From 64fcc1ca64dae20b2f5624fb563fc18ab927b9ae Mon Sep 17 00:00:00 2001 From: Du Phan Date: Mon, 13 May 2024 15:37:30 -0400 Subject: [PATCH] Bump to 0.15.0 (#1797) * Bump to 0.15.0 * fix headers in ODE tutorial --- examples/annotation.py | 2 +- examples/ar2.py | 2 +- examples/baseball.py | 2 +- examples/bnn.py | 2 +- examples/covtype.py | 2 +- examples/funnel.py | 2 +- examples/gaussian_shells.py | 2 +- examples/gp.py | 2 +- examples/hmm.py | 2 +- examples/holt_winters.py | 2 +- examples/horseshoe_regression.py | 2 +- examples/minipyro.py | 2 +- examples/mortality.py | 2 +- examples/neutra.py | 2 +- examples/ode.py | 2 +- examples/prodlda.py | 2 +- examples/proportion_test.py | 2 +- examples/sparse_regression.py | 2 +- examples/stochastic_volatility.py | 2 +- examples/thompson_sampling.py | 2 +- examples/toy_mixture_model_discrete_enumeration.py | 2 +- examples/ucbadmit.py | 2 +- examples/vae.py | 2 +- notebooks/source/bad_posterior_geometry.ipynb | 2 +- .../source/bayesian_hierarchical_linear_regression.ipynb | 2 +- notebooks/source/bayesian_hierarchical_stacking.ipynb | 2 +- notebooks/source/bayesian_imputation.ipynb | 2 +- notebooks/source/bayesian_regression.ipynb | 2 +- notebooks/source/censoring.ipynb | 2 +- notebooks/source/gmm.ipynb | 2 +- notebooks/source/hsgp_example.ipynb | 2 +- notebooks/source/logistic_regression.ipynb | 2 +- notebooks/source/lotka_volterra_multiple.ipynb | 8 ++++---- notebooks/source/model_rendering.ipynb | 2 +- notebooks/source/ordinal_regression.ipynb | 2 +- notebooks/source/time_series_forecasting.ipynb | 2 +- numpyro/version.py | 2 +- 37 files changed, 40 insertions(+), 40 deletions(-) diff --git a/examples/annotation.py b/examples/annotation.py index c6fee5c2a..881825316 100644 --- a/examples/annotation.py +++ b/examples/annotation.py @@ -320,7 +320,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Bayesian Models of Annotation") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/ar2.py b/examples/ar2.py index b60bc102d..488dd6f17 100644 --- a/examples/ar2.py +++ b/examples/ar2.py @@ -114,7 +114,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="AR2 example") parser.add_argument("--num-data", nargs="?", default=142, type=int) parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) diff --git a/examples/baseball.py b/examples/baseball.py index 6dbd19c93..1588d5898 100644 --- a/examples/baseball.py +++ b/examples/baseball.py @@ -210,7 +210,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Baseball batting average using MCMC") parser.add_argument("-n", "--num-samples", nargs="?", default=3000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1500, type=int) diff --git a/examples/bnn.py b/examples/bnn.py index 0ce4dd4f9..9dd29d291 100644 --- a/examples/bnn.py +++ b/examples/bnn.py @@ -160,7 +160,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Bayesian neural network example") parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/covtype.py b/examples/covtype.py index 660cb0b47..8b59b99dc 100644 --- a/examples/covtype.py +++ b/examples/covtype.py @@ -206,7 +206,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="parse args") parser.add_argument( "-n", "--num-samples", default=1000, type=int, help="number of samples" diff --git a/examples/funnel.py b/examples/funnel.py index 81cd78a0f..2e9c3d1b6 100644 --- a/examples/funnel.py +++ b/examples/funnel.py @@ -139,7 +139,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser( description="Non-centered reparameterization example" ) diff --git a/examples/gaussian_shells.py b/examples/gaussian_shells.py index 3d86de21a..98870b167 100644 --- a/examples/gaussian_shells.py +++ b/examples/gaussian_shells.py @@ -120,7 +120,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Nested sampler for Gaussian shells") parser.add_argument("-n", "--num-samples", nargs="?", default=10000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/gp.py b/examples/gp.py index 6afd5d13b..aac9632f8 100644 --- a/examples/gp.py +++ b/examples/gp.py @@ -180,7 +180,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Gaussian Process example") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/hmm.py b/examples/hmm.py index 073c601ba..c414ba59d 100644 --- a/examples/hmm.py +++ b/examples/hmm.py @@ -263,7 +263,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Semi-supervised Hidden Markov Model") parser.add_argument("--num-categories", default=3, type=int) parser.add_argument("--num-words", default=10, type=int) diff --git a/examples/holt_winters.py b/examples/holt_winters.py index 746a3a3c9..621f0eb35 100644 --- a/examples/holt_winters.py +++ b/examples/holt_winters.py @@ -180,7 +180,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Holt-Winters") parser.add_argument("--T", nargs="?", default=6, type=int) parser.add_argument("--future", nargs="?", default=1, type=int) diff --git a/examples/horseshoe_regression.py b/examples/horseshoe_regression.py index 686b115cf..834483aa6 100644 --- a/examples/horseshoe_regression.py +++ b/examples/horseshoe_regression.py @@ -162,7 +162,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Horseshoe regression example") parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/minipyro.py b/examples/minipyro.py index 2aa603979..aeea67d0d 100644 --- a/examples/minipyro.py +++ b/examples/minipyro.py @@ -58,7 +58,7 @@ def body_fn(i, val): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Mini Pyro demo") parser.add_argument("-f", "--full-pyro", action="store_true", default=False) parser.add_argument("-n", "--num-steps", default=1001, type=int) diff --git a/examples/mortality.py b/examples/mortality.py index cf7f2a47e..27a624511 100644 --- a/examples/mortality.py +++ b/examples/mortality.py @@ -220,7 +220,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Mortality regression model") parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int) diff --git a/examples/neutra.py b/examples/neutra.py index af130ebfc..780e420f2 100644 --- a/examples/neutra.py +++ b/examples/neutra.py @@ -197,7 +197,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="NeuTra HMC") parser.add_argument("-n", "--num-samples", nargs="?", default=4000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/ode.py b/examples/ode.py index 2d578ab41..cd5a6eabe 100644 --- a/examples/ode.py +++ b/examples/ode.py @@ -117,7 +117,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Predator-Prey Model") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/prodlda.py b/examples/prodlda.py index 40d6444ca..1c82b27a7 100644 --- a/examples/prodlda.py +++ b/examples/prodlda.py @@ -315,7 +315,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser( description="Probabilistic topic modelling with Flax and Haiku" ) diff --git a/examples/proportion_test.py b/examples/proportion_test.py index 8ca97d898..bdbe1330f 100644 --- a/examples/proportion_test.py +++ b/examples/proportion_test.py @@ -158,7 +158,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Testing whether ") parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int) parser.add_argument("--num-warmup", nargs="?", default=1500, type=int) diff --git a/examples/sparse_regression.py b/examples/sparse_regression.py index d4529b0d4..84f1ae8b5 100644 --- a/examples/sparse_regression.py +++ b/examples/sparse_regression.py @@ -384,7 +384,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Gaussian Process example") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=500, type=int) diff --git a/examples/stochastic_volatility.py b/examples/stochastic_volatility.py index eaacbbb29..9b2ceefb6 100644 --- a/examples/stochastic_volatility.py +++ b/examples/stochastic_volatility.py @@ -122,7 +122,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Stochastic Volatility Model") parser.add_argument("-n", "--num-samples", nargs="?", default=600, type=int) parser.add_argument("--num-warmup", nargs="?", default=600, type=int) diff --git a/examples/thompson_sampling.py b/examples/thompson_sampling.py index b1f82e099..1e61e4890 100644 --- a/examples/thompson_sampling.py +++ b/examples/thompson_sampling.py @@ -292,7 +292,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Thompson sampling example") parser.add_argument( "--num-random", nargs="?", default=2, type=int, help="number of random draws" diff --git a/examples/toy_mixture_model_discrete_enumeration.py b/examples/toy_mixture_model_discrete_enumeration.py index dc6cf45a9..ae68d170a 100644 --- a/examples/toy_mixture_model_discrete_enumeration.py +++ b/examples/toy_mixture_model_discrete_enumeration.py @@ -126,7 +126,7 @@ def get_true_pred_CPDs(CPD, posterior_param): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="Toy mixture model") parser.add_argument("-n", "--num-steps", default=4000, type=int) parser.add_argument("-o", "--num-obs", default=10000, type=int) diff --git a/examples/ucbadmit.py b/examples/ucbadmit.py index 57587f5a4..f35cb03f7 100644 --- a/examples/ucbadmit.py +++ b/examples/ucbadmit.py @@ -151,7 +151,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser( description="UCBadmit gender discrimination using HMC" ) diff --git a/examples/vae.py b/examples/vae.py index a0a048951..f9f5732d0 100644 --- a/examples/vae.py +++ b/examples/vae.py @@ -160,7 +160,7 @@ def reconstruct_img(epoch, rng_key): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.14.0") + assert numpyro.__version__.startswith("0.15.0") parser = argparse.ArgumentParser(description="parse args") parser.add_argument( "-n", "--num-epochs", default=15, type=int, help="number of training epochs" diff --git a/notebooks/source/bad_posterior_geometry.ipynb b/notebooks/source/bad_posterior_geometry.ipynb index fb83ddf40..3d61fd14e 100644 --- a/notebooks/source/bad_posterior_geometry.ipynb +++ b/notebooks/source/bad_posterior_geometry.ipynb @@ -49,7 +49,7 @@ "import numpyro.distributions as dist\n", "from numpyro.infer import MCMC, NUTS\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")\n", + "assert numpyro.__version__.startswith(\"0.15.0\")\n", "\n", "# NB: replace cpu by gpu to run this notebook on gpu\n", "numpyro.set_platform(\"cpu\")" diff --git a/notebooks/source/bayesian_hierarchical_linear_regression.ipynb b/notebooks/source/bayesian_hierarchical_linear_regression.ipynb index 499c1b2a5..8d29d9158 100644 --- a/notebooks/source/bayesian_hierarchical_linear_regression.ipynb +++ b/notebooks/source/bayesian_hierarchical_linear_regression.ipynb @@ -246,7 +246,7 @@ "import numpyro.distributions as dist\n", "from numpyro.infer import MCMC, NUTS, Predictive\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/bayesian_hierarchical_stacking.ipynb b/notebooks/source/bayesian_hierarchical_stacking.ipynb index 69ad329ef..e03174ef7 100644 --- a/notebooks/source/bayesian_hierarchical_stacking.ipynb +++ b/notebooks/source/bayesian_hierarchical_stacking.ipynb @@ -97,7 +97,7 @@ " set_matplotlib_formats(\"svg\")\n", "\n", "numpyro.set_host_device_count(4)\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/bayesian_imputation.ipynb b/notebooks/source/bayesian_imputation.ipynb index da0b792e3..ab223bdf1 100644 --- a/notebooks/source/bayesian_imputation.ipynb +++ b/notebooks/source/bayesian_imputation.ipynb @@ -52,7 +52,7 @@ "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n", " set_matplotlib_formats(\"svg\")\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/bayesian_regression.ipynb b/notebooks/source/bayesian_regression.ipynb index d3eafc7f1..f1a8bcf20 100644 --- a/notebooks/source/bayesian_regression.ipynb +++ b/notebooks/source/bayesian_regression.ipynb @@ -73,7 +73,7 @@ "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n", " set_matplotlib_formats(\"svg\")\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/censoring.ipynb b/notebooks/source/censoring.ipynb index ab4158e91..a1c2d6dff 100644 --- a/notebooks/source/censoring.ipynb +++ b/notebooks/source/censoring.ipynb @@ -60,7 +60,7 @@ "\n", "rng_key = random.PRNGKey(seed=0)\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")\n", + "assert numpyro.__version__.startswith(\"0.15.0\")\n", "\n", "%load_ext autoreload\n", "%autoreload 2\n", diff --git a/notebooks/source/gmm.ipynb b/notebooks/source/gmm.ipynb index b9cb4d3fd..b64e65167 100644 --- a/notebooks/source/gmm.ipynb +++ b/notebooks/source/gmm.ipynb @@ -54,7 +54,7 @@ "%matplotlib inline\n", "\n", "smoke_test = \"CI\" in os.environ\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/hsgp_example.ipynb b/notebooks/source/hsgp_example.ipynb index f2725f1b8..488d4b6f1 100644 --- a/notebooks/source/hsgp_example.ipynb +++ b/notebooks/source/hsgp_example.ipynb @@ -62,7 +62,7 @@ "\n", "rng_key = random.PRNGKey(seed=42)\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")\n", + "assert numpyro.__version__.startswith(\"0.15.0\")\n", "\n", "%load_ext autoreload\n", "%autoreload 2\n", diff --git a/notebooks/source/logistic_regression.ipynb b/notebooks/source/logistic_regression.ipynb index e965f76d0..0432ca010 100644 --- a/notebooks/source/logistic_regression.ipynb +++ b/notebooks/source/logistic_regression.ipynb @@ -41,7 +41,7 @@ "from numpyro.examples.datasets import COVTYPE, load_dataset\n", "from numpyro.infer import HMC, MCMC, NUTS\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")\n", + "assert numpyro.__version__.startswith(\"0.15.0\")\n", "\n", "# NB: replace gpu by cpu to run this notebook in cpu\n", "numpyro.set_platform(\"gpu\")" diff --git a/notebooks/source/lotka_volterra_multiple.ipynb b/notebooks/source/lotka_volterra_multiple.ipynb index 35a14355c..331e82e33 100644 --- a/notebooks/source/lotka_volterra_multiple.ipynb +++ b/notebooks/source/lotka_volterra_multiple.ipynb @@ -63,7 +63,7 @@ "id": "x2ZjUuurtZiw" }, "source": [ - "# Model" + "## Model" ] }, { @@ -143,7 +143,7 @@ "id": "t22Nb8qrt4j0" }, "source": [ - "# Dataset\n", + "## Dataset\n", "\n" ] }, @@ -474,7 +474,7 @@ "id": "8DSzUkX7vxCU" }, "source": [ - "# Perform MCMC.\n", + "## Perform MCMC.\n", "\n" ] }, @@ -559,7 +559,7 @@ "id": "UyujXNDJD3vQ" }, "source": [ - "# Run predictions." + "## Run predictions." ] }, { diff --git a/notebooks/source/model_rendering.ipynb b/notebooks/source/model_rendering.ipynb index 66b3ed360..359d6886a 100644 --- a/notebooks/source/model_rendering.ipynb +++ b/notebooks/source/model_rendering.ipynb @@ -38,7 +38,7 @@ "import numpyro.distributions as dist\n", "import numpyro.distributions.constraints as constraints\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/ordinal_regression.ipynb b/notebooks/source/ordinal_regression.ipynb index 656bfbb3e..fcb610095 100644 --- a/notebooks/source/ordinal_regression.ipynb +++ b/notebooks/source/ordinal_regression.ipynb @@ -54,7 +54,7 @@ "from numpyro.infer import MCMC, NUTS\n", "from numpyro.infer.reparam import TransformReparam\n", "\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/notebooks/source/time_series_forecasting.ipynb b/notebooks/source/time_series_forecasting.ipynb index 29479a504..3ff5667d6 100644 --- a/notebooks/source/time_series_forecasting.ipynb +++ b/notebooks/source/time_series_forecasting.ipynb @@ -48,7 +48,7 @@ " set_matplotlib_formats(\"svg\")\n", "\n", "numpyro.set_host_device_count(4)\n", - "assert numpyro.__version__.startswith(\"0.14.0\")" + "assert numpyro.__version__.startswith(\"0.15.0\")" ] }, { diff --git a/numpyro/version.py b/numpyro/version.py index ca2e623a3..c44b61ed5 100644 --- a/numpyro/version.py +++ b/numpyro/version.py @@ -1,4 +1,4 @@ # Copyright Contributors to the Pyro project. # SPDX-License-Identifier: Apache-2.0 -__version__ = "0.14.0" +__version__ = "0.15.0"