW") -COMMENT #415=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062256 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsaXI: 5 sites") 21 18 -COMMENT "ACNNNNNCTCCNNNNNNNNNNN" "TGNNNNNGAGGNNNNNNNNNNN") -COMMENT #416=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062288 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BscAI: 28 sites") 9 11 -COMMENT "GCATCNNNNNNN" "CGTAGNNNNNNN") -COMMENT #417=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062320 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseMII: 28 sites") 15 13 -COMMENT "CTCAGNNNNNNNNNNN" "GAGTCNNNNNNNNNNN") -COMMENT #418=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062352 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseRI: 15 sites") 16 14 -COMMENT "GAGGAGNNNNNNNNNNN" "CTCCTCNNNNNNNNNNN") -COMMENT #419=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062384 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BseYI: 19 sites") 1 5 "CCCAGC" -COMMENT "GGGTCG") -COMMENT #420=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062416 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsgI: 9 sites") 22 20 -COMMENT "GTGCAGNNNNNNNNNNNNNNNNN" "CACGTCNNNNNNNNNNNNNNNNN") -COMMENT #421=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062448 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiEI: 8 sites") 4 2 "CGRYCG" -COMMENT "GCYRGC") -COMMENT #422=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062480 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiHKAI: 12 sites") 5 1 "GWGCWC" -COMMENT "CWCGWG") -COMMENT #423=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062648 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsiWI: 0 sites") 1 5 "CGTACG" -COMMENT "GCATGC") -COMMENT #424=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062680 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BslI: 41 sites") 7 4 -COMMENT "CCNNNNNNNGG" "GGNNNNNNNCC") -COMMENT #425=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062712 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmAI: 20 sites") 6 10 -COMMENT "GTCTCNNNNNN" "CAGAGNNNNNN") -COMMENT #426=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062744 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmBI: 2 sites") 7 11 -COMMENT "CGTCTCNNNNNN" "GCAGAGNNNNNN") -COMMENT #427=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062776 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmFI: 30 sites") 15 19 -COMMENT "GGGACNNNNNNNNNNNNNNN" "CCCTGNNNNNNNNNNNNNNN") -COMMENT #428=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062808 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsmI: 2 sites") 7 5 "GAATGCNN" -COMMENT "CTTACGNN") -COMMENT #429=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062840 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsp1286I: 33 sites") 5 1 "GDGCHC" -COMMENT "CHCGDG") -COMMENT #430=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062880 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsp24I: 12 sites") 24 19 -COMMENT "GACNNNNNNTGGNNNNNNNNNNNNN" -COMMENT "CTGNNNNNNACCNNNNNNNNNNNNN") -COMMENT #431=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062920 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspCNI: 28 sites") 14 12 -COMMENT "CTCAGNNNNNNNNNN" "GAGTCNNNNNNNNNN") -COMMENT #432=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51062952 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #433=(CGroupPar -COMMENT (CParagraph 0 (10 #80# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #434=(CLinePar -COMMENT (CParagraph 0 (1 #80# 1) 1 2 2 0 -COMMENT 191) " N1: 7305 " 1))))) -COMMENT "BspEI: 1 site") 1 5 "TCCGGA" "AGGCCT") -COMMENT #435=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063120 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspHI: 2 sites") 1 5 "TCATGA" -COMMENT "AGTACT") -COMMENT #436=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063152 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BspMI: 3 sites") 10 14 -COMMENT "ACCTGCNNNNNNNNN" "TGGACGNNNNNNNNN") -COMMENT #437=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063184 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrBI: 5 sites") 3 3 "CCGCTC" -COMMENT "GGCGAG") -COMMENT #438=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063216 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrDI: 5 sites") 8 6 "GCAATGNNN" -COMMENT "CGTTACNNN") -COMMENT #439=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063248 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrFI: 12 sites") 1 5 "RCCGGY" -COMMENT "YGGCCR") -COMMENT #440=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51046360 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrGI: 2 sites") 1 5 "TGTACA" -COMMENT "ACATGT") -COMMENT #441=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063280 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BsrI: 31 sites") 6 4 "ACTGGNN" -COMMENT "TGACCNN") -COMMENT #442=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063312 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BssHII: 2 sites") 1 5 "GCGCGC" -COMMENT "CGCGCG") -COMMENT #443=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063344 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BssSI: 3 sites") 1 5 "CACGAG" -COMMENT "GTGCTC") -COMMENT #444=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063376 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstAPI: 4 sites") 7 4 -COMMENT "GCANNNNNTGC" "CGTNNNNNACG") -COMMENT #445=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063408 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #446=(CGroupPar -COMMENT (CParagraph 0 (10 #90# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #447=(CLinePar -COMMENT (CParagraph 0 (1 #90# 1) 1 2 2 0 -COMMENT 191) " N1: 5185 " 1))))) -COMMENT "BstBI: 1 site") 2 4 "TTCGAA" "AAGCTT") -COMMENT #448=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063576 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #449=(CGroupPar -COMMENT (CParagraph 0 (10 #91# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #450=(CLinePar -COMMENT (CParagraph 0 (1 #91# 1) 1 2 2 0 -COMMENT 191) " N1: 3844 " 1))))) -COMMENT "BstEII: 1 site") 1 6 "GGTNACC" "CCANTGG") -COMMENT #451=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063608 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstF5I: 23 sites") 7 5 "GGATGNNN" -COMMENT "CCTACNNN") -COMMENT #452=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063640 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstKTI: 51 sites") 3 1 "GATC" -COMMENT "CTAG") -COMMENT #453=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063672 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstNI: 60 sites") 2 3 "CCWGG" -COMMENT "GGWCC") -COMMENT #454=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063704 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstUI: 31 sites") 2 2 "CGCG" -COMMENT "GCGC") -COMMENT #455=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063736 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstXI: 4 sites") 8 4 -COMMENT "CCANNNNNNTGG" "GGTNNNNNNACC") -COMMENT #456=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063768 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BstYI: 22 sites") 1 5 "RGATCY" -COMMENT "YCTAGR") -COMMENT #457=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063800 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #458=(CGroupPar -COMMENT (CParagraph 0 (10 #98# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #459=(CLinePar -COMMENT (CParagraph 0 (1 #98# 1) 1 2 2 0 -COMMENT 191) " N1: 9321 " 1))))) -COMMENT "BstZ17I: 1 site") 3 3 "GTATAC" "CATATG") -COMMENT #460=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063832 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Bsu36I: 3 sites") 2 5 "CCTNAGG" -COMMENT "GGANTCC") -COMMENT #461=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51063864 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BtgI: 10 sites") 1 5 "CCRYGG" -COMMENT "GGYRCC") -COMMENT #462=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064032 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BthCI: 68 sites") 4 1 "GCNGC" -COMMENT "CGNCG") -COMMENT #463=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064064 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "BtsI: 16 sites") 8 6 "GCAGTGNNN" -COMMENT "CGTCACNNN") -COMMENT #464=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064096 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Cac8I: 58 sites") 3 3 "GCNNGC" -COMMENT "CGNNCG") -COMMENT #465=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064128 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CdiI: 20 sites") 4 4 "CATCG" -COMMENT "GTAGC") -COMMENT #466=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064160 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "ChaI: 51 sites") 5 1 "NGATCN" -COMMENT "NCTAGN") -COMMENT #467=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064192 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CjeI: 35 sites") 26 20 -COMMENT "CCANNNNNNGTNNNNNNNNNNNNNNNN" -COMMENT "GGTNNNNNNCANNNNNNNNNNNNNNNN") -COMMENT #468=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064224 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CjePI: 32 sites") 26 20 -COMMENT "CCANNNNNNNTCNNNNNNNNNNNNNNN" -COMMENT "GGTNNNNNNNAGNNNNNNNNNNNNNNN") -COMMENT #469=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064256 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "ClaI: 3 sites") 2 4 "ATCGAT" -COMMENT "TAGCTA") -COMMENT #470=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064288 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Csp6I: 27 sites") 1 3 "GTAC" -COMMENT "CATG") -COMMENT #471=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064320 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CviAII: 43 sites") 1 3 "CATG" -COMMENT "GTAC") -COMMENT #472=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064488 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "CviJI: 231 sites") 2 2 "RGCY" -COMMENT "YCGR") -COMMENT #473=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064520 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DdeI: 32 sites") 1 4 "CTNAG" -COMMENT "GANTC") -COMMENT #474=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064552 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DpnI: 51 sites") 2 2 "GATC" -COMMENT "CTAG") -COMMENT #475=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064584 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DraI: 7 sites") 3 3 "TTTAAA" -COMMENT "AAATTT") -COMMENT #476=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064616 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DraIII: 4 sites") 6 3 "CACNNNGTG" -COMMENT "GTGNNNCAC") -COMMENT #477=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064648 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "DrdI: 2 sites") 7 5 -COMMENT "GACNNNNNNGTC" "CTGNNNNNNCAG") -COMMENT #478=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064680 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EaeI: 10 sites") 1 5 "YGGCCR" -COMMENT "RCCGGY") -COMMENT #479=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064712 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EagI: 2 sites") 1 5 "CGGCCG" -COMMENT "GCCGGC") -COMMENT #480=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064744 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EarI: 9 sites") 7 10 -COMMENT "CTCTTCNNNNN" "GAGAAGNNNNN") -COMMENT #481=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064776 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EciI: 12 sites") 17 15 -COMMENT "GGCGGANNNNNNNNNNNN" "CCGCCTNNNNNNNNNNNN") -COMMENT #482=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064944 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Eco57MI: 29 sites") 22 20 -COMMENT "CTGRAGNNNNNNNNNNNNNNNNN" "GACYTCNNNNNNNNNNNNNNNNN") -COMMENT #483=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51064976 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoHI: 19 sites") 1 6 "NCCSGGN" -COMMENT "NGGSCCN") -COMMENT #484=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065008 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoICRI: 5 sites") 3 3 "GAGCTC" -COMMENT "CTCGAG") -COMMENT #485=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065040 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoNI: 2 sites") 5 6 -COMMENT "CCTNNNNNAGG" "GGANNNNNTCC") -COMMENT #486=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065072 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoO109I: 9 sites") 2 5 "RGGNCCY" -COMMENT "YCCNGGR") -COMMENT #487=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065112 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #488=(CGroupPar -COMMENT (CParagraph 0 (10 #126# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #489=(CLinePar -COMMENT (CParagraph 0 (1 #126# 1) 1 2 2 0 -COMMENT 191) " N1: 6181 " 1))))) -COMMENT "EcoRI: 1 site") 1 5 "GAATTC" "CTTAAG") -COMMENT #490=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065152 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EcoRV: 3 sites") 3 3 "GATATC" -COMMENT "CTATAG") -COMMENT #491=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065184 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "EsaBC3I: 26 sites") 2 2 "TCGA" -COMMENT "AGCT") -COMMENT #492=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065216 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FalI: 5 sites") 38 1 -COMMENT "NNNNNNNNNNNNNNAAGNNNNNCTTNNNNNNNNNNNNNN" -COMMENT "NNNNNNNNNNNNNNTTCNNNNNGAANNNNNNNNNNNNNN") -COMMENT #493=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065248 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FatI: 43 sites") 1 5 "NCATGN" -COMMENT "NGTACN") -COMMENT #494=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065416 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FauI: 20 sites") 9 11 -COMMENT "CCCGCNNNNNNN" "GGGCGNNNNNNN") -COMMENT #495=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065448 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FmuI: 42 sites") 4 1 "GGNCC" -COMMENT "CCNGG") -COMMENT #496=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065480 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Fnu4HI: 68 sites") 2 3 "GCNGC" -COMMENT "CGNCG") -COMMENT #497=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065512 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FokI: 23 sites") 14 18 -COMMENT "GGATGNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNN") -COMMENT #498=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065544 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #499=(CGroupPar -COMMENT (CParagraph 0 (10 #135# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #500=(CLinePar -COMMENT (CParagraph 0 (1 #135# 1) 1 2 2 0 -COMMENT 191) " N1: 8961 " 1))))) -COMMENT "FseI: 1 site") 6 2 "GGCCGGCC" "CCGGCCGG") -COMMENT #501=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065576 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "FspAI: 0 sites") 4 4 "RTGCGCAY" -COMMENT "YACGCGTR") -COMMENT #502=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065608 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #503=(CGroupPar -COMMENT (CParagraph 0 (10 #137# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #504=(CLinePar -COMMENT (CParagraph 0 (1 #137# 1) 1 2 2 0 -COMMENT 191) " N1: 10815 " 1))))) -COMMENT "FspI: 1 site") 3 3 "TGCGCA" "ACGCGT") -COMMENT #505=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065640 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "GdiII: 10 sites") 1 5 "CGGCCR" -COMMENT "GCCGGY") -COMMENT #506=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065672 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HaeI: 16 sites") 3 3 "WGGCCW" -COMMENT "WCCGGW") -COMMENT #507=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065704 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HaeII: 7 sites") 5 1 "RGCGCY" -COMMENT "YCGCGR") -COMMENT #508=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065872 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HaeIII: 56 sites") 2 2 "GGCC" -COMMENT "CCGG") -COMMENT #509=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065904 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HaeIV: 7 sites") 40 1 -COMMENT "NNNNNNNNNNNNNNNGAYNNNNNRTCNNNNNNNNNNNNNNN" -COMMENT "NNNNNNNNNNNNNNNCTRNNNNNYAGNNNNNNNNNNNNNNN") -COMMENT #510=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065936 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HgaI: 14 sites") 10 15 -COMMENT "GACGCNNNNNNNNNNN" "CTGCGNNNNNNNNNNN") -COMMENT #511=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51065968 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HhaI: 44 sites") 3 1 "GCGC" -COMMENT "CGCG") -COMMENT #512=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066000 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Hin4I: 26 sites") 24 19 -COMMENT "GAYNNNNNVTCNNNNNNNNNNNNNN" -COMMENT "CTRNNNNNBAGNNNNNNNNNNNNNN") -COMMENT #513=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066032 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HincII: 8 sites") 3 3 "GTYRAC" -COMMENT "CARYTG") -COMMENT #514=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066064 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HindIII: 5 sites") 1 5 "AAGCTT" -COMMENT "TTCGAA") -COMMENT #515=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066096 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HinfI: 26 sites") 1 4 "GANTC" -COMMENT "CTNAG") -COMMENT #516=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066128 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HinP1I: 44 sites") 1 3 "GCGC" -COMMENT "CGCG") -COMMENT #517=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066160 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #518=(CGroupPar -COMMENT (CParagraph 0 (10 #150# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #519=(CLinePar -COMMENT (CParagraph 0 (1 #150# 1) 1 2 2 0 -COMMENT 191) " N1: 6080 " 1))))) -COMMENT "HpaI: 1 site") 3 3 "GTTAAC" "CAATTG") -COMMENT #520=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066328 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HpaII: 40 sites") 1 3 "CCGG" -COMMENT "GGCC") -COMMENT #521=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51066360 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "HphI: 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"MnlI: 123 sites") 11 10 -COMMENT "CCTCNNNNNNNN" "GGAGNNNNNNNN") -COMMENT #543=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067392 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "MscI: 2 sites") 3 3 "TGGCCA" -COMMENT "ACCGGT") -COMMENT #544=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067424 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "MseI: 44 sites") 1 3 "TTAA" -COMMENT "AATT") -COMMENT #545=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067456 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "MslI: 9 sites") 5 5 "CAYNNNNRTG" -COMMENT "GTRNNNNYAC") -COMMENT #546=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067488 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "MspA1I: 14 sites") 3 3 "CMGCKG" -COMMENT "GKCGMC") -COMMENT #547=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067520 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "MwoI: 71 sites") 7 4 -COMMENT "GCNNNNNNNGC" "CGNNNNNNNCG") -COMMENT #548=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067552 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NaeI: 6 sites") 3 3 "GCCGGC" -COMMENT "CGGCCG") -COMMENT #549=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067584 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NarI: 2 sites") 2 4 "GGCGCC" -COMMENT "CCGCGG") -COMMENT #550=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067752 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NciI: 19 sites") 2 3 "CCSGG" -COMMENT "GGSCC") -COMMENT #551=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067784 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "NcoI: 6 sites") 1 5 "CCATGG" -COMMENT "GGTACC") -COMMENT #552=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51067816 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #553=(CGroupPar -COMMENT (CParagraph 0 (10 #183# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #554=(CLinePar -COMMENT (CParagraph 0 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-COMMENT "GAACNNNNNCTCNNNNNNNNNNNNNN" -COMMENT "CTTGNNNNNGAGNNNNNNNNNNNNNN") -COMMENT #580=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51068680 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Ppu10I: 3 sites") 1 5 "ATGCAT" -COMMENT "TACGTA") -COMMENT #581=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51068712 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "PpuMI: 3 sites") 2 5 "RGGWCCY" -COMMENT "YCCWGGR") -COMMENT #582=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51068744 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "PshAI: 0 sites") 5 5 "GACNNNNGTC" -COMMENT "CTGNNNNCAG") -COMMENT #583=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51068776 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "PsiI: 2 sites") 3 3 "TTATAA" -COMMENT "AATATT") -COMMENT #584=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51068808 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "Psp03I: 14 sites") 4 1 "GGWCC" -COMMENT 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#590=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51069136 (8 0) 1 1 1 0 178) -COMMENT (CObjectList -COMMENT #591=(CGroupPar -COMMENT (CParagraph 0 (10 #211# 0) 1 2 2 0 180) -COMMENT (CObjectList -COMMENT #592=(CLinePar -COMMENT (CParagraph 0 (1 #211# 1) 1 2 2 0 -COMMENT 191) " N1: 10963 " 1))))) -COMMENT "PvuI: 1 site") 4 2 "CGATCG" "GCTAGC") -COMMENT #593=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51069168 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "PvuII: 4 sites") 3 3 "CAGCTG" -COMMENT "GTCGAC") -COMMENT #594=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51069200 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "RleAI: 5 sites") 18 15 -COMMENT "CCCACANNNNNNNNNNNNN" "GGGTGTNNNNNNNNNNNNN") -COMMENT #595=(CRSFolderPar -COMMENT (CFolderPar -COMMENT (CGroupPar (CParagraph 51069232 (8 0) 1 1 1 0 178) -COMMENT (CObjectList)) "RsaI: 27 sites") 2 2 "GTAC" -COMMENT "CATG") -COMMENT #596=(CRSFolderPar -COMMENT (CFolderPar -COMMENT 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(CObjectList)) "AatII: 7 sites") 5 1 "GACGTC" + "CTGCAG") + #345=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046264 (8 0) 1 1 1 0 178) + (CObjectList)) "Acc65I: 4 sites") 1 5 "GGTACC" + "CCATGG") + #346=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046232 (8 0) 1 1 1 0 178) + (CObjectList)) "AccI: 7 sites") 2 4 "GTMKAC" + "CAKMTG") + #347=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046200 (8 0) 1 1 1 0 178) + (CObjectList)) "AceIII: 20 sites") 13 17 + "CAGCTCNNNNNNNNNNNN" "GTCGAGNNNNNNNNNNNN") + #348=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046168 (8 0) 1 1 1 0 178) + (CObjectList)) "AciI: 95 sites") 1 3 "CCGC" + "GGCG") + #349=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046136 (8 0) 1 1 1 0 178) + (CObjectList)) "AclI: 2 sites") 2 4 "AACGTT" + "TTGCAA") + #350=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046104 (8 0) 1 1 1 0 178) + (CObjectList)) "AcuI: 11 sites") 22 20 + "CTGAAGNNNNNNNNNNNNNNNNN" "GACTTCNNNNNNNNNNNNNNNNN") + #351=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51045936 (8 0) 1 1 1 0 178) + (CObjectList)) "AfeI: 0 sites") 3 3 "AGCGCT" + "TCGCGA") + #352=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046792 (8 0) 1 1 1 0 178) + (CObjectList)) "AflII: 3 sites") 1 5 "CTTAAG" + "GAATTC") + #353=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046760 (8 0) 1 1 1 0 178) + (CObjectList)) "AflIII: 7 sites") 1 5 "ACRYGT" + "TGYRCA") + #354=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046592 (8 0) 1 1 1 0 178) + (CObjectList + #355=(CGroupPar + (CParagraph 0 (10 #12# 0) 1 2 2 0 180) + (CObjectList + #356=(CLinePar + (CParagraph 0 (1 #12# 1) 1 2 2 0 + 191) " N1: 4814 " 1))))) + "AgeI: 1 site") 1 5 "ACCGGT" "TGGCCA") + #357=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046560 (8 0) 1 1 1 0 178) + (CObjectList)) "AhdI: 3 sites") 6 5 "GACNNNNNGTC" + "CTGNNNNNCAG") + #358=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046392 (8 0) 1 1 1 0 178) + (CObjectList)) "AleI: 4 sites") 5 5 "CACNNNNGTG" + "GTGNNNNCAC") + #359=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060200 (8 0) 1 1 1 0 178) + (CObjectList + #360=(CGroupPar + (CParagraph 0 (10 #15# 0) 1 2 2 0 180) + (CObjectList + #361=(CLinePar + (CParagraph 0 (1 #15# 1) 1 2 2 0 + 191) + " N1: 8069 (on complementary strand)" + 1))))) "AloI: 1 site") 25 20 + "GAACNNNNNNTCCNNNNNNNNNNNNN" + "CTTGNNNNNNAGGNNNNNNNNNNNNN") + #362=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060232 (8 0) 1 1 1 0 178) + (CObjectList)) "AluI: 63 sites") 2 2 "AGCT" + "TCGA") + #363=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060264 (8 0) 1 1 1 0 178) + (CObjectList)) "AlwI: 31 sites") 9 10 + "GGATCNNNNNN" "CCTAGNNNNNN") + #364=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060296 (8 0) 1 1 1 0 178) + (CObjectList)) "AlwNI: 5 sites") 6 3 "CAGNNNCTG" + "GTCNNNGAC") + #365=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060328 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaBI: 4 sites") 8 3 + "GCANNNNNTGC" "CGTNNNNNACG") + #366=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060360 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaI: 4 sites") 5 1 "GGGCCC" + "CCCGGG") + #367=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060392 (8 0) 1 1 1 0 178) + (CObjectList)) "ApaLI: 5 sites") 1 5 "GTGCAC" + "CACGTG") + #368=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060424 (8 0) 1 1 1 0 178) + (CObjectList)) "ApoI: 11 sites") 1 5 "RAATTY" + "YTTAAR") + #369=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060456 (8 0) 1 1 1 0 178) + (CObjectList)) "AscI: 0 sites") 2 6 "GGCGCGCC" + "CCGCGCGG") + #370=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060488 (8 0) 1 1 1 0 178) + (CObjectList)) "AseI: 6 sites") 2 4 "ATTAAT" + "TAATTA") + #371=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060520 (8 0) 1 1 1 0 178) + (CObjectList)) "AsiSI: 0 sites") 5 3 "GCGATCGC" + "CGCTAGCG") + #372=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060552 (8 0) 1 1 1 0 178) + (CObjectList)) "AvaI: 10 sites") 1 5 "CYCGRG" + "GRGCYC") + #373=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060584 (8 0) 1 1 1 0 178) + (CObjectList)) "AvaII: 14 sites") 1 4 "GGWCC" + "CCWGG") + #374=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060616 (8 0) 1 1 1 0 178) + (CObjectList)) "AvrII: 2 sites") 1 5 "CCTAGG" + "GGATCC") + #375=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060648 (8 0) 1 1 1 0 178) + (CObjectList)) "BaeI: 0 sites") 23 18 + "ACNNNNGTAYCNNNNNNNNNNNNN" + "TGNNNNCATRGNNNNNNNNNNNNN") + #376=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060680 (8 0) 1 1 1 0 178) + (CObjectList)) "BamHI: 0 sites") 1 5 "GGATCC" + "CCTAGG") + #377=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060848 (8 0) 1 1 1 0 178) + (CObjectList)) "BanI: 14 sites") 1 5 "GGYRCC" + "CCRYGG") + #378=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060880 (8 0) 1 1 1 0 178) + (CObjectList)) "BanII: 15 sites") 5 1 "GRGCYC" + "CYCGRG") + #379=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060912 (8 0) 1 1 1 0 178) + (CObjectList)) "BbeI: 2 sites") 5 1 "GGCGCC" + "CCGCGG") + #380=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060944 (8 0) 1 1 1 0 178) + (CObjectList)) "Bbr7I: 3 sites") 13 17 + "GAAGACNNNNNNNNNNNN" "CTTCTGNNNNNNNNNNNN") + #381=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060976 (8 0) 1 1 1 0 178) + (CObjectList)) "BbsI: 3 sites") 8 12 + "GAAGACNNNNNNN" "CTTCTGNNNNNNN") + #382=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061008 (8 0) 1 1 1 0 178) + (CObjectList)) "BbvCI: 3 sites") 2 5 "CCTCAGC" + "GGAGTCG") + #383=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061040 (8 0) 1 1 1 0 178) + (CObjectList)) "BbvI: 42 sites") 13 17 + "GCAGCNNNNNNNNNNNNN" "CGTCGNNNNNNNNNNNNN") + #384=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061072 (8 0) 1 1 1 0 178) + (CObjectList)) "BccI: 26 sites") 9 10 + "CCATCNNNNNN" "GGTAGNNNNNN") + #385=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061104 (8 0) 1 1 1 0 178) + (CObjectList)) "BceAI: 17 sites") 17 19 + "ACGGCNNNNNNNNNNNNNNN" "TGCCGNNNNNNNNNNNNNNN") + #386=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061136 (8 0) 1 1 1 0 178) + (CObjectList)) "BcefI: 17 sites") 17 18 + "ACGGCNNNNNNNNNNNNNN" "TGCCGNNNNNNNNNNNNNN") + #387=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061304 (8 0) 1 1 1 0 178) + (CObjectList)) "BcgI: 2 sites") 24 22 + "CGANNNNNNTGCNNNNNNNNNNNNN" + "GCTNNNNNNACGNNNNNNNNNNNNN") + #388=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061336 (8 0) 1 1 1 0 178) + (CObjectList)) "BciVI: 4 sites") 12 11 + "GTATCCNNNNNNN" "CATAGGNNNNNNN") + #389=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061368 (8 0) 1 1 1 0 178) + (CObjectList)) "BclI: 4 sites") 1 5 "TGATCA" + "ACTAGT") + #390=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061400 (8 0) 1 1 1 0 178) + (CObjectList)) "BfaI: 32 sites") 1 3 "CTAG" + "GATC") + #391=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061432 (8 0) 1 1 1 0 178) + (CObjectList)) "BfrBI: 3 sites") 3 3 "ATGCAT" + "TACGTA") + #392=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061464 (8 0) 1 1 1 0 178) + (CObjectList)) "BglI: 5 sites") 7 4 "GCCNNNNNGGC" + "CGGNNNNNCCG") + #393=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061496 (8 0) 1 1 1 0 178) + (CObjectList)) "BglII: 4 sites") 1 5 "AGATCT" + "TCTAGA") + #394=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061528 (8 0) 1 1 1 0 178) + (CObjectList + #395=(CGroupPar + (CParagraph 0 (10 #48# 0) 1 2 2 0 180) + (CObjectList + #396=(CLinePar + (CParagraph 0 (1 #48# 1) 1 2 2 0 + 191) " N1: 4993 " 1))))) + "BlpI: 1 site") 2 5 "GCTNAGC" "CGANTCG") + #397=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51060008 (8 0) 1 1 1 0 178) + (CObjectList)) "Bme1580I: 20 sites") 5 1 "GKGCMC" + "CMCGKG") + #398=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061560 (8 0) 1 1 1 0 178) + (CObjectList)) "BmgBI: 2 sites") 3 3 "CACGTC" + "GTGCAG") + #399=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061736 (8 0) 1 1 1 0 178) + (CObjectList)) "BmrI: 10 sites") 11 10 + "ACTGGGNNNNNN" "TGACCCNNNNNN") + #400=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061768 (8 0) 1 1 1 0 178) + (CObjectList + #401=(CGroupPar + (CParagraph 0 (10 #52# 0) 1 2 2 0 180) + (CObjectList + #402=(CLinePar + (CParagraph 0 (1 #52# 1) 1 2 2 0 + 191) " N1: 4865 " 1))))) + "BmtI: 1 site") 5 1 "GCTAGC" "CGATCG") + #403=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061800 (8 0) 1 1 1 0 178) + (CObjectList)) "BplI: 4 sites") 38 1 + "NNNNNNNNNNNNNNGAGNNNNNCTCNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNCTCNNNNNGAGNNNNNNNNNNNNNN") + #404=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061832 (8 0) 1 1 1 0 178) + (CObjectList)) "BpmI: 18 sites") 22 20 + "CTGGAGNNNNNNNNNNNNNNNNN" "GACCTCNNNNNNNNNNNNNNNNN") + #405=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061864 (8 0) 1 1 1 0 178) + (CObjectList)) "Bpu10I: 6 sites") 2 5 "CCTNAGC" + "GGANTCG") + #406=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061896 (8 0) 1 1 1 0 178) + (CObjectList)) "BpuEI: 9 sites") 22 20 + "CTTGAGNNNNNNNNNNNNNNNNN" "GAACTCNNNNNNNNNNNNNNNNN") + #407=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061928 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaAI: 6 sites") 3 3 "YACGTR" + "RTGCAY") + #408=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061960 (8 0) 1 1 1 0 178) + (CObjectList + #409=(CGroupPar + (CParagraph 0 (10 #58# 0) 1 2 2 0 180) + (CObjectList + #410=(CLinePar + (CParagraph 0 (1 #58# 1) 1 2 2 0 + 191) " N1: 4916 " 1))))) + "BsaBI: 1 site") 5 5 "GATNNNNATC" "CTANNNNTAG") + #411=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51061992 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaHI: 12 sites") 2 4 "GRCGYC" + "CYGCRG") + #412=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062024 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaI: 10 sites") 7 11 + "GGTCTCNNNNNN" "CCAGAGNNNNNN") + #413=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062192 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaJI: 65 sites") 1 5 "CCNNGG" + "GGNNCC") + #414=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062224 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaWI: 7 sites") 1 5 "WCCGGW" + "WGGCCW") + #415=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062256 (8 0) 1 1 1 0 178) + (CObjectList)) "BsaXI: 5 sites") 21 18 + "ACNNNNNCTCCNNNNNNNNNNN" "TGNNNNNGAGGNNNNNNNNNNN") + #416=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062288 (8 0) 1 1 1 0 178) + (CObjectList)) "BscAI: 28 sites") 9 11 + "GCATCNNNNNNN" "CGTAGNNNNNNN") + #417=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062320 (8 0) 1 1 1 0 178) + (CObjectList)) "BseMII: 28 sites") 15 13 + "CTCAGNNNNNNNNNNN" "GAGTCNNNNNNNNNNN") + #418=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062352 (8 0) 1 1 1 0 178) + (CObjectList)) "BseRI: 15 sites") 16 14 + "GAGGAGNNNNNNNNNNN" "CTCCTCNNNNNNNNNNN") + #419=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062384 (8 0) 1 1 1 0 178) + (CObjectList)) "BseYI: 19 sites") 1 5 "CCCAGC" + "GGGTCG") + #420=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062416 (8 0) 1 1 1 0 178) + (CObjectList)) "BsgI: 9 sites") 22 20 + "GTGCAGNNNNNNNNNNNNNNNNN" "CACGTCNNNNNNNNNNNNNNNNN") + #421=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062448 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiEI: 8 sites") 4 2 "CGRYCG" + "GCYRGC") + #422=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062480 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiHKAI: 12 sites") 5 1 "GWGCWC" + "CWCGWG") + #423=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062648 (8 0) 1 1 1 0 178) + (CObjectList)) "BsiWI: 0 sites") 1 5 "CGTACG" + "GCATGC") + #424=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062680 (8 0) 1 1 1 0 178) + (CObjectList)) "BslI: 41 sites") 7 4 + "CCNNNNNNNGG" "GGNNNNNNNCC") + #425=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062712 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmAI: 20 sites") 6 10 + "GTCTCNNNNNN" "CAGAGNNNNNN") + #426=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062744 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmBI: 2 sites") 7 11 + "CGTCTCNNNNNN" "GCAGAGNNNNNN") + #427=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062776 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmFI: 30 sites") 15 19 + "GGGACNNNNNNNNNNNNNNN" "CCCTGNNNNNNNNNNNNNNN") + #428=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062808 (8 0) 1 1 1 0 178) + (CObjectList)) "BsmI: 2 sites") 7 5 "GAATGCNN" + "CTTACGNN") + #429=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062840 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsp1286I: 33 sites") 5 1 "GDGCHC" + "CHCGDG") + #430=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062880 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsp24I: 12 sites") 24 19 + "GACNNNNNNTGGNNNNNNNNNNNNN" + "CTGNNNNNNACCNNNNNNNNNNNNN") + #431=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062920 (8 0) 1 1 1 0 178) + (CObjectList)) "BspCNI: 28 sites") 14 12 + "CTCAGNNNNNNNNNN" "GAGTCNNNNNNNNNN") + #432=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51062952 (8 0) 1 1 1 0 178) + (CObjectList + #433=(CGroupPar + (CParagraph 0 (10 #80# 0) 1 2 2 0 180) + (CObjectList + #434=(CLinePar + (CParagraph 0 (1 #80# 1) 1 2 2 0 + 191) " N1: 7305 " 1))))) + "BspEI: 1 site") 1 5 "TCCGGA" "AGGCCT") + #435=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063120 (8 0) 1 1 1 0 178) + (CObjectList)) "BspHI: 2 sites") 1 5 "TCATGA" + "AGTACT") + #436=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063152 (8 0) 1 1 1 0 178) + (CObjectList)) "BspMI: 3 sites") 10 14 + "ACCTGCNNNNNNNNN" "TGGACGNNNNNNNNN") + #437=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063184 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrBI: 5 sites") 3 3 "CCGCTC" + "GGCGAG") + #438=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063216 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrDI: 5 sites") 8 6 "GCAATGNNN" + "CGTTACNNN") + #439=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063248 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrFI: 12 sites") 1 5 "RCCGGY" + "YGGCCR") + #440=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51046360 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrGI: 2 sites") 1 5 "TGTACA" + "ACATGT") + #441=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063280 (8 0) 1 1 1 0 178) + (CObjectList)) "BsrI: 31 sites") 6 4 "ACTGGNN" + "TGACCNN") + #442=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063312 (8 0) 1 1 1 0 178) + (CObjectList)) "BssHII: 2 sites") 1 5 "GCGCGC" + "CGCGCG") + #443=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063344 (8 0) 1 1 1 0 178) + (CObjectList)) "BssSI: 3 sites") 1 5 "CACGAG" + "GTGCTC") + #444=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063376 (8 0) 1 1 1 0 178) + (CObjectList)) "BstAPI: 4 sites") 7 4 + "GCANNNNNTGC" "CGTNNNNNACG") + #445=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063408 (8 0) 1 1 1 0 178) + (CObjectList + #446=(CGroupPar + (CParagraph 0 (10 #90# 0) 1 2 2 0 180) + (CObjectList + #447=(CLinePar + (CParagraph 0 (1 #90# 1) 1 2 2 0 + 191) " N1: 5185 " 1))))) + "BstBI: 1 site") 2 4 "TTCGAA" "AAGCTT") + #448=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063576 (8 0) 1 1 1 0 178) + (CObjectList + #449=(CGroupPar + (CParagraph 0 (10 #91# 0) 1 2 2 0 180) + (CObjectList + #450=(CLinePar + (CParagraph 0 (1 #91# 1) 1 2 2 0 + 191) " N1: 3844 " 1))))) + "BstEII: 1 site") 1 6 "GGTNACC" "CCANTGG") + #451=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063608 (8 0) 1 1 1 0 178) + (CObjectList)) "BstF5I: 23 sites") 7 5 "GGATGNNN" + "CCTACNNN") + #452=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063640 (8 0) 1 1 1 0 178) + (CObjectList)) "BstKTI: 51 sites") 3 1 "GATC" + "CTAG") + #453=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063672 (8 0) 1 1 1 0 178) + (CObjectList)) "BstNI: 60 sites") 2 3 "CCWGG" + "GGWCC") + #454=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063704 (8 0) 1 1 1 0 178) + (CObjectList)) "BstUI: 31 sites") 2 2 "CGCG" + "GCGC") + #455=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063736 (8 0) 1 1 1 0 178) + (CObjectList)) "BstXI: 4 sites") 8 4 + "CCANNNNNNTGG" "GGTNNNNNNACC") + #456=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063768 (8 0) 1 1 1 0 178) + (CObjectList)) "BstYI: 22 sites") 1 5 "RGATCY" + "YCTAGR") + #457=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063800 (8 0) 1 1 1 0 178) + (CObjectList + #458=(CGroupPar + (CParagraph 0 (10 #98# 0) 1 2 2 0 180) + (CObjectList + #459=(CLinePar + (CParagraph 0 (1 #98# 1) 1 2 2 0 + 191) " N1: 9321 " 1))))) + "BstZ17I: 1 site") 3 3 "GTATAC" "CATATG") + #460=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063832 (8 0) 1 1 1 0 178) + (CObjectList)) "Bsu36I: 3 sites") 2 5 "CCTNAGG" + "GGANTCC") + #461=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51063864 (8 0) 1 1 1 0 178) + (CObjectList)) "BtgI: 10 sites") 1 5 "CCRYGG" + "GGYRCC") + #462=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064032 (8 0) 1 1 1 0 178) + (CObjectList)) "BthCI: 68 sites") 4 1 "GCNGC" + "CGNCG") + #463=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064064 (8 0) 1 1 1 0 178) + (CObjectList)) "BtsI: 16 sites") 8 6 "GCAGTGNNN" + "CGTCACNNN") + #464=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064096 (8 0) 1 1 1 0 178) + (CObjectList)) "Cac8I: 58 sites") 3 3 "GCNNGC" + "CGNNCG") + #465=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064128 (8 0) 1 1 1 0 178) + (CObjectList)) "CdiI: 20 sites") 4 4 "CATCG" + "GTAGC") + #466=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064160 (8 0) 1 1 1 0 178) + (CObjectList)) "ChaI: 51 sites") 5 1 "NGATCN" + "NCTAGN") + #467=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064192 (8 0) 1 1 1 0 178) + (CObjectList)) "CjeI: 35 sites") 26 20 + "CCANNNNNNGTNNNNNNNNNNNNNNNN" + "GGTNNNNNNCANNNNNNNNNNNNNNNN") + #468=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064224 (8 0) 1 1 1 0 178) + (CObjectList)) "CjePI: 32 sites") 26 20 + "CCANNNNNNNTCNNNNNNNNNNNNNNN" + "GGTNNNNNNNAGNNNNNNNNNNNNNNN") + #469=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064256 (8 0) 1 1 1 0 178) + (CObjectList)) "ClaI: 3 sites") 2 4 "ATCGAT" + "TAGCTA") + #470=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064288 (8 0) 1 1 1 0 178) + (CObjectList)) "Csp6I: 27 sites") 1 3 "GTAC" + "CATG") + #471=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064320 (8 0) 1 1 1 0 178) + (CObjectList)) "CviAII: 43 sites") 1 3 "CATG" + "GTAC") + #472=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064488 (8 0) 1 1 1 0 178) + (CObjectList)) "CviJI: 231 sites") 2 2 "RGCY" + "YCGR") + #473=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064520 (8 0) 1 1 1 0 178) + (CObjectList)) "DdeI: 32 sites") 1 4 "CTNAG" + "GANTC") + #474=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064552 (8 0) 1 1 1 0 178) + (CObjectList)) "DpnI: 51 sites") 2 2 "GATC" + "CTAG") + #475=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064584 (8 0) 1 1 1 0 178) + (CObjectList)) "DraI: 7 sites") 3 3 "TTTAAA" + "AAATTT") + #476=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064616 (8 0) 1 1 1 0 178) + (CObjectList)) "DraIII: 4 sites") 6 3 "CACNNNGTG" + "GTGNNNCAC") + #477=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064648 (8 0) 1 1 1 0 178) + (CObjectList)) "DrdI: 2 sites") 7 5 + "GACNNNNNNGTC" "CTGNNNNNNCAG") + #478=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064680 (8 0) 1 1 1 0 178) + (CObjectList)) "EaeI: 10 sites") 1 5 "YGGCCR" + "RCCGGY") + #479=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064712 (8 0) 1 1 1 0 178) + (CObjectList)) "EagI: 2 sites") 1 5 "CGGCCG" + "GCCGGC") + #480=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064744 (8 0) 1 1 1 0 178) + (CObjectList)) "EarI: 9 sites") 7 10 + "CTCTTCNNNNN" "GAGAAGNNNNN") + #481=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064776 (8 0) 1 1 1 0 178) + (CObjectList)) "EciI: 12 sites") 17 15 + "GGCGGANNNNNNNNNNNN" "CCGCCTNNNNNNNNNNNN") + #482=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064944 (8 0) 1 1 1 0 178) + (CObjectList)) "Eco57MI: 29 sites") 22 20 + "CTGRAGNNNNNNNNNNNNNNNNN" "GACYTCNNNNNNNNNNNNNNNNN") + #483=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51064976 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoHI: 19 sites") 1 6 "NCCSGGN" + "NGGSCCN") + #484=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065008 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoICRI: 5 sites") 3 3 "GAGCTC" + "CTCGAG") + #485=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065040 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoNI: 2 sites") 5 6 + "CCTNNNNNAGG" "GGANNNNNTCC") + #486=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065072 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoO109I: 9 sites") 2 5 "RGGNCCY" + "YCCNGGR") + #487=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065112 (8 0) 1 1 1 0 178) + (CObjectList + #488=(CGroupPar + (CParagraph 0 (10 #126# 0) 1 2 2 0 180) + (CObjectList + #489=(CLinePar + (CParagraph 0 (1 #126# 1) 1 2 2 0 + 191) " N1: 6181 " 1))))) + "EcoRI: 1 site") 1 5 "GAATTC" "CTTAAG") + #490=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065152 (8 0) 1 1 1 0 178) + (CObjectList)) "EcoRV: 3 sites") 3 3 "GATATC" + "CTATAG") + #491=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065184 (8 0) 1 1 1 0 178) + (CObjectList)) "EsaBC3I: 26 sites") 2 2 "TCGA" + "AGCT") + #492=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065216 (8 0) 1 1 1 0 178) + (CObjectList)) "FalI: 5 sites") 38 1 + "NNNNNNNNNNNNNNAAGNNNNNCTTNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNTTCNNNNNGAANNNNNNNNNNNNNN") + #493=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065248 (8 0) 1 1 1 0 178) + (CObjectList)) "FatI: 43 sites") 1 5 "NCATGN" + "NGTACN") + #494=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065416 (8 0) 1 1 1 0 178) + (CObjectList)) "FauI: 20 sites") 9 11 + "CCCGCNNNNNNN" "GGGCGNNNNNNN") + #495=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065448 (8 0) 1 1 1 0 178) + (CObjectList)) "FmuI: 42 sites") 4 1 "GGNCC" + "CCNGG") + #496=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065480 (8 0) 1 1 1 0 178) + (CObjectList)) "Fnu4HI: 68 sites") 2 3 "GCNGC" + "CGNCG") + #497=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065512 (8 0) 1 1 1 0 178) + (CObjectList)) "FokI: 23 sites") 14 18 + "GGATGNNNNNNNNNNNNNN" "CCTACNNNNNNNNNNNNNN") + #498=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065544 (8 0) 1 1 1 0 178) + (CObjectList + #499=(CGroupPar + (CParagraph 0 (10 #135# 0) 1 2 2 0 180) + (CObjectList + #500=(CLinePar + (CParagraph 0 (1 #135# 1) 1 2 2 0 + 191) " N1: 8961 " 1))))) + "FseI: 1 site") 6 2 "GGCCGGCC" "CCGGCCGG") + #501=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065576 (8 0) 1 1 1 0 178) + (CObjectList)) "FspAI: 0 sites") 4 4 "RTGCGCAY" + "YACGCGTR") + #502=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065608 (8 0) 1 1 1 0 178) + (CObjectList + #503=(CGroupPar + (CParagraph 0 (10 #137# 0) 1 2 2 0 180) + (CObjectList + #504=(CLinePar + (CParagraph 0 (1 #137# 1) 1 2 2 0 + 191) " N1: 10815 " 1))))) + "FspI: 1 site") 3 3 "TGCGCA" "ACGCGT") + #505=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065640 (8 0) 1 1 1 0 178) + (CObjectList)) "GdiII: 10 sites") 1 5 "CGGCCR" + "GCCGGY") + #506=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065672 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeI: 16 sites") 3 3 "WGGCCW" + "WCCGGW") + #507=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065704 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeII: 7 sites") 5 1 "RGCGCY" + "YCGCGR") + #508=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065872 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeIII: 56 sites") 2 2 "GGCC" + "CCGG") + #509=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065904 (8 0) 1 1 1 0 178) + (CObjectList)) "HaeIV: 7 sites") 40 1 + "NNNNNNNNNNNNNNNGAYNNNNNRTCNNNNNNNNNNNNNNN" + "NNNNNNNNNNNNNNNCTRNNNNNYAGNNNNNNNNNNNNNNN") + #510=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065936 (8 0) 1 1 1 0 178) + (CObjectList)) "HgaI: 14 sites") 10 15 + "GACGCNNNNNNNNNNN" "CTGCGNNNNNNNNNNN") + #511=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51065968 (8 0) 1 1 1 0 178) + (CObjectList)) "HhaI: 44 sites") 3 1 "GCGC" + "CGCG") + #512=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066000 (8 0) 1 1 1 0 178) + (CObjectList)) "Hin4I: 26 sites") 24 19 + "GAYNNNNNVTCNNNNNNNNNNNNNN" + "CTRNNNNNBAGNNNNNNNNNNNNNN") + #513=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066032 (8 0) 1 1 1 0 178) + (CObjectList)) "HincII: 8 sites") 3 3 "GTYRAC" + "CARYTG") + #514=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066064 (8 0) 1 1 1 0 178) + (CObjectList)) "HindIII: 5 sites") 1 5 "AAGCTT" + "TTCGAA") + #515=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066096 (8 0) 1 1 1 0 178) + (CObjectList)) "HinfI: 26 sites") 1 4 "GANTC" + "CTNAG") + #516=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066128 (8 0) 1 1 1 0 178) + (CObjectList)) "HinP1I: 44 sites") 1 3 "GCGC" + "CGCG") + #517=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066160 (8 0) 1 1 1 0 178) + (CObjectList + #518=(CGroupPar + (CParagraph 0 (10 #150# 0) 1 2 2 0 180) + (CObjectList + #519=(CLinePar + (CParagraph 0 (1 #150# 1) 1 2 2 0 + 191) " N1: 6080 " 1))))) + "HpaI: 1 site") 3 3 "GTTAAC" "CAATTG") + #520=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066328 (8 0) 1 1 1 0 178) + (CObjectList)) "HpaII: 40 sites") 1 3 "CCGG" + "GGCC") + #521=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066360 (8 0) 1 1 1 0 178) + (CObjectList)) "HphI: 25 sites") 13 12 + "GGTGANNNNNNNNN" "CCACTNNNNNNNNN") + #522=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066392 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy188I: 34 sites") 3 2 "TCNGA" + "AGNCT") + #523=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066424 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy188III: 33 sites") 2 4 + "TCNNGA" "AGNNCT") + #524=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066464 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy8I: 29 sites") 3 3 "GTNNAC" + "CANNTG") + #525=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066504 (8 0) 1 1 1 0 178) + (CObjectList)) "Hpy99I: 17 sites") 6 1 "NCGWCGN" + "NGCWGCN") + #526=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066536 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyAV: 34 sites") 11 10 + "CCTTCNNNNNNN" "GGAAGNNNNNNN") + #527=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066568 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4I: 43 sites") 3 1 "CATG" + "GTAC") + #528=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066600 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4III: 28 sites") 3 2 "ACNGT" + "TGNCA") + #529=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066640 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4IV: 26 sites") 1 3 "ACGT" + "TGCA") + #530=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066816 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyCH4V: 47 sites") 2 2 "TGCA" + "ACGT") + #531=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066856 (8 0) 1 1 1 0 178) + (CObjectList)) "HpyF10VI: 71 sites") 8 3 + "GCNNNNNNNGC" "CGNNNNNNNCG") + #532=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066896 (8 0) 1 1 1 0 178) + (CObjectList)) "KasI: 2 sites") 1 5 "GGCGCC" + "CCGCGG") + #533=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066936 (8 0) 1 1 1 0 178) + (CObjectList)) "KpnI: 4 sites") 5 1 "GGTACC" + "CCATGG") + #534=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51066968 (8 0) 1 1 1 0 178) + (CObjectList)) "LpnI: 7 sites") 3 3 "RGCGCY" + "YCGCGR") + #535=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067000 (8 0) 1 1 1 0 178) + (CObjectList)) "MaeIII: 30 sites") 1 6 "NGTNACN" + "NCANTGN") + #536=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067032 (8 0) 1 1 1 0 178) + (CObjectList)) "MboI: 51 sites") 1 5 "NGATCN" + "NCTAGN") + #537=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067064 (8 0) 1 1 1 0 178) + (CObjectList)) "MboII: 34 sites") 13 12 + "GAAGANNNNNNNNN" "CTTCTNNNNNNNNN") + #538=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067096 (8 0) 1 1 1 0 178) + (CObjectList)) "MfeI: 2 sites") 1 5 "CAATTG" + "GTTAAC") + #539=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067128 (8 0) 1 1 1 0 178) + (CObjectList)) "MluI: 2 sites") 1 5 "ACGCGT" + "TGCGCA") + #540=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067296 (8 0) 1 1 1 0 178) + (CObjectList)) "MlyI: 16 sites") 10 10 + "GAGTCNNNNNN" "CTCAGNNNNNN") + #541=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067328 (8 0) 1 1 1 0 178) + (CObjectList)) "MmeI: 10 sites") 26 24 + "TCCRACNNNNNNNNNNNNNNNNNNNNN" + "AGGYTGNNNNNNNNNNNNNNNNNNNNN") + #542=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067360 (8 0) 1 1 1 0 178) + (CObjectList)) "MnlI: 123 sites") 11 10 + "CCTCNNNNNNNN" "GGAGNNNNNNNN") + #543=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067392 (8 0) 1 1 1 0 178) + (CObjectList)) "MscI: 2 sites") 3 3 "TGGCCA" + "ACCGGT") + #544=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067424 (8 0) 1 1 1 0 178) + (CObjectList)) "MseI: 44 sites") 1 3 "TTAA" + "AATT") + #545=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067456 (8 0) 1 1 1 0 178) + (CObjectList)) "MslI: 9 sites") 5 5 "CAYNNNNRTG" + "GTRNNNNYAC") + #546=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067488 (8 0) 1 1 1 0 178) + (CObjectList)) "MspA1I: 14 sites") 3 3 "CMGCKG" + "GKCGMC") + #547=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067520 (8 0) 1 1 1 0 178) + (CObjectList)) "MwoI: 71 sites") 7 4 + "GCNNNNNNNGC" "CGNNNNNNNCG") + #548=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067552 (8 0) 1 1 1 0 178) + (CObjectList)) "NaeI: 6 sites") 3 3 "GCCGGC" + "CGGCCG") + #549=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067584 (8 0) 1 1 1 0 178) + (CObjectList)) "NarI: 2 sites") 2 4 "GGCGCC" + "CCGCGG") + #550=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067752 (8 0) 1 1 1 0 178) + (CObjectList)) "NciI: 19 sites") 2 3 "CCSGG" + "GGSCC") + #551=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067784 (8 0) 1 1 1 0 178) + (CObjectList)) "NcoI: 6 sites") 1 5 "CCATGG" + "GGTACC") + #552=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067816 (8 0) 1 1 1 0 178) + (CObjectList + #553=(CGroupPar + (CParagraph 0 (10 #183# 0) 1 2 2 0 180) + (CObjectList + #554=(CLinePar + (CParagraph 0 (1 #183# 1) 1 2 2 0 + 191) " N1: 488 " 1))))) + "NdeI: 1 site") 2 4 "CATATG" "GTATAC") + #555=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067848 (8 0) 1 1 1 0 178) + (CObjectList)) "NgoMIV: 6 sites") 1 5 "GCCGGC" + "CGGCCG") + #556=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067880 (8 0) 1 1 1 0 178) + (CObjectList + #557=(CGroupPar + (CParagraph 0 (10 #185# 0) 1 2 2 0 180) + (CObjectList + #558=(CLinePar + (CParagraph 0 (1 #185# 1) 1 2 2 0 + 191) " N1: 4861 " 1))))) + "NheI: 1 site") 1 5 "GCTAGC" "CGATCG") + #559=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067912 (8 0) 1 1 1 0 178) + (CObjectList)) "NlaIII: 43 sites") 5 1 "NCATGN" + "NGTACN") + #560=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067944 (8 0) 1 1 1 0 178) + (CObjectList)) "NlaIV: 41 sites") 3 3 "GGNNCC" + "CCNNGG") + #561=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51067976 (8 0) 1 1 1 0 178) + (CObjectList)) "Nli3877I: 10 sites") 5 1 "CYCGRG" + "GRGCYC") + #562=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068016 (8 0) 1 1 1 0 178) + (CObjectList + #563=(CGroupPar + (CParagraph 0 (10 #189# 0) 1 2 2 0 180) + (CObjectList + #564=(CLinePar + (CParagraph 0 (1 #189# 1) 1 2 2 0 + 191) " N1: 1526 " 1))))) + "NotI: 1 site") 2 6 "GCGGCCGC" "CGCCGGCG") + #565=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068056 (8 0) 1 1 1 0 178) + (CObjectList)) "NruI: 2 sites") 3 3 "TCGCGA" + "AGCGCT") + #566=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068224 (8 0) 1 1 1 0 178) + (CObjectList)) "NsiI: 3 sites") 5 1 "ATGCAT" + "TACGTA") + #567=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068256 (8 0) 1 1 1 0 178) + (CObjectList)) "NspI: 5 sites") 5 1 "RCATGY" + "YGTACR") + #568=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068288 (8 0) 1 1 1 0 178) + (CObjectList + #569=(CGroupPar + (CParagraph 0 (10 #193# 0) 1 2 2 0 180) + (CObjectList + #570=(CLinePar + (CParagraph 0 (1 #193# 1) 1 2 2 0 + 191) " N1: 2599 " 1))))) + "PacI: 1 site") 5 3 "TTAATTAA" "AATTAATT") + #571=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068320 (8 0) 1 1 1 0 178) + (CObjectList)) "PciI: 2 sites") 1 5 "ACATGT" + "TGTACA") + #572=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068352 (8 0) 1 1 1 0 178) + (CObjectList)) "PflMI: 2 sites") 7 4 + "CCANNNNNTGG" "GGTNNNNNACC") + #573=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068384 (8 0) 1 1 1 0 178) + (CObjectList)) "PfoI: 7 sites") 1 6 "TCCNGGA" + "AGGNCCT") + #574=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068416 (8 0) 1 1 1 0 178) + (CObjectList)) "PleI: 16 sites") 9 10 + "GAGTCNNNNNN" "CTCAGNNNNNN") + #575=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068448 (8 0) 1 1 1 0 178) + (CObjectList + #576=(CGroupPar + (CParagraph 0 (10 #198# 0) 1 2 2 0 180) + (CObjectList + #577=(CLinePar + (CParagraph 0 (1 #198# 1) 1 2 2 0 + 191) " N1: 7508 " 1))))) + "PmeI: 1 site") 4 4 "GTTTAAAC" "CAAATTTG") + #578=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068480 (8 0) 1 1 1 0 178) + (CObjectList)) "PmlI: 4 sites") 3 3 "CACGTG" + "GTGCAC") + #579=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068512 (8 0) 1 1 1 0 178) + (CObjectList)) "PpiI: 5 sites") 25 20 + "GAACNNNNNCTCNNNNNNNNNNNNNN" + "CTTGNNNNNGAGNNNNNNNNNNNNNN") + #580=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068680 (8 0) 1 1 1 0 178) + (CObjectList)) "Ppu10I: 3 sites") 1 5 "ATGCAT" + "TACGTA") + #581=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068712 (8 0) 1 1 1 0 178) + (CObjectList)) "PpuMI: 3 sites") 2 5 "RGGWCCY" + "YCCWGGR") + #582=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068744 (8 0) 1 1 1 0 178) + (CObjectList)) "PshAI: 0 sites") 5 5 "GACNNNNGTC" + "CTGNNNNCAG") + #583=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068776 (8 0) 1 1 1 0 178) + (CObjectList)) "PsiI: 2 sites") 3 3 "TTATAA" + "AATATT") + #584=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068808 (8 0) 1 1 1 0 178) + (CObjectList)) "Psp03I: 14 sites") 4 1 "GGWCC" + "CCWGG") + #585=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068840 (8 0) 1 1 1 0 178) + (CObjectList)) "PspGI: 60 sites") 1 6 "NCCWGGN" + "NGGWCCN") + #586=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068872 (8 0) 1 1 1 0 178) + (CObjectList)) "PspOMI: 4 sites") 1 5 "GGGCCC" + "CCCGGG") + #587=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068904 (8 0) 1 1 1 0 178) + (CObjectList)) "PsrI: 0 sites") 25 20 + "GAACNNNNNNTACNNNNNNNNNNNNN" + "CTTGNNNNNNATGNNNNNNNNNNNNN") + #588=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068936 (8 0) 1 1 1 0 178) + (CObjectList)) "PssI: 9 sites") 5 2 "RGGNCCY" + "YCCNGGR") + #589=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51068968 (8 0) 1 1 1 0 178) + (CObjectList)) "PstI: 5 sites") 5 1 "CTGCAG" + "GACGTC") + #590=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069136 (8 0) 1 1 1 0 178) + (CObjectList + #591=(CGroupPar + (CParagraph 0 (10 #211# 0) 1 2 2 0 180) + (CObjectList + #592=(CLinePar + (CParagraph 0 (1 #211# 1) 1 2 2 0 + 191) " N1: 10963 " 1))))) + "PvuI: 1 site") 4 2 "CGATCG" "GCTAGC") + #593=(CRSFolderPar + (CFolderPar + (CGroupPar (CParagraph 51069168 (8 0) 1 1 1 0 178) + (CObjectList)) "PvuII: 4 sites") 3 3 "CAGCTG" + "GTCGAC") + #594=(CRSFolderPar + (CFolderPar + (CGroupPar 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+ pydna cdseguid=fLRW6jTMqqwZCbIFOGyl1TdDbrs 2024-06-11T18:40:52 FEATURES Location/Qualifiers LTR 7317..7497 /vntifkey="19" - /label=3'LTR + /label="3'LTR" misc_feature 6194..6802 /vntifkey="21" - /label=WPRE + /label="WPRE" LTR 835..1015 /vntifkey="19" - /label=5'LTR + /label="5'LTR" misc_binding 1691..1895 /vntifkey="20" - /label=RRE + /label="RRE" promoter 2602..4807 /vntifkey="29" - /label=GFAP + /label="GFAP" misc_feature 5019..5021 /vntifkey="21" - /label=M153K + /label="M153K" misc_feature 5169..5171 /vntifkey="21" - /label=T203V + /label="T203V" misc_feature 5910..5912 /vntifkey="21" - /label=N60D + /label="N60D" misc_feature 4827..6179 /vntifkey="21" - /label=GCaMP3 -BASE COUNT 2884 a 2911 c 3098 g 2619 t + /label="GCaMP3" ORIGIN 1 gtcgacggat cgggagatct cccgatcccc tatggtgcac tctcagtaca atctgctctg 61 atgccgcata gttaagccag tatctgctcc ctgcttgtgt gttggaggtc gctgagtagt diff --git a/tests/broken_genbank_files/fakeGenBankFile.gb b/tests/broken_genbank_files/fakeGenBankFile.gb index 1368271d..e47e82a9 100644 --- a/tests/broken_genbank_files/fakeGenBankFile.gb +++ b/tests/broken_genbank_files/fakeGenBankFile.gb @@ -6,6 +6,7 @@ KEYWORDS . SOURCE . ORGANISM . . +COMMENT pydna cdseguid=cJQ-aN4c5sLYq7FcNLKr5ZVSdSM 2024-06-11T18:43:13 FEATURES Location/Qualifiers ORIGIN 1 acctgtagta atctggcctt cgggtccgcc attataacga cagcggagtc tagaggtatg diff --git a/tests/broken_genbank_files/pGADT7-Rec.gb b/tests/broken_genbank_files/pGADT7-Rec.gb index f9cb3de8..6fd6f259 100644 --- a/tests/broken_genbank_files/pGADT7-Rec.gb +++ b/tests/broken_genbank_files/pGADT7-Rec.gb @@ -1,32 +1,40 @@ -LOCUS pGADT7-Rec 8058 bp DNA circular 23-DEC-2010 +LOCUS pGADT7-Rec 8058 bp DNA circular UNK 23-DEC-2010 +DEFINITION . +ACCESSION pGADT7-Rec +VERSION pGADT7-Rec +KEYWORDS . +SOURCE + ORGANISM . + . COMMENT Created by Clontech Laboratories Inc. http://www.clontech.com -COMMENT Cat. No. 630471,630477,630478,630469,630491,630468,630490,630470,630476 + Cat. No. + 630471,630477,630478,630469,630491,630468,630490,630470,630476 + pydna cdseguid=L0wFG4Mx6rWMYej1cNpCqSYGOd0 2024-06-11T18:40:54 FEATURES Location/Qualifiers misc_feature 7..1478 - /label=ADH1\Promoter + /label="ADH1\Promoter" misc_feature 1500..1556 - /label=SV40\NLS + /label="SV40\NLS" misc_feature 1560..1898 - /label=GAL4\AD + /label="GAL4\AD" misc_feature 1904..1926 - /label=T7\Promoter + /label="T7\Promoter" misc_feature 1941..1967 - /label=Hemagglutinin\(HA)\tag + /label="Hemagglutinin\(HA)\tag" misc_feature 2000..2035 - /label=SMART\III\Oligonucleotide\Sequence + /label="SMART\III\Oligonucleotide\Sequence" misc_feature 2046..2070 - /label=CDS\III\Sequence + /label="CDS\III\Sequence" misc_feature 2350..2675 - /label=ADH1\Transcription\terminator + /label="ADH1\Transcription\terminator" misc_feature complement(2793..3884) - /label=LEU2 + /label="LEU2" misc_feature 4651..5488 - /label=pUC\origin + /label="pUC\origin" misc_feature complement(5645..6502) - /label=Amp(R) + /label="Amp(R)" misc_feature 7068..8058 - /label=2\micron\origin -BASE COUNT 2302 a 1793 c 1716 g 2247 t + /label="2\micron\origin" ORIGIN 1 tgcatgcctg caggtcgaga tccgggatcg aagaaatgat ggtaaatgaa ataggaaatc 61 aaggagcatg aaggcaaaag acaaatataa gggtcgaacg aaaaataaag tgaaaagtgt diff --git a/tests/broken_genbank_files/pGreenLantern1.gb b/tests/broken_genbank_files/pGreenLantern1.gb index a282f466..fbdde2f7 100644 --- a/tests/broken_genbank_files/pGreenLantern1.gb +++ b/tests/broken_genbank_files/pGreenLantern1.gb @@ -1,11 +1,12 @@ LOCUS pGreenLantern1 5032 bp DNA circular UNK 21-NOV-2016 -DEFINITION @ +DEFINITION @. ACCESSION - VERSION - KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=6aQYj1jGyCAyzAoQf2dyXZIpxlA 2024-06-11T18:53:12 FEATURES Location/Qualifiers source 4314..5030 /db_xref="taxon:32630" diff --git a/tests/broken_genbank_files/sequence.gb b/tests/broken_genbank_files/sequence.gb index 69938485..e2ce1d7d 100644 --- a/tests/broken_genbank_files/sequence.gb +++ b/tests/broken_genbank_files/sequence.gb @@ -7,8 +7,8 @@ KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; - Actinopterygii; Neopterygii; Teleostei; Ostariophysi; - Cypriniformes; Cyprinidae; Danio. + Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; + Cyprinidae; Danio. REFERENCE 1 (bases 1 to 1466) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., @@ -18,16 +18,16 @@ REFERENCE 1 (bases 1 to 1466) Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., - Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., - McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., - Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., - Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., - Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., - Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., - Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., - Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., - Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., - Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. + Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., + Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., + Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., + Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., + Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., + Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., + Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., + Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., + Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., + Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences @@ -50,12 +50,12 @@ COMMENT Contact: MGC help desk Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. - Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 165 Row: c Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37748472. + pydna ldseguid=_GHnVotdYSxAKX2bAUIa10ZZDhE 2024-06-11T18:53:28 FEATURES Location/Qualifiers source 1..1466 /organism="Danio rerio" @@ -87,9 +87,9 @@ FEATURES Location/Qualifiers /protein_id="AAH68339.1" /db_xref="GeneID:336121" /db_xref="ZFIN:ZDB-GENE-030804-3" - /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP - TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYIS - AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" + /translation="MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT + EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA + ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" ORIGIN 1 gtggactgtt gttctgtgtg gaaatacatc tgctaaaaca gcgcgatggc tgaccagttg 61 acagaagagc agatcgccga attcaaagag gctttctcac tctttgataa agacggtgat diff --git a/tests/dna2943.gb b/tests/dna2943.gb index 7c9a170a..1089f1d7 100644 --- a/tests/dna2943.gb +++ b/tests/dna2943.gb @@ -1,43 +1,49 @@ -LOCUS dna2943._Coding_seq_of_ 1495 bp ds-DNA linear 03-JUN-2022 +LOCUS dna2943._Coding_seq_of_ 1495 bp ds-DNA linear UNK 03-JUN-2022 DEFINITION . -KEYWORDS "creator:synthetic biology" +ACCESSION dna2943._Coding_seq_of_ +VERSION dna2943._Coding_seq_of_ +KEYWORDS "creator:synthetic biology". +SOURCE + ORGANISM . + . +COMMENT pydna ldseguid=ScLoSddUf2c0GIAGpvIi33nLvFY 2024-06-11T18:43:13 FEATURES Location/Qualifiers misc_feature 13..16 /label="overhang 3" - /ApEinfo_revcolor=#b4abac - /ApEinfo_fwdcolor=#b4abac + /ApEinfo_revcolor="#b4abac" + /ApEinfo_fwdcolor="#b4abac" CDS 13..37 /label="linker3 (GGGGS)4" - /ApEinfo_revcolor=#85dae9 - /ApEinfo_fwdcolor=#85dae9 + /ApEinfo_revcolor="#85dae9" + /ApEinfo_fwdcolor="#85dae9" CDS 38..1468 /label="luxC" - /ApEinfo_revcolor=#993366 - /ApEinfo_fwdcolor=#993366 + /ApEinfo_revcolor="#993366" + /ApEinfo_fwdcolor="#993366" ORIGIN - 1 atcggaagac aaCGGAGGTA GTGGTGGCGG AGGTAGTATG GAAAAGCATT TGCCCTTGAT - 61 TATCAATGGT CTGATTTGCT CTACGGGGCG CGGTAGTCAT GAGATCACTT TTGAAGAAAA - 121 TAAAGTTAAA ATCGATGCTT TCAATGTTGA GCATGTTTCT CAGATGcttA GTCAGGATTT - 181 TTTGATTGAT CTGGATATTA ATAACATTGT TAATTTTCTG TATGCAGTGG GACAACGCTG - 241 GAAGAATGAA GAGTATTCTC GCCGCCGCAC GTACATTCGC AACCTGATTA CCTACTTGGG - 301 TTATTCACCA CAAATGGCAA AATTGGAGGC CAATTGGATC GCAATGATTC TGTGCTCTAA - 361 AAGTGCCCTG TATGACATTG TGAATACTGA GCTTGGGTCA ACGCATATTC AAGATGAGTG - 421 GCTTCCGCAA GGGGAGTGTT ATGTACGCGC ATTCCCTAAA GGGCGCGTCA TGCACCTGTT - 481 GGCAGGTAAT GTTCCCCTTT CCGGTGTGAC ATCAATCTTG CGCGGCATTC TGACTAAAAA - 541 TCAATGCATC GTACGCATGA GCGCTTCCGA TCCATTTACT GCGCATGCAT TGGCAATGAG - 601 TTTTATTGAC GTCAATCCGG ACCACCCAAT TTCTAAGAGC ATCTCTGTAC TGTATTGGCC - 661 ACATAAAGCT GATACGACAA TTGCGgagGA GCTGATTAGT CATATGGATG CGGTTGTTGC - 721 TTGGGGAGGG CATGATGCTA TTGATTGGGC GGTTAAGCAT TCCCCTTCAC ATATTGATGT - 781 TTTGAAGTTC GGCCCTAAAA AAAGTTTTAC TATTCTGGAT GAACCGACCA ACTTGGATGA - 841 AGCGGCTTCC GGCGCCGCTC ATGATATTTG CTTCTATGAC CAGAATGCTT GTTTCTCTAC - 901 CCAGAATATC TACTTTTGTG GAGATAACTA CGAAGCTTTT AAGGATAAGT TGGTAGAAAA - 961 ACTGTGTCTT TATGAAAATA TTCTTCCGAA GTCTCGCCAA AGTTTTGATG AAGAAGCTTT - 1021 GTTTTCATTT ACTCGCTTGG AATGTCAATT CTCAGGTCTT AACATTATCT CCGAACCAAA - 1081 TAATAAGTGG ATGATTATTG AATCAGACGC TGGTGTCGAA TACAACCACC CTctcAGTCG - 1141 CTGTGTCTAT ATCCATAAAA TTAATAAGGT GGAAGATGTT GTTGATTATA TCGACAAGCA - 1201 TAAAACTCAA ACGATTTCTT TTTATCCTTG GAGTTCTTCA ACTAAATACC GCGATATCTT - 1261 TGCTCAAAAA GGCGTTGAGC GCATTGTTGA ATCCGGCATG AATAATATCT TTCGCGCGGG - 1321 TGGTGCACAT GATgccATGC GCCCACTGCA ACGCCTGGTT CGCTTTGTCT CTCACGAACG - 1381 CCCATATAGT TTCACCACCA AGGATGTCTC TGTTGAAATT GAACAAACTC GCTTTCTTGA - 1441 AGAAGATAAG TTCTTGGTTT TTGTCCCTTA AtgaagagcA GGTtagtctt cattc + 1 atcggaagac aacggaggta gtggtggcgg aggtagtatg gaaaagcatt tgcccttgat + 61 tatcaatggt ctgatttgct ctacggggcg cggtagtcat gagatcactt ttgaagaaaa + 121 taaagttaaa atcgatgctt tcaatgttga gcatgtttct cagatgctta gtcaggattt + 181 tttgattgat ctggatatta ataacattgt taattttctg tatgcagtgg gacaacgctg + 241 gaagaatgaa gagtattctc gccgccgcac gtacattcgc aacctgatta cctacttggg + 301 ttattcacca caaatggcaa aattggaggc caattggatc gcaatgattc tgtgctctaa + 361 aagtgccctg tatgacattg tgaatactga gcttgggtca acgcatattc aagatgagtg + 421 gcttccgcaa ggggagtgtt atgtacgcgc attccctaaa gggcgcgtca tgcacctgtt + 481 ggcaggtaat gttccccttt ccggtgtgac atcaatcttg cgcggcattc tgactaaaaa + 541 tcaatgcatc gtacgcatga gcgcttccga tccatttact gcgcatgcat tggcaatgag + 601 ttttattgac gtcaatccgg accacccaat ttctaagagc atctctgtac tgtattggcc + 661 acataaagct gatacgacaa ttgcggagga gctgattagt catatggatg cggttgttgc + 721 ttggggaggg catgatgcta ttgattgggc ggttaagcat tccccttcac atattgatgt + 781 tttgaagttc ggccctaaaa aaagttttac tattctggat gaaccgacca acttggatga + 841 agcggcttcc ggcgccgctc atgatatttg cttctatgac cagaatgctt gtttctctac + 901 ccagaatatc tacttttgtg gagataacta cgaagctttt aaggataagt tggtagaaaa + 961 actgtgtctt tatgaaaata ttcttccgaa gtctcgccaa agttttgatg aagaagcttt + 1021 gttttcattt actcgcttgg aatgtcaatt ctcaggtctt aacattatct ccgaaccaaa + 1081 taataagtgg atgattattg aatcagacgc tggtgtcgaa tacaaccacc ctctcagtcg + 1141 ctgtgtctat atccataaaa ttaataaggt ggaagatgtt gttgattata tcgacaagca + 1201 taaaactcaa acgatttctt tttatccttg gagttcttca actaaatacc gcgatatctt + 1261 tgctcaaaaa ggcgttgagc gcattgttga atccggcatg aataatatct ttcgcgcggg + 1321 tggtgcacat gatgccatgc gcccactgca acgcctggtt cgctttgtct ctcacgaacg + 1381 cccatatagt ttcaccacca aggatgtctc tgttgaaatt gaacaaactc gctttcttga + 1441 agaagataag ttcttggttt ttgtccctta atgaagagca ggttagtctt cattc // diff --git a/tests/dna2943_mod.gb b/tests/dna2943_mod.gb index 555b407e..f19f5450 100644 --- a/tests/dna2943_mod.gb +++ b/tests/dna2943_mod.gb @@ -3,9 +3,10 @@ DEFINITION description. ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna ldseguid=ScLoSddUf2c0GIAGpvIi33nLvFY 2024-06-11T18:40:49 FEATURES Location/Qualifiers ORIGIN 1 atcggaagac aacggaggta gtggtggcgg aggtagtatg gaaaagcatt tgcccttgat diff --git a/tests/example.ipynb b/tests/example.ipynb new file mode 100644 index 00000000..13ceae5f --- /dev/null +++ b/tests/example.ipynb @@ -0,0 +1,455 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "157edf0d-1056-43b8-bcef-b676d9794192", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-9)\n", + "\u001b[48;5;11matgccctaa\u001b[0m\n", + "tacgggatt" + ] + }, + "execution_count": 1, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.dseqrecord import Dseqrecord\n", + "\n", + "dsr = Dseqrecord(\"atgccctaa\")\n", + "dsr.add_feature() # a small gene: atgccctaa\n", + "dsr.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "8a0c0235-b358-446f-88a5-0a8a28408399", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "5atg...taa3\n", + " |||\n", + " 3att5\n", + "5atg3\n", + " |||\n", + "3tac...att5" + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.design import primer_design\n", + "\n", + "amplicon = primer_design(dsr, limit=3, target_tm=0)\n", + "amplicon.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "54cfbab9-1f54-434a-a37a-819af88a3263", + "metadata": {}, + "outputs": [], + "source": [ + "forward_primer = \"ccccGGATCC\" + amplicon.forward_primer\n", + "reverse_primer = \"ttttGGATCC\" + amplicon.reverse_primer" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "332f14b9-a444-4aae-896b-2b3d53bacee5", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + " 5atg...taa3\n", + " |||\n", + " 3attCCTAGGtttt5\n", + "5ccccGGATCCatg3\n", + " |||\n", + " 3tac...att5" + ] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from pydna.amplify import pcr\n", + "\n", + "pcr_product = pcr(forward_primer, reverse_primer, dsr, limit=3)\n", + "pcr_product.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "12d6cf52-c50e-434b-bdb2-9eda540b4eae", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-29)\n", + "ccccGGATCC\u001b[48;5;11matgccctaa\u001b[0mGGATCCaaaa\n", + "ggggCCTAGGtacgggattCCTAGGtttt" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseqrecord(pcr_product).figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "39f030ff", + "metadata": { + "lines_to_next_cell": 0 + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Dseqrecord(-9)\n", + "\u001b[48;5;11m\u001b[0mccccG \n", + "ggggCCTAG\n", + "\n", + "Dseqrecord(-19)\n", + "GATCC\u001b[48;5;11matgccctaa\u001b[0mG \n", + " GtacgggattCCTAG\n", + "\n", + "Dseqrecord(-9)\n", + "\u001b[48;5;11m\u001b[0mGATCCaaaa\n", + " Gtttt\n" + ] + } + ], + "source": [ + "from Bio.Restriction import BamHI # cuts GGATCC\n", + "\n", + "a, b, c = pcr_product.cut(BamHI)\n", + "\n", + "print(a.figure())\n", + "print()\n", + "print(b.figure())\n", + "print()\n", + "print(c.figure())" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "ff017051-8946-474a-8bcc-1e9e6b6e0a48", + "metadata": {}, + "outputs": [], + "source": [ + "vector = Dseqrecord(\"aatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\", circular=True, name=\"vect\")" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "f51cd402-a788-4dbe-852c-4d9df340dac5", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o50)\n", + "\u001b[48;5;11m\u001b[0maatgtttttccctCCCGGGcaaaatAGATCTtgctatgcatcatcgatct\n", + "ttacaaaaagggaGGGCCCgttttaTCTAGAacgatacgtagtagctaga" + ] + }, + "execution_count": 8, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "vector.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "13cf920d-de6d-47d8-b693-4048e7af5d01", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o65)\n", + "aatgtttttccctCCCGGGcaaaatAGATCC\u001b[48;5;11matgccctaa\u001b[0mGGATCTtgctatgcatcatcgatct\n", + "ttacaaaaagggaGGGCCCgttttaTCTAGGtacgggattCCTAGAacgatacgtagtagctaga" + ] + }, + "execution_count": 9, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "from Bio.Restriction import BglII # cuts AGATCT\n", + "\n", + "linear_vector_bgl = vector.linearize(BglII)\n", + "\n", + "rec_vector = (linear_vector_bgl + b).looped().synced(vector)\n", + "\n", + "rec_vector.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "fcc9ba91-c373-47cc-ae54-4a481171a27a", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(-21)\n", + "cctCCC\u001b[48;5;11matgaaataa\u001b[0mGGGcaa\n", + "ggaGGGtactttattCCCgtt" + ] + }, + "execution_count": 10, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "gene2 = Dseqrecord(\"cctCCCatgaaataaGGGcaa\", name=\"gene2\")\n", + "gene2.add_feature(6, 15)\n", + "gene2.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "ef2659b0-581c-40b4-8fbb-1a3b9aa6f145", + "metadata": {}, + "outputs": [], + "source": [ + "from pydna.assembly import Assembly\n", + "from Bio.Restriction import SmaI # cuts CCCGGG\n", + "\n", + "linear_vector_sma = vector.linearize(SmaI)\n", + "\n", + "asm = Assembly((linear_vector_sma, gene2), limit=6)\n", + "\n", + "candidate, *rest = asm.assemble_circular()" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "id": "1c630121-b93f-49eb-81c5-6d6b9c455340", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + " -|vect_lin| 6\n", + "| \\/\n", + "| /\\\n", + "| 6|gene2| 6\n", + "| \\/\n", + "| /\\\n", + "| 6-\n", + "| |\n", + " -----------------------" + ] + }, + "execution_count": 12, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "candidate.figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "c5e96478-d655-4bf7-9188-454b4cd8c9d8", + "metadata": {}, + "outputs": [], + "source": [ + "candidate = candidate.synced(vector, limit=10)" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "5fecfd6c-a1da-4e8d-b090-f0fa54c02533", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Dseqrecord(o59)\n", + "aatgtttttccctCCC\u001b[48;5;11matgaaataa\u001b[0mGGGcaaaatAGATCTtgctatgcatcatcgatct\n", + "ttacaaaaagggaGGGtactttattCCCgttttaTCTAGAacgatacgtagtagctaga" + ] + }, + "execution_count": 14, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "Dseqrecord(candidate).figure()" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "id": "8c42ba40-f7c3-47c0-81f0-86cd249c5a02", + "metadata": {}, + "outputs": [], + "source": [ + "from pydna.gel import gel\n", + "from pydna.ladders import GeneRuler_1kb_plus" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "id": "3724afb9-545e-479a-8024-ff1d830a4716", + "metadata": {}, + "outputs": [], + "source": [ + "band = Dseqrecord(\"GATC\" * 500)" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "id": "02efdba4-c514-447d-b093-21b9b9011d47", + "metadata": {}, + "outputs": [], + "source": [ + "im = gel(\n", + " [\n", + " GeneRuler_1kb_plus,\n", + " [\n", + " band,\n", + " ],\n", + " ]\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 18, + "id": "b9348612-69b8-4fa6-8bd3-2c6d48c2b7b5", + "metadata": {}, + "outputs": [ + { + "data": { + "image/jpeg": 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+ "text/plain": [ + "" + ] + }, + "execution_count": 18, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "im.rotate(90, expand=1)" + ] + }, + { + "cell_type": "code", + "execution_count": 19, + "id": "6e458bc3-e6ca-45b0-9237-c9ac288b07e2", + "metadata": {}, + "outputs": [], + "source": [ + "from PIL import ImageOps" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "id": "3e3a744e-203f-4058-ae97-2d300e1da104", + "metadata": {}, + "outputs": [ + { + "data": { + "image/jpeg": 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", + "text/plain": [ + "" + ] + }, + "execution_count": 20, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "ImageOps.invert(im)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "c7909cef-0bed-497c-8823-675ad2d26e23", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "jupytext": { + "cell_metadata_filter": "-all", + "main_language": "python", + "notebook_metadata_filter": "-all" + }, + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/tests/format_sequences.ipynb b/tests/format_sequences.ipynb index ebaeb8b4..f4ec3a4c 100755 --- a/tests/format_sequences.ipynb +++ b/tests/format_sequences.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "metadata": {}, "outputs": [], "source": [ @@ -14,7 +14,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -31,7 +31,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -41,7 +41,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 4, "metadata": {}, "outputs": [], "source": [ @@ -50,7 +50,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 5, "metadata": {}, "outputs": [ { @@ -85,18 +85,7 @@ { "data": { "text/plain": [ - "LOCUS . 3 bp DNA linear UNK 20-DEC-2016\n", - "DEFINITION .\n", - "ACCESSION \n", - "VERSION \n", - "KEYWORDS .\n", - "SOURCE .\n", - " ORGANISM .\n", - " .\n", - "FEATURES Location/Qualifiers\n", - "ORIGIN\n", - " 1 aaa\n", - "//" + "'LOCUS . 3 bp DNA linear UNK 20-DEC-2016\\nDEFINITION .\\nACCESSION \\nVERSION \\nKEYWORDS .\\nSOURCE .\\n ORGANISM .\\n .\\nFEATURES Location/Qualifiers\\nORIGIN\\n 1 aaa\\n//'" ] }, "execution_count": 6, @@ -118,18 +107,7 @@ { "data": { "text/plain": [ - "LOCUS name 3 bp DNA linear UNK 20-DEC-2016\n", - "DEFINITION description.\n", - "ACCESSION id\n", - "VERSION id\n", - "KEYWORDS .\n", - "SOURCE .\n", - " ORGANISM .\n", - " .\n", - "FEATURES Location/Qualifiers\n", - "ORIGIN\n", - " 1 aaa\n", - "//" + "'LOCUS name 3 bp DNA linear UNK 20-DEC-2016\\nDEFINITION description.\\nACCESSION id\\nVERSION id\\nKEYWORDS .\\nSOURCE .\\n ORGANISM .\\n .\\nFEATURES Location/Qualifiers\\nORIGIN\\n 1 aaa\\n//'" ] }, "execution_count": 7, @@ -151,18 +129,7 @@ { "data": { "text/plain": [ - "LOCUS abc 3 bp DNA linear UNK 20-DEC-2016\n", - "DEFINITION abc.\n", - "ACCESSION abc\n", - "VERSION abc\n", - "KEYWORDS .\n", - "SOURCE .\n", - " ORGANISM .\n", - " .\n", - "FEATURES Location/Qualifiers\n", - "ORIGIN\n", - " 1 aaa\n", - "//" + "'LOCUS abc 3 bp DNA linear UNK 20-DEC-2016\\nDEFINITION abc.\\nACCESSION abc\\nVERSION abc\\nKEYWORDS .\\nSOURCE .\\n ORGANISM .\\n .\\nFEATURES Location/Qualifiers\\nORIGIN\\n 1 aaa\\n//'" ] }, "execution_count": 8, @@ -214,7 +181,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.8" + "version": "3.12.3" } }, "nbformat": 4, diff --git a/tests/jupyter_test_repr.ipynb b/tests/jupyter_test_repr.ipynb index 8d139dfa..e1794c27 100755 --- a/tests/jupyter_test_repr.ipynb +++ b/tests/jupyter_test_repr.ipynb @@ -1411,9 +1411,9 @@ "metadata": { "anaconda-cloud": {}, "kernelspec": { - "display_name": "Python [conda env:bjorn311]", + "display_name": ".venv", "language": "python", - "name": "conda-env-bjorn311-py" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -1425,7 +1425,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.7" + "version": "3.12.6" } }, "nbformat": 4, diff --git a/tests/my_test_enzymes.txt b/tests/my_test_enzymes.txt index 0096a838..2d135a03 100755 --- a/tests/my_test_enzymes.txt +++ b/tests/my_test_enzymes.txt @@ -1,3 +1,3 @@ -# All enzymes +# All 621 enzymes AanI AarI AasI AatII AbaSI AbsI Acc16I Acc36I Acc65I AccB1I AccB7I AccBSI AccI AccII AccIII AciI AclI AclWI AcoI AcsI AcuI AcvI AcyI AdeI AfaI AfeI AfiI AflII AflIII AgeI AgsI AhdI AhlI AjiI AjnI AjuI AleI AloI AluBI AluI Alw21I Alw26I Alw44I AlwI AlwNI Ama87I Aor13HI Aor51HI AoxI ApaI ApaLI ApeKI ApoI ArsI AscI AseI AsiGI AsiSI Asp700I Asp718I AspA2I AspLEI AspS9I AsuC2I AsuHPI AsuII AsuNHI AvaI AvaII AvrII AxyI BaeGI BaeI BalI BamHI BanI BanII BarI BauI BbrPI BbsI Bbv12I BbvCI BbvI BccI BceAI BcgI BciT130I BciVI BclI BcnI BcoDI BcuI BfaI BfmI BfoI BfrI BfuAI BfuI BglI BglII BisI BlnI BlpI BlsI BmcAI Bme1390I Bme18I BmeRI BmeT110I BmgBI BmgT120I BmiI BmrFI BmrI BmsI BmtI BmuI BoxI BpiI BplI BpmI Bpu10I Bpu1102I Bpu14I BpuEI BpuMI Bsa29I BsaAI BsaBI BsaHI BsaI BsaJI BsaWI BsaXI Bsc4I Bse118I Bse1I Bse21I Bse3DI Bse8I BseAI BseBI BseCI BseDI BseGI BseJI BseLI BseMI BseMII BseNI BsePI BseRI BseSI BseX3I BseXI BseYI BsgI Bsh1236I Bsh1285I BshFI BshNI BshTI BshVI BsiEI BsiHKAI BsiHKCI BsiSI BsiWI BslFI BslI BsmAI BsmBI BsmFI BsmI BsnI Bso31I BsoBI Bsp119I Bsp120I Bsp1286I Bsp13I Bsp1407I Bsp143I Bsp1720I Bsp19I Bsp68I BspACI BspANI BspCNI BspDI BspEI BspFNI BspHI BspLI BspMAI BspMI BspOI BspPI BspQI BspT104I BspT107I BspTI BspTNI BsrBI BsrDI BsrFI BsrGI BsrI BssAI BssECI BssHII BssMI BssNAI BssNI BssSI BssT1I Bst1107I Bst2BI Bst2UI Bst4CI Bst6I BstACI BstAFI BstAPI BstAUI BstBAI BstBI BstC8I BstDEI BstDSI BstEII BstENI BstF5I BstFNI BstH2I BstHHI BstKTI BstMAI BstMBI BstMCI BstMWI BstNI BstNSI BstPAI BstPI BstSCI BstSFI BstSLI BstSNI BstUI BstV1I BstV2I BstX2I BstXI BstYI BstZ17I BstZI Bsu15I Bsu36I BsuI BsuRI BsuTUI BtgI BtgZI BtrI BtsCI BtsI BtsIMutI BtuMI BveI Cac8I CaiI CciI CciNI CfoI Cfr10I Cfr13I Cfr42I Cfr9I ClaI CpoI CseI CsiI Csp6I CspAI CspCI CspI CviAII CviJI CviKI_1 CviQI DdeI DinI DpnI DpnII DraI DraIII DrdI DriI DseDI EaeI EagI Eam1104I Eam1105I EarI EciI Ecl136II EclXI Eco105I Eco130I Eco147I Eco24I Eco31I Eco32I Eco47I Eco47III Eco52I Eco53kI Eco57I Eco72I Eco81I Eco88I Eco91I EcoICRI EcoNI EcoO109I EcoO65I EcoRI EcoRII EcoRV EcoT14I EcoT22I EcoT38I EgeI EheI ErhI Esp3I FaeI FaiI FalI FaqI FatI FauI FauNDI FbaI FblI Fnu4HI FokI FriOI FseI Fsp4HI FspAI FspBI FspEI FspI GlaI GluI GsaI GsuI HaeII HaeIII HapII HgaI HhaI Hin1I Hin1II Hin6I HinP1I HincII HindII HindIII HinfI HpaI HpaII HphI Hpy166II Hpy188I Hpy188III Hpy8I Hpy99I HpyAV HpyCH4III HpyCH4IV HpyCH4V HpyF10VI HpyF3I HpySE526I Hsp92I Hsp92II HspAI KasI KflI Kpn2I KpnI KroI Ksp22I KspAI KspI Kzo9I LguI LmnI LpnPI Lsp1109I LweI MabI MaeI MaeII MaeIII MalI MauBI MbiI MboI MboII MfeI MflI MhlI MlsI MluCI MluI MluNI Mly113I MlyI MmeI MnlI Mox20I Mph1103I MreI MroI MroNI MroXI MscI MseI MslI Msp20I MspA1I MspCI MspI MspJI MspR9I MssI MteI MunI Mva1269I MvaI MvnI MwoI NaeI NarI NciI NcoI NdeI NdeII NgoMIV NheI NlaIII NlaIV NmeAIII NmuCI NotI NruI NsbI NsiI NspI NspV OliI PacI PaeI PaeR7I PagI PalAI PasI PauI PceI PciI PciSI PcsI PctI PdiI PdmI PfeI Pfl23II PflFI PflMI PfoI PinAI PkrI Ple19I PleI PluTI PmaCI PmeI PmlI PpsI Ppu21I PpuMI PscI PshAI PshBI PsiI Psp124BI Psp1406I Psp5II Psp6I PspCI PspEI PspFI PspGI PspLI PspN4I PspOMI PspPI PspPPI PspXI PsrI PstI PstNI PsuI PsyI PteI PvuI PvuII RgaI RigI RruI RsaI RsaNI RseI Rsr2I RsrII SacI SacII SalI SapI SaqAI SatI Sau3AI Sau96I SbfI ScaI SchI ScrFI SdaI SduI SetI SexAI SfaAI SfaNI SfcI SfiI SfoI Sfr274I Sfr303I SfuI SgeI SgfI SgrAI SgrBI SgrDI SgsI SinI SlaI SmaI SmiI SmiMI SmlI SmoI SnaBI SpeI SphI SrfI Sse8387I Sse9I SseBI SsiI SspDI SspI SspMI SstI StuI StyD4I StyI SwaI TaaI TaiI TaqI TaqII TasI TatI TauI TfiI Tru1I Tru9I TscAI TseFI TseI Tsp45I TspDTI TspGWI TspMI TspRI Tth111I Van91I Vha464I VneI VpaK11BI VspI XagI XapI XbaI XceI XcmI XhoI XmaI XmaJI XmiI XmnI XspI ZraI ZrmI Zsp2I diff --git a/tests/pAG25.gb b/tests/pAG25.gb index c934fdae..d2c3a736 100644 --- a/tests/pAG25.gb +++ b/tests/pAG25.gb @@ -1,53 +1,55 @@ -LOCUS pAG25 3704 bp ds-DNA circular 19-JUL-2012 +LOCUS pAG25 3704 bp ds-DNA circular UNK 19-JUL-2012 +DEFINITION . ACCESSION pAG25 VERSION pAG25 KEYWORDS . SOURCE Unknown ORGANISM Unknown Unclassified. . . . + . REFERENCE 1 (bases 1 to 3704) AUTHORS Self JOURNAL Unpublished. -COMMENT COMMENT ApEinfo:methylated:1 + pydna cdseguid=fr1hZnJ7fD2jq1duicYVWOmtC5Q 2024-06-11T18:53:26 FEATURES Location/Qualifiers misc_feature 73..451 /product="TEF-PRO" /gene="TEF-PRO" - /label=TEF-PRO - /ApEinfo_fwdcolor=#ffffe0 - /ApEinfo_revcolor=#61fb80 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="TEF-PRO" + /ApEinfo_fwdcolor="#ffffe0" + /ApEinfo_revcolor="#61fb80" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 452..1024 /product="Nourseothricin acetyltransferase" /gene="nat1" - /label=Nourseothricin acetyltransferase - /ApEinfo_fwdcolor=#3ec01b - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="Nourseothricin acetyltransferase" + /ApEinfo_fwdcolor="#3ec01b" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 1025..1264 /product="TEF-TER" /gene="TEF-TER" - /label=TEF-TER - /ApEinfo_fwdcolor=#ffffe0 - /ApEinfo_revcolor=#61fb80 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="TEF-TER" + /ApEinfo_fwdcolor="#ffffe0" + /ApEinfo_revcolor="#61fb80" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS complement(2370..3230) /product="AmpR" /gene="AmpR" - /label=AmpR - /ApEinfo_fwdcolor=#3ec01b - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="AmpR" + /ApEinfo_fwdcolor="#3ec01b" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 150..178 - /label=hej - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="hej" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 gccgccagct gaagcttcgt acgctgcagg tcgacggatc cccgggttaa ttaaggcgcg 61 ccagatctgt ttagcttgcc ttgtccccgc cgggtcaccc ggccagcgac atggaggccc diff --git a/tests/pAG32.gb b/tests/pAG32.gb index f5df43b0..e8867ac2 100644 --- a/tests/pAG32.gb +++ b/tests/pAG32.gb @@ -1,48 +1,49 @@ -LOCUS pAG32 4160 bp ds-DNA circular 26-NOV-2012 -DEFINITION +LOCUS pAG32 4160 bp ds-DNA circular UNK 26-NOV-2012 +DEFINITION . ACCESSION pAG32 VERSION pAG32 KEYWORDS . SOURCE Unknown ORGANISM Unknown Unclassified. . . . + . REFERENCE 1 (bases 1 to 4160) AUTHORS Self JOURNAL Unpublished. -COMMENT COMMENT ApEinfo:methylated:1 + pydna cdseguid=0RLCd_8WmkRtWyxPzLlpKNOc8tk 2024-06-11T18:53:30 FEATURES Location/Qualifiers misc_feature 91..458 /product="TEF-PRO" /gene="TEF-PRO" - /label=TEF-PRO - /ApEinfo_fwdcolor=#00ff69 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="TEF-PRO" + /ApEinfo_fwdcolor="#00ff69" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 459..1487 /product="hygromycin B phosphotransferase" /gene="hph" - /label=hygromycin B phosphotransferase - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="hygromycin B phosphotransferase" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 1488..1727 /product="TEF-TER" /gene="TEF-TER" - /label=TEF-TER - /ApEinfo_fwdcolor=#00ff69 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="TEF-TER" + /ApEinfo_fwdcolor="#00ff69" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS complement(2833..3693) /product="AmpR" /gene="AmpR" - /label=AmpR - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="AmpR" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 gaacgcggcc gccagctgaa gcttcgtacg ctgcaggtcg acggatcccc gggttaatta 61 aggcgcgcca gatctgttta gcttgccttg tccccgccgg gtcacccggc cagcgacatg diff --git a/tests/pCAPs-AjiI.gb b/tests/pCAPs-AjiI.gb index 1e197aa9..9d04a022 100644 --- a/tests/pCAPs-AjiI.gb +++ b/tests/pCAPs-AjiI.gb @@ -1,5 +1,5 @@ LOCUS AJ001614_1 3128 bp DNA circular UNK 10-JUL-2012 -DEFINITION Escherichia coli plasmid pCAPs with AjiI +DEFINITION Escherichia coli plasmid pCAPs with AjiI. ACCESSION AJ001614 VERSION AJ001614.1 GI:2769261 KEYWORDS ampicillin resistance; beta-lactamase; bla gene; catabolite gene @@ -20,17 +20,17 @@ REFERENCE 2 (bases 1 to 3128) TITLE Direct Submission JOURNAL Submitted (15-SEP-1997) Schlieper D., Institute of Genetics, University of Cologne, Weyertal 121, Cologne, 50931, GERMANY -COMMENT - ApEinfo:methylated:1 +COMMENT ApEinfo:methylated:1 + pydna cdseguid=IFLMpKpCGZio0R0YkGSfqPaKKiw 2024-06-11T18:40:55 FEATURES Location/Qualifiers gene complement(315..947) /gene="crp" /label="crp" CDS complement(315..947) /product="catabolite gene activator protein" - /codon_start="1" + /codon_start=1 /label="catabolite gene activator protein" - /transl_table="11" + /transl_table=11 /note="artificially mutated crp; cyclic AMP receptor protein" /db_xref="GI:2769262" @@ -43,16 +43,16 @@ FEATURES Location/Qualifiers /gene="crp" /protein_id="CAA04867.1" rep_origin 1313 - /direction="BOTH" + /direction=BOTH /label="rep_origin" gene complement(2072..2932) /gene="bla" /label="bla" CDS complement(2072..2932) /product="beta-lactamase" - /codon_start="1" + /codon_start=1 /label="beta-lactamase" - /transl_table="11" + /transl_table=11 /db_xref="GI:2769263" /db_xref="GOA:Q79DR3" /db_xref="HSSP:P62593" diff --git a/tests/pCAPs-pSU0.gb b/tests/pCAPs-pSU0.gb index 9498ef3a..05889fa9 100644 --- a/tests/pCAPs-pSU0.gb +++ b/tests/pCAPs-pSU0.gb @@ -1,4 +1,4 @@ -LOCUS AJ001614_1 5762 bp ds-DNA circular 11-JUL-2012 +LOCUS AJ001614_1 5762 bp ds-DNA circular UNK 11-JUL-2012 DEFINITION Escherichia coli plasmid pCAPs. ACCESSION AJ001614 VERSION AJ001614.1 GI:2769261 @@ -20,62 +20,57 @@ REFERENCE 2 (bases 1 to 3128) TITLE Direct Submission JOURNAL Submitted (15-SEP-1997) Schlieper D., Institute of Genetics, University of Cologne, Weyertal 121, Cologne, 50931, GERMANY -COMMENT COMMENT ApEinfo:methylated:1 + pydna cdseguid=oWyz8EF-LXEuzTc1nodipu_zdK4 2024-06-11T18:43:02 FEATURES Location/Qualifiers gene complement(315..947) /gene="crp" - /label=crp + /label="crp" CDS complement(315..947) /product="catabolite gene activator protein" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /note="artificially mutated crp; cyclic AMP receptor protein" /db_xref="GI:2769262" /experiment="experimental evidence, no additional details recorded" - /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV - K - GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKF - R - QLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVSGRIAQTLLNLAKQPDAMTHPD - G MQIKITRQEIGQIVGCSRQTVGRILKMLEDQNLISAHGKTIVVYGTR" + /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVK + GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFR + QLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVSGRIAQTLLNLAKQPDAMTHPDG + MQIKITRQEIGQIVGCSRQTVGRILKMLEDQNLISAHGKTIVVYGTR" /gene="crp" /protein_id="CAA04867.1" - /label=catabolite gene activator protein + /label="catabolite gene activator protein" gene complement(4706..5566) /gene="Amp" - /label=Amp + /label="Amp" gene complement(2057..2860) /gene="ura3" - /label=ura3 + /label="ura3" CDS complement(2057..2860) /product="orotidine-5'-phosphate decarboxylase" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /db_xref="GI:84570490" - /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKEL - L - ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKL - Q - YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTG - E - YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVD - D VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN" + /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL + ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ + YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGE + YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDD + VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN" /gene="ura3" /protein_id="BAE72675.1" - /label=orotidine-5'-phosphate decarboxylase + /label="orotidine-5'-phosphate decarboxylase" rep_origin complement(1295..1977) - /label=ColE1 origin + /label="ColE1 origin" gene complement(join(1979..2649,2698..3086)) - /label=URA3 + /label="URA3" misc_feature complement(3109..4560) - /label=2micron - misc_feature complement(2669..2669) - /label=c>t to remove EcoRV - misc_feature 1278..1278 - /label=G or C pCAPs/pSU0 + /label="2micron" + misc_feature complement(2669) + /label="c>t to remove EcoRV" + misc_feature 1278 + /label="G or C pCAPs/pSU0" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg diff --git a/tests/pCAPs.gb b/tests/pCAPs.gb index 47830783..7968e143 100644 --- a/tests/pCAPs.gb +++ b/tests/pCAPs.gb @@ -21,6 +21,7 @@ REFERENCE 2 (bases 1 to 3128) TITLE Direct Submission JOURNAL Submitted (15-SEP-1997) Schlieper D., Institute of Genetics, University of Cologne, Weyertal 121, Cologne, 50931, GERMANY +COMMENT pydna cdseguid=zhHqWumz6QRMyNmtS749GvEbvJk 2024-06-11T18:53:30 FEATURES Location/Qualifiers gene complement(315..947) /gene="crp" @@ -35,10 +36,10 @@ FEATURES Location/Qualifiers /product="catabolite gene activator protein" /protein_id="CAA04867.1" /db_xref="GI:2769262" - /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV - KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK - FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVSGRIAQTLLNLAKQPDAMTH - PDGMQIKITRQEIGQIVGCSRQTVGRILKMLEDQNLISAHGKTIVVYGTR" + /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVK + GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFR + QLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVSGRIAQTLLNLAKQPDAMTHPDG + MQIKITRQEIGQIVGCSRQTVGRILKMLEDQNLISAHGKTIVVYGTR" rep_origin 1313 /direction=BOTH gene complement(2072..2932) @@ -56,12 +57,12 @@ FEATURES Location/Qualifiers /db_xref="InterPro:IPR001466" /db_xref="InterPro:IPR012338" /db_xref="UniProtKB/TrEMBL:Q79DR3" - /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY - IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE - YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL - DRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL - LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA - EIGASLIKHW" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -71,9 +72,9 @@ ORIGIN 301 ccactccgac gggattaacg agtgccgtaa acgacgatgg ttttaccgtg tgcggagatc 361 aggttctgat cctcgagcat cttaagaatt cgtcccacgg tttgtctaga gcagccgaca 421 atctggccaa tttcctgacg ggtaattttg atttgcatgc cgtccgggtg agtcatagcg - 481 tctggttgtt ttgccagatt cagcagagtc tgtgcaatgc ggccgctGAC GTCgaggaac + 481 tctggttgtt ttgccagatt cagcagagtc tgtgcaatgc ggccgctgac gtcgaggaac 541 gccaggttgc ccactttctc actagtgacc tgcagccggc gcgccatctg tgcagacaaa - 601 cgcatcagGA TATCcggatt tacctgaatc aattggcgaa attttttgta cgaaatttca + 601 cgcatcagga tatccggatt tacctgaatc aattggcgaa attttttgta cgaaatttca 661 gccacttcac aggcggtttt cgcacgtacc catgcgctac gttcctggcc ctcttcaaac 721 aggcccagtt cgccaataaa atcaccctga ttcagatagg agaggatcat ttctttaccc 781 tcttcgtctt tgatcagcac tgccacagag cctttaacga tgtagtacag cgtttccgct diff --git a/tests/pCAPs_lowgc.gb b/tests/pCAPs_lowgc.gb index 7ac9f20f..25f7d5ca 100644 --- a/tests/pCAPs_lowgc.gb +++ b/tests/pCAPs_lowgc.gb @@ -1,31 +1,32 @@ -LOCUS 3128bp__1 3128 bp ds-DNA circular 25-JUL-2012 -DEFINITION Primers lowgc_f lowgc_r +LOCUS 3128bp__1 3128 bp ds-DNA circular UNK 25-JUL-2012 +DEFINITION Primers lowgc_f lowgc_r. ACCESSION 3128bp 7pPxy/bQvs4+7CaOgiywQVzUFDc VERSION 3128bp 7pPxy/bQvs4+7CaOgiywQVzUFDc KEYWORDS . -SOURCE . +SOURCE ORGANISM . . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=QgX5Kemmodj2J2eL57KdF-vtyFQ 2024-06-11T18:40:55 FEATURES Location/Qualifiers - rep_origin 757..757 - /direction="BOTH" - /label=rep_origin - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + rep_origin 757 + /direction=BOTH + /label="rep_origin" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" gene complement(1516..2376) /gene="bla" - /label=bla - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="bla" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS complement(1516..2376) /product="beta-lactamase" - /codon_start="1" - /transl_table="11" + /codon_start=1 + /transl_table=11 /db_xref="GI:2769263" /db_xref="GOA:Q79DR3" /db_xref="HSSP:P62593" @@ -33,35 +34,31 @@ FEATURES Location/Qualifiers /db_xref="InterPro:IPR001466" /db_xref="InterPro:IPR012338" /db_xref="UniProtKB/TrEMBL:Q79DR3" - /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY - I - ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY - S - PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR - W - EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS - A - LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA - S LIKHW" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" /gene="bla" /protein_id="CAA04868.1" - /label=beta-lactamase - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="beta-lactamase" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind 1..57 - /label=lowgc_f - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="lowgc_f" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3083..3128) - /label=lowgc_r - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="lowgc_r" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 tttcactagt tacttgtagt cgacgtgcca tctgtgcaga caaacgcatc aggatatccg 61 gatttacctg aatcaattgg cgaaattttt tgtacgaaat ttcagccact tcacaggcgg diff --git a/tests/pCR_MCT1_HA46.gb b/tests/pCR_MCT1_HA46.gb index f34ebd15..5c4bd934 100644 --- a/tests/pCR_MCT1_HA46.gb +++ b/tests/pCR_MCT1_HA46.gb @@ -1,11 +1,12 @@ LOCUS 5060bp_PCR_prod 5052 bp DNA circular UNK 05-DEC-2014 -DEFINITION Product__ +DEFINITION Product__. ACCESSION 5060bp mkmplch2TIMEFQ5OLSf8Vy8dyJw VERSION 5060bp mkmplch2TIMEFQ5OLSf8Vy8dyJw KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=KjMnBl3im4i8Z2wZiClqiiV7ovw 2024-06-11T18:40:13 FEATURES Location/Qualifiers source join(5057..5060,1..332) /mol_type="other DNA" diff --git a/tests/pGREG505.gb b/tests/pGREG505.gb index 0fbe8df9..51a6647f 100644 --- a/tests/pGREG505.gb +++ b/tests/pGREG505.gb @@ -1,110 +1,111 @@ -LOCUS pGREG505 9465 bp ds-DNA circular 15-DEC-2012 -DEFINITION pGREG505 circular +LOCUS pGREG505 9465 bp ds-DNA circular UNK 15-DEC-2012 +DEFINITION pGREG505 circular. ACCESSION pGREG505 VERSION pGREG505 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=cr9QvaW0QQWgiRNmG3W-ebeCQK0 2024-06-11T18:53:34 FEATURES Location/Qualifiers primer_bind 9444..9463 - /label=T3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3597..3614) - /label=M13-fwd - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-fwd" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind 9406..9426 - /label=M13-rev - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13-rev" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" primer_bind complement(3568..3588) - /label=T7 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="T7" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 8356..9038 - /label=ColE1 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="ColE1 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3775..4081 - /label=F1 ori - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="F1 ori" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" rep_origin 3758..4213 - /label=M13 origin - /ApEinfo_fwdcolor=gray50 - /ApEinfo_revcolor=gray50 - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="M13 origin" + /ApEinfo_fwdcolor="gray50" + /ApEinfo_revcolor="gray50" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 3685..3753 - /label=LacZ alpha - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacZ alpha" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_binding 9378..9400 - /label=LacO - /ApEinfo_fwdcolor=#6495ed - /ApEinfo_revcolor=#6495ed - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LacO" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 1997..2030 - /label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_recomb 3499..3532 - /label=LoxP(1) - /ApEinfo_label=LoxP - /ApEinfo_fwdcolor=steel blue - /ApEinfo_revcolor=orange - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LoxP(1)" + /ApEinfo_label="LoxP" + /ApEinfo_fwdcolor="steel blue" + /ApEinfo_revcolor="orange" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 7599..8261 - /label=AmpR - /ApEinfo_fwdcolor=yellow - /ApEinfo_revcolor=yellow - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="AmpR" + /ApEinfo_fwdcolor="yellow" + /ApEinfo_revcolor="yellow" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 40..483 - /label=GAL1p - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="GAL1p" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 530..562 - /label=rec1 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec1" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 1725..1759 - /label=rec2 - /ApEinfo_fwdcolor=#ff0000 - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="rec2" + /ApEinfo_fwdcolor="#ff0000" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" misc_feature 565..1724 - /label=HIS3 - /ApEinfo_fwdcolor=cyan - /ApEinfo_revcolor=green - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="HIS3" + /ApEinfo_fwdcolor="cyan" + /ApEinfo_revcolor="green" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 aaaagctgga gctcgtttaa acggcgcgcc tagtacggat tagaagccgc cgagcgggtg 61 acagccctcc gaaggaagac tctcctccgt gcgtcctcgt cttcaccggt cgcgttcctg diff --git a/tests/pGSHU 7180bp.gb b/tests/pGSHU 7180bp.gb index b80755db..db56f414 100644 --- a/tests/pGSHU 7180bp.gb +++ b/tests/pGSHU 7180bp.gb @@ -1,13 +1,17 @@ -LOCUS pGSHU_7180bp_cir 7180 bp ds-DNA circular 20-DEC-2012 +LOCUS pGSHU_7180bp_cir 7180 bp ds-DNA circular UNK 20-DEC-2012 DEFINITION . -ACCESSION -VERSION -SOURCE . +ACCESSION pGSHU_7180bp_cir +VERSION pGSHU_7180bp_cir +KEYWORDS . +SOURCE ORGANISM . + . COMMENT >pGSHU 7180bp circular -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=2Ur7X6FTm8I7lQzF_qcu4fb89Bo 2024-06-11T18:53:23 +FEATURES Location/Qualifiers ORIGIN - 1 GAACGCGGCC GCCAGCTGAA GCTTCGTACG CTGCAGGTCG ACGGATCCCC ctggcacgac + 1 gaacgcggcc gccagctgaa gcttcgtacg ctgcaggtcg acggatcccc ctggcacgac 61 aggtttcccg actggaaagc gggcagtgag cgcaacgcaa ttaatgtgag ttacctcact 121 cattaggcac cccaggcttt acactttatg cttccggctc ctatgttgtg tggaattgtg 181 agcggataac aatttcacac aggaaacagc tatgaccatg attacgccaa gctcggaatt @@ -36,47 +40,47 @@ ORIGIN 1561 tttgcttctc tctctctctt tcattatgtg agagtttaaa aaccagaaac tacatcatcg 1621 aaaaagagtt taaaccatta caaccattgc gataagccct ctcaaacttc ctccagactg 1681 tttgtcatcc aattggtaag attaattatc atataccccg gataagaaaa gaagcaagca - 1741 cacaatggat caacttaatg gtaaggaaca acaagagcca ccgcggtgga gctcGTTTTC - 1801 GACACTGGAT GGCGGCGTTA GTATCGAATC GACAGCAGTA TAGCGACCAG CATTCACATA - 1861 CGATTGACGC ATGATATTAC TTTCTGCGCA CTTAACTTCG CATCTGGGCA GATGATGTCG - 1921 AGGCGAAAAA AAATATAAAT CACGCTAACA TTTGATTAAA ATAGAACAAC TACAATATAA - 1981 AAAAACTATA CAAATGACAA GTTCTTGAAA ACAAGAATCT TTTTATTGTC AGTACTGATT - 2041 ATTCCTTTGC CCTCGGACGA GTGCTGGGGC GTCGGTTTCC ACTATCGGCG AGTACTTCTA - 2101 CACAGCCATC GGTCCAGACG GCCGCGCTTC TGCGGGCGAT TTGTGTACGC CCGACAGTCC - 2161 CGGCTCCGGA TCGGACGATT GCGTCGCATC GACCCTGCGC CCAAGCTGCA TCATCGAAAT - 2221 TGCCGTCAAC CAAGCTCTGA TAGAGTTGGT CAAGACCAAT GCGGAGCATA TACGCCCGGA - 2281 GCCGCGGCGA TCCTGCAAGC TCCGGATGCC TCCGCTCGAA GTAGCGCGTC TGCTGCTCCA - 2341 TACAAGCCAA CCACGGCCTC CAGAAGAAGA TGTTGGCGAC CTCGTATTGG GAATCCCCGA - 2401 ACATCGCCTC GCTCCAGTCA ATGACCGCTG TTATGCGGCC ATTGTCCGTC AGGACATTGT - 2461 TGGAGCCGAA ATCCGCGTGC ACGAGGTGCC GGACTTCGGG GCAGTCCTCG GCCCAAAGCA - 2521 TCAGCTCATC GAGAGCCTGC GCGACGGACG CACTGACGGT GTCGTCCATC ACAGTTTGCC - 2581 AGTGATACAC ATGGGGATCA GCAATCGCGC ATATGAAATC ACGCCATGTA GTGTATTGAC - 2641 CGATTCCTTG CGGTCCGAAT GGGCCGAACC CGCTCGTCTG GCTAAGATCG GCCGCAGCGA - 2701 TCGCATCCAT GGCCTCCGCG ACCGGCTGCA GAACAGCGGG CAGTTCGGTT TCAGGCAGGT - 2761 CTTGCAACGT GACACCCTGT GCACGGCGGG AGATGCAATA GGTCAGGCTC TCGCTGAATT - 2821 CCCCAATGTC AAGCACTTCC GGAATCGGGA GCGCGGCCGA TGCAAAGTGC CGATAAACAT - 2881 AACGATCTTT GTAGAAACCA TCGGCGCAGC TATTTACCCG CAGGACATAT CCACGCCCTC - 2941 CTACATCGAA GCTGAAAGCA CGAGATTCTT CGCCCTCCGA GAGCTGCATC AGGTCGGAGA - 3001 CGCTGTCGAA CTTTTCGATC AGAAACTTCT CGACAGACGT CGCGGTGAGT TCAGGCTTTT - 3061 TACCCATGGT TGTTTATGTT CGGATGTGAT GTGAGAACTG TATCCTAGCA AGATTTTAAA - 3121 AGGAAGTATA TGAAAGAAGA ACCTCAGTGG CAAATCCTAA CCTTTTATAT TTCTCTACAG - 3181 GGGCGCGGCG TGGGGACAAT TCAACGCGTC TGTGAGGGGA GCGTTTCCCT GCTCGCAGGT - 3241 CTGCAGCGAG GAGCCGTAAT TTTTGCTTCG CGCCGTGCGG CCATCAAAAT GTATGGATGC - 3301 AAATGATTAT ACATGGGGAT GTATGGGCTA AATGTACGGG CGACAGTCAC ATCATGCCCC - 3361 TGAGCTGCGC ACGTCAAGAC TGTCAAGGAG GGTATTCTGG GCCTCCATGT CGCTGGCCGG - 3421 GTGACCCGGC GGGGACGAGG CAAGCTAAAC AGATCTGACT TATTATTTCA GGAAAGTTTC - 3481 GGAGGAGATA GTGTTCGGCA GTTTGTACAT CATCTGCGGG ATCAGGTACG GTTTGATCAG - 3541 GTTGTAGAAG ATCAGGTAAG ACATAGAATC GATGTAGATG ATCGGTTTGT TTTTGTTGAT - 3601 TTTTACGTAA CAGTTCAGTT GGAATTTGTT ACGCAGACCC TTAACCAGGT ATTCTACTTC - 3661 TTCGAAAGTG AAAGACTGGG TGTTCAGTAC GATCGATTTG TTGGTAGAGT TTTTGTTGTA - 3721 ATCCCATTTA CCACCATCAT CCATGAACCA GTATGCCAGA GACATCGGGG TCAGGTAGTT - 3781 TTCAACCAGG TTGTTCGGGA TGGTTTTTTT GTTGTTAACG ATGAACAGGT TAGCCAGTTT - 3841 GTTGAAAGCT TGGTGTTTGA AAGTCTGGGC GCCCCAGGTG ATTACCAGGT TACCCAGGTG - 3901 GTTAACACGT TCTTTTTTGT GCGGCGGGGA CAGTACCCAC TGATCGTACA GCAGACATAC - 3961 GTGGTCCATG TATGCTTTGT TTTTCCACTC GAACTGCATA CAGTAGGTTT TACCTTCATC - 4021 ACGAGAACGG ATGTAAGCAT CACCCAGGAT CAGACCGATA CCTGCTTCGA ACTGTTCGAT - 4081 GTTCAGTTCG ATCAGCTGGG ATTTGTATTC TTTCAGCAGT TTAGAGTTCG GACCCAGGTT - 4141 CATTACCTGG TTTTTTTTGA TGTTTTTCAT ATGCATGGAT CCGGGGtttt ttctccttga + 1741 cacaatggat caacttaatg gtaaggaaca acaagagcca ccgcggtgga gctcgttttc + 1801 gacactggat ggcggcgtta gtatcgaatc gacagcagta tagcgaccag cattcacata + 1861 cgattgacgc atgatattac tttctgcgca cttaacttcg catctgggca gatgatgtcg + 1921 aggcgaaaaa aaatataaat cacgctaaca tttgattaaa atagaacaac tacaatataa + 1981 aaaaactata caaatgacaa gttcttgaaa acaagaatct ttttattgtc agtactgatt + 2041 attcctttgc cctcggacga gtgctggggc gtcggtttcc actatcggcg agtacttcta + 2101 cacagccatc ggtccagacg gccgcgcttc tgcgggcgat ttgtgtacgc ccgacagtcc + 2161 cggctccgga tcggacgatt gcgtcgcatc gaccctgcgc ccaagctgca tcatcgaaat + 2221 tgccgtcaac caagctctga tagagttggt caagaccaat gcggagcata tacgcccgga + 2281 gccgcggcga tcctgcaagc tccggatgcc tccgctcgaa gtagcgcgtc tgctgctcca + 2341 tacaagccaa ccacggcctc cagaagaaga tgttggcgac ctcgtattgg gaatccccga + 2401 acatcgcctc gctccagtca atgaccgctg ttatgcggcc attgtccgtc aggacattgt + 2461 tggagccgaa atccgcgtgc acgaggtgcc ggacttcggg gcagtcctcg gcccaaagca + 2521 tcagctcatc gagagcctgc gcgacggacg cactgacggt gtcgtccatc acagtttgcc + 2581 agtgatacac atggggatca gcaatcgcgc atatgaaatc acgccatgta gtgtattgac + 2641 cgattccttg cggtccgaat gggccgaacc cgctcgtctg gctaagatcg gccgcagcga + 2701 tcgcatccat ggcctccgcg accggctgca gaacagcggg cagttcggtt tcaggcaggt + 2761 cttgcaacgt gacaccctgt gcacggcggg agatgcaata ggtcaggctc tcgctgaatt + 2821 ccccaatgtc aagcacttcc ggaatcggga gcgcggccga tgcaaagtgc cgataaacat + 2881 aacgatcttt gtagaaacca tcggcgcagc tatttacccg caggacatat ccacgccctc + 2941 ctacatcgaa gctgaaagca cgagattctt cgccctccga gagctgcatc aggtcggaga + 3001 cgctgtcgaa cttttcgatc agaaacttct cgacagacgt cgcggtgagt tcaggctttt + 3061 tacccatggt tgtttatgtt cggatgtgat gtgagaactg tatcctagca agattttaaa + 3121 aggaagtata tgaaagaaga acctcagtgg caaatcctaa ccttttatat ttctctacag + 3181 gggcgcggcg tggggacaat tcaacgcgtc tgtgagggga gcgtttccct gctcgcaggt + 3241 ctgcagcgag gagccgtaat ttttgcttcg cgccgtgcgg ccatcaaaat gtatggatgc + 3301 aaatgattat acatggggat gtatgggcta aatgtacggg cgacagtcac atcatgcccc + 3361 tgagctgcgc acgtcaagac tgtcaaggag ggtattctgg gcctccatgt cgctggccgg + 3421 gtgacccggc ggggacgagg caagctaaac agatctgact tattatttca ggaaagtttc + 3481 ggaggagata gtgttcggca gtttgtacat catctgcggg atcaggtacg gtttgatcag + 3541 gttgtagaag atcaggtaag acatagaatc gatgtagatg atcggtttgt ttttgttgat + 3601 ttttacgtaa cagttcagtt ggaatttgtt acgcagaccc ttaaccaggt attctacttc + 3661 ttcgaaagtg aaagactggg tgttcagtac gatcgatttg ttggtagagt ttttgttgta + 3721 atcccattta ccaccatcat ccatgaacca gtatgccaga gacatcgggg tcaggtagtt + 3781 ttcaaccagg ttgttcggga tggttttttt gttgttaacg atgaacaggt tagccagttt + 3841 gttgaaagct tggtgtttga aagtctgggc gccccaggtg attaccaggt tacccaggtg + 3901 gttaacacgt tcttttttgt gcggcgggga cagtacccac tgatcgtaca gcagacatac + 3961 gtggtccatg tatgctttgt ttttccactc gaactgcata cagtaggttt taccttcatc + 4021 acgagaacgg atgtaagcat cacccaggat cagaccgata cctgcttcga actgttcgat + 4081 gttcagttcg atcagctggg atttgtattc tttcagcagt ttagagttcg gacccaggtt + 4141 cattacctgg ttttttttga tgtttttcat atgcatggat ccggggtttt ttctccttga 4201 cgttaaagta tagaggtata ttaacaattt tttgttgata cttttattac atttgaataa 4261 gaagtaatac aaaccgaaaa tgttgaaagt attagttaaa gtggttatgc agtttttgca 4321 tttatatatc tgttaataga tcaaaaatca tcgcttcgct gattaattac cccagaaata @@ -87,44 +91,44 @@ ORIGIN 4621 cggcttctaa tccgtacttc aatatagcaa tgagcagtta agcgtattac tgaaagttcc 4681 aaagagaagg tttttttagg ctaagataat ggggctcttt acatttccac aacatataag 4741 taagattaga tatggatatg tatatggata tgtatatggt ggtaatgcca tgtaatatga - 4801 ttattaaact tctttgcgtc catccaaCGA GATCTGGCGC GCCTTAATTA ACCCAACCTG - 4861 CATTAATGAA TCGGCCAACG CGCGGGGAGA GGCGGTTTGC GTATTGGGCG CTCTTCCGCT - 4921 TCCTCGCTCA CTGACTCGCT GCGCTCGGTC GTTCGGCTGC GGCGAGCGGT ATCAGCTCAC - 4981 TCAAAGGCGG TAATACGGTT ATCCACAGAA TCAGGGGATA ACGCAGGAAA GAACATGTGA - 5041 GCAAAAGGCC AGCAAAAGGC CAGGAACCGT AAAAAGGCCG CGTTGCTGGC GTTTTTCCAT - 5101 AGGCTCCGCC CCCCTGACGA GCATCACAAA AATCGACGCT CAAGTCAGAG GTGGCGAAAC - 5161 CCGACAGGAC TATAAAGATA CCAGGCGTTT CCCCCTGGAA GCTCCCTCGT GCGCTCTCCT - 5221 GTTCCGACCC TGCCGCTTAC CGGATACCTG TCCGCCTTTC TCCCTTCGGG AAGCGTGGCG - 5281 CTTTCTCAAT GCTCACGCTG TAGGTATCTC AGTTCGGTGT AGGTCGTTCG CTCCAAGCTG - 5341 GGCTGTGTGC ACGAACCCCC CGTTCAGCCC GACCGCTGCG CCTTATCCGG TAACTATCGT - 5401 CTTGAGTCCA ACCCGGTAAG ACACGACTTA TCGCCACTGG CAGCAGCCAC TGGTAACAGG - 5461 ATTAGCAGAG CGAGGTATGT AGGCGGTGCT ACAGAGTTCT TGAAGTGGTG GCCTAACTAC - 5521 GGCTACACTA GAAGGACAGT ATTTGGTATC TGCGCTCTGC TGAAGCCAGT TACCTTCGGA - 5581 AAAAGAGTTG GTAGCTCTTG ATCCGGCAAA CAAACCACCG CTGGTAGCGG TGGTTTTTTT - 5641 GTTTGCAAGC AGCAGATTAC GCGCAGAAAA AAAGGATCTC AAGAAGATCC TTTGATCTTT - 5701 TCTACGGGGT CTGACGCTCA GTGGAACGAA AACTCACGTT AAGGGATTTT GGTCATGAGA - 5761 TTATCAAAAA GGATCTTCAC CTAGATCCTT TTAAATTAAA AATGAAGTTT TAAATCAATC - 5821 TAAAGTATAT ATGAGTAAAC TTGGTCTGAC AGTTACCAAT GCTTAATCAG TGAGGCACCT - 5881 ATCTCAGCGA TCTGTCTATT TCGTTCATCC ATAGTTGCCT GACTCCCCGT CGTGTAGATA - 5941 ACTACGATAC GGGAGGGCTT ACCATCTGGC CCCAGTGCTG CAATGATACC GCGAGACCCA - 6001 CGCTCACCGG CTCCAGATTT ATCAGCAATA AACCAGCCAG CCGGAAGGGC CGAGCGCAGA - 6061 AGTGGTCCTG CAACTTTATC CGCCTCCATC CAGTCTATTA ATTGTTGCCG GGAAGCTAGA - 6121 GTAAGTAGTT CGCCAGTTAA TAGTTTGCGC AACGTTGTTG CCATTGCTAC AGGCATCGTG - 6181 GTGTCACGCT CGTCGTTTGG TATGGCTTCA TTCAGCTCCG GTTCCCAACG ATCAAGGCGA - 6241 GTTACATGAT CCCCCATGTT GTGCAAAAAA GCGGTTAGCT CCTTCGGTCC TCCGATCGTT - 6301 GTCAGAAGTA AGTTGGCCGC AGTGTTATCA CTCATGGTTA TGGCAGCACT GCATAATTCT - 6361 CTTACTGTCA TGCCATCCGT AAGATGCTTT TCTGTGACTG GTGAGTACTC AACCAAGTCA - 6421 TTCTGAGAAT AGTGTATGCG GCGACCGAGT TGCTCTTGCC CGGCGTCAAT ACGGGATAAT - 6481 ACCGCGCCAC ATAGCAGAAC TTTAAAAGTG CTCATCATTG GAAAACGTTC TTCGGGGCGA - 6541 AAACTCTCAA GGATCTTACC GCTGTTGAGA TCCAGTTCGA TGTAACCCAC TCGTGCACCC - 6601 AACTGATCTT CAGCATCTTT TACTTTCACC AGCGTTTCTG GGTGAGCAAA AACAGGAAGG - 6661 CAAAATGCCG CAAAAAAGGG AATAAGGGCG ACACGGAAAT GTTGAATACT CATACTCTTC - 6721 CTTTTTCAAT ATTATTGAAG CATTTATCAG GGTTATTGTC TCATGAGCGG ATACATATTT - 6781 GAATGTATTT AGAAAAATAA ACAAATAGGG GTTCCGCGCA CATTTCCCCG AAAAGTGCCA - 6841 CCTGACGTCT AAGAAACCAT TATTATCATG ACATTAACCT ATAAAAATAG GCGTATCACG - 6901 AGGCCCTTTC GTCTCGCGCG TTTCGGTGAT GACGGTGAAA ACCTCTGACA CATGCAGCTC - 6961 CCGGAGACGG TCACAGCTTG TCTGTAAGCG GATGCCGGGA GCAGACAAGC CCGTCAGGGC - 7021 GCGTCAGCGG GTGTTGGCGG GTGTCGGGGC TGGCTTAACT ATGCGGCATC AGAGCAGATT - 7081 GTACTGAGAG TGCACCATAT GGACATATTG TCGTTAGAAC GCGGCTACAA TTAATACATA - 7141 ACCTTATGTA TCATACACAT ACGATTTAGG TGACACTATA + 4801 ttattaaact tctttgcgtc catccaacga gatctggcgc gccttaatta acccaacctg + 4861 cattaatgaa tcggccaacg cgcggggaga ggcggtttgc gtattgggcg ctcttccgct + 4921 tcctcgctca ctgactcgct gcgctcggtc gttcggctgc ggcgagcggt atcagctcac + 4981 tcaaaggcgg taatacggtt atccacagaa tcaggggata acgcaggaaa gaacatgtga + 5041 gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg cgttgctggc gtttttccat + 5101 aggctccgcc cccctgacga gcatcacaaa aatcgacgct caagtcagag gtggcgaaac + 5161 ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt gcgctctcct + 5221 gttccgaccc tgccgcttac cggatacctg tccgcctttc tcccttcggg aagcgtggcg + 5281 ctttctcaat gctcacgctg taggtatctc agttcggtgt aggtcgttcg ctccaagctg + 5341 ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg ccttatccgg taactatcgt + 5401 cttgagtcca acccggtaag acacgactta tcgccactgg cagcagccac tggtaacagg + 5461 attagcagag cgaggtatgt aggcggtgct acagagttct tgaagtggtg gcctaactac + 5521 ggctacacta gaaggacagt atttggtatc tgcgctctgc tgaagccagt taccttcgga + 5581 aaaagagttg gtagctcttg atccggcaaa caaaccaccg ctggtagcgg tggttttttt + 5641 gtttgcaagc agcagattac gcgcagaaaa aaaggatctc aagaagatcc tttgatcttt + 5701 tctacggggt ctgacgctca gtggaacgaa aactcacgtt aagggatttt ggtcatgaga + 5761 ttatcaaaaa ggatcttcac ctagatcctt ttaaattaaa aatgaagttt taaatcaatc + 5821 taaagtatat atgagtaaac ttggtctgac agttaccaat gcttaatcag tgaggcacct + 5881 atctcagcga tctgtctatt tcgttcatcc atagttgcct gactccccgt cgtgtagata + 5941 actacgatac gggagggctt accatctggc cccagtgctg caatgatacc gcgagaccca + 6001 cgctcaccgg ctccagattt atcagcaata aaccagccag ccggaagggc cgagcgcaga + 6061 agtggtcctg caactttatc cgcctccatc cagtctatta attgttgccg ggaagctaga + 6121 gtaagtagtt cgccagttaa tagtttgcgc aacgttgttg ccattgctac aggcatcgtg + 6181 gtgtcacgct cgtcgtttgg tatggcttca ttcagctccg gttcccaacg atcaaggcga + 6241 gttacatgat cccccatgtt gtgcaaaaaa gcggttagct ccttcggtcc tccgatcgtt + 6301 gtcagaagta agttggccgc agtgttatca ctcatggtta tggcagcact gcataattct + 6361 cttactgtca tgccatccgt aagatgcttt tctgtgactg gtgagtactc aaccaagtca + 6421 ttctgagaat agtgtatgcg gcgaccgagt tgctcttgcc cggcgtcaat acgggataat + 6481 accgcgccac atagcagaac tttaaaagtg ctcatcattg gaaaacgttc ttcggggcga + 6541 aaactctcaa ggatcttacc gctgttgaga tccagttcga tgtaacccac tcgtgcaccc + 6601 aactgatctt cagcatcttt tactttcacc agcgtttctg ggtgagcaaa aacaggaagg + 6661 caaaatgccg caaaaaaggg aataagggcg acacggaaat gttgaatact catactcttc + 6721 ctttttcaat attattgaag catttatcag ggttattgtc tcatgagcgg atacatattt + 6781 gaatgtattt agaaaaataa acaaataggg gttccgcgca catttccccg aaaagtgcca + 6841 cctgacgtct aagaaaccat tattatcatg acattaacct ataaaaatag gcgtatcacg + 6901 aggccctttc gtctcgcgcg tttcggtgat gacggtgaaa acctctgaca catgcagctc + 6961 ccggagacgg tcacagcttg tctgtaagcg gatgccggga gcagacaagc ccgtcagggc + 7021 gcgtcagcgg gtgttggcgg gtgtcggggc tggcttaact atgcggcatc agagcagatt + 7081 gtactgagag tgcaccatat ggacatattg tcgttagaac gcggctacaa ttaatacata + 7141 accttatgta tcatacacat acgatttagg tgacactata // diff --git a/tests/pGSKU 6961bp.gb b/tests/pGSKU 6961bp.gb index e9ad06d2..dc2beede 100644 --- a/tests/pGSKU 6961bp.gb +++ b/tests/pGSKU 6961bp.gb @@ -1,128 +1,130 @@ -LOCUS pGSKU_6961bp 6961 bp ds-DNA circular 20-DEC-2012 +LOCUS pGSKU_6961bp 6961 bp ds-DNA circular UNK 20-DEC-2012 DEFINITION . -ACCESSION -VERSION -SOURCE . +ACCESSION pGSKU_6961bp +VERSION pGSKU_6961bp +KEYWORDS . +SOURCE ORGANISM . -COMMENT -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=l3jinDP_6vluvcX9XfsqdBbmEC8 2024-06-11T18:53:17 +FEATURES Location/Qualifiers ORIGIN - 1 GAACGCGGCC GCCAGCTGAA GCTTCGTACG CTGCAGGTCG ACGGATCCCC CTGGCACGAC - 61 AGGTTTCCCG ACTGGAAAGC GGGCAGTGAG CGCAACGCAA TTAATGTGAG TTACCTCACT - 121 CATTAGGCAC CCCAGGCTTT ACACTTTATG CTTCCGGCTC CTATGTTGTG TGGAATTGTG - 181 AGCGGATAAC AATTTCACAC AGGAAACAGC TATGACCATG ATTACGCCAA GCTCGGAATT - 241 AACCCTCACT AAAGGGAACA AAAGCTGGGT ACCGCGGAGA CAATCATATG GGAGAAGCAA - 301 TTGGAAGATA GAAAAAAGGT ACTCGGTACA TAAATATATG TGATTCTGGG TAGAAGATCG - 361 GTCTGCATTG GATGGTGGTA ACGCATTTTT TTACACACAT TACTTGCCTC GAGCATCAAA - 421 TGGTGGTTAT TCGTGGATCT ATATCACGTG ATTTGCTTAA GAATTGTCGT TCATGGTGAC - 481 ACTTTTAGCT TTGACATGAT TAAGCTCATC TCAATTGATG TTATCTAAAG TCATTTCAAC - 541 TATCTAAGAT GTGGTTGTGA TTGGGCCATT TTGTGAAAGC CAGTACGCCA GCGTCAATAC - 601 ACTCCCGTCA ATTAGTTGCA CCATGTCCAC AAAATCATAT ACCAGTAGAG CTGAGACTCA - 661 TGCAAGTCCG GTTGCATCGA AACTTTTACG TTTAATGGAT GAAAAGAAGA CCAATTTGTG - 721 TGCTTCTCTT GACGTTCGTT CGACTGATGA GCTATTGAAA CTTGTTGAAA CGTTGGGTCC - 781 ATACATTTGC CTTTTGAAAA CACACGTTGA TATCTTGGAT GATTTCAGTT ATGAGGGTAC - 841 TGTCGTTCCA TTGAAAGCAT TGGCAGAGAA ATACAAGTTC TTGATATTTG AGGACAGAAA - 901 ATTCGCCGAT ATCGGTAACA CAGTCAAATT ACAATATACA TCGGGCGTTT ACCGTATCGC - 961 AGAATGGTCT GATATCACCA ACGCCCACGG GGTTACTGGT GCTGGTATTG TTGCTGGCTT - 1021 GAAACAAGGT GCGCAAGAGG TCACCAAAGA ACCAAGGGGA TTATTGATGC TTGCTGAATT - 1081 GTCTTCCAAG GGTTCTCTAG CACACGGTGA ATATACTAAG GGTACCGTTG ATATTGCAAA - 1141 GAGTGATAAA GATTTCGTTA TTGGGTTCAT TGCTCAGAAC GATATGGGAG GAAGAGAAGA - 1201 AGGGTTTGAT TGGCTAATCA TGACCCCAGG TGTAGGTTTA GACGACAAAG GCGATGCATT - 1261 GGGTCAGCAG TACAGAACCG TCGACGAAGT TGTAAGTGGT GGATCAGATA TCATCATTGT - 1321 TGGCAGAGGA CTTTTCGCCA AGGGTAGAGA TCCTAAGGTT GAAGGTGAAA GATACAGAAA - 1381 TGCTGGATGG GAAGCGTACC AAAAGAGAAT CAGCGCTCCC CATTAATTAT ACAGGAAACT - 1441 TAATAGAACA AATCACATAT TTAATCTAAT AGCCACCTGC ATTGGCACGG TGCAACACTC - 1501 ACTTCAACTT CATCTTACAA AAGATCACGT GATCTGTTGT ATTGAACTGA AAATTTTTTG - 1561 TTTGCTTCTC TCTCTCTCTT TCATTATGTG AGAGTTTAAA AACCAGAAAC TACATCATCG - 1621 AAAAAGAGTT TAAACCATTA CAACCATTGC GATAAGCCCT CTCAAACTTC CTCCAGACTG - 1681 TTTGTCATCC AATTGGTAAG ATTAATTATC ATATACCCCG GATAAGAAAA GAAGCAAGCA - 1741 CACAATGGAT CAACTTAATG GTAAGGAACA ACAAGAGCCA CCGCGGTGGA GCTCGTTTTC - 1801 GACACTGGAT GGCGGCGTTA GTATCGAATC GACAGCAGTA TAGCGACCAG CATTCACATA - 1861 CGATTGACGC ATGATATTAC TTTCTGCGCA CTTAACTTCG CATCTGGGCA GATGATGTCG - 1921 AGGCGAAAAA AAATATAAAT CACGCTAACA TTTGATTAAA ATAGAACAAC TACAATATAA - 1981 AAAAACTATA CAAATGACAA GTTCTTGAAA ACAAGAATCT TTTTATTGTC AGTACTGATT - 2041 AGAAAAACTC ATCGAGCATC AAATGAAACT GCAATTTATT CATATCAGGA TTATCAATAC - 2101 CATATTTTTG AAAAAGCCGT TTCTGTAATG AAGGAGAAAA CTCACCGAGG CAGTTCCATA - 2161 GGATGGCAAG ATCCTGGTAT CGGTCTGCGA TTCCGACTCG TCCAACATCA ATACAACCTA - 2221 TTAATTTCCC CTCGTCAAAA ATAAGGTTAT CAAGTGAGAA ATCACCATGA GTGACGACTG - 2281 AATCCGGTGA GAATGGCAAA AGCTTATGCA TTTCTTTCCA GACTTGTTCA ACAGGCCAGC - 2341 CATTACGCTC GTCATCAAAA TCACTCGCAT CAACCAAACC GTTATTCATT CGTGATTGCG - 2401 CCTGAGCGAG ACGAAATACG CGATCGCTGT TAAAAGGACA ATTACAAACA GGAATCGAAT - 2461 GCAACCGGCG CAGGAACACT GCCAGCGCAT CAACAATATT TTCACCTGAA TCAGGATATT - 2521 CTTCTAATAC CTGGAATGCT GTTTTGCCGG GGATCGCAGT GGTGAGTAAC CATGCATCAT - 2581 CAGGAGTACG GATAAAATGC TTGATGGTCG GAAGAGGCAT AAATTCCGTC AGCCAGTTTA - 2641 GTCTGACCAT CTCATCTGTA ACATCATTGG CAACGCTACC TTTGCCATGT TTCAGAAACA - 2701 ACTCTGGCGC ATCGGGCTTC CCATACAATC GATAGATTGT CGCACCTGAT TGCCCGACAT - 2761 TATCGCGAGC CCATTTATAC CCATATAAAT CAGCATCCAT GTTGGAATTT AATCGCGGCC - 2821 TCGAAACGTG AGTCTTTTCC TTACCCATGG TTGTTTATGT TCGGATGTGA TGTGAGAACT - 2881 GTATCCTAGC AAGATTTTAA AAGGAAGTAT ATGAAAGAAG AACCTCAGTG GCAAATCCTA - 2941 ACCTTTTATA TTTCTCTACA GGGGCGCGGC GTGGGGACAA TTCAACGCGT CTGTGAGGGG - 3001 AGCGTTTCCC TGCTCGCAGG TCTGCAGCGA GGAGCCGTAA TTTTTGCTTC GCGCCGTGCG - 3061 GCCATCAAAA TGTATGGATG CAAATGATTA TACATGGGGA TGTATGGGCT AAATGTACGG - 3121 GCGACAGTCA CATCATGCCC CTGAGCTGCG CACGTCAAGA CTGTCAAGGA GGGTATTCTG - 3181 GGCCTCCATG TCGCTGGCCG GGTGACCCGG CGGGGACGAG GCAAGCTAAA CAGATCTGAC - 3241 TTATTATTTC AGGAAAGTTT CGGAGGAGAT AGTGTTCGGC AGTTTGTACA TCATCTGCGG - 3301 GATCAGGTAC GGTTTGATCA GGTTGTAGAA GATCAGGTAA GACATAGAAT CGATGTAGAT - 3361 GATCGGTTTG TTTTTGTTGA TTTTTACGTA ACAGTTCAGT TGGAATTTGT TACGCAGACC - 3421 CTTAACCAGG TATTCTACTT CTTCGAAAGT GAAAGACTGG GTGTTCAGTA CGATCGATTT - 3481 GTTGGTAGAG TTTTTGTTGT AATCCCATTT ACCACCATCA TCCATGAACC AGTATGCCAG - 3541 AGACATCGGG GTCAGGTAGT TTTCAACCAG GTTGTTCGGG ATGGTTTTTT TGTTGTTAAC - 3601 GATGAACAGG TTAGCCAGTT TGTTGAAAGC TTGGTGTTTG AAAGTCTGGG CGCCCCAGGT - 3661 GATTACCAGG TTACCCAGGT GGTTAACACG TTCTTTTTTG TGCGGCGGGG ACAGTACCCA - 3721 CTGATCGTAC AGCAGACATA CGTGGTCCAT GTATGCTTTG TTTTTCCACT CGAACTGCAT - 3781 ACAGTAGGTT TTACCTTCAT CACGAGAACG GATGTAAGCA TCACCCAGGA TCAGACCGAT - 3841 ACCTGCTTCG AACTGTTCGA TGTTCAGTTC GATCAGCTGG GATTTGTATT CTTTCAGCAG - 3901 TTTAGAGTTC GGACCCAGGT TCATTACCTG GTTTTTTTTG ATGTTTTTCA TATGCATGGA - 3961 TCCGGGGTTT TTTCTCCTTG ACGTTAAAGT ATAGAGGTAT ATTAACAATT TTTTGTTGAT - 4021 ACTTTTATTA CATTTGAATA AGAAGTAATA CAAACCGAAA ATGTTGAAAG TATTAGTTAA - 4081 AGTGGTTATG CAGTTTTTGC ATTTATATAT CTGTTAATAG ATCAAAAATC ATCGCTTCGC - 4141 TGATTAATTA CCCCAGAAAT AAGGCTAAAA AACTAATCGC ATTATCATCC TATGGTTGTT - 4201 AATTTGATTC GTTCATTTGA AGGTTTGTGG GGCCAGGTTA CTGCCAATTT TTCCTCTTCA - 4261 TAACCATAAA AGCTAGTATT GTAGAATCTT TATTGTTCGG AGCAGTGCGG CGCGAGGCAC - 4321 ATCTGCGTTT CAGGAACGCG ACCGGTGAAG ACGAGGACGC ACGGAGGAGA GTCTTCCTTC - 4381 GGAGGGCTGT CACCCGCTCG GCGGCTTCTA ATCCGTACTT CAATATAGCA ATGAGCAGTT - 4441 AAGCGTATTA CTGAAAGTTC CAAAGAGAAG GTTTTTTTAG GCTAAGATAA TGGGGCTCTT - 4501 TACATTTCCA CAACATATAA GTAAGATTAG ATATGGATAT GTATATGGAT ATGTATATGG - 4561 TGGTAATGCC ATGTAATATG ATTATTAAAC TTCTTTGCGT CCATCCAACG AGATCTGGCG - 4621 CGCCTTAATT AACCCAACCT GCATTAATGA ATCGGCCAAC GCGCGGGGAG AGGCGGTTTG - 4681 CGTATTGGGC GCTCTTCCGC TTCCTCGCTC ACTGACTCGC TGCGCTCGGT CGTTCGGCTG - 4741 CGGCGAGCGG TATCAGCTCA CTCAAAGGCG GTAATACGGT TATCCACAGA ATCAGGGGAT - 4801 AACGCAGGAA AGAACATGTG AGCAAAAGGC CAGCAAAAGG CCAGGAACCG TAAAAAGGCC - 4861 GCGTTGCTGG CGTTTTTCCA TAGGCTCCGC CCCCCTGACG AGCATCACAA AAATCGACGC - 4921 TCAAGTCAGA GGTGGCGAAA CCCGACAGGA CTATAAAGAT ACCAGGCGTT TCCCCCTGGA - 4981 AGCTCCCTCG TGCGCTCTCC TGTTCCGACC CTGCCGCTTA CCGGATACCT GTCCGCCTTT - 5041 CTCCCTTCGG GAAGCGTGGC GCTTTCTCAA TGCTCACGCT GTAGGTATCT CAGTTCGGTG - 5101 TAGGTCGTTC GCTCCAAGCT GGGCTGTGTG CACGAACCCC CCGTTCAGCC CGACCGCTGC - 5161 GCCTTATCCG GTAACTATCG TCTTGAGTCC AACCCGGTAA GACACGACTT ATCGCCACTG - 5221 GCAGCAGCCA CTGGTAACAG GATTAGCAGA GCGAGGTATG TAGGCGGTGC TACAGAGTTC - 5281 TTGAAGTGGT GGCCTAACTA CGGCTACACT AGAAGGACAG TATTTGGTAT CTGCGCTCTG - 5341 CTGAAGCCAG TTACCTTCGG AAAAAGAGTT GGTAGCTCTT GATCCGGCAA ACAAACCACC - 5401 GCTGGTAGCG GTGGTTTTTT TGTTTGCAAG CAGCAGATTA CGCGCAGAAA AAAAGGATCT - 5461 CAAGAAGATC CTTTGATCTT TTCTACGGGG TCTGACGCTC AGTGGAACGA AAACTCACGT - 5521 TAAGGGATTT TGGTCATGAG ATTATCAAAA AGGATCTTCA CCTAGATCCT TTTAAATTAA - 5581 AAATGAAGTT TTAAATCAAT CTAAAGTATA TATGAGTAAA CTTGGTCTGA CAGTTACCAA - 5641 TGCTTAATCA GTGAGGCACC TATCTCAGCG ATCTGTCTAT TTCGTTCATC CATAGTTGCC - 5701 TGACTCCCCG TCGTGTAGAT AACTACGATA CGGGAGGGCT TACCATCTGG CCCCAGTGCT - 5761 GCAATGATAC CGCGAGACCC ACGCTCACCG GCTCCAGATT TATCAGCAAT AAACCAGCCA - 5821 GCCGGAAGGG CCGAGCGCAG AAGTGGTCCT GCAACTTTAT CCGCCTCCAT CCAGTCTATT - 5881 AATTGTTGCC GGGAAGCTAG AGTAAGTAGT TCGCCAGTTA ATAGTTTGCG CAACGTTGTT - 5941 GCCATTGCTA CAGGCATCGT GGTGTCACGC TCGTCGTTTG GTATGGCTTC ATTCAGCTCC - 6001 GGTTCCCAAC GATCAAGGCG AGTTACATGA TCCCCCATGT TGTGCAAAAA AGCGGTTAGC - 6061 TCCTTCGGTC CTCCGATCGT TGTCAGAAGT AAGTTGGCCG CAGTGTTATC ACTCATGGTT - 6121 ATGGCAGCAC TGCATAATTC TCTTACTGTC ATGCCATCCG TAAGATGCTT TTCTGTGACT - 6181 GGTGAGTACT CAACCAAGTC ATTCTGAGAA TAGTGTATGC GGCGACCGAG TTGCTCTTGC - 6241 CCGGCGTCAA TACGGGATAA TACCGCGCCA CATAGCAGAA CTTTAAAAGT GCTCATCATT - 6301 GGAAAACGTT CTTCGGGGCG AAAACTCTCA AGGATCTTAC CGCTGTTGAG ATCCAGTTCG - 6361 ATGTAACCCA CTCGTGCACC CAACTGATCT TCAGCATCTT TTACTTTCAC CAGCGTTTCT - 6421 GGGTGAGCAA AAACAGGAAG GCAAAATGCC GCAAAAAAGG GAATAAGGGC GACACGGAAA - 6481 TGTTGAATAC TCATACTCTT CCTTTTTCAA TATTATTGAA GCATTTATCA GGGTTATTGT - 6541 CTCATGAGCG GATACATATT TGAATGTATT TAGAAAAATA AACAAATAGG GGTTCCGCGC - 6601 ACATTTCCCC GAAAAGTGCC ACCTGACGTC TAAGAAACCA TTATTATCAT GACATTAACC - 6661 TATAAAAATA GGCGTATCAC GAGGCCCTTT CGTCTCGCGC GTTTCGGTGA TGACGGTGAA - 6721 AACCTCTGAC ACATGCAGCT CCCGGAGACG GTCACAGCTT GTCTGTAAGC GGATGCCGGG - 6781 AGCAGACAAG CCCGTCAGGG CGCGTCAGCG GGTGTTGGCG GGTGTCGGGG CTGGCTTAAC - 6841 TATGCGGCAT CAGAGCAGAT TGTACTGAGA GTGCACCATA TGGACATATT GTCGTTAGAA - 6901 CGCGGCTACA ATTAATACAT AACCTTATGT ATCATACACA TACGATTTAG GTGACACTAT - 6961 A + 1 gaacgcggcc gccagctgaa gcttcgtacg ctgcaggtcg acggatcccc ctggcacgac + 61 aggtttcccg actggaaagc gggcagtgag cgcaacgcaa ttaatgtgag ttacctcact + 121 cattaggcac cccaggcttt acactttatg cttccggctc ctatgttgtg tggaattgtg + 181 agcggataac aatttcacac aggaaacagc tatgaccatg attacgccaa gctcggaatt + 241 aaccctcact aaagggaaca aaagctgggt accgcggaga caatcatatg ggagaagcaa + 301 ttggaagata gaaaaaaggt actcggtaca taaatatatg tgattctggg tagaagatcg + 361 gtctgcattg gatggtggta acgcattttt ttacacacat tacttgcctc gagcatcaaa + 421 tggtggttat tcgtggatct atatcacgtg atttgcttaa gaattgtcgt tcatggtgac + 481 acttttagct ttgacatgat taagctcatc tcaattgatg ttatctaaag tcatttcaac + 541 tatctaagat gtggttgtga ttgggccatt ttgtgaaagc cagtacgcca gcgtcaatac + 601 actcccgtca attagttgca ccatgtccac aaaatcatat accagtagag ctgagactca + 661 tgcaagtccg gttgcatcga aacttttacg tttaatggat gaaaagaaga ccaatttgtg + 721 tgcttctctt gacgttcgtt cgactgatga gctattgaaa cttgttgaaa cgttgggtcc + 781 atacatttgc cttttgaaaa cacacgttga tatcttggat gatttcagtt atgagggtac + 841 tgtcgttcca ttgaaagcat tggcagagaa atacaagttc ttgatatttg aggacagaaa + 901 attcgccgat atcggtaaca cagtcaaatt acaatataca tcgggcgttt accgtatcgc + 961 agaatggtct gatatcacca acgcccacgg ggttactggt gctggtattg ttgctggctt + 1021 gaaacaaggt gcgcaagagg tcaccaaaga accaagggga ttattgatgc ttgctgaatt + 1081 gtcttccaag ggttctctag cacacggtga atatactaag ggtaccgttg atattgcaaa + 1141 gagtgataaa gatttcgtta ttgggttcat tgctcagaac gatatgggag gaagagaaga + 1201 agggtttgat tggctaatca tgaccccagg tgtaggttta gacgacaaag gcgatgcatt + 1261 gggtcagcag tacagaaccg tcgacgaagt tgtaagtggt ggatcagata tcatcattgt + 1321 tggcagagga cttttcgcca agggtagaga tcctaaggtt gaaggtgaaa gatacagaaa + 1381 tgctggatgg gaagcgtacc aaaagagaat cagcgctccc cattaattat acaggaaact + 1441 taatagaaca aatcacatat ttaatctaat agccacctgc attggcacgg tgcaacactc + 1501 acttcaactt catcttacaa aagatcacgt gatctgttgt attgaactga aaattttttg + 1561 tttgcttctc tctctctctt tcattatgtg agagtttaaa aaccagaaac tacatcatcg + 1621 aaaaagagtt taaaccatta caaccattgc gataagccct ctcaaacttc ctccagactg + 1681 tttgtcatcc aattggtaag attaattatc atataccccg gataagaaaa gaagcaagca + 1741 cacaatggat caacttaatg gtaaggaaca acaagagcca ccgcggtgga gctcgttttc + 1801 gacactggat ggcggcgtta gtatcgaatc gacagcagta tagcgaccag cattcacata + 1861 cgattgacgc atgatattac tttctgcgca cttaacttcg catctgggca gatgatgtcg + 1921 aggcgaaaaa aaatataaat cacgctaaca tttgattaaa atagaacaac tacaatataa + 1981 aaaaactata caaatgacaa gttcttgaaa acaagaatct ttttattgtc agtactgatt + 2041 agaaaaactc atcgagcatc aaatgaaact gcaatttatt catatcagga ttatcaatac + 2101 catatttttg aaaaagccgt ttctgtaatg aaggagaaaa ctcaccgagg cagttccata + 2161 ggatggcaag atcctggtat cggtctgcga ttccgactcg tccaacatca atacaaccta + 2221 ttaatttccc ctcgtcaaaa ataaggttat caagtgagaa atcaccatga gtgacgactg + 2281 aatccggtga gaatggcaaa agcttatgca tttctttcca gacttgttca acaggccagc + 2341 cattacgctc gtcatcaaaa tcactcgcat caaccaaacc gttattcatt cgtgattgcg + 2401 cctgagcgag acgaaatacg cgatcgctgt taaaaggaca attacaaaca ggaatcgaat + 2461 gcaaccggcg caggaacact gccagcgcat caacaatatt ttcacctgaa tcaggatatt + 2521 cttctaatac ctggaatgct gttttgccgg ggatcgcagt ggtgagtaac catgcatcat + 2581 caggagtacg gataaaatgc ttgatggtcg gaagaggcat aaattccgtc agccagttta + 2641 gtctgaccat ctcatctgta acatcattgg caacgctacc tttgccatgt ttcagaaaca + 2701 actctggcgc atcgggcttc ccatacaatc gatagattgt cgcacctgat tgcccgacat + 2761 tatcgcgagc ccatttatac ccatataaat cagcatccat gttggaattt aatcgcggcc + 2821 tcgaaacgtg agtcttttcc ttacccatgg ttgtttatgt tcggatgtga tgtgagaact + 2881 gtatcctagc aagattttaa aaggaagtat atgaaagaag aacctcagtg gcaaatccta + 2941 accttttata tttctctaca ggggcgcggc gtggggacaa ttcaacgcgt ctgtgagggg + 3001 agcgtttccc tgctcgcagg tctgcagcga ggagccgtaa tttttgcttc gcgccgtgcg + 3061 gccatcaaaa tgtatggatg caaatgatta tacatgggga tgtatgggct aaatgtacgg + 3121 gcgacagtca catcatgccc ctgagctgcg cacgtcaaga ctgtcaagga gggtattctg + 3181 ggcctccatg tcgctggccg ggtgacccgg cggggacgag gcaagctaaa cagatctgac + 3241 ttattatttc aggaaagttt cggaggagat agtgttcggc agtttgtaca tcatctgcgg + 3301 gatcaggtac ggtttgatca ggttgtagaa gatcaggtaa gacatagaat cgatgtagat + 3361 gatcggtttg tttttgttga tttttacgta acagttcagt tggaatttgt tacgcagacc + 3421 cttaaccagg tattctactt cttcgaaagt gaaagactgg gtgttcagta cgatcgattt + 3481 gttggtagag tttttgttgt aatcccattt accaccatca tccatgaacc agtatgccag + 3541 agacatcggg gtcaggtagt tttcaaccag gttgttcggg atggtttttt tgttgttaac + 3601 gatgaacagg ttagccagtt tgttgaaagc ttggtgtttg aaagtctggg cgccccaggt + 3661 gattaccagg ttacccaggt ggttaacacg ttcttttttg tgcggcgggg acagtaccca + 3721 ctgatcgtac agcagacata cgtggtccat gtatgctttg tttttccact cgaactgcat + 3781 acagtaggtt ttaccttcat cacgagaacg gatgtaagca tcacccagga tcagaccgat + 3841 acctgcttcg aactgttcga tgttcagttc gatcagctgg gatttgtatt ctttcagcag + 3901 tttagagttc ggacccaggt tcattacctg gttttttttg atgtttttca tatgcatgga + 3961 tccggggttt tttctccttg acgttaaagt atagaggtat attaacaatt ttttgttgat + 4021 acttttatta catttgaata agaagtaata caaaccgaaa atgttgaaag tattagttaa + 4081 agtggttatg cagtttttgc atttatatat ctgttaatag atcaaaaatc atcgcttcgc + 4141 tgattaatta ccccagaaat aaggctaaaa aactaatcgc attatcatcc tatggttgtt + 4201 aatttgattc gttcatttga aggtttgtgg ggccaggtta ctgccaattt ttcctcttca + 4261 taaccataaa agctagtatt gtagaatctt tattgttcgg agcagtgcgg cgcgaggcac + 4321 atctgcgttt caggaacgcg accggtgaag acgaggacgc acggaggaga gtcttccttc + 4381 ggagggctgt cacccgctcg gcggcttcta atccgtactt caatatagca atgagcagtt + 4441 aagcgtatta ctgaaagttc caaagagaag gtttttttag gctaagataa tggggctctt + 4501 tacatttcca caacatataa gtaagattag atatggatat gtatatggat atgtatatgg + 4561 tggtaatgcc atgtaatatg attattaaac ttctttgcgt ccatccaacg agatctggcg + 4621 cgccttaatt aacccaacct gcattaatga atcggccaac gcgcggggag aggcggtttg + 4681 cgtattgggc gctcttccgc ttcctcgctc actgactcgc tgcgctcggt cgttcggctg + 4741 cggcgagcgg tatcagctca ctcaaaggcg gtaatacggt tatccacaga atcaggggat + 4801 aacgcaggaa agaacatgtg agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc + 4861 gcgttgctgg cgtttttcca taggctccgc ccccctgacg agcatcacaa aaatcgacgc + 4921 tcaagtcaga ggtggcgaaa cccgacagga ctataaagat accaggcgtt tccccctgga + 4981 agctccctcg tgcgctctcc tgttccgacc ctgccgctta ccggatacct gtccgccttt + 5041 ctcccttcgg gaagcgtggc gctttctcaa tgctcacgct gtaggtatct cagttcggtg + 5101 taggtcgttc gctccaagct gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc + 5161 gccttatccg gtaactatcg tcttgagtcc aacccggtaa gacacgactt atcgccactg + 5221 gcagcagcca ctggtaacag gattagcaga gcgaggtatg taggcggtgc tacagagttc + 5281 ttgaagtggt ggcctaacta cggctacact agaaggacag tatttggtat ctgcgctctg + 5341 ctgaagccag ttaccttcgg aaaaagagtt ggtagctctt gatccggcaa acaaaccacc + 5401 gctggtagcg gtggtttttt tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct + 5461 caagaagatc ctttgatctt ttctacgggg tctgacgctc agtggaacga aaactcacgt + 5521 taagggattt tggtcatgag attatcaaaa aggatcttca cctagatcct tttaaattaa + 5581 aaatgaagtt ttaaatcaat ctaaagtata tatgagtaaa cttggtctga cagttaccaa + 5641 tgcttaatca gtgaggcacc tatctcagcg atctgtctat ttcgttcatc catagttgcc + 5701 tgactccccg tcgtgtagat aactacgata cgggagggct taccatctgg ccccagtgct + 5761 gcaatgatac cgcgagaccc acgctcaccg gctccagatt tatcagcaat aaaccagcca + 5821 gccggaaggg ccgagcgcag aagtggtcct gcaactttat ccgcctccat ccagtctatt + 5881 aattgttgcc gggaagctag agtaagtagt tcgccagtta atagtttgcg caacgttgtt + 5941 gccattgcta caggcatcgt ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc + 6001 ggttcccaac gatcaaggcg agttacatga tcccccatgt tgtgcaaaaa agcggttagc + 6061 tccttcggtc ctccgatcgt tgtcagaagt aagttggccg cagtgttatc actcatggtt + 6121 atggcagcac tgcataattc tcttactgtc atgccatccg taagatgctt ttctgtgact + 6181 ggtgagtact caaccaagtc attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc + 6241 ccggcgtcaa tacgggataa taccgcgcca catagcagaa ctttaaaagt gctcatcatt + 6301 ggaaaacgtt cttcggggcg aaaactctca aggatcttac cgctgttgag atccagttcg + 6361 atgtaaccca ctcgtgcacc caactgatct tcagcatctt ttactttcac cagcgtttct + 6421 gggtgagcaa aaacaggaag gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa + 6481 tgttgaatac tcatactctt cctttttcaa tattattgaa gcatttatca gggttattgt + 6541 ctcatgagcg gatacatatt tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc + 6601 acatttcccc gaaaagtgcc acctgacgtc taagaaacca ttattatcat gacattaacc + 6661 tataaaaata ggcgtatcac gaggcccttt cgtctcgcgc gtttcggtga tgacggtgaa + 6721 aacctctgac acatgcagct cccggagacg gtcacagctt gtctgtaagc ggatgccggg + 6781 agcagacaag cccgtcaggg cgcgtcagcg ggtgttggcg ggtgtcgggg ctggcttaac + 6841 tatgcggcat cagagcagat tgtactgaga gtgcaccata tggacatatt gtcgttagaa + 6901 cgcggctaca attaatacat aaccttatgt atcatacaca tacgatttag gtgacactat + 6961 a // diff --git a/tests/pGUP1_correct.gb b/tests/pGUP1_correct.gb index 9885e773..64bcc190 100644 --- a/tests/pGUP1_correct.gb +++ b/tests/pGUP1_correct.gb @@ -1,11 +1,12 @@ LOCUS . 9981 bp DNA circular UNK 16-JAN-2013 -DEFINITION circular assembly product 9981 +DEFINITION circular assembly product 9981. ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:40:57 FEATURES Location/Qualifiers misc_feature 40..483 /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} @@ -39,7 +40,7 @@ FEATURES Location/Qualifiers [Evidence IMP] [PMID 18036137]" /GO_function="GO:0015293 - symporter activity [Evidence IEA]" - /codon_start="1" + /codon_start=1 /locus_tag="YGL084C" /note="Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative diff --git a/tests/pGUP1_not_synced.gb b/tests/pGUP1_not_synced.gb index 104217ce..3f6ce3ec 100644 --- a/tests/pGUP1_not_synced.gb +++ b/tests/pGUP1_not_synced.gb @@ -3,9 +3,10 @@ DEFINITION . ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=QiK2pH9yioTPfSobUTLz4CPiNzY 2024-06-11T18:40:13 FEATURES Location/Qualifiers misc_recomb 242..275 /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} diff --git a/tests/pMEC1135.gb b/tests/pMEC1135.gb index 62ac1799..a204d63f 100644 --- a/tests/pMEC1135.gb +++ b/tests/pMEC1135.gb @@ -7,6 +7,7 @@ KEYWORDS . SOURCE ORGANISM . . +COMMENT pydna cdseguid=vgzgy2jh589SklJM_UlauaDH1MM 2024-06-11T18:53:16 FEATURES Location/Qualifiers primer_bind 433..456 /label="167" diff --git a/tests/pMX4blaster2_old.gb b/tests/pMX4blaster2_old.gb index 68254056..4efd8459 100644 --- a/tests/pMX4blaster2_old.gb +++ b/tests/pMX4blaster2_old.gb @@ -3,9 +3,10 @@ DEFINITION . ACCESSION VERSION KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=c48cBUb3wF-Sdhzh0Tlprp-0CEg 2024-06-11T18:43:06 FEATURES Location/Qualifiers primer_bind 433..456 /note="167_pCAPSfw" @@ -84,7 +85,7 @@ FEATURES Location/Qualifiers /note="GIN11 gene; complete sequence, homology to X element of telomere ARS" /gene="GIN11" - /citation="[1]" + /citation=[1] /experiment="experimental evidence, no additional details recorded" /phenotype="growth inhibitory effect when overexpressed" @@ -107,9 +108,9 @@ FEATURES Location/Qualifiers /label="ura3" CDS complement(6861..7664) /product="orotidine-5'-phosphate decarboxylase" - /codon_start="1" + /codon_start=1 /label="orotidine-5'-phosphate decarboxylase" - /transl_table="11" + /transl_table=11 /db_xref="GI:84570490" /translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ diff --git a/tests/pUC19-BamHI-a-rc.gb b/tests/pUC19-BamHI-a-rc.gb index f262527e..336e7bc6 100644 --- a/tests/pUC19-BamHI-a-rc.gb +++ b/tests/pUC19-BamHI-a-rc.gb @@ -1,10 +1,14 @@ -LOCUS pUC19_a 2772 bp ds-DNA circular 18-OCT-2012 +LOCUS pUC19_a 2772 bp ds-DNA circular UNK 18-OCT-2012 DEFINITION . -SOURCE . +ACCESSION pUC19_a +VERSION pUC19_a +KEYWORDS . +SOURCE ORGANISM . -COMMENT -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=eUUhRCQYV5M0ff66VXnU7FjdLRo 2024-06-11T18:27:57 +FEATURES Location/Qualifiers ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -12,9 +16,9 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggGGAT - 421 CCacgcgcat atatatataa ttatagagag taccgatgat gagcagcaga atagatcagt - 481 acgctacgat gatagtagat gaGGATCCtc tagagtcgac ctgcaggcat gcaagcttgg + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggggat + 421 ccacgcgcat atatatataa ttatagagag taccgatgat gagcagcaga atagatcagt + 481 acgctacgat gatagtagat gaggatcctc tagagtcgac ctgcaggcat gcaagcttgg 541 cgtaatcatg gtcatagctg tttcctgtgt gaaattgtta tccgctcaca attccacaca 601 acatacgagc cggaagcata aagtgtaaag cctggggtgc ctaatgagtg agctaactca 661 cattaattgc gttgcgctca ctgcccgctt tccagtcggg aaacctgtcg tgccagctgc diff --git a/tests/pUC19-BamHI-a.gb b/tests/pUC19-BamHI-a.gb index 4d9db104..b636a7a9 100644 --- a/tests/pUC19-BamHI-a.gb +++ b/tests/pUC19-BamHI-a.gb @@ -1,9 +1,14 @@ -LOCUS pUC19_a 2772 bp ds-DNA circular 17-OCT-2012 +LOCUS pUC19_a 2772 bp ds-DNA circular UNK 17-OCT-2012 DEFINITION . -SOURCE . +ACCESSION pUC19_a +VERSION pUC19_a +KEYWORDS . +SOURCE ORGANISM . -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=EQL-mgA3rowFDMQiqm36b7r_yq0 2024-06-11T18:40:19 +FEATURES Location/Qualifiers ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -11,9 +16,9 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggGGAT - 421 CCtcatctac tatcatcgta gcgtactgat ctattctgct gctcatcatc ggtactctct - 481 ataattatat atatatgcgc gtGGATCCtc tagagtcgac ctgcaggcat gcaagcttgg + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggggat + 421 cctcatctac tatcatcgta gcgtactgat ctattctgct gctcatcatc ggtactctct + 481 ataattatat atatatgcgc gtggatcctc tagagtcgac ctgcaggcat gcaagcttgg 541 cgtaatcatg gtcatagctg tttcctgtgt gaaattgtta tccgctcaca attccacaca 601 acatacgagc cggaagcata aagtgtaaag cctggggtgc ctaatgagtg agctaactca 661 cattaattgc gttgcgctca ctgcccgctt tccagtcggg aaacctgtcg tgccagctgc diff --git a/tests/pUC19-EcoRI_PstI-d-rc.gb b/tests/pUC19-EcoRI_PstI-d-rc.gb index 8cd81d3a..c29530a5 100644 --- a/tests/pUC19-EcoRI_PstI-d-rc.gb +++ b/tests/pUC19-EcoRI_PstI-d-rc.gb @@ -1,11 +1,11 @@ -LOCUS pUC19 2733 bp ds-DNA circular 18-OCT-2012 +LOCUS pUC19 2733 bp ds-DNA circular UNK 18-OCT-2012 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c - ORGANISM Cloning vector pUC19c other sequences; artificial sequences; - vectors. + ORGANISM Cloning vector pUC19c other sequences; artificial sequences; vec... + . REFERENCE 1 (bases 1 to 2686) AUTHORS Yanisch-Perron,C., Vieira,J. and Messing,J. TITLE Improved M13 phage cloning vectors and host strains: nucleotide @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These @@ -71,28 +71,28 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION #resistance Ap #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. -COMMENT -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=L6j-ZvvG2YfexN0SlgV0j2NWqK4 2024-06-11T18:27:52 FEATURES Location/Qualifiers source 1..395 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" source 488..2733 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c(1) - /ApEinfo_label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c(1)" + /ApEinfo_label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -100,9 +100,9 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtGAATT Cacgcgcata tatatataat + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cacgcgcata tatatataat 421 tatagagagt accgatgatg agcagcagaa tagatcagta cgctacgatg atagtagatg - 481 aCTGCAGgca tgcaagcttg gcgtaatcat ggtcatagct gtttcctgtg tgaaattgtt + 481 actgcaggca tgcaagcttg gcgtaatcat ggtcatagct gtttcctgtg tgaaattgtt 541 atccgctcac aattccacac aacatacgag ccggaagcat aaagtgtaaa gcctggggtg 601 cctaatgagt gagctaactc acattaattg cgttgcgctc actgcccgct ttccagtcgg 661 gaaacctgtc gtgccagctg cattaatgaa tcggccaacg cgcggggaga ggcggtttgc diff --git a/tests/pUC19-SmaI-a.gb b/tests/pUC19-SmaI-a.gb index 8fc25f7c..a445be1a 100644 --- a/tests/pUC19-SmaI-a.gb +++ b/tests/pUC19-SmaI-a.gb @@ -1,11 +1,11 @@ -LOCUS pUC19 2778 bp ds-DNA circular 18-OCT-2012 +LOCUS pUC19 2778 bp ds-DNA circular UNK 18-OCT-2012 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c - ORGANISM Cloning vector pUC19c other sequences; artificial sequences; - vectors. + ORGANISM Cloning vector pUC19c other sequences; artificial sequences; vec... + . REFERENCE 1 (bases 1 to 2686) AUTHORS Yanisch-Perron,C., Vieira,J. and Messing,J. TITLE Improved M13 phage cloning vectors and host strains: nucleotide @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These @@ -71,28 +71,28 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION #resistance Ap #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. -COMMENT -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=XrjEJVqLXuhLOkv5TsB46SpjE48 2024-06-11T18:40:19 FEATURES Location/Qualifiers source 1..414 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" source 507..2778 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c(1) - /ApEinfo_label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c(1)" + /ApEinfo_label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -100,9 +100,9 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccGGATCC + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggatcc 421 tcatctacta tcatcgtagc gtactgatct attctgctgc tcatcatcgg tactctctat - 481 aattatatat atatgcgcgt GGATCCgggg atcctctaga gtcgacctgc aggcatgcaa + 481 aattatatat atatgcgcgt ggatccgggg atcctctaga gtcgacctgc aggcatgcaa 541 gcttggcgta atcatggtca tagctgtttc ctgtgtgaaa ttgttatccg ctcacaattc 601 cacacaacat acgagccgga agcataaagt gtaaagcctg gggtgcctaa tgagtgagct 661 aactcacatt aattgcgttg cgctcactgc ccgctttcca gtcgggaaac ctgtcgtgcc diff --git a/tests/pUC19.gb b/tests/pUC19.gb index a33a85c3..67a23b49 100644 --- a/tests/pUC19.gb +++ b/tests/pUC19.gb @@ -1,6 +1,6 @@ LOCUS SYNPUC19CV 2686 bp DNA circular SYN 22-MAY-2002 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. @@ -40,68 +40,69 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. - Cloning vector (beta-galactosidase mRNA on complementary strand) ENTRY PUC19C #TYPE DNA CIRCULAR TITLE pUC19c - Cloning vector - (beta-galactosidase mRNA on complementary strand) + (beta-galactosidase mRNA on complementary strand) DATE 03-FEB-1986 - #sequence 16-DEC-1986 + #sequence 16-DEC-1986 ACCESSION VB0033 SOURCE artificial COLLECTION ATCC 37254 REFERENCE - #number - #authors Norrander J., Kempe T., Messing J. - #journal Gene (1983) 26: 101-106 + #number + #authors Norrander J., Kempe T., Messing J. + #journal Gene (1983) 26: 101-106 REFERENCE - #number 1 - #authors Yanisch-Perron C., Vieira J., Messing J. - #journal Gene (1985) 33: 103-119 - #comment shows the complete compiled sequence + #number 1 + #authors Yanisch-Perron C., Vieira J., Messing J. + #journal Gene (1985) 33: 103-119 + #comment shows the complete compiled sequence REFERENCE - #number 2 - #authors Chambers,S.P., et al. - #journal Gene (1988) 68: 139-149 - #describes mutation at nt1308 and its effect on copy number + #number 2 + #authors Chambers,S.P., et al. + #journal Gene (1988) 68: 139-149 + #describes mutation at nt1308 and its effect on copy number REFERENCE - #number - #authors Pouwels P.H., Enger-Valk B.E., Brammar W.J. - #book Cloning Vectors, Elsvier 1985 and supplements - #comment vector I-A-iv-20 + #number + #authors Pouwels P.H., Enger-Valk B.E., Brammar W.J. + #book Cloning Vectors, Elsvier 1985 and supplements + #comment vector I-A-iv-20 COMMENT - This Sequence was obtained 3-MAR-1986 from J. Messing, Waksman - Institute, NJ on floppy disk. - Revised 16-DEC-1986 by F. Pfeiffer: - 1062/3 'AT' to 'TA' to match revised sequence of PBR322 - The beta-galactosidase mRNA sequence including the multiple - cloning site of M13mp19 is on the strand complementary to that - shown. + This Sequence was obtained 3-MAR-1986 from J. Messing, Waksman + Institute, NJ on floppy disk. + Revised 16-DEC-1986 by F. Pfeiffer: + 1062/3 'AT' to 'TA' to match revised sequence of PBR322 + The beta-galactosidase mRNA sequence including the multiple + cloning site of M13mp19 is on the strand complementary to that + shown. KEYWORDS CROSSREFERENCE - #complement - VecBase(3):pUC19 - #prerevised - GenBank(50):M11662, EMBL(11):ARPuc19 - #parent - VecBase(3):pUC13, VecBase(3):M13mp19, VecSource(3):bGal19 + #complement + VecBase(3):pUC19 + #prerevised + GenBank(50):M11662, EMBL(11):ARPuc19 + #parent + VecBase(3):pUC13, VecBase(3):M13mp19, VecSource(3):bGal19 PARENT - Features of pUC19c (2686 bp) - residue source - 1- 137 2074-2210 pBR322 - 138- 237 2252-2351 pBR322 - 238- 395 1461-1304 (c) Lac-Operon - 396- 452 57- 1 (c) polylinker of M13mp19 - 455- 682 1298-1071 (c) Lac-Operon - 683-2686 2352-4355 pBR322 - Conflict (cfl) and Mutations (mut): - pUC19c source - mut 1308 A G 2977 pBR322 linked to increased copy number - mut 1942 A G 3611 pBR322 - mut 2243 T C 3912 pBR322 + Features of pUC19c (2686 bp) + residue source + 1- 137 2074-2210 pBR322 + 138- 237 2252-2351 pBR322 + 238- 395 1461-1304 (c) Lac-Operon + 396- 452 57- 1 (c) polylinker of M13mp19 + 455- 682 1298-1071 (c) Lac-Operon + 683-2686 2352-4355 pBR322 + Conflict (cfl) and Mutations (mut): + pUC19c source + mut 1308 A G 2977 pBR322 linked to increased copy number + mut 1942 A G 3611 pBR322 + mut 2243 T C 3912 pBR322 FEATURE - 1629-2417 789-1 (c) Ap-R; b-lactamase + 1629-2417 789-1 (c) Ap-R; b-lactamase POLYLINKER HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION - #resistance Ap - #indicator beta-galactosidase + #resistance Ap + #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. + pydna cdseguid=mCC0B3UMZfgLyh3Pl574MVjm30U 2024-06-11T18:53:28 FEATURES Location/Qualifiers source 1..2686 /organism="Cloning vector pUC19c" diff --git a/tests/pUC19_M77789.gb b/tests/pUC19_M77789.gb index 9504435c..bb090dba 100644 --- a/tests/pUC19_M77789.gb +++ b/tests/pUC19_M77789.gb @@ -31,6 +31,7 @@ REFERENCE 4 (bases 1 to 2686) Frelinghuysen Road, Piscataway, NJ 08854, USA REMARK Sequence update by submitter COMMENT On Jan 12, 2000 this sequence version replaced M77789.1. + pydna cdseguid=mCC0B3UMZfgLyh3Pl574MVjm30U 2024-06-11T18:40:49 FEATURES Location/Qualifiers source 1..2686 /organism="Cloning vector pUC19" diff --git a/tests/pUC19_MarkBudde.gb b/tests/pUC19_MarkBudde.gb index 97e16e38..98a083c9 100644 --- a/tests/pUC19_MarkBudde.gb +++ b/tests/pUC19_MarkBudde.gb @@ -1,123 +1,123 @@ -LOCUS pUC19 2686 bp DNA circular 18-OCT-2007 -DEFINITION Cloning vector pUC19, complete sequence. -ACCESSION -VERSION -KEYWORDS . -SOURCE Cloning vector pUC19 - ORGANISM Cloning vector pUC19 - other sequences; artificial sequences; vectors. -REFERENCE 1 (bases 1 to 2686) - AUTHORS New England Biolabs. - TITLE Direct Submission - JOURNAL Submitted (18-OCT-2007) Research Department, New England Biolabs, - 240 County Road, Ipswich, MA 01938, USA -COMMENT See also GenBank accession L09137. -FEATURES Location/Qualifiers - source 1..2686 - /organism="Cloning vector pUC19" - /mol_type="other DNA" - gene complement(146..469) - /gene="lacZalpha" - CDS complement(146..469) - /gene="lacZalpha" - /codon_start=1 - /product="beta-galactosidase alpha fragment" - /translation="MTMITPSLHACRSTLEDPRVPSSNSLAVVLQRRDWENPGVTQLN - RLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRIWCTLSTI - CSDAA" - misc_feature 396..452 - /gene="lacZalpha" - /note="multiple cloning site (EcoRI-HindIII)" - -10_signal complement(514..519) - /note="Plac promoter (drives lacZalpha; - counter-clockwise); TATGTT" - -35_signal complement(538..543) - /note="Plac promoter (drives lacZalpha; - counter-clockwise); TTTACA" - protein_bind complement(563..575) - /note="CAP protein binding site" - /bound_moiety="catabolite activator protein (CAP)" - rep_origin complement(867..1455) - /note="pMB1 origin of replication (counter-clockwise) - (RNAII -35 to RNA/DNA switch point)" - misc_RNA complement(867..1419) - /note="RNAII transcript (complementary strand)" - -35_signal 1273..1278 - /note="RNAI promoter (clockwise); TTGAAG" - -10_signal 1295..1300 - /note="RNAI promoter (clockwise); GCTACA" - misc_RNA 1309..1416 - /note="RNAI transcript" - -10_signal complement(1429..1434) - /note="RNAII promoter (counter-clockwise); CGTAAT" - -35_signal complement(1450..1455) - /note="RNAII promoter (counter-clockwise); TTGAGA" - gene complement(1626..2486) - /gene="bla" - CDS complement(1626..2486) - /gene="bla" - /note="ampR (confers resistance to ampicillin)" - /codon_start=1 - /product="beta-lactamase" - /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY - IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE - YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL - DRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL - LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA - EIGASLIKHW" - sig_peptide complement(2418..2486) - /gene="bla" - /note="required for secretion to the periplasm; cleaved - off to form the mature beta-lactamase protein." - -10_signal complement(2530..2535) - /note="bla promoter (counter-clockwise); GAGACA" - -35_signal complement(2551..2556) - /note="bla promoter (counter-clockwise); TTCAAA" -BASE COUNT 667 a 675 c 685 g 659 t -ORIGIN - 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca - 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg - 121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc - 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc - 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat - 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggggat - 421 cctctagagt cgacctgcag gcatgcaagc ttggcgtaat catggtcata gctgtttcct - 481 gtgtgaaatt gttatccgct cacaattcca cacaacatac gagccggaag cataaagtgt - 541 aaagcctggg gtgcctaatg agtgagctaa ctcacattaa ttgcgttgcg ctcactgccc - 601 gctttccagt cgggaaacct gtcgtgccag ctgcattaat gaatcggcca acgcgcgggg - 661 agaggcggtt tgcgtattgg gcgctcttcc gcttcctcgc tcactgactc gctgcgctcg - 721 gtcgttcggc tgcggcgagc ggtatcagct cactcaaagg cggtaatacg gttatccaca - 781 gaatcagggg ataacgcagg aaagaacatg tgagcaaaag gccagcaaaa ggccaggaac - 841 cgtaaaaagg ccgcgttgct ggcgtttttc cataggctcc gcccccctga cgagcatcac - 901 aaaaatcgac gctcaagtca gaggtggcga aacccgacag gactataaag ataccaggcg - 961 tttccccctg gaagctccct cgtgcgctct cctgttccga ccctgccgct taccggatac - 1021 ctgtccgcct ttctcccttc gggaagcgtg gcgctttctc atagctcacg ctgtaggtat - 1081 ctcagttcgg tgtaggtcgt tcgctccaag ctgggctgtg tgcacgaacc ccccgttcag - 1141 cccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccggt aagacacgac - 1201 ttatcgccac tggcagcagc cactggtaac aggattagca gagcgaggta tgtaggcggt - 1261 gctacagagt tcttgaagtg gtggcctaac tacggctaca ctagaagaac agtatttggt - 1321 atctgcgctc tgctgaagcc agttaccttc ggaaaaagag ttggtagctc ttgatccggc - 1381 aaacaaacca ccgctggtag cggtggtttt tttgtttgca agcagcagat tacgcgcaga - 1441 aaaaaaggat ctcaagaaga tcctttgatc ttttctacgg ggtctgacgc tcagtggaac - 1501 gaaaactcac gttaagggat tttggtcatg agattatcaa aaaggatctt cacctagatc - 1561 cttttaaatt aaaaatgaag ttttaaatca atctaaagta tatatgagta aacttggtct - 1621 gacagttacc aatgcttaat cagtgaggca cctatctcag cgatctgtct atttcgttca - 1681 tccatagttg cctgactccc cgtcgtgtag ataactacga tacgggaggg cttaccatct - 1741 ggccccagtg ctgcaatgat accgcgagac ccacgctcac cggctccaga tttatcagca - 1801 ataaaccagc cagccggaag ggccgagcgc agaagtggtc ctgcaacttt atccgcctcc - 1861 atccagtcta ttaattgttg ccgggaagct agagtaagta gttcgccagt taatagtttg - 1921 cgcaacgttg ttgccattgc tacaggcatc gtggtgtcac gctcgtcgtt tggtatggct - 1981 tcattcagct ccggttccca acgatcaagg cgagttacat gatcccccat gttgtgcaaa - 2041 aaagcggtta gctccttcgg tcctccgatc gttgtcagaa gtaagttggc cgcagtgtta - 2101 tcactcatgg ttatggcagc actgcataat tctcttactg tcatgccatc cgtaagatgc - 2161 ttttctgtga ctggtgagta ctcaaccaag tcattctgag aatagtgtat gcggcgaccg - 2221 agttgctctt gcccggcgtc aatacgggat aataccgcgc cacatagcag aactttaaaa - 2281 gtgctcatca ttggaaaacg ttcttcgggg cgaaaactct caaggatctt accgctgttg - 2341 agatccagtt cgatgtaacc cactcgtgca cccaactgat cttcagcatc ttttactttc - 2401 accagcgttt ctgggtgagc aaaaacagga aggcaaaatg ccgcaaaaaa gggaataagg - 2461 gcgacacgga aatgttgaat actcatactc ttcctttttc aatattattg aagcatttat - 2521 cagggttatt gtctcatgag cggatacata tttgaatgta tttagaaaaa taaacaaata - 2581 ggggttccgc gcacatttcc ccgaaaagtg ccacctgacg tctaagaaac cattattatc - 2641 atgacattaa cctataaaaa taggcgtatc acgaggccct ttcgtc -// +LOCUS pUC19 2686 bp DNA circular UNK 18-OCT-2007 +DEFINITION Cloning vector pUC19, complete sequence. +ACCESSION pUC19 +VERSION pUC19 +KEYWORDS . +SOURCE Cloning vector pUC19 + ORGANISM Cloning vector pUC19 + other sequences; artificial sequences; vectors. +REFERENCE 1 (bases 1 to 2686) + AUTHORS New England Biolabs. + TITLE Direct Submission + JOURNAL Submitted (18-OCT-2007) Research Department, New England Biolabs, + 240 County Road, Ipswich, MA 01938, USA +COMMENT See also GenBank accession L09137. + pydna cdseguid=mCC0B3UMZfgLyh3Pl574MVjm30U 2024-06-11T18:40:55 +FEATURES Location/Qualifiers + source 1..2686 + /organism="Cloning vector pUC19" + /mol_type="other DNA" + gene complement(146..469) + /gene="lacZalpha" + CDS complement(146..469) + /gene="lacZalpha" + /codon_start=1 + /product="beta-galactosidase alpha fragment" + /translation="MTMITPSLHACRSTLEDPRVPSSNSLAVVLQRRDWENPGVTQLNR + LAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRIWCTLSTICS + DAA" + misc_feature 396..452 + /gene="lacZalpha" + /note="multiple cloning site (EcoRI-HindIII)" + -10_signal complement(514..519) + /note="Plac promoter (drives lacZalpha; counter-clockwise); + TATGTT" + -35_signal complement(538..543) + /note="Plac promoter (drives lacZalpha; counter-clockwise); + TTTACA" + protein_bind complement(563..575) + /note="CAP protein binding site" + /bound_moiety="catabolite activator protein (CAP)" + rep_origin complement(867..1455) + /note="pMB1 origin of replication (counter-clockwise) + (RNAII -35 to RNA/DNA switch point)" + misc_RNA complement(867..1419) + /note="RNAII transcript (complementary strand)" + -35_signal 1273..1278 + /note="RNAI promoter (clockwise); TTGAAG" + -10_signal 1295..1300 + /note="RNAI promoter (clockwise); GCTACA" + misc_RNA 1309..1416 + /note="RNAI transcript" + -10_signal complement(1429..1434) + /note="RNAII promoter (counter-clockwise); CGTAAT" + -35_signal complement(1450..1455) + /note="RNAII promoter (counter-clockwise); TTGAGA" + gene complement(1626..2486) + /gene="bla" + CDS complement(1626..2486) + /gene="bla" + /note="ampR (confers resistance to ampicillin)" + /codon_start=1 + /product="beta-lactamase" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" + sig_peptide complement(2418..2486) + /gene="bla" + /note="required for secretion to the periplasm; cleaved off + to form the mature beta-lactamase protein." + -10_signal complement(2530..2535) + /note="bla promoter (counter-clockwise); GAGACA" + -35_signal complement(2551..2556) + /note="bla promoter (counter-clockwise); TTCAAA" +ORIGIN + 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca + 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg + 121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc + 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc + 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat + 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccggggat + 421 cctctagagt cgacctgcag gcatgcaagc ttggcgtaat catggtcata gctgtttcct + 481 gtgtgaaatt gttatccgct cacaattcca cacaacatac gagccggaag cataaagtgt + 541 aaagcctggg gtgcctaatg agtgagctaa ctcacattaa ttgcgttgcg ctcactgccc + 601 gctttccagt cgggaaacct gtcgtgccag ctgcattaat gaatcggcca acgcgcgggg + 661 agaggcggtt tgcgtattgg gcgctcttcc gcttcctcgc tcactgactc gctgcgctcg + 721 gtcgttcggc tgcggcgagc ggtatcagct cactcaaagg cggtaatacg gttatccaca + 781 gaatcagggg ataacgcagg aaagaacatg tgagcaaaag gccagcaaaa ggccaggaac + 841 cgtaaaaagg ccgcgttgct ggcgtttttc cataggctcc gcccccctga cgagcatcac + 901 aaaaatcgac gctcaagtca gaggtggcga aacccgacag gactataaag ataccaggcg + 961 tttccccctg gaagctccct cgtgcgctct cctgttccga ccctgccgct taccggatac + 1021 ctgtccgcct ttctcccttc gggaagcgtg gcgctttctc atagctcacg ctgtaggtat + 1081 ctcagttcgg tgtaggtcgt tcgctccaag ctgggctgtg tgcacgaacc ccccgttcag + 1141 cccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccggt aagacacgac + 1201 ttatcgccac tggcagcagc cactggtaac aggattagca gagcgaggta tgtaggcggt + 1261 gctacagagt tcttgaagtg gtggcctaac tacggctaca ctagaagaac agtatttggt + 1321 atctgcgctc tgctgaagcc agttaccttc ggaaaaagag ttggtagctc ttgatccggc + 1381 aaacaaacca ccgctggtag cggtggtttt tttgtttgca agcagcagat tacgcgcaga + 1441 aaaaaaggat ctcaagaaga tcctttgatc ttttctacgg ggtctgacgc tcagtggaac + 1501 gaaaactcac gttaagggat tttggtcatg agattatcaa aaaggatctt cacctagatc + 1561 cttttaaatt aaaaatgaag ttttaaatca atctaaagta tatatgagta aacttggtct + 1621 gacagttacc aatgcttaat cagtgaggca cctatctcag cgatctgtct atttcgttca + 1681 tccatagttg cctgactccc cgtcgtgtag ataactacga tacgggaggg cttaccatct + 1741 ggccccagtg ctgcaatgat accgcgagac ccacgctcac cggctccaga tttatcagca + 1801 ataaaccagc cagccggaag ggccgagcgc agaagtggtc ctgcaacttt atccgcctcc + 1861 atccagtcta ttaattgttg ccgggaagct agagtaagta gttcgccagt taatagtttg + 1921 cgcaacgttg ttgccattgc tacaggcatc gtggtgtcac gctcgtcgtt tggtatggct + 1981 tcattcagct ccggttccca acgatcaagg cgagttacat gatcccccat gttgtgcaaa + 2041 aaagcggtta gctccttcgg tcctccgatc gttgtcagaa gtaagttggc cgcagtgtta + 2101 tcactcatgg ttatggcagc actgcataat tctcttactg tcatgccatc cgtaagatgc + 2161 ttttctgtga ctggtgagta ctcaaccaag tcattctgag aatagtgtat gcggcgaccg + 2221 agttgctctt gcccggcgtc aatacgggat aataccgcgc cacatagcag aactttaaaa + 2281 gtgctcatca ttggaaaacg ttcttcgggg cgaaaactct caaggatctt accgctgttg + 2341 agatccagtt cgatgtaacc cactcgtgca cccaactgat cttcagcatc ttttactttc + 2401 accagcgttt ctgggtgagc aaaaacagga aggcaaaatg ccgcaaaaaa gggaataagg + 2461 gcgacacgga aatgttgaat actcatactc ttcctttttc aatattattg aagcatttat + 2521 cagggttatt gtctcatgag cggatacata tttgaatgta tttagaaaaa taaacaaata + 2581 ggggttccgc gcacatttcc ccgaaaagtg ccacctgacg tctaagaaac cattattatc + 2641 atgacattaa cctataaaaa taggcgtatc acgaggccct ttcgtc +// diff --git a/tests/pUC19_small_gene.gb b/tests/pUC19_small_gene.gb index 10087383..f8ca0a1c 100644 --- a/tests/pUC19_small_gene.gb +++ b/tests/pUC19_small_gene.gb @@ -1,11 +1,11 @@ -LOCUS pUC19 2695 bp ds-DNA circular 25-APR-2014 +LOCUS pUC19 2695 bp ds-DNA circular UNK 25-APR-2014 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c - ORGANISM Cloning vector pUC19c other sequences; artificial sequences; - vectors. + ORGANISM Cloning vector pUC19c other sequences; artificial sequences; vec... + . REFERENCE 1 (bases 1 to 2686) AUTHORS Yanisch-Perron,C., Vieira,J. and Messing,J. TITLE Improved M13 phage cloning vectors and host strains: nucleotide @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These @@ -71,28 +71,28 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION #resistance Ap #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. -COMMENT -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=2d7o7I352H6pcySvbsyp0snm4jk 2024-06-11T18:40:13 FEATURES Location/Qualifiers source 1..414 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" source 424..2695 /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c(1) - /ApEinfo_label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c(1)" + /ApEinfo_label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -100,8 +100,8 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccATGTTT - 421 TAAggggatc ctctagagtc gacctgcagg catgcaagct tggcgtaatc atggtcatag + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccatgttt + 421 taaggggatc ctctagagtc gacctgcagg catgcaagct tggcgtaatc atggtcatag 481 ctgtttcctg tgtgaaattg ttatccgctc acaattccac acaacatacg agccggaagc 541 ataaagtgta aagcctgggg tgcctaatga gtgagctaac tcacattaat tgcgttgcgc 601 tcactgcccg ctttccagtc gggaaacctg tcgtgccagc tgcattaatg aatcggccaa diff --git a/tests/pUC_LAC4.gb b/tests/pUC_LAC4.gb index 9946defc..0bf7ef81 100644 --- a/tests/pUC_LAC4.gb +++ b/tests/pUC_LAC4.gb @@ -1,11 +1,11 @@ -LOCUS pUC_LAC4 6389 bp ds-DNA circular 28-JAN-2014 +LOCUS pUC_LAC4 6389 bp ds-DNA circular UNK 28-JAN-2014 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c - ORGANISM Cloning vector pUC19c other sequences; _artificial_ sequences; - vectors. + ORGANISM Cloning vector pUC19c other sequences; _artificial_ sequences; v... + . REFERENCE 1 (bases 1 to 2686) AUTHORS Yanisch-Perron,C., Vieira,J. and Messing,J. TITLE Improved M13 phage cloning vectors and host strains: nucleotide @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These @@ -71,8 +71,9 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION #resistance Ap #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. -COMMENT -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=3DOixhcqOZw67jiEHAYT6vay1wk 2024-06-11T18:40:55 +FEATURES Location/Qualifiers ORIGIN 1 ggggatcctc tagagtcgac ctgcaggcat gcaagcttgg cgtaatcatg gtcatagctg 61 tttcctgtgt gaaattgtta tccgctcaca attccacaca acatacgagc cggaagcata @@ -118,67 +119,67 @@ ORIGIN 2461 cggtgtgaaa taccgcacag atgcgtaagg agaaaatacc gcatcaggcg ccattcgcca 2521 ttcaggctgc gcaactgttg ggaagggcga tcggtgcggg cctcttcgct attacgccag 2581 ctggcgaaag ggggatgtgc tgcaaggcga ttaagttggg taacgccagg gttttcccag - 2641 tcacgacgtt gtaaaacgac ggccagtgaa ttcgagctcg gtacccAAAA AAAAAATAAA - 2701 CACACATACT CATCGAGAAC TGAAAGATAT GTCTTGCCTT ATTCCTGAGA ATTTAAGGAA - 2761 CCCCAAAAAG GTTCACGAAA ATAGATTGCC TACTAGGGCT TACTACTATG ATCAGGATAT - 2821 TTTCGAATCT CTCAATGGGC CTTGGGCTTT TGCGTTGTTT GATGCACCTC TTGACGCTCC - 2881 GGATGCTAAG AATTTAGACT GGGAAACGGC AAAGAAATGG AGCACCATTT CTGTGCCATC - 2941 CCATTGGGAA CTTCAGGAAG ACTGGAAGTA CGGTAAACCA ATTTACACGA ACGTACAGTA - 3001 CCCTATCCCA ATCGACATCC CAAATCCTCC CACTGTAAAT CCTACTGGTG TTTATGCTAG - 3061 AACTTTTGAA TTAGATTCGA AATCGATTGA GTCGTTCGAG CACAGATTGA GATTTGAGGG - 3121 TGTGGACAAT TGTTACGAGC TTTATGTTAA TGGTCAATAT GTGGGTTTCA ATAAGGGGTC - 3181 CCGTAACGGG GCTGAATTTG ATATCCAAAA GTACGTTTCT GAGGGCGAAA ACTTAGTGGT - 3241 CGTCAAGGTT TTCAAGTGGT CCGATTCCAC TTATATCGAG GACCAAGATC AATGGTGGCT - 3301 CTCTGGTATT TACAGAGACG TTTCTTTACT AAAATTGCCT AAGAAGGCCC ATATTGAAGA - 3361 CGTTAGGGTC ACTACAACTT TTGTGGACTC TCAGTATCAG GATGCAGAGC TTTCTGTGAA - 3421 AGTTGATGTC CAGGGTTCTT CTTATGATCA CATCAATTTC ACACTTTACG AACCTGAAGA - 3481 TGGATCTAAA GTTTACGATG CAAGCTCTTT GTTGAACGAG GAGAATGGGA ACACGACTTT - 3541 TTCAACTAAA GAATTTATTT CCTTCTCCAC CAAAAAGAAC GAAGAAACAG CTTTCAAGAT - 3601 CAACGTCAAG GCCCCAGAAC ATTGGACCGC AGAAAATCCT ACTTTGTACA AGTACCAGTT - 3661 GGATTTAATT GGATCTGATG GCAGTGTGAT TCAATCTATT AAGCACCATG TTGGTTTCAG - 3721 ACAAGTGGAG TTGAAGGACG GTAACATTAC TGTTAATGGC AAAGACATTC TCTTTAGAGG - 3781 TGTCAACAGA CATGATCACC ATCCAAGGTT CGGTAGAGCT GTGCCATTAG ATTTTGTTGT - 3841 TAGGGACTTG ATTCTAATGA AGAAGTTTAA CATCAATGCT GTTCGTAACT CGCATTATCC - 3901 AAACCATCCT AAGGTGTATG ACCTCTTCGA TAAGCTGGGC TTCTGGGTCA TTGACGAGGC - 3961 AGATCTTGAA ACTCATGGTG TTCAAGAGCC ATTTAATCGT CATACGAACT TGGAGGCTGA - 4021 ATATCCAGAT ACTAAAAATA AACTCTACGA TGTTAATGCC CATTACTTAT CAGATAATCC - 4081 AGAGTACGAG GTCGCGTACT TAGACAGAGC TTCCCAACTT GTCCTAAGAG ATGTCAATCA - 4141 TCCTTCGATT ATTATCTGGT CCTTGGGTAA CGAAGCTTGT TATGGCAGAA ACCACAAAGC - 4201 CATGTACAAG TTAATTAAAC AATTGGATCC TACCAGACTT GTGCATTATG AGGGTGACTT - 4261 GAACGCTTTG AGTGCAGATA TCTTTAGTTT CATGTACCCA ACATTTGAAA TTATGGAAAG - 4321 GTGGAGGAAG AACCACACTG ATGAAAATGG TAAGTTTGAA AAGCCTTTGA TCTTGTGTGA - 4381 GTACGGCCAT GCAATGGGTA ACGGTCCTGG CTCTTTGAAA GAATATCAAG AGTTGTTCTA - 4441 CAAGGAGAAG TTTTACCAAG GTGGCTTTAT CTGGGAATGG GCAAATCACG GTATTGAATT - 4501 CGAAGATGTT AGTACTGCAG ATGGTAAGTT GCATAAAGCT TATGCTTATG GTGGTGACTT - 4561 TAAGGAAGAG GTTCATGACG GAGTGTTCAT CATGGATGGT TTGTGTAACA GTGAGCATAA - 4621 TCCTACTCCG GGCCTTGTAG AGTATAAGAA GGTTATTGAA CCCGTTCATA TTAAAATTGC - 4681 GCACGGATCT GTAACAATCA CAAATAAGCA CGACTTCATT ACGACAGACC ACTTATTGTT - 4741 TATCGACAAG GACACGGGAA AGACAATCGA CGTTCCATCT TTAAAGCCAG AAGAATCTGT - 4801 TACTATTCCT TCTGATACAA CTTATGTTGT TGCCGTGTTG AAAGATGATG CTGGTGTTCT - 4861 AAAGGCAGGT CATGAAATTG CCTGGGGCCA AGCTGAACTT CCATTGAAGG TACCCGATTT - 4921 TGTTACAGAG ACAGCAGAAA AAGCTGCGAA GATCAACGAC GGTAAACGTT ATGTCTCAGT - 4981 TGAATCCAGT GGATTGCATT TTATCTTGGA CAAATTGTTG GGTAAAATTG AAAGCCTAAA - 5041 GGTCAAGGGT AAGGAAATTT CCAGCAAGTT TGAGGGTTCT TCAATCACTT TCTGGAGACC - 5101 TCCAACGAAT AATGATGAAC CTAGGGACTT TAAGAACTGG AAGAAGTACA ATATTGATTT - 5161 AATGAAGCAA AACATCCATG GAGTGAGTGT CGAAAAAGGT TCTAATGGTT CTCTAGCTGT - 5221 AGTCACGGTT AACTCTCGTA TATCCCCAGT TGTATTTTAC TATGGGTTTG AGACTGTTCA - 5281 GAAGTACACG ATCTTTGCTA ACAAAATAAA CTTGAACACT TCTATGAAGC TTACTGGCGA - 5341 ATATCAGCCT CCTGATTTCC CAAGAGTTGG GTACGAATTC TGGCTAGGAG ATAGTTATGA - 5401 ATCATTTGAA TGGTTAGGTC GCGGGCCCGG CGAATCATAT CCGGATAAGA AGGAATCTCA - 5461 AAGATTCGGT CTTTACGATT CCAAAGATGT AGAGGAATTC GTATATGACT ATCCTCAAGA - 5521 AAATGGAAAT CATACAGATA CCCACTTTTT GAACATCAAA TTTGAAGGTG CAGGAAAACT - 5581 ATCGATCTTC CAAAAGGAGA AGCCATTTAA CTTCAAGATT TCAGACGAAT ACGGGGTTGA - 5641 TGAAGCTGCC CACGCTTGTG ACGTTAAAAG ATACGGCAGA CACTATCTAA GGTTGGACCA - 5701 TGCAATCCAT GGTGTTGGTA GCGAAGCATG CGGACCTGCT GTTCTGGACC AGTACAGATT - 5761 GAAAGCTCAA GATTTCAACT TTGAGTTTGA TCTCGCTTTT GAATAAGAAT TTTATACTTA - 5821 GATAAGTATG TACTTACAGG TATATTTCTA TGAGATACTG ATGTATACAT GCATGATAAT - 5881 ATTTAAACGG TTATTAGTGC CGATTGTCTT GTGCGATAAT GACGTTCCTA TCAAAGCAAT - 5941 ACACTTACCA CCTATTACAT GGGCCAAGAA AATATTTTCG AACTTGTTTA GAATATTAGC - 6001 ACAGAGTATA TGATGATATC CGTTAGATTA TGCATGATTC ATTCCTACAA CTTTTTCGTA - 6061 GCATAAGGAT TAATTACTTG GATGCCAATA AAAAAAAAAA ACATCGAGAA AATTTCAGCA - 6121 TGCTCAGAAA CAATTGCAGT GTATCAAAGT AAAAAAAAGA TTTTCACTAC ATGTTCCTTT - 6181 TGAAGAAAGA AAATCATGGA ACATTAGATT TACAAAAATT TAACCACCGC TGATTAACGA - 6241 TTAGACCGTT AAGCGCACAA CAGGTTATTA GTACAGAGAA AGCATTCTGT GGTGTTGCCC - 6301 CGGACTTTCT TTTGCGACAT AGGTAAATCG AATACCATCA TACTATCTTT TCCAATGACT - 6361 CCCTAAAGAA AGACTCTTCT TCGATGTTG + 2641 tcacgacgtt gtaaaacgac ggccagtgaa ttcgagctcg gtacccaaaa aaaaaataaa + 2701 cacacatact catcgagaac tgaaagatat gtcttgcctt attcctgaga atttaaggaa + 2761 ccccaaaaag gttcacgaaa atagattgcc tactagggct tactactatg atcaggatat + 2821 tttcgaatct ctcaatgggc cttgggcttt tgcgttgttt gatgcacctc ttgacgctcc + 2881 ggatgctaag aatttagact gggaaacggc aaagaaatgg agcaccattt ctgtgccatc + 2941 ccattgggaa cttcaggaag actggaagta cggtaaacca atttacacga acgtacagta + 3001 ccctatccca atcgacatcc caaatcctcc cactgtaaat cctactggtg tttatgctag + 3061 aacttttgaa ttagattcga aatcgattga gtcgttcgag cacagattga gatttgaggg + 3121 tgtggacaat tgttacgagc tttatgttaa tggtcaatat gtgggtttca ataaggggtc + 3181 ccgtaacggg gctgaatttg atatccaaaa gtacgtttct gagggcgaaa acttagtggt + 3241 cgtcaaggtt ttcaagtggt ccgattccac ttatatcgag gaccaagatc aatggtggct + 3301 ctctggtatt tacagagacg tttctttact aaaattgcct aagaaggccc atattgaaga + 3361 cgttagggtc actacaactt ttgtggactc tcagtatcag gatgcagagc tttctgtgaa + 3421 agttgatgtc cagggttctt cttatgatca catcaatttc acactttacg aacctgaaga + 3481 tggatctaaa gtttacgatg caagctcttt gttgaacgag gagaatggga acacgacttt + 3541 ttcaactaaa gaatttattt ccttctccac caaaaagaac gaagaaacag ctttcaagat + 3601 caacgtcaag gccccagaac attggaccgc agaaaatcct actttgtaca agtaccagtt + 3661 ggatttaatt ggatctgatg gcagtgtgat tcaatctatt aagcaccatg ttggtttcag + 3721 acaagtggag ttgaaggacg gtaacattac tgttaatggc aaagacattc tctttagagg + 3781 tgtcaacaga catgatcacc atccaaggtt cggtagagct gtgccattag attttgttgt + 3841 tagggacttg attctaatga agaagtttaa catcaatgct gttcgtaact cgcattatcc + 3901 aaaccatcct aaggtgtatg acctcttcga taagctgggc ttctgggtca ttgacgaggc + 3961 agatcttgaa actcatggtg ttcaagagcc atttaatcgt catacgaact tggaggctga + 4021 atatccagat actaaaaata aactctacga tgttaatgcc cattacttat cagataatcc + 4081 agagtacgag gtcgcgtact tagacagagc ttcccaactt gtcctaagag atgtcaatca + 4141 tccttcgatt attatctggt ccttgggtaa cgaagcttgt tatggcagaa accacaaagc + 4201 catgtacaag ttaattaaac aattggatcc taccagactt gtgcattatg agggtgactt + 4261 gaacgctttg agtgcagata tctttagttt catgtaccca acatttgaaa ttatggaaag + 4321 gtggaggaag aaccacactg atgaaaatgg taagtttgaa aagcctttga tcttgtgtga + 4381 gtacggccat gcaatgggta acggtcctgg ctctttgaaa gaatatcaag agttgttcta + 4441 caaggagaag ttttaccaag gtggctttat ctgggaatgg gcaaatcacg gtattgaatt + 4501 cgaagatgtt agtactgcag atggtaagtt gcataaagct tatgcttatg gtggtgactt + 4561 taaggaagag gttcatgacg gagtgttcat catggatggt ttgtgtaaca gtgagcataa + 4621 tcctactccg ggccttgtag agtataagaa ggttattgaa cccgttcata ttaaaattgc + 4681 gcacggatct gtaacaatca caaataagca cgacttcatt acgacagacc acttattgtt + 4741 tatcgacaag gacacgggaa agacaatcga cgttccatct ttaaagccag aagaatctgt + 4801 tactattcct tctgatacaa cttatgttgt tgccgtgttg aaagatgatg ctggtgttct + 4861 aaaggcaggt catgaaattg cctggggcca agctgaactt ccattgaagg tacccgattt + 4921 tgttacagag acagcagaaa aagctgcgaa gatcaacgac ggtaaacgtt atgtctcagt + 4981 tgaatccagt ggattgcatt ttatcttgga caaattgttg ggtaaaattg aaagcctaaa + 5041 ggtcaagggt aaggaaattt ccagcaagtt tgagggttct tcaatcactt tctggagacc + 5101 tccaacgaat aatgatgaac ctagggactt taagaactgg aagaagtaca atattgattt + 5161 aatgaagcaa aacatccatg gagtgagtgt cgaaaaaggt tctaatggtt ctctagctgt + 5221 agtcacggtt aactctcgta tatccccagt tgtattttac tatgggtttg agactgttca + 5281 gaagtacacg atctttgcta acaaaataaa cttgaacact tctatgaagc ttactggcga + 5341 atatcagcct cctgatttcc caagagttgg gtacgaattc tggctaggag atagttatga + 5401 atcatttgaa tggttaggtc gcgggcccgg cgaatcatat ccggataaga aggaatctca + 5461 aagattcggt ctttacgatt ccaaagatgt agaggaattc gtatatgact atcctcaaga + 5521 aaatggaaat catacagata cccacttttt gaacatcaaa tttgaaggtg caggaaaact + 5581 atcgatcttc caaaaggaga agccatttaa cttcaagatt tcagacgaat acggggttga + 5641 tgaagctgcc cacgcttgtg acgttaaaag atacggcaga cactatctaa ggttggacca + 5701 tgcaatccat ggtgttggta gcgaagcatg cggacctgct gttctggacc agtacagatt + 5761 gaaagctcaa gatttcaact ttgagtttga tctcgctttt gaataagaat tttatactta + 5821 gataagtatg tacttacagg tatatttcta tgagatactg atgtatacat gcatgataat + 5881 atttaaacgg ttattagtgc cgattgtctt gtgcgataat gacgttccta tcaaagcaat + 5941 acacttacca cctattacat gggccaagaa aatattttcg aacttgttta gaatattagc + 6001 acagagtata tgatgatatc cgttagatta tgcatgattc attcctacaa ctttttcgta + 6061 gcataaggat taattacttg gatgccaata aaaaaaaaaa acatcgagaa aatttcagca + 6121 tgctcagaaa caattgcagt gtatcaaagt aaaaaaaaga ttttcactac atgttccttt + 6181 tgaagaaaga aaatcatgga acattagatt tacaaaaatt taaccaccgc tgattaacga + 6241 ttagaccgtt aagcgcacaa caggttatta gtacagagaa agcattctgt ggtgttgccc + 6301 cggactttct tttgcgacat aggtaaatcg aataccatca tactatcttt tccaatgact + 6361 ccctaaagaa agactcttct tcgatgttg // diff --git a/tests/pUC_LAC4_correct_rotation.gb b/tests/pUC_LAC4_correct_rotation.gb index a6261e6c..97cd77ab 100644 --- a/tests/pUC_LAC4_correct_rotation.gb +++ b/tests/pUC_LAC4_correct_rotation.gb @@ -1,11 +1,11 @@ -LOCUS pUC_LAC4__copy_ 6389 bp ds-DNA circular 28-JAN-2014 +LOCUS pUC_LAC4__copy_ 6389 bp ds-DNA circular UNK 28-JAN-2014 DEFINITION Cloning vector pUC19c, complete sequence. -ACCESSION L09137 X02514 +ACCESSION L09137 VERSION L09137.2 GI:20141090 KEYWORDS . SOURCE Cloning vector pUC19c - ORGANISM Cloning vector pUC19c other sequences; _artificial_ sequences; - vectors. + ORGANISM Cloning vector pUC19c other sequences; _artificial_ sequences; v... + . REFERENCE 1 (bases 1 to 2686) AUTHORS Yanisch-Perron,C., Vieira,J. and Messing,J. TITLE Improved M13 phage cloning vectors and host strains: nucleotide @@ -14,8 +14,8 @@ REFERENCE 1 (bases 1 to 2686) PUBMED 2985470 REFERENCE 2 (bases 1 to 2686) AUTHORS Chambers,S.P., Prior,S.E., Barstow,D.A. and Minton,N.P. - TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions - to facilitate the use of sonicated DNA for nucleotide sequencing + TITLE The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to + facilitate the use of sonicated DNA for nucleotide sequencing JOURNAL Gene 68 (1), 139-149 (1988) PUBMED 2851488 REFERENCE 3 (bases 1 to 2686) @@ -30,8 +30,8 @@ REFERENCE 4 (bases 1 to 2686) REFERENCE 5 (bases 1 to 2686) AUTHORS Messing,J. TITLE Direct Submission - JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New - Jersey, Waksman Institute of Microbiology, 190 Frelinghuysen Road, + JOURNAL Submitted (11-APR-2002) Rutgers, The State University of New Jersey, + Waksman Institute of Microbiology, 190 Frelinghuysen Road, Piscataway, NJ 08854-8020, USA REMARK Sequence update by submitter COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These @@ -71,44 +71,44 @@ COMMENT On Apr 11, 2002 this sequence version replaced gi:209213. These HindIII-SphI-PstI-SalI-XbaI-BamHI-SmaI-KpnI-SacI-EcoRI SELECTION #resistance Ap #indicator beta-galactosidase SUMMARY pUC19c #length 2686 #checksum 4465. -COMMENT -COMMENT ApEinfo:methylated:1 + ApEinfo:methylated:1 + pydna cdseguid=3DOixhcqOZw67jiEHAYT6vay1wk 2024-06-11T18:27:57 FEATURES Location/Qualifiers source join(4118..6389,1..414) /organism="Cloning vector pUC19c" /mol_type="genomic DNA" /db_xref="taxon:174689" - /label=source:Cloning vector pUC19c - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Cloning vector pUC19c" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" source 415..4117 /organism="Kluyveromyces lactis" /mol_type="genomic DNA" /db_xref="taxon:28985" /tissue_lib="CBS2359" - /label=source:Kluyveromyces lactis - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="source:Kluyveromyces lactis" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" gene 423..3820 /gene="LAC4" - /label=LAC4 - /ApEinfo_fwdcolor=#ffc02c - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LAC4" + /ApEinfo_fwdcolor="#ffc02c" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" TATA_signal 423..426 /gene="LAC4" /note="putative" - /label=LAC4(1) - /ApEinfo_label=LAC4 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LAC4(1)" + /ApEinfo_label="LAC4" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" CDS 457..3534 /gene="LAC4" /EC_number="3.2.1.23" @@ -116,37 +116,37 @@ FEATURES Location/Qualifiers /product="beta-D-galactosidase" /protein_id="AAA35265.1" /db_xref="GI:173305" - /translation="MSCLIPENLRNPKKVHENRLPTRAYYYDQDIFESLNGPWAFALF - DAPLDAPDAKNLDWETAKKWSTISVPSHWELQEDWKYGKPIYTNVQYPIPIDIPNPPT - VNPTGVYARTFELDSKSIESFEHRLRFEGVDNCYELYVNGQYVGFNKGSRNGAEFDIQ - KYVSEGENLVVVKVFKWSDSTYIEDQDQWWLSGIYRDVSLLKLPKKAHIEDVRVTTTF - VDSQYQDAELSVKVDVQGSSYDHINFTLYEPEDGSKVYDASSLLNEENGNTTFSTKEF - ISFSTKKNEETAFKINVKAPEHWTAENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVE - LKDGNITVNGKDILFRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHYPN - HPKVYDLFDKLGFWVIDEADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDN - PEYEVAYLDRASQLVLRDVNHPSIIIWSLGNEACYGRNHKAMYKLIKQLDPTRLVHYE - GDLNALSADIFSFMYPTFEIMERWRKNHTDENGKFEKPLILCEYGHAMGNGPGSLKEY - QELFYKEKFYQGGFIWEWANHGIEFEDVSTADGKLHKAYAYGGDFKEEVHDGVFIMDG - LCNSEHNPTPGLVEYKKVIEPVHIKIAHGSVTITNKHDFITTDHLLFIDKDTGKTIDV - PSLKPEESVTIPSDTTYVVAVLKDDAGVLKAGHEIAWGQAELPLKVPDFVTETAEKAA - KINDGKRYVSVESSGLHFILDKLLGKIESLKVKGKEISSKFEGSSITFWRPPTNNDEP - RDFKNWKKYNIDLMKQNIHGVSVEKGSNGSLAVVTVNSRISPVVFYYGFETVQKYTIF - ANKINLNTSMKLTGEYQPPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFG - LYDSKDVEEFVYDYPQENGNHTDTHFLNIKFEGAGKLSIFQKEKPFNFKISDEYGVDE - AAHACDVKRYGRHYLRLDHAIHGVGSEACGPAVLDQYRLKAQDFNFEFDLAFE" - /label=beta-D-galactosidase - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /translation="MSCLIPENLRNPKKVHENRLPTRAYYYDQDIFESLNGPWAFALFD + APLDAPDAKNLDWETAKKWSTISVPSHWELQEDWKYGKPIYTNVQYPIPIDIPNPPTVN + PTGVYARTFELDSKSIESFEHRLRFEGVDNCYELYVNGQYVGFNKGSRNGAEFDIQKYV + SEGENLVVVKVFKWSDSTYIEDQDQWWLSGIYRDVSLLKLPKKAHIEDVRVTTTFVDSQ + YQDAELSVKVDVQGSSYDHINFTLYEPEDGSKVYDASSLLNEENGNTTFSTKEFISFST + KKNEETAFKINVKAPEHWTAENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVELKDGNI + TVNGKDILFRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSHYPNHPKVYDL + FDKLGFWVIDEADLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVAYL + DRASQLVLRDVNHPSIIIWSLGNEACYGRNHKAMYKLIKQLDPTRLVHYEGDLNALSAD + IFSFMYPTFEIMERWRKNHTDENGKFEKPLILCEYGHAMGNGPGSLKEYQELFYKEKFY + QGGFIWEWANHGIEFEDVSTADGKLHKAYAYGGDFKEEVHDGVFIMDGLCNSEHNPTPG + LVEYKKVIEPVHIKIAHGSVTITNKHDFITTDHLLFIDKDTGKTIDVPSLKPEESVTIP + SDTTYVVAVLKDDAGVLKAGHEIAWGQAELPLKVPDFVTETAEKAAKINDGKRYVSVES + SGLHFILDKLLGKIESLKVKGKEISSKFEGSSITFWRPPTNNDEPRDFKNWKKYNIDLM + KQNIHGVSVEKGSNGSLAVVTVNSRISPVVFYYGFETVQKYTIFANKINLNTSMKLTGE + YQPPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFGLYDSKDVEEFVYDYPQ + ENGNHTDTHFLNIKFEGAGKLSIFQKEKPFNFKISDEYGVDEAAHACDVKRYGRHYLRL + DHAIHGVGSEACGPAVLDQYRLKAQDFNFEFDLAFE" + /label="beta-D-galactosidase" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" polyA_signal 3815..3820 /gene="LAC4" - /label=LAC4(2) - /ApEinfo_label=LAC4 - /ApEinfo_fwdcolor=pink - /ApEinfo_revcolor=pink - /ApEinfo_graphicformat=arrow_data {{0 1 2 0 0 -1} {} 0} - width 5 offset 0 + /label="LAC4(2)" + /ApEinfo_label="LAC4" + /ApEinfo_fwdcolor="pink" + /ApEinfo_revcolor="pink" + /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} + width 5 offset 0" ORIGIN 1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca 61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg @@ -154,69 +154,69 @@ ORIGIN 181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc 241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat 301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt - 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccAAAAAA - 421 AAAATAAACA CACATACTCA TCGAGAACTG AAAGATATGT CTTGCCTTAT TCCTGAGAAT - 481 TTAAGGAACC CCAAAAAGGT TCACGAAAAT AGATTGCCTA CTAGGGCTTA CTACTATGAT - 541 CAGGATATTT TCGAATCTCT CAATGGGCCT TGGGCTTTTG CGTTGTTTGA TGCACCTCTT - 601 GACGCTCCGG ATGCTAAGAA TTTAGACTGG GAAACGGCAA AGAAATGGAG CACCATTTCT - 661 GTGCCATCCC ATTGGGAACT TCAGGAAGAC TGGAAGTACG GTAAACCAAT TTACACGAAC - 721 GTACAGTACC CTATCCCAAT CGACATCCCA AATCCTCCCA CTGTAAATCC TACTGGTGTT - 781 TATGCTAGAA CTTTTGAATT AGATTCGAAA TCGATTGAGT CGTTCGAGCA CAGATTGAGA - 841 TTTGAGGGTG TGGACAATTG TTACGAGCTT TATGTTAATG GTCAATATGT GGGTTTCAAT - 901 AAGGGGTCCC GTAACGGGGC TGAATTTGAT ATCCAAAAGT ACGTTTCTGA GGGCGAAAAC - 961 TTAGTGGTCG TCAAGGTTTT CAAGTGGTCC GATTCCACTT ATATCGAGGA CCAAGATCAA - 1021 TGGTGGCTCT CTGGTATTTA CAGAGACGTT TCTTTACTAA AATTGCCTAA GAAGGCCCAT - 1081 ATTGAAGACG TTAGGGTCAC TACAACTTTT GTGGACTCTC AGTATCAGGA TGCAGAGCTT - 1141 TCTGTGAAAG TTGATGTCCA GGGTTCTTCT TATGATCACA TCAATTTCAC ACTTTACGAA - 1201 CCTGAAGATG GATCTAAAGT TTACGATGCA AGCTCTTTGT TGAACGAGGA GAATGGGAAC - 1261 ACGACTTTTT CAACTAAAGA ATTTATTTCC TTCTCCACCA AAAAGAACGA AGAAACAGCT - 1321 TTCAAGATCA ACGTCAAGGC CCCAGAACAT TGGACCGCAG AAAATCCTAC TTTGTACAAG - 1381 TACCAGTTGG ATTTAATTGG ATCTGATGGC AGTGTGATTC AATCTATTAA GCACCATGTT - 1441 GGTTTCAGAC AAGTGGAGTT GAAGGACGGT AACATTACTG TTAATGGCAA AGACATTCTC - 1501 TTTAGAGGTG TCAACAGACA TGATCACCAT CCAAGGTTCG GTAGAGCTGT GCCATTAGAT - 1561 TTTGTTGTTA GGGACTTGAT TCTAATGAAG AAGTTTAACA TCAATGCTGT TCGTAACTCG - 1621 CATTATCCAA ACCATCCTAA GGTGTATGAC CTCTTCGATA AGCTGGGCTT CTGGGTCATT - 1681 GACGAGGCAG ATCTTGAAAC TCATGGTGTT CAAGAGCCAT TTAATCGTCA TACGAACTTG - 1741 GAGGCTGAAT ATCCAGATAC TAAAAATAAA CTCTACGATG TTAATGCCCA TTACTTATCA - 1801 GATAATCCAG AGTACGAGGT CGCGTACTTA GACAGAGCTT CCCAACTTGT CCTAAGAGAT - 1861 GTCAATCATC CTTCGATTAT TATCTGGTCC TTGGGTAACG AAGCTTGTTA TGGCAGAAAC - 1921 CACAAAGCCA TGTACAAGTT AATTAAACAA TTGGATCCTA CCAGACTTGT GCATTATGAG - 1981 GGTGACTTGA ACGCTTTGAG TGCAGATATC TTTAGTTTCA TGTACCCAAC ATTTGAAATT - 2041 ATGGAAAGGT GGAGGAAGAA CCACACTGAT GAAAATGGTA AGTTTGAAAA GCCTTTGATC - 2101 TTGTGTGAGT ACGGCCATGC AATGGGTAAC GGTCCTGGCT CTTTGAAAGA ATATCAAGAG - 2161 TTGTTCTACA AGGAGAAGTT TTACCAAGGT GGCTTTATCT GGGAATGGGC AAATCACGGT - 2221 ATTGAATTCG AAGATGTTAG TACTGCAGAT GGTAAGTTGC ATAAAGCTTA TGCTTATGGT - 2281 GGTGACTTTA AGGAAGAGGT TCATGACGGA GTGTTCATCA TGGATGGTTT GTGTAACAGT - 2341 GAGCATAATC CTACTCCGGG CCTTGTAGAG TATAAGAAGG TTATTGAACC CGTTCATATT - 2401 AAAATTGCGC ACGGATCTGT AACAATCACA AATAAGCACG ACTTCATTAC GACAGACCAC - 2461 TTATTGTTTA TCGACAAGGA CACGGGAAAG ACAATCGACG TTCCATCTTT AAAGCCAGAA - 2521 GAATCTGTTA CTATTCCTTC TGATACAACT TATGTTGTTG CCGTGTTGAA AGATGATGCT - 2581 GGTGTTCTAA AGGCAGGTCA TGAAATTGCC TGGGGCCAAG CTGAACTTCC ATTGAAGGTA - 2641 CCCGATTTTG TTACAGAGAC AGCAGAAAAA GCTGCGAAGA TCAACGACGG TAAACGTTAT - 2701 GTCTCAGTTG AATCCAGTGG ATTGCATTTT ATCTTGGACA AATTGTTGGG TAAAATTGAA - 2761 AGCCTAAAGG TCAAGGGTAA GGAAATTTCC AGCAAGTTTG AGGGTTCTTC AATCACTTTC - 2821 TGGAGACCTC CAACGAATAA TGATGAACCT AGGGACTTTA AGAACTGGAA GAAGTACAAT - 2881 ATTGATTTAA TGAAGCAAAA CATCCATGGA GTGAGTGTCG AAAAAGGTTC TAATGGTTCT - 2941 CTAGCTGTAG TCACGGTTAA CTCTCGTATA TCCCCAGTTG TATTTTACTA TGGGTTTGAG - 3001 ACTGTTCAGA AGTACACGAT CTTTGCTAAC AAAATAAACT TGAACACTTC TATGAAGCTT - 3061 ACTGGCGAAT ATCAGCCTCC TGATTTCCCA AGAGTTGGGT ACGAATTCTG GCTAGGAGAT - 3121 AGTTATGAAT CATTTGAATG GTTAGGTCGC GGGCCCGGCG AATCATATCC GGATAAGAAG - 3181 GAATCTCAAA GATTCGGTCT TTACGATTCC AAAGATGTAG AGGAATTCGT ATATGACTAT - 3241 CCTCAAGAAA ATGGAAATCA TACAGATACC CACTTTTTGA ACATCAAATT TGAAGGTGCA - 3301 GGAAAACTAT CGATCTTCCA AAAGGAGAAG CCATTTAACT TCAAGATTTC AGACGAATAC - 3361 GGGGTTGATG AAGCTGCCCA CGCTTGTGAC GTTAAAAGAT ACGGCAGACA CTATCTAAGG - 3421 TTGGACCATG CAATCCATGG TGTTGGTAGC GAAGCATGCG GACCTGCTGT TCTGGACCAG - 3481 TACAGATTGA AAGCTCAAGA TTTCAACTTT GAGTTTGATC TCGCTTTTGA ATAAGAATTT - 3541 TATACTTAGA TAAGTATGTA CTTACAGGTA TATTTCTATG AGATACTGAT GTATACATGC - 3601 ATGATAATAT TTAAACGGTT ATTAGTGCCG ATTGTCTTGT GCGATAATGA CGTTCCTATC - 3661 AAAGCAATAC ACTTACCACC TATTACATGG GCCAAGAAAA TATTTTCGAA CTTGTTTAGA - 3721 ATATTAGCAC AGAGTATATG ATGATATCCG TTAGATTATG CATGATTCAT TCCTACAACT - 3781 TTTTCGTAGC ATAAGGATTA ATTACTTGGA TGCCAATAAA AAAAAAAAAC ATCGAGAAAA - 3841 TTTCAGCATG CTCAGAAACA ATTGCAGTGT ATCAAAGTAA AAAAAAGATT TTCACTACAT - 3901 GTTCCTTTTG AAGAAAGAAA ATCATGGAAC ATTAGATTTA CAAAAATTTA ACCACCGCTG - 3961 ATTAACGATT AGACCGTTAA GCGCACAACA GGTTATTAGT ACAGAGAAAG CATTCTGTGG - 4021 TGTTGCCCCG GACTTTCTTT TGCGACATAG GTAAATCGAA TACCATCATA CTATCTTTTC - 4081 CAATGACTCC CTAAAGAAAG ACTCTTCTTC GATGTTGggg gatcctctag agtcgacctg + 361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt cgagctcggt acccaaaaaa + 421 aaaataaaca cacatactca tcgagaactg aaagatatgt cttgccttat tcctgagaat + 481 ttaaggaacc ccaaaaaggt tcacgaaaat agattgccta ctagggctta ctactatgat + 541 caggatattt tcgaatctct caatgggcct tgggcttttg cgttgtttga tgcacctctt + 601 gacgctccgg atgctaagaa tttagactgg gaaacggcaa agaaatggag caccatttct + 661 gtgccatccc attgggaact tcaggaagac tggaagtacg gtaaaccaat ttacacgaac + 721 gtacagtacc ctatcccaat cgacatccca aatcctccca ctgtaaatcc tactggtgtt + 781 tatgctagaa cttttgaatt agattcgaaa tcgattgagt cgttcgagca cagattgaga + 841 tttgagggtg tggacaattg ttacgagctt tatgttaatg gtcaatatgt gggtttcaat + 901 aaggggtccc gtaacggggc tgaatttgat atccaaaagt acgtttctga gggcgaaaac + 961 ttagtggtcg tcaaggtttt caagtggtcc gattccactt atatcgagga ccaagatcaa + 1021 tggtggctct ctggtattta cagagacgtt tctttactaa aattgcctaa gaaggcccat + 1081 attgaagacg ttagggtcac tacaactttt gtggactctc agtatcagga tgcagagctt + 1141 tctgtgaaag ttgatgtcca gggttcttct tatgatcaca tcaatttcac actttacgaa + 1201 cctgaagatg gatctaaagt ttacgatgca agctctttgt tgaacgagga gaatgggaac + 1261 acgacttttt caactaaaga atttatttcc ttctccacca aaaagaacga agaaacagct + 1321 ttcaagatca acgtcaaggc cccagaacat tggaccgcag aaaatcctac tttgtacaag + 1381 taccagttgg atttaattgg atctgatggc agtgtgattc aatctattaa gcaccatgtt + 1441 ggtttcagac aagtggagtt gaaggacggt aacattactg ttaatggcaa agacattctc + 1501 tttagaggtg tcaacagaca tgatcaccat ccaaggttcg gtagagctgt gccattagat + 1561 tttgttgtta gggacttgat tctaatgaag aagtttaaca tcaatgctgt tcgtaactcg + 1621 cattatccaa accatcctaa ggtgtatgac ctcttcgata agctgggctt ctgggtcatt + 1681 gacgaggcag atcttgaaac tcatggtgtt caagagccat ttaatcgtca tacgaacttg + 1741 gaggctgaat atccagatac taaaaataaa ctctacgatg ttaatgccca ttacttatca + 1801 gataatccag agtacgaggt cgcgtactta gacagagctt cccaacttgt cctaagagat + 1861 gtcaatcatc cttcgattat tatctggtcc ttgggtaacg aagcttgtta tggcagaaac + 1921 cacaaagcca tgtacaagtt aattaaacaa ttggatccta ccagacttgt gcattatgag + 1981 ggtgacttga acgctttgag tgcagatatc tttagtttca tgtacccaac atttgaaatt + 2041 atggaaaggt ggaggaagaa ccacactgat gaaaatggta agtttgaaaa gcctttgatc + 2101 ttgtgtgagt acggccatgc aatgggtaac ggtcctggct ctttgaaaga atatcaagag + 2161 ttgttctaca aggagaagtt ttaccaaggt ggctttatct gggaatgggc aaatcacggt + 2221 attgaattcg aagatgttag tactgcagat ggtaagttgc ataaagctta tgcttatggt + 2281 ggtgacttta aggaagaggt tcatgacgga gtgttcatca tggatggttt gtgtaacagt + 2341 gagcataatc ctactccggg ccttgtagag tataagaagg ttattgaacc cgttcatatt + 2401 aaaattgcgc acggatctgt aacaatcaca aataagcacg acttcattac gacagaccac + 2461 ttattgttta tcgacaagga cacgggaaag acaatcgacg ttccatcttt aaagccagaa + 2521 gaatctgtta ctattccttc tgatacaact tatgttgttg ccgtgttgaa agatgatgct + 2581 ggtgttctaa aggcaggtca tgaaattgcc tggggccaag ctgaacttcc attgaaggta + 2641 cccgattttg ttacagagac agcagaaaaa gctgcgaaga tcaacgacgg taaacgttat + 2701 gtctcagttg aatccagtgg attgcatttt atcttggaca aattgttggg taaaattgaa + 2761 agcctaaagg tcaagggtaa ggaaatttcc agcaagtttg agggttcttc aatcactttc + 2821 tggagacctc caacgaataa tgatgaacct agggacttta agaactggaa gaagtacaat + 2881 attgatttaa tgaagcaaaa catccatgga gtgagtgtcg aaaaaggttc taatggttct + 2941 ctagctgtag tcacggttaa ctctcgtata tccccagttg tattttacta tgggtttgag + 3001 actgttcaga agtacacgat ctttgctaac aaaataaact tgaacacttc tatgaagctt + 3061 actggcgaat atcagcctcc tgatttccca agagttgggt acgaattctg gctaggagat + 3121 agttatgaat catttgaatg gttaggtcgc gggcccggcg aatcatatcc ggataagaag + 3181 gaatctcaaa gattcggtct ttacgattcc aaagatgtag aggaattcgt atatgactat + 3241 cctcaagaaa atggaaatca tacagatacc cactttttga acatcaaatt tgaaggtgca + 3301 ggaaaactat cgatcttcca aaaggagaag ccatttaact tcaagatttc agacgaatac + 3361 ggggttgatg aagctgccca cgcttgtgac gttaaaagat acggcagaca ctatctaagg + 3421 ttggaccatg caatccatgg tgttggtagc gaagcatgcg gacctgctgt tctggaccag + 3481 tacagattga aagctcaaga tttcaacttt gagtttgatc tcgcttttga ataagaattt + 3541 tatacttaga taagtatgta cttacaggta tatttctatg agatactgat gtatacatgc + 3601 atgataatat ttaaacggtt attagtgccg attgtcttgt gcgataatga cgttcctatc + 3661 aaagcaatac acttaccacc tattacatgg gccaagaaaa tattttcgaa cttgtttaga + 3721 atattagcac agagtatatg atgatatccg ttagattatg catgattcat tcctacaact + 3781 ttttcgtagc ataaggatta attacttgga tgccaataaa aaaaaaaaac atcgagaaaa + 3841 tttcagcatg ctcagaaaca attgcagtgt atcaaagtaa aaaaaagatt ttcactacat + 3901 gttccttttg aagaaagaaa atcatggaac attagattta caaaaattta accaccgctg + 3961 attaacgatt agaccgttaa gcgcacaaca ggttattagt acagagaaag cattctgtgg + 4021 tgttgccccg gactttcttt tgcgacatag gtaaatcgaa taccatcata ctatcttttc + 4081 caatgactcc ctaaagaaag actcttcttc gatgttgggg gatcctctag agtcgacctg 4141 caggcatgca agcttggcgt aatcatggtc atagctgttt cctgtgtgaa attgttatcc 4201 gctcacaatt ccacacaaca tacgagccgg aagcataaag tgtaaagcct ggggtgccta 4261 atgagtgagc taactcacat taattgcgtt gcgctcactg cccgctttcc agtcgggaaa diff --git a/tests/pYPK0_TDH3_GAL2_PGI1.gb b/tests/pYPK0_TDH3_GAL2_PGI1.gb index 42a77b8f..8d4bcfc2 100644 --- a/tests/pYPK0_TDH3_GAL2_PGI1.gb +++ b/tests/pYPK0_TDH3_GAL2_PGI1.gb @@ -4,9 +4,10 @@ DEFINITION pYPK0_TDH3_GAL2_PGI1 ACCESSION id VERSION id KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=iHpAg9I26WMob7spVI9X08JGw8I 2024-06-11T18:28:02 FEATURES Location/Qualifiers primer_bind 363..391 /label="577" diff --git a/tests/pYPKa.gb b/tests/pYPKa.gb index 583775f1..f6519996 100644 --- a/tests/pYPKa.gb +++ b/tests/pYPKa.gb @@ -1,12 +1,13 @@ LOCUS pYPKa 3128 bp DNA circular UNK 08-MAY-2015 DEFINITION Product_568_pCAPsAjiIR (22-mer)_567_pCAPsAjiIF (23-mer) - cSEGUID_aV1eIrzOiCjvw01yvKkxDXHKLMk_2015-05-08T16:41:28.034624 + cSEGUID_aV1eIrzOiCjvw01yvKkxDXHKLMk_2015-05-08T16:41:28.034624. ACCESSION 3128bp TmU_6uVdgKq5aQhTpHux7dVk9J8 VERSION 3128bp TmU_6uVdgKq5aQhTpHux7dVk9J8 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . +COMMENT pydna cdseguid=IFLMpKpCGZio0R0YkGSfqPaKKiw 2024-06-11T18:53:36 FEATURES Location/Qualifiers primer_bind complement(558..578) /note="567_pCAPsAjiIF" diff --git a/tests/pYPKp7.gb b/tests/pYPKp7.gb index 4f5bf3e9..4ac058d8 100644 --- a/tests/pYPKp7.gb +++ b/tests/pYPKp7.gb @@ -1,14 +1,14 @@ -LOCUS pYPKp7 6180 bp ds-DNA circular 21-MAY-2019 +LOCUS pYPKp7 6180 bp ds-DNA circular UNK 21-MAY-2019 DEFINITION Product_866_pYPKpwF (79-mer)_865_pYPKpwR (79-mer) - cSEGUID_w8zCE05nnVaKMSe-K0q29kjVt4k_2015-07-15T15:53:13.692687 + cSEGUID_w8zCE05nnVaKMSe-K0q29kjVt4k_2015-07-15T15:53:13.692687. ACCESSION 6180bp gCItH7lLRXLdK3XbHaL3u89TYD4 VERSION 6180bp gCItH7lLRXLdK3XbHaL3u89TYD4 KEYWORDS . -SOURCE . +SOURCE ORGANISM . . -COMMENT -COMMENT + . COMMENT ApEinfo:methylated:1 + pydna cdseguid=fmwzzI4AizvXzZufup73jSdZhvU 2024-06-11T18:53:14 FEATURES Location/Qualifiers primer_bind complement(458..486) /note="865_pYPKpwR" @@ -19,7 +19,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="red" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc complement(458..496) /locus_tag="865_pYPKpwR(1)" /label="865_pYPKpwR(1)" @@ -28,7 +28,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc 497..535 /locus_tag="866_pYPKpwF" /label="866_pYPKpwF" @@ -37,7 +37,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" primer_bind 506..535 /note="866_pYPKpwF" /locus_tag="866_pYPKpwF(1)" @@ -47,7 +47,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="red" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" rep_origin complement(1136..1817) /locus_tag="ColE1 origin" /label="ColE1 origin" @@ -56,7 +56,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" overlap 1793..1819 /note="olp_Vz6HNwLIswTkTlL2QRfRTpiuAPM" /chksum="Vz6HNwLIswTkTlL2QRfRTpiuAPM" @@ -67,7 +67,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="#CCB1C7" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" primer_bind 1820..1848 /note="678_pYPK0_hygfwd:" /locus_tag="678_pYPK0_hygfwd:" @@ -77,7 +77,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc_feature 1897..1930 /note="loxP site" /locus_tag="loxP site" @@ -87,7 +87,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" regulatory 1931..2328 /note="from TEF" /regulatory_class="promoter" @@ -98,7 +98,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" gene 2329..3138 /gene="kanMX" /locus_tag="kanMX" @@ -108,20 +108,17 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" CDS 2329..3138 /product="geneticin resistance protein" /codon_start=1 /transl_table=11 /db_xref="GI:11344910" - /translation="MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGK - P - DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKT - A - FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDAS - D - FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA - D RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" + /translation="MGKEKTHVSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP + DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA + FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD + FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD + RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF" /gene="kanMX" /protein_id="AAG34543.1" /locus_tag="geneticin resistance protein" @@ -131,7 +128,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" regulatory 3139..3403 /note="from TEF" /regulatory_class="terminator" @@ -142,7 +139,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc_feature 3404..3437 /note="loxP site" /locus_tag="loxP site(1)" @@ -152,7 +149,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" primer_bind complement(3485..3504) /note="666_pYPK0_hygrev" /locus_tag="666_pYPK0_hygrev" @@ -162,7 +159,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="red" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc complement(3485..3533) /locus_tag="666_pYPK0_hygrev(1)" /label="666_pYPK0_hygrev(1)" @@ -171,7 +168,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="pink" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" overlap 3505..3533 /note="olp_qy6sz9DB3IIP_DoA7rrIe_OyxR8" /chksum="qy6sz9DB3IIP_DoA7rrIe_OyxR8" @@ -182,7 +179,7 @@ FEATURES Location/Qualifiers /ApEinfo_revcolor="#D2B7F7" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" - /ApEinfo_hidden + /ApEinfo_hidden="" misc_feature 1..486 /locus_tag="486" /label="486" diff --git a/tests/test_longerlocus_name_gives_dseq.py b/tests/test_longerlocus_name_gives_dseq.py index 1c3c0e64..34eceb90 100644 --- a/tests/test_longerlocus_name_gives_dseq.py +++ b/tests/test_longerlocus_name_gives_dseq.py @@ -1,9 +1,15 @@ # -*- coding: utf-8 -*- + +import pytest from pydna.readers import read def test_longername_gives_deseq(): - myseq = read(open("./broken_genbank_files/pGreenLantern1.gb", "r").read()) + myseq = read(open("broken_genbank_files/pGreenLantern1.gb", "r").read()) assert myseq.circular - myseq = read(open("./broken_genbank_files/fakeGenBankFile.gb", "r").read()) + myseq = read(open("broken_genbank_files/fakeGenBankFile.gb", "r").read()) assert myseq.circular + + +if __name__ == "__main__": + pytest.main([__file__, "-x", "-vvv", "-s"]) diff --git a/tests/test_module_amplify.py b/tests/test_module_amplify.py index ea3d2696..eeb4d895 100644 --- a/tests/test_module_amplify.py +++ b/tests/test_module_amplify.py @@ -12,11 +12,12 @@ def test_set_primer_footprint(): f, r = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -35,11 +36,12 @@ def test_set_primer_footprint(): def test_string_arguments(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -55,11 +57,12 @@ def test_Seq_arguments(): from Bio.Seq import Seq f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -75,11 +78,12 @@ def test_Dseq_arguments(): from pydna.dseq import Dseq f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -98,11 +102,12 @@ def test_wrong_argument_type(): def test_no_primers_anneal(): f0, r0 = parse_primers( - """>ForwardPrimer - gctacta + """ + >ForwardPrimer + gctacta - >ReversePrimer - tgtggtt""" + >ReversePrimer + tgtggtt""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -117,11 +122,12 @@ def test_no_primers_anneal(): def test_no_fwdprimer_anneal(): f0, r0 = parse_primers( - """>ForwardPrimer - gctact + """ + >ForwardPrimer + gctact - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -136,11 +142,12 @@ def test_no_fwdprimer_anneal(): def test_no_revprimer_anneal(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggtt""" + >ReversePrimer + tgtggtt""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -155,11 +162,12 @@ def test_no_revprimer_anneal(): def test_Primer_arguments(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -173,11 +181,12 @@ def test_Primer_arguments(): def test_feature_label(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -192,11 +201,12 @@ def test_feature_label(): def test_feature_note(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -215,11 +225,12 @@ def test_feature_note(): def test_Amplicon_argument(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -239,11 +250,12 @@ def test_Amplicon_argument(): def test_pcr_not_specific(): f0, r0 = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t0 = Dseqrecord("gctactacacacgtactgactgtgctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -258,11 +270,12 @@ def test_pcr_not_specific(): def test_too_short_primers(): f, r = parse_primers( - """>ForwardPrimer - gctactacacacgtactgactg + """ + >ForwardPrimer + gctactacacacgtactgactg - >ReversePrimer - tgtggttactgactctatcttg""" + >ReversePrimer + tgtggttactgactctatcttg""" ) t = Dseqrecord("gctactacacacgtactgactgcctccaagatagagtcagtaaccaca") @@ -601,13 +614,12 @@ def test_pcr(): ) for key, tst in enumerate(raw): - #print(tst[0], pcr(tst[1:]).seguid(), tst[0] in pcr(tst[1:]).seguid()) + # print(tst[0], pcr(tst[1:]).seguid(), tst[0] in pcr(tst[1:]).seguid()) assert tst[0] in pcr(tst[1:]).seguid() def test_shifts(): from pydna.parsers import parse - from pydna.parsers import parse_primers from pydna.amplify import pcr # from pydna.amplify import nopcr @@ -769,5 +781,24 @@ def test_shifts(): f = pcr(f, r, t) +def test_annotation(): + """ + Test that annotations are correctly added to the amplicon in primers with tails + https://github.com/BjornFJohansson/pydna/issues/279 + """ + from pydna.amplify import pcr + from pydna.dseqrecord import Dseqrecord + + dsr = Dseqrecord("ATGCAAACAGTAATGATGGATGACATTCAAAGCACTGATTCTATTGCTGAAAAAGATAAT") + dsr.add_feature(x=0, y=60, type="gene", label="my_gene") # We add a feature to highlight the sequence as a gene + + forward_primer = "ccccggatccATGCAAACAGTAATGATGGA" + reverse_primer = "ttttggatccATTATCTTTTTCAGCAATAGAATCA" + + pcr_product = pcr(forward_primer, reverse_primer, dsr) + + assert pcr_product.features[0].location.extract(pcr_product).seq == dsr.seq + + if __name__ == "__main__": pytest.main([__file__, "-vv", "-s"]) diff --git a/tests/test_module_crispr.py b/tests/test_module_crispr.py index 62349323..94d8389c 100644 --- a/tests/test_module_crispr.py +++ b/tests/test_module_crispr.py @@ -23,17 +23,26 @@ def test_crispr(): """ ) - containing_sgRNA = Dseqrecord("GTTACTTTACCCGACGTCCCgttttagagctagaaatagcaagttaaaataagg") - target = Dseqrecord("GTTACTTTACCCGACGTCCCaGG") - assert [f.seq for f in target.cut([cas9(ps) for ps in protospacer(containing_sgRNA)])] == [a, b] - assert [f.seq for f in target.cut([cas9(ps) for ps in protospacer(containing_sgRNA.rc())])] == [a, b] - assert [f.seq for f in target.rc().cut([cas9(ps) for ps in protospacer(containing_sgRNA)])] == [b.rc(), a.rc()] - assert [f.seq for f in target.rc().cut([cas9(ps) for ps in protospacer(containing_sgRNA.rc())])] == [ - b.rc(), - a.rc(), - ] + sgr_text = "GTTACTTTACCCGACGTCCCgttttagagctagaaatagcaagttaaaataagg" + target = "GTTACTTTACCCGACGTCCCaGG" + + for sg, tgt in [(sgr_text, target), + (sgr_text.upper(), target.lower()), + (sgr_text.lower(), target.upper())]: + containing_sgRNA = Dseqrecord(sgr_text) + target = Dseqrecord(target) + + assert [f.seq for f in target.cut([cas9(ps) for ps in protospacer(containing_sgRNA)])] == [a, b] + assert [f.seq for f in target.cut([cas9(ps) for ps in protospacer(containing_sgRNA.rc())])] == [a, b] + assert [f.seq for f in target.rc().cut([cas9(ps) for ps in protospacer(containing_sgRNA)])] == [b.rc(), a.rc()] + assert [f.seq for f in target.rc().cut([cas9(ps) for ps in protospacer(containing_sgRNA.rc())])] == [ + b.rc(), + a.rc(), + ] + + assert target.cut(cas9("GTTACTTTACCCGACGTCCC")) == target.cut(cas9("GTTACTTTACCCGACGTCCC".lower())) if __name__ == "__main__": diff --git a/tests/test_module_design.py b/tests/test_module_design.py index 28e7039b..9c993fce 100755 --- a/tests/test_module_design.py +++ b/tests/test_module_design.py @@ -220,24 +220,24 @@ def test_primer_Design_with_linker(): """test_primer_design""" b = Dseqrecord("agctactgactattaggggttattctgatcatctgatctactatctgactgtactgatcta") - l = Dseqrecord("AAATTTCCCGGG") + linker = Dseqrecord("AAATTTCCCGGG") c = Dseqrecord("tctgatctactatctgactgtactgatctattgacactgtgatcattctagtgtattactc") - frags = assembly_fragments((primer_design(b), l, primer_design(c))) + frags = assembly_fragments((primer_design(b), linker, primer_design(c))) asm1 = Assembly(frags) - assert asm1.assemble_linear()[0].seguid(), (b + l + c).seguid() == "l95igKB8iKAKrvvqE9CYksyNx40" + assert asm1.assemble_linear()[0].seguid(), (b + linker + c).seguid() == "l95igKB8iKAKrvvqE9CYksyNx40" - frags = assembly_fragments((primer_design(b), l, primer_design(c), primer_design(b))) + frags = assembly_fragments((primer_design(b), linker, primer_design(c), primer_design(b))) b2 = pcr(frags[-1].forward_primer, frags[0].reverse_primer, b) asm2 = Assembly((b2, frags[1], frags[2])) - assert (b + l + c).looped().seguid() == asm2.assemble_circular()[0].seguid() + assert (b + linker + c).looped().seguid() == asm2.assemble_circular()[0].seguid() - assert (b + l + c).looped().seguid() == "cdseguid=LqQ1_uMp2AmEZ_L2I1_njIMkVDc" + assert (b + linker + c).looped().seguid() == "cdseguid=LqQ1_uMp2AmEZ_L2I1_njIMkVDc" def test_primer_Design_given_fw_primer(): @@ -275,7 +275,7 @@ def test_primer_Design_multiple_products(): from pydna import _PydnaWarning with pytest.warns(_PydnaWarning): - a = primer_design(b) + primer_design(b) def test_circular_assembly_fragments(): @@ -309,5 +309,64 @@ def test_too_short_template(): assert primer_design(fragment) == Amplicon("") +def test_get_tm_and_primer_from_above_and_below(): + """Starting from higher and lower lengths gives the same value""" + from pydna.design import _design_primer + from pydna.tm import tm_default + + for f in frags: + for temp in [40, 45, 50, 55]: + assert _design_primer(temp, f, 13, tm_default) == _design_primer(temp, f, 13, tm_default, 40) + + +def test_use_estimate_function(): + from pydna.design import primer_design + from pydna.tm import tm_default + + def tm_alt_lower(*args): + return tm_default(*args) - 10 + + def tm_alt_upper(*args): + return tm_default(*args) + 10 + + for f in frags: + for temp in [40, 45, 50, 55]: + amp_lower_with_estimate = primer_design( + f, target_tm=temp, tm_func=tm_alt_lower, estimate_function=tm_default + ) + amp_lower_no_estimate = primer_design(f, target_tm=temp, tm_func=tm_alt_lower) + + assert amp_lower_with_estimate == amp_lower_no_estimate + + amp_upper_with_estimate = primer_design( + f, target_tm=temp, tm_func=tm_alt_upper, estimate_function=tm_default + ) + amp_upper_no_estimate = primer_design(f, target_tm=temp, tm_func=tm_alt_upper) + + assert amp_upper_with_estimate == amp_upper_no_estimate + + +def test_primer_design_correct_value(): + from pydna.tm import tm_default + + for original_target_tm in range(60, 65): + for frag in frags: + amp = primer_design(frag, target_tm=original_target_tm, limit=15) + fwd, rvs = amp.primers() + possible_fwd = [Primer(frag[0:i].seq) for i in range(15, 40)] + possible_rvs = [Primer(frag[-i:].reverse_complement().seq) for i in range(15, 40)] + + # Finds the closest forward primer + fwd_diff = [abs(tm_default(f.seq) - original_target_tm) for f in possible_fwd] + correct_fwd = possible_fwd[fwd_diff.index(min(fwd_diff))] + assert str(fwd.seq) == str(correct_fwd.seq) + + # Uses that primers Tm as the target Tm for the reverse primer + new_target_tm = tm_default(correct_fwd.seq) + rvs_diff = [abs(tm_default(f.seq) - new_target_tm) for f in possible_rvs] + correct_rvs = possible_rvs[rvs_diff.index(min(rvs_diff))] + assert str(rvs.seq) == str(correct_rvs.seq) + + if __name__ == "__main__": pytest.cmdline.main([__file__, "-v", "-s"]) diff --git a/tests/test_module_dseq.py b/tests/test_module_dseq.py index 315e4aa8..aaf8e2a2 100644 --- a/tests/test_module_dseq.py +++ b/tests/test_module_dseq.py @@ -719,6 +719,19 @@ def test_shifted(): assert a.shifted(0) is not a +def test_looped(): + + # Looping a circular sequence should return a copy of the sequence + # not the same sequence + + from pydna.dseq import Dseq + + a = Dseq("gatc", circular=True) + + assert a.looped() == a + assert a.looped() is not a + + def test_misc(): from pydna.dseq import Dseq @@ -827,8 +840,9 @@ def test_left_end_position(): def test_apply_cut(): from pydna.dseq import Dseq + from Bio.Restriction import EcoRI, BamHI - seq = Dseq('aaGAATTCaa', circular=False) + seq = Dseq("aaGAATTCaa", circular=False) # A cut where both sides are None returns the same sequence assert seq.apply_cut(None, None) == seq @@ -837,62 +851,62 @@ def test_apply_cut(): EcoRI_cut = ((3, -4), None) assert seq.apply_cut(None, EcoRI_cut) == Dseq.from_full_sequence_and_overhangs( - 'aaGAATT', watson_ovhg=-4, crick_ovhg=0 + "aaGAATT", watson_ovhg=-4, crick_ovhg=0 ) assert seq.apply_cut(EcoRI_cut, None) == Dseq.from_full_sequence_and_overhangs( - 'AATTCaa', watson_ovhg=0, crick_ovhg=-4 + "AATTCaa", watson_ovhg=0, crick_ovhg=-4 ) # It respects the original overhang - seq = Dseq.from_full_sequence_and_overhangs('aaGAATTCaa', watson_ovhg=1, crick_ovhg=1) + seq = Dseq.from_full_sequence_and_overhangs("aaGAATTCaa", watson_ovhg=1, crick_ovhg=1) assert seq.apply_cut(None, EcoRI_cut) == Dseq.from_full_sequence_and_overhangs( - 'aaGAATT', watson_ovhg=-4, crick_ovhg=1 + "aaGAATT", watson_ovhg=-4, crick_ovhg=1 ) assert seq.apply_cut(EcoRI_cut, None) == Dseq.from_full_sequence_and_overhangs( - 'AATTCaa', watson_ovhg=1, crick_ovhg=-4 + "AATTCaa", watson_ovhg=1, crick_ovhg=-4 ) - seq = Dseq.from_full_sequence_and_overhangs('aaGAATTCaa', watson_ovhg=-1, crick_ovhg=-1) + seq = Dseq.from_full_sequence_and_overhangs("aaGAATTCaa", watson_ovhg=-1, crick_ovhg=-1) assert seq.apply_cut(None, EcoRI_cut) == Dseq.from_full_sequence_and_overhangs( - 'aaGAATT', watson_ovhg=-4, crick_ovhg=-1 + "aaGAATT", watson_ovhg=-4, crick_ovhg=-1 ) assert seq.apply_cut(EcoRI_cut, None) == Dseq.from_full_sequence_and_overhangs( - 'AATTCaa', watson_ovhg=-1, crick_ovhg=-4 + "AATTCaa", watson_ovhg=-1, crick_ovhg=-4 ) # A repeated cut in a circular molecule opens it up - seq = Dseq('aaGAATTCaa', circular=True) + seq = Dseq("aaGAATTCaa", circular=True) assert seq.apply_cut(EcoRI_cut, EcoRI_cut) == Dseq.from_full_sequence_and_overhangs( - 'AATTCaaaaGAATT', watson_ovhg=-4, crick_ovhg=-4 + "AATTCaaaaGAATT", watson_ovhg=-4, crick_ovhg=-4 ) # Two cuts extract a subsequence - seq = Dseq('aaGAATTCaaGAATTCaa', circular=True) + seq = Dseq("aaGAATTCaaGAATTCaa", circular=True) EcoRI_cut_2 = ((11, -4), None) assert seq.apply_cut(EcoRI_cut, EcoRI_cut_2) == Dseq.from_full_sequence_and_overhangs( - 'AATTCaaGAATT', watson_ovhg=-4, crick_ovhg=-4 + "AATTCaaGAATT", watson_ovhg=-4, crick_ovhg=-4 ) # Overlapping cuts should return an error - seq = Dseq('aaGAATTCaa', circular=True) + seq = Dseq("aaGAATTCaa", circular=True) first_cuts = [ - ((3, -4), None), - ((7, 4), None), + ((3, -4), BamHI), + ((7, 4), BamHI), # Spanning the origin - ((9, -8), None), - ((8, 8), None), + ((9, -8), BamHI), + ((8, 8), BamHI), ] overlapping_cuts = [ - ((4, -4), None), - ((2, -4), None), - ((2, -6), None), - ((8, 4), None), - ((6, 4), None), - ((8, 6), None), + ((4, -4), EcoRI), + ((2, -4), EcoRI), + ((2, -6), EcoRI), + ((8, 4), EcoRI), + ((6, 4), EcoRI), + ((8, 6), EcoRI), # Spanning the origin - ((7, -8), None), - ((6, 8), None), + ((7, -8), EcoRI), + ((6, 8), EcoRI), ] for first_cut in first_cuts: @@ -900,13 +914,13 @@ def test_apply_cut(): try: seq.apply_cut(first_cut, second_cut) except ValueError as e: - assert e.args[0] == 'Cuts overlap' + assert e.args[0] == "Cuts by BamHI EcoRI overlap." else: print(first_cut, second_cut) - assert False, 'Expected ValueError' + assert False, "Expected ValueError" # Rotating the sequence, apply the same cut - seq = Dseq('acgtATGaatt', circular=True) + seq = Dseq("acgtATGaatt", circular=True) for shift in range(len(seq)): seq_shifted = seq.shifted(shift) start = 4 - shift @@ -915,19 +929,19 @@ def test_apply_cut(): # Cut with negative ovhg new_cut = ((start, -3), None) out = seq_shifted.apply_cut(new_cut, new_cut) - assert str(out) == 'ATGaattacgtATG' + assert str(out) == "ATGaattacgtATG" # Cut with positive ovhg start = (start + 3) % len(seq) new_cut = ((start, 3), None) out = seq_shifted.apply_cut(new_cut, new_cut) - assert str(out) == 'ATGaattacgtATG' + assert str(out) == "ATGaattacgtATG" # A blunt cut start = 4 - shift new_cut = ((start, 0), None) out = seq_shifted.apply_cut(new_cut, new_cut) - assert str(out) == 'ATGaattacgt' + assert str(out) == "ATGaattacgt" def test_cutsite_is_valid(): @@ -963,7 +977,7 @@ def test_cutsite_is_valid(): assert len(dseq.get_cutsites([enz])) == 1 # Special cases: - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 0, 0) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 0, 0) assert len(dseq.get_cutsites([NmeDI])) == 2 # Remove left cutting place assert len(dseq[2:].get_cutsites([NmeDI])) == 1 @@ -973,27 +987,27 @@ def test_cutsite_is_valid(): assert len(dseq[2:-2].get_cutsites([NmeDI])) == 0 # overhang left side - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', -2, 0) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", -2, 0) assert len(dseq.get_cutsites([NmeDI])) == 1 - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 2, 0) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 2, 0) assert len(dseq.get_cutsites([NmeDI])) == 1 # overhang right side - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 0, 2) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 0, 2) assert len(dseq.get_cutsites([NmeDI])) == 1 - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 0, -2) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 0, -2) assert len(dseq.get_cutsites([NmeDI])) == 1 # overhang both sides - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 2, 2) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 2, 2) assert len(dseq.get_cutsites([NmeDI])) == 0 - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', -2, -2) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", -2, -2) assert len(dseq.get_cutsites([NmeDI])) == 0 # overhang on recognition site removes both cutting places - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 16, 0) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 16, 0) assert len(dseq.get_cutsites([NmeDI])) == 0 - dseq = Dseq.from_full_sequence_and_overhangs('AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA', 0, 16) + dseq = Dseq.from_full_sequence_and_overhangs("AAAAAAAAAAAAAGCCGGCAAAAAAAAAAAA", 0, 16) assert len(dseq.get_cutsites([NmeDI])) == 0 @@ -1002,7 +1016,7 @@ def test_get_cutsite_pairs(): # in the test, we replace cuts by integers for clarity. - dseq = Dseq('A') + dseq = Dseq("A") # Empty returns empty list assert dseq.get_cutsite_pairs([]) == [] @@ -1013,7 +1027,7 @@ def test_get_cutsite_pairs(): # Two cuts on linear seq return three fragments assert dseq.get_cutsite_pairs([1, 2]) == [(None, 1), (1, 2), (2, None)] - dseq = Dseq('A', circular=True) + dseq = Dseq("A", circular=True) # Empty returns empty list assert dseq.get_cutsite_pairs([]) == [] @@ -1029,7 +1043,7 @@ def test_get_cut_parameters(): from pydna.dseq import Dseq - dseq = Dseq.from_full_sequence_and_overhangs('aaaACGTaaa', 3, 3) + dseq = Dseq.from_full_sequence_and_overhangs("aaaACGTaaa", 3, 3) assert dseq.get_cut_parameters(None, True) == (*dseq.left_end_position(), dseq.ovhg) assert dseq.get_cut_parameters(None, False) == (*dseq.right_end_position(), dseq.watson_ovhg()) @@ -1038,22 +1052,22 @@ def test_get_cut_parameters(): assert dseq.get_cut_parameters(((6, 2), None), True) == (6, 4, 2) assert dseq.get_cut_parameters(((6, 2), None), False) == (6, 4, 2) - dseq = Dseq('aaaACGTaaa', circular=True) + dseq = Dseq("aaaACGTaaa", circular=True) # None cannot be used on circular molecules try: assert dseq.get_cut_parameters(None, True) == (*dseq.left_end_position(), dseq.ovhg) except AssertionError as e: - assert e.args[0] == 'Circular sequences should not have None cuts' + assert e.args[0] == "Circular sequences should not have None cuts" else: - assert False, 'Expected AssertionError' + assert False, "Expected AssertionError" try: assert dseq.get_cut_parameters(None, False) == (*dseq.right_end_position(), dseq.watson_ovhg()) except AssertionError as e: - assert e.args[0] == 'Circular sequences should not have None cuts' + assert e.args[0] == "Circular sequences should not have None cuts" else: - assert False, 'Expected AssertionError' + assert False, "Expected AssertionError" # "Normal" cuts assert dseq.get_cut_parameters(((4, -2), None), True) == (4, 6, -2) diff --git a/tests/test_module_dseqrecord.py b/tests/test_module_dseqrecord.py index 40ed09ab..6cf61f11 100644 --- a/tests/test_module_dseqrecord.py +++ b/tests/test_module_dseqrecord.py @@ -8,9 +8,18 @@ def test_orfs(): from pydna.dseqrecord import Dseqrecord - s = Dseqrecord("atgaaattttaa") + s = Dseqrecord("AatgaaataaT") - assert s.orfs(2) == (s,) + assert s.orfs(9)[0].seq == s.seq[1:-1] + assert s.orfs(10) == tuple() + + s = Dseqrecord( + "tctgcaataATGGGTAATGAAATCGATGAGAAAAATCAGGCCCCCGTGCAACAAGAATGCCTGAAAGAGATGATTCAGAATGGGCATGCTCGGCGTATGGGATCTGTTGAAGATCTGTATGTTGCTCTCAACAGACAAAACTTATATCGAAACTTCTGCACATATGGAGAATTGAGTGATTACTGTACTAGGGATCAGCTCACATTAGCTTTGAGGGAAATCTGCCTGAAAAATCCAACTCTTTTACATATTGTTCTACCAACAAGATGGCCAAATCATGAAAATTATTATCGCAGTTCCGAATACTATTCACGGCCACATCCAGTGCATGATTATATTTCAGTATTACAAGAATTGAAACTGAGTGGTGTGGTTCTCAATGAACAACCTGAGTACAGTGCAGTAATGAAGCAAATATTAGAAGAATTCAAAAATAGTAAGGGTTCCTATACTGCAAAAATTTTTAAACTTACTACCACTTTGACTATTCCTTACTTTGGACCAACAGGACCGAGTTGGCGGCTAATTTGTCTTCCAGAAGAGCACACAGAAAAGTGGAAAAAATTTATCTTTGTATCTAATCATTGCATGTCTGATGGTCGGTCTTCGATCCACTTTTTTCATGATTTAAGAGACGAATTAAATAATATTAAAACTCCACCAAAAAAATTAGATTACATTTTCAAGTACGAGGAGGATTACCAATTATTGAGGAAACTTCCAGAACCGATCGAAAAGGTGATAGACTTTAGACCACCGTACTTGTTTATTCCGAAGTCACTTCTTTCGGGTTTCATCTACAATCATTTGAGATTTTCTTCAAAAGGTGTCTGTATGAGAATGGATGATGTGGAAAAAACCGATGATGTTGTCACCGAGATCATCAATATTTCACCAACAGAATTTCAAGCGATTAAAGCAAATATTAAATCAAATATCCAAGGTAAGTGTACTATCACTCCGTTTTTACATGTTTGTTGGTTTGTATCTCTTCATAAATGGGGTAAATTTTTCAAACCATTGAACTTCGAATGGCTTACGGATATTTTTATCCCCGCAGATTGCCGCTCACAACTACCAGATGATGATGAAATGAGACAGATGTACAGATATGGCGCTAACGTTGGATTTATTGACTTCACCCCCTGGATAAGCGAATTTGACATGAATGATAACAAAGAAAATTTTTGGCCACTTATTGAGCACTACCATGAAGTAATTTCGGAAGCTTTAAGAAATAAAAAGCATCTCCATGGCTTAGGGTTCAATATACAAGGCTTCGTTCAAAAATATGTGAACATTGACAAGGTAATGTGCGATCGTGCCATCGGGAAAAGACGCGGAGGTACATTGTTAAGCAATGTAGGTCTGTTTAATCAGTTAGAGGAGCCCGATGCCAAATATTCTATATGCGATTTGGCATTTGGCCAATTTCAAGGATCCTGGCACCAAGCATTTTCCTTGGGTGTTTGTTCGACTAATGTAAAGGGGATGAATATTGTTGTTGCTTCAACAAAGAATGTTGTTGGTAGTCAAGAATCTCTCGAAGAGCTTTGCTCCATTTACAAAGCTCTCCTTTTAGGCCCTTAA" + ) + + lens = (1581, 1521, 1494, 1185, 1002) + for orf, ln in zip(s.orfs(1002), lens): + assert len(orf) == ln def test_cas9(): @@ -426,6 +435,15 @@ def test_format(): s = Dseqrecord("GGATCC", circular=False) s.format("fasta") + # A long sequence name is properly handled + s.name = "A" * 45 + genbank_str = s.format("genbank") + locus_line = genbank_str.split("\n")[0] + assert ( + locus_line + == "LOCUS AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6 bp DNA linear UNK 01-JAN-1980" + ) + def test_write(): from unittest.mock import patch @@ -665,7 +683,9 @@ def test_cut_add(): a = Dseqrecord("GGATCCtcatctactatcatcgtagcgtactgatctattctgctgctcatcatcggtactctctataattatatatatatgcgcgtGGATCC").seq b = a.cut(BamHI)[1] - c = Dseqrecord("nCTGCAGtcatctactatcatcgtagcgtactgatctattctgctgctcatcatcggtactctctataattatatatatatgcgcgtGAATTCn").seq + c = Dseqrecord( + "nCTGCAGtcatctactatcatcgtagcgtactgatctattctgctgctcatcatcggtactctctataattatatatatatgcgcgtGAATTCn" + ).seq f, d, l = c.cut((EcoRI, PstI)) pUC19 = read("pUC19.gb") @@ -800,9 +820,9 @@ def test_Dseqrecord_cutting_adding_2(): for enz in enzymes: for f in a: b, c, d = f.cut(enz) - #print(b.seq.__repr__()) - #print(c.seq.__repr__()) - #print(d.seq.__repr__()) + # print(b.seq.__repr__()) + # print(c.seq.__repr__()) + # print(d.seq.__repr__()) e = b + c + d assert str(e.seq).lower() == str(f.seq).lower() @@ -2256,26 +2276,26 @@ def find_feature_by_id(f: Dseqrecord, id: str) -> SeqFeature: # Single cut case, check that features are transmitted correctly. for strand in [1, -1, None]: seq = Dseqrecord("acgtATGaatt", circular=True) - seq.features.append(SeqFeature(SimpleLocation(4, 7, strand), id='full_overlap')) - seq.features.append(SeqFeature(SimpleLocation(3, 7, strand), id='left_side')) - seq.features.append(SeqFeature(SimpleLocation(4, 8, strand), id='right_side')) - seq.features.append(SeqFeature(SimpleLocation(3, 10, strand), id='throughout')) + seq.features.append(SeqFeature(SimpleLocation(4, 7, strand), id="full_overlap")) + seq.features.append(SeqFeature(SimpleLocation(3, 7, strand), id="left_side")) + seq.features.append(SeqFeature(SimpleLocation(4, 8, strand), id="right_side")) + seq.features.append(SeqFeature(SimpleLocation(3, 10, strand), id="throughout")) for shift in range(len(seq)): seq_shifted = seq.shifted(shift) - cut_feature = find_feature_by_id(seq_shifted, 'full_overlap') + cut_feature = find_feature_by_id(seq_shifted, "full_overlap") start, end = _location_boundaries(cut_feature.location) # Cut leaving + and - overhangs in the feature full_overlap for dummy_cut in (((start, -3), None), ((end, 3), None)): open_seq = seq_shifted.apply_cut(dummy_cut, dummy_cut) assert len(open_seq.features) == 4 new_locs = sorted(str(f.location) for f in open_seq.features) - assert str(open_seq.seq) == 'ATGaattacgtATG' + assert str(open_seq.seq) == "ATGaattacgtATG" if strand == 1: - assert new_locs == sorted(['[0:3](+)', '[0:4](+)', '[11:14](+)', '[10:14](+)']) + assert new_locs == sorted(["[0:3](+)", "[0:4](+)", "[11:14](+)", "[10:14](+)"]) elif strand == -1: - assert new_locs == sorted(['[0:3](-)', '[0:4](-)', '[11:14](-)', '[10:14](-)']) + assert new_locs == sorted(["[0:3](-)", "[0:4](-)", "[11:14](-)", "[10:14](-)"]) if strand == None: - assert new_locs == sorted(['[0:3]', '[0:4]', '[11:14]', '[10:14]']) + assert new_locs == sorted(["[0:3]", "[0:4]", "[11:14]", "[10:14]"]) def test_apply_cut(): @@ -2290,26 +2310,26 @@ def find_feature_by_id(f: Dseqrecord, id: str) -> SeqFeature: # Single cut case, check that features are transmitted correctly. for strand in [1, -1, None]: seq = Dseqrecord("acgtATGaatt", circular=True) - seq.features.append(SeqFeature(SimpleLocation(4, 7, strand), id='full_overlap')) - seq.features.append(SeqFeature(SimpleLocation(3, 7, strand), id='left_side')) - seq.features.append(SeqFeature(SimpleLocation(4, 8, strand), id='right_side')) - seq.features.append(SeqFeature(SimpleLocation(3, 10, strand), id='throughout')) + seq.features.append(SeqFeature(SimpleLocation(4, 7, strand), id="full_overlap")) + seq.features.append(SeqFeature(SimpleLocation(3, 7, strand), id="left_side")) + seq.features.append(SeqFeature(SimpleLocation(4, 8, strand), id="right_side")) + seq.features.append(SeqFeature(SimpleLocation(3, 10, strand), id="throughout")) for shift in range(len(seq)): seq_shifted = seq.shifted(shift) - cut_feature = find_feature_by_id(seq_shifted, 'full_overlap') + cut_feature = find_feature_by_id(seq_shifted, "full_overlap") start, end = _location_boundaries(cut_feature.location) # Cut leaving + and - overhangs in the feature full_overlap for dummy_cut in (((start, -3), None), ((end, 3), None)): open_seq = seq_shifted.apply_cut(dummy_cut, dummy_cut) assert len(open_seq.features) == 4 new_locs = sorted(str(f.location) for f in open_seq.features) - assert str(open_seq.seq) == 'ATGaattacgtATG' + assert str(open_seq.seq) == "ATGaattacgtATG" if strand == 1: - assert new_locs == sorted(['[0:3](+)', '[0:4](+)', '[11:14](+)', '[10:14](+)']) + assert new_locs == sorted(["[0:3](+)", "[0:4](+)", "[11:14](+)", "[10:14](+)"]) elif strand == -1: - assert new_locs == sorted(['[0:3](-)', '[0:4](-)', '[11:14](-)', '[10:14](-)']) + assert new_locs == sorted(["[0:3](-)", "[0:4](-)", "[11:14](-)", "[10:14](-)"]) if strand == None: - assert new_locs == sorted(['[0:3]', '[0:4]', '[11:14]', '[10:14]']) + assert new_locs == sorted(["[0:3]", "[0:4]", "[11:14]", "[10:14]"]) if __name__ == "__main__": diff --git a/tests/test_module_myenzymes.py b/tests/test_module_myenzymes.py index 0a536624..dd3c10e4 100644 --- a/tests/test_module_myenzymes.py +++ b/tests/test_module_myenzymes.py @@ -12,27 +12,16 @@ def test_myenzymes(monkeypatch): from importlib import reload reload(myenzymes) - assert len(list(myenzymes.myenzymes)) == 628 + assert len(list(myenzymes.myenzymes)) == 621 -def test_file_not_exist(monkeypatch, caplog): - monkeypatch.setenv("pydna_enzymes", "file_that_does_not_exist.txt") - from pydna import myenzymes - from importlib import reload - reload(myenzymes) - assert len(list(myenzymes.myenzymes)) == 0 - record = next(iter(caplog.records)) - assert len(caplog.records) == 1 - assert record.levelno == logging.WARNING - assert record.message == "file_that_does_not_exist.txt not found." def test_file_is_folder(monkeypatch, caplog): monkeypatch.setenv("pydna_enzymes", "subfolder") from pydna import myenzymes from importlib import reload - reload(myenzymes) assert len(list(myenzymes.myenzymes)) == 0 assert len(caplog.records) == 1 @@ -44,6 +33,19 @@ def test_file_is_folder(monkeypatch, caplog): assert record.message == "subfolder is a directory." +def test_file_not_exist(monkeypatch, caplog): + monkeypatch.setenv("pydna_enzymes", "file_that_does_not_exist.txt") + from pydna import myenzymes + from importlib import reload + + reload(myenzymes) + assert len(list(myenzymes.myenzymes)) == 0 + record = next(iter(caplog.records)) + assert len(caplog.records) == 1 + assert record.levelno == logging.WARNING + assert record.message == "file_that_does_not_exist.txt not found." + + def test_IOError(monkeypatch, caplog): from io import StringIO @@ -90,5 +92,53 @@ def test_Exception(monkeypatch, caplog): assert "Exception" in record.message +# def test_IOError(monkeypatch, caplog): +# monkeypatch = pytest.MonkeyPatch() +# monkeypatch.setenv("pydna_enzymes", "my_test_enzymes.txt") +# from pydna import myenzymes +# from importlib import reload +# reload(myenzymes) +# from io import StringIO +# from unittest.mock import patch +# from unittest.mock import mock_open + +# with patch("myenzymes.open") as mocked_open: +# mocked_open.side_effect = IOError() +# mocked_open.return_value = StringIO("BamHI") +# from pydna import myenzymes +# from importlib import reload +# reload(myenzymes) + +# assert len(list(myenzymes.myenzymes)) == 0 +# assert len(caplog.records) == 1 +# record = next(iter(caplog.records)) +# assert record.levelno == logging.WARNING +# assert record.message == "my_test_enzymes.txt found, but could not be read." + +# def test_Exception(monkeypatch, caplog): +# monkeypatch.setenv("pydna_enzymes", "my_test_enzymes.txt") +# from pydna import myenzymes +# from importlib import reload +# reload(myenzymes) +# from io import StringIO +# from pydna import myenzymes +# from unittest.mock import patch +# from unittest.mock import mock_open + +# with patch("pydna.myenzymes.open") as mocked_open: +# mocked_open.side_effect = Exception() +# mocked_open.return_value = StringIO("BamHI") +# from pydna import myenzymes +# from importlib import reload + +# reload(myenzymes) + +# assert len(list(myenzymes.myenzymes)) == 0 +# assert len(caplog.records) == 1 +# record = next(iter(caplog.records)) +# assert record.levelno == logging.WARNING +# assert "Exception" in record.message + + if __name__ == "__main__": pytest.main([__file__, "-vv", "-s"]) diff --git a/tests/test_module_parsers.py b/tests/test_module_parsers.py index b4f43c50..d7c23156 100644 --- a/tests/test_module_parsers.py +++ b/tests/test_module_parsers.py @@ -7,6 +7,107 @@ import pytest +def test_extract_from_text(): + + text = """\ + >a + aaaa + LOCUS + // + >b + bbbbbb + ID + // + """ + from pydna.parsers import extract_from_text + seqs, gaps = extract_from_text(text) + assert seqs == ('>a\naaaa\n', 'LOCUS\n//', '>b\nbbbbbb\n', 'ID\n//') + assert [g.strip() for g in gaps] == ['', '', '', '', ''] + text = """\ + comment 0 + LOCUS a + // + comment 1 + LOCUS b + // + comment 2 + >c + ccccc + + comment 3 + >ddd + dddddd + ID e + // + comment 4 + """ + seqs, gaps = extract_from_text(text) + assert seqs == ('LOCUS a\n//', 'LOCUS b\n//', '>c\nccccc', '>ddd\ndddddd\n', 'ID e\n//') + assert tuple(g.strip() for g in gaps) == ('comment 0', 'comment 1', 'comment 2', 'comment 3', '', 'comment 4') + + + + from pydna.parsers import embl_gb_fasta + + text = """\ + LOCUS New_linear_DNA 2 bp DNA linear 29-MAR-2024 + DEFINITION . + ACCESSION + VERSION + SOURCE . + ORGANISM . + ORIGIN + 1 aa + // + LOCUS New_circular_DNA 2 bp DNA circular 29-MAR-2024 + DEFINITION . + ACCESSION + VERSION + SOURCE . + ORGANISM . + ORIGIN + 1 aa + // + """ + + lin, crc = embl_gb_fasta(text) + + assert lin.annotations.get("topology") == "linear" + + assert crc.annotations.get("topology") == "circular" + + text = """\ + >a + aaa + >c + ccc + >g + ggg + >t + ttt + """ + + a,c,t,g = embl_gb_fasta(text) + + assert [x.annotations.get("topology") for x in (a,c,g,t)] == ['linear', 'linear', 'linear', 'linear'] + + text = """\ + >a circular + aaa + >c circular + ccc + >g circular + ggg + >t circular + ttt + """ + + a,c,t,g = embl_gb_fasta(text) + + assert [x.annotations.get("topology") for x in (a,c,g,t)] == ['circular', 'circular', 'circular', 'circular'] + + + def test_parse1(): from pydna.parsers import parse from pydna.readers import read @@ -75,19 +176,16 @@ def test_parse1(): assert result.circular == False seqs = parse("RefDataBjorn.fas") - assert len(seqs) == 771 assert list(set([len(a) for a in seqs])) == [901] - pAG25 = read("pAG25.gb") + pAG25 = read("pAG25.gb") assert pAG25.circular == True pCAPs = read("pCAPs.gb") - assert pCAPs.circular == True pUC19 = read("pUC19.gb") - assert pUC19.circular == True input = """ @@ -97,6 +195,8 @@ def test_parse1(): // """ result = parse(input).pop() + assert str(result.seq) == "AAA" + input = """ ID name? standard; circular DNA; UNK; 100 BP. XX @@ -121,6 +221,7 @@ def test_parse1(): // """ result = parse(input).pop() + assert str(result.seq) == "A"*100 def test_parse2(): @@ -144,10 +245,17 @@ def test_parse2(): def test_parse_primers(): from pydna.parsers import parse_primers - data = str(">1\n" "aaaa\n" ">2\n" "cccc\n") parse_primers(data) + f0, r0 = parse_primers(""" + >ForwardPrimer + gctactacacacgtactgactg + + >ReversePrimer + tgtggttactgactctatcttg""") + assert str(f0.seq) == 'gctactacacacgtactgactg' + assert str(r0.seq) == 'tgtggttactgactctatcttg' def test_parse_error(): from pydna.parsers import parse @@ -156,7 +264,6 @@ def test_parse_error(): LOCUS DATA_IS_NOT_A_SEQUENCE //""" - parse(data) assert parse(data) == [] @@ -165,12 +272,12 @@ def test_parse_list(): data = str(">1\n" "aaaa\n" ">2\n" "cccc\n") - parse_primers([data, data]) + assert [str(x.seq) for x in parse_primers([data, data])] == ['aaaa', 'cccc', 'aaaa', 'cccc'] def test_misc_parse(): - from pydna.parsers import parse + from pydna.parsers import parse from Bio.SeqIO import read as BPread from Bio.SeqIO import parse as BPparse @@ -207,6 +314,56 @@ def test_dna2949(): assert len(seqlist) == 1 assert seqlist[0].seguid() == "ldseguid=ScLoSddUf2c0GIAGpvIi33nLvFY" +def proteins(): + from pydna.parsers import embl_gb_fasta + proteins = """\ + >pdb|3VQM|V Chain V, C-terminal peptide from Small heat shock protein StHsp14.0 + VIKIE + + LOCUS 3VQM_W 5 aa linear SYN 08-NOV-2023 + DEFINITION Chain W, C-terminal peptide from Small heat shock protein + StHsp14.0. + ACCESSION 3VQM_W + VERSION 3VQM_W + DBSOURCE pdb: molecule 3VQM, chain W, release Nov 8, 2023; + deposition: Mar 26, 2012; + class: CHAPERONE; + source: Mmdb_id: 100300, Pdb_id 1: 3VQM; + Exp. method: X-ray Diffraction. + KEYWORDS . + SOURCE synthetic construct + ORGANISM synthetic construct + other sequences; artificial sequences. + REFERENCE 1 (residues 1 to 5) + AUTHORS Hanazono,Y., Takeda,K., Yohda,M. and Miki,K. + TITLE Structural studies on the oligomeric transition of a small heat + shock protein, StHsp14.0 + JOURNAL J Mol Biol 422 (1), 100-108 (2012) + PUBMED 22613762 + REFERENCE 2 (residues 1 to 5) + AUTHORS Hanazono,Y., Takeda,K. and Miki,K. + TITLE Direct Submission + JOURNAL Submitted (26-MAR-2012) + COMMENT Small heat shock protein hsp14.0 of C-terminal deletion variant + with C-terminal peptide. + FEATURES Location/Qualifiers + source 1..5 + /organism="synthetic construct" + /db_xref="taxon:32630" + ORIGIN + 1 vikie + // + """ + + + fa, gb = embl_gb_fasta(proteins) + + assert fa.annotations["molecule_type"] == "protein" + assert gb.annotations["molecule_type"] == "protein" + + assert fa.annotations["topology"] == "linear" + assert gb.annotations["topology"] == "linear" + if __name__ == "__main__": pytest.main([__file__, "-v", "-s"]) diff --git a/tests/test_module_seq.py b/tests/test_module_seq.py index a9e496e4..f715dc65 100644 --- a/tests/test_module_seq.py +++ b/tests/test_module_seq.py @@ -81,7 +81,7 @@ def test_stopcodon(): def test_orf(): s = Seq("atgaaattttaa") - assert s.orfs(2) == [Seq("atgaaattttaa")] + assert s.orfs(2) == [(0, 12)] def test_no_orf(): @@ -89,18 +89,6 @@ def test_no_orf(): assert s2.orfs(2) == [] -def test_orfs(): - from pydna.dseqrecord import Dseqrecord - - s = Dseqrecord( - "tctgcaataATGGGTAATGAAATCGATGAGAAAAATCAGGCCCCCGTGCAACAAGAATGCCTGAAAGAGATGATTCAGAATGGGCATGCTCGGCGTATGGGATCTGTTGAAGATCTGTATGTTGCTCTCAACAGACAAAACTTATATCGAAACTTCTGCACATATGGAGAATTGAGTGATTACTGTACTAGGGATCAGCTCACATTAGCTTTGAGGGAAATCTGCCTGAAAAATCCAACTCTTTTACATATTGTTCTACCAACAAGATGGCCAAATCATGAAAATTATTATCGCAGTTCCGAATACTATTCACGGCCACATCCAGTGCATGATTATATTTCAGTATTACAAGAATTGAAACTGAGTGGTGTGGTTCTCAATGAACAACCTGAGTACAGTGCAGTAATGAAGCAAATATTAGAAGAATTCAAAAATAGTAAGGGTTCCTATACTGCAAAAATTTTTAAACTTACTACCACTTTGACTATTCCTTACTTTGGACCAACAGGACCGAGTTGGCGGCTAATTTGTCTTCCAGAAGAGCACACAGAAAAGTGGAAAAAATTTATCTTTGTATCTAATCATTGCATGTCTGATGGTCGGTCTTCGATCCACTTTTTTCATGATTTAAGAGACGAATTAAATAATATTAAAACTCCACCAAAAAAATTAGATTACATTTTCAAGTACGAGGAGGATTACCAATTATTGAGGAAACTTCCAGAACCGATCGAAAAGGTGATAGACTTTAGACCACCGTACTTGTTTATTCCGAAGTCACTTCTTTCGGGTTTCATCTACAATCATTTGAGATTTTCTTCAAAAGGTGTCTGTATGAGAATGGATGATGTGGAAAAAACCGATGATGTTGTCACCGAGATCATCAATATTTCACCAACAGAATTTCAAGCGATTAAAGCAAATATTAAATCAAATATCCAAGGTAAGTGTACTATCACTCCGTTTTTACATGTTTGTTGGTTTGTATCTCTTCATAAATGGGGTAAATTTTTCAAACCATTGAACTTCGAATGGCTTACGGATATTTTTATCCCCGCAGATTGCCGCTCACAACTACCAGATGATGATGAAATGAGACAGATGTACAGATATGGCGCTAACGTTGGATTTATTGACTTCACCCCCTGGATAAGCGAATTTGACATGAATGATAACAAAGAAAATTTTTGGCCACTTATTGAGCACTACCATGAAGTAATTTCGGAAGCTTTAAGAAATAAAAAGCATCTCCATGGCTTAGGGTTCAATATACAAGGCTTCGTTCAAAAATATGTGAACATTGACAAGGTAATGTGCGATCGTGCCATCGGGAAAAGACGCGGAGGTACATTGTTAAGCAATGTAGGTCTGTTTAATCAGTTAGAGGAGCCCGATGCCAAATATTCTATATGCGATTTGGCATTTGGCCAATTTCAAGGATCCTGGCACCAAGCATTTTCCTTGGGTGTTTGTTCGACTAATGTAAAGGGGATGAATATTGTTGTTGCTTCAACAAAGAATGTTGTTGGTAGTCAAGAATCTCTCGAAGAGCTTTGCTCCATTTACAAAGCTCTCCTTTTAGGCCCTTAA" - ) - - lens = (1581, 1002, 159, 123, 123, 117, 105) - for orf, ln in zip(s.orfs(), lens): - assert len(orf) == ln - - if __name__ == "__main__": args = [ __file__, diff --git a/tests/test_module_tm.py b/tests/test_module_tm.py index 9ea1ba65..25d1c04c 100755 --- a/tests/test_module_tm.py +++ b/tests/test_module_tm.py @@ -34,5 +34,30 @@ def test_tms(): tm.Q5(primer) +def test_tm_neb(): + from pydna import tm + import requests + from unittest.mock import patch + + primer = "AGTCTAGTCTGTGTAGTTTCGACTAGTCTATCG" + + assert type(tm.tm_neb(primer)) is int + + # Test invalid sequence + with pytest.raises(requests.exceptions.HTTPError) as excinfo: + tm.tm_neb("blah") + + assert "[Errno 400]" in str(excinfo.value) + + # Test server down + with patch("requests.get") as mock_get: + mock_get.side_effect = requests.exceptions.ConnectionError() + + with pytest.raises(requests.exceptions.ConnectionError) as excinfo: + tm.tm_neb("blah") + + assert "Could not connect to NEB API" in str(excinfo.value) + + if __name__ == "__main__": pytest.main([__file__, "-vv", "-s"]) diff --git a/tests/test_module_user.py b/tests/test_module_user.py new file mode 100644 index 00000000..42a533b5 --- /dev/null +++ b/tests/test_module_user.py @@ -0,0 +1,299 @@ +#!/usr/bin/env python +# -*- coding: utf-8 -*- + +import pytest + + +def test_user_enzyme(): + from pydna.user import USER + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + AACGAuGTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuAGAAA + """ + ) + + result_a = Dseq.from_representation( + """\ + GTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGC + """ + ) + + us = USER(size=4) + # print(a.cut(us)[1].__repr__()) + # print(result_a) + assert a.cut(us)[1] == result_a + + +def test_user_enzyme2(): + from pydna.user import USER + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + AACGAuGTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCuGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCTAGAAA + """ + ) + + result_a = Dseq.from_representation( + """\ + GTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGATCTTT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTC + """ + ) + + us = USER(size=4) + # print(a.cut(us)[1].__repr__()) + # print(result_a) + assert a.cut(us)[1] == result_a + + +def test_user_enzyme_impossible(): + from pydna.user import USER + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + AACGATGTCGACTTAGATCTCACAGGCTTTTTTCAAGACGGCCTTGAATTCAGTCAuTTGGATCCGGCCGATCTTT + TTGCTACAGCTGAAuCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCTAGAAA + """ + ) + + # These are the three expected results in vitro + # result_a_1 is the most likely, since the shortest leftover sequences are more likely to detach + result_a_1 = Dseq.from_representation( + """\ + AACGATGTCGACTTAGATCTCACAGGCTTTTTTCAAGACGGCCTTGAATTCAGTCA + CTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCTAGAAA + """ + ) + result_a_2 = Dseq.from_representation( + """\ + TTGGATCCGGCCGATCTTT + CTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCTAGAAA + """ + ) + + result_a_3 = Dseq.from_representation( + """\ + AACGATGTCGACTTAGATCTCACAGGCTTTTTTCAAGACGGCCTTGAATTCAGTCA + TTGCTACAGCTGAA + """ + ) + + us = USER(size=4) + for t in [result_a_1, result_a_2, result_a_3]: + assert t in a.cut(us) + + +def test_user_enzyme_short_motif(): + """ + A user site without enough upstream bases should not be recongnized. + """ + from pydna.user import USER + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + AACGAuGTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGAT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuA + """ + ) + + result_a = Dseq.from_representation( + """\ + GTCGACTTAGATCTCACAGGCTTTTTTCAAGaCGGCCTTGAATTCAGTCATTTGGATCCGGCCGAT + TTGCTACAGCTGAATCTAGAGTGTCCGAAAAAAGTTCTGCCGGAACTTAAGTCAGTAAACCTAGGCCGGCuA + """ + ) + + us = USER(size=4) + # print(a.cut(us)[1].__repr__()) + # print(a.cut(us)[1].reverse_complement()) + # print(result_a) + assert a.cut(us)[1] == result_a + + +def test_many_user_sites(): + pass + + +def test_nickase_upstream(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACCATCAGC + CGACTCCGAATTAATTTGGTAGTCG + """ + ) + + result_a = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACCATCAGC + CGACT + """ + ) + + nickase = NtBbvCI() + assert a.cut(nickase)[0] == result_a + + +def test_nickase_downstream(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + GCTGAGTGCTTAATTAAACCTCAGC + CGACTCACGAATTAATTTGGAGTCG + """ + ) + + result_a = Dseq.from_representation( + """\ + TCAGC + CGACTCACGAATTAATTTGGAGTCG + """ + ) + + nickase = NtBbvCI() + assert a.cut(nickase)[1] == result_a + + +def test_nickase_with_crick_site_before_watson_site(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACCTCAGC + CGACTCCGAATTAATTTGGAGTCG + """ + ) + + result_a_1 = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAA + GAATTAATTTGGAGTCG + """ + ) + + result_a_2 = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACC + CGACT + """ + ) + + result_a_3 = Dseq.from_representation( + """\ + TCAGC + GAATTAATTTGGAGTCG + """ + ) + + for t in [result_a_1, result_a_2, result_a_3]: + assert t in a.cut(NtBbvCI()) + + # raise NotImplementedError("No code covering this behavior yet") + + +def test_nickase_with_watson_site_before_crick_site(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + + a = Dseq.from_representation( + """\ + AACCTCAGCACTATCTTAGCTGAGGCTTAATTA + TTGGAGTCGTGATAGAATCGACTCCGAATTAAT + """ + ) + + result_a_1 = Dseq("AACC", crick="", ovhg=0) + + result_a_2 = Dseq.from_representation( + """\ + TCAGCACTATCTTAGCTGAGGCTTAATTA + TTGGAGTCGTGATAGAATCGACT + """ + ) + + result_a_3 = Dseq(watson="", crick="TAATTAAGCC", ovhg=10) + + for t in [result_a_1, result_a_2, result_a_3]: + assert t in a.cut(NtBbvCI()) + + +def test_nickase_with_pac_before(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + from Bio.Restriction import PacI + + a = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACCCAGC + CGACTCCGAATTAATTTGGGTCG + """ + ) + res_pac_1 = Dseq.from_representation( + """\ + GCTGAGGCTTAAT + CGACTCCGAAT + """ + ) + + res_pac_2 = Dseq.from_representation( + """\ + TAAACCCAGC + TAATTTGGGTCG + """ + ) + + # This should work regardless, comes from another module + pac_cuts = a.cut(PacI) + assert pac_cuts[0] == res_pac_1 + assert pac_cuts[1] == res_pac_2 + + res_pac_1_nickase_1 = Dseq.from_representation( + """\ + GCTGAGGCTTAAT + CGACT + """ + ) + + nickase = NtBbvCI() + assert res_pac_1_nickase_1 in res_pac_1.cut(nickase) + + res_pac_2_nickase_1 = Dseq.from_representation( + """\ + CAGC + TAATTTGGGTCG + """ + ) + + assert res_pac_2_nickase_1 in res_pac_2.cut(nickase) + + +def test_nickase_with_pac_together(): + from pydna.user import NtBbvCI + from pydna.dseq import Dseq + from Bio.Restriction import PacI + + a = Dseq.from_representation( + """\ + GCTGAGGCTTAATTAAACCTCAGC + CGACTCCGAATTAATTTGGAGTCG + """ + ) + + a.cut(NtBbvCI() + PacI()) # Not implemented yet, because NtBbvCI is not a RestrictionType + + +if __name__ == "__main__": + pytest.main([__file__, "-vv", "-s"]) diff --git a/tests/test_module_utils.py b/tests/test_module_utils.py index 47f1c8e4..6a25d74f 100644 --- a/tests/test_module_utils.py +++ b/tests/test_module_utils.py @@ -407,7 +407,6 @@ def test_smallest_rotation(): def test_memorize(monkeypatch): - import pytest from unittest import mock from pydna.utils import memorize as _memorize @@ -474,6 +473,67 @@ def test_shift_location(): loc = SimpleLocation(0, 2, strand) assert shift_location(shift_location(loc, 1, 6), -1, 6) == loc + # Shifting location on circular sequence + for strand in (1, -1, None): + loc = SimpleLocation(0, 4, strand) + assert shift_location(loc, 1, 6) == SimpleLocation(1, 5, strand) + if strand == -1: + assert shift_location(loc, -1, 6) == SimpleLocation(0, 3, strand) + SimpleLocation(5, 6, strand) + else: + assert shift_location(loc, -1, 6) == SimpleLocation(5, 6, strand) + SimpleLocation(0, 3, strand) + + # Shifting ignoring the sequence length + # See https://github.com/BjornFJohansson/pydna/issues/281 + for strand in (1, -1, None): + loc = SimpleLocation(4, 6, strand) + assert shift_location(loc, 1000, None) == SimpleLocation(1004, 1006, strand) + assert shift_location(loc, -4, None) == SimpleLocation(0, 2, strand) + try: + shift_location(loc, -1000, None) + raise AssertionError("Shift below zero should raise ValueError") + except ValueError: + pass + + composed_loc = SimpleLocation(2, 4, strand) + SimpleLocation(5, 6, strand) + assert shift_location(composed_loc, 1000, None) == SimpleLocation(1002, 1004, strand) + SimpleLocation( + 1005, 1006, strand + ) + assert shift_location(composed_loc, -2, None) == SimpleLocation(0, 2, strand) + SimpleLocation(3, 4, strand) + + +def test_locations_overlap(): + from pydna.utils import locations_overlap, shift_location + from Bio.SeqFeature import SimpleLocation + + # exact ===== | + # greater ========= | + # inner == | + # right ===== | + # left ===== | + # main ===== | + # ----------------------------------------- + # 0123456789 + main_overlap = SimpleLocation(5, 10) + inner_overlap = SimpleLocation(6, 8) + right_overlap = SimpleLocation(6, 11) + left_overlap = SimpleLocation(4, 9) + exact_overlap = SimpleLocation(5, 10) + greater_overlap = SimpleLocation(3, 12) + no_overlap_left = SimpleLocation(0, 5) + no_overlap_right = SimpleLocation(11, 15) + + overlapping_locations = [inner_overlap, right_overlap, left_overlap, exact_overlap, greater_overlap] + non_overlapping_locations = [no_overlap_left, no_overlap_right] + + for shift in range(20): + main_shifted = shift_location(main_overlap, shift, 20) + for loc in overlapping_locations: + loc_shifted = shift_location(loc, shift, 20) + assert locations_overlap(main_shifted, loc_shifted, 20) + for loc in non_overlapping_locations: + loc_shifted = shift_location(loc, shift, 20) + assert not locations_overlap(main_shifted, loc_shifted, 20) + if __name__ == "__main__": pytest.main([__file__, "-vv", "-s"])