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qiime deblur denoise-16S/denoise-other not working on usegalaxy.eu #51

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Oddant1 opened this issue Feb 26, 2024 · 2 comments
Open

qiime deblur denoise-16S/denoise-other not working on usegalaxy.eu #51

Oddant1 opened this issue Feb 26, 2024 · 2 comments

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@Oddant1
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Oddant1 commented Feb 26, 2024

@bernt-matthias and @bgruening I'm splitting this off from conversation on #48 because this issue isn't directly related to that PR at this point.

@Oddant1
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Oddant1 commented Feb 26, 2024

@bgruening I'm not sure if this is relevant, but when I create a QIIME 2 conda environment on my local machine I get this error in regards to the deblur dependency (the one that appears to be missing on usegalaxy.eu causing the tool failures)

SafetyError: The package for deblur located at /home/anthony/miniconda3/pkgs/deblur-1.1.1-pyhdfd78af_0                
appears to be corrupted. The path 'site-packages/deblur/workflow.py'                                                  
has an incorrect size.                                                                                                
  reported size: 34086 bytes                                                                                          
  actual size: 34130 bytes   

The dependency appears to still work fine for me, but this error stood out to me as potentially related. It isn't a fluke I see it every time I create an environment.

@Oddant1 Oddant1 changed the title qiime denoise deblur-16S/denoise-other not working on usegalaxy.eu qiime deblur denoise-16S/denoise-other not working on usegalaxy.eu Feb 26, 2024
@bernt-matthias
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This is most often happening if you edit files in conda environments. Anyway the qiime2 tools should use the container, i.e. the conda error should be unrelated.

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