Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Extra text in tool version #55

Open
bernt-matthias opened this issue Oct 18, 2023 · 2 comments
Open

Extra text in tool version #55

bernt-matthias opened this issue Oct 18, 2023 · 2 comments
Assignees
Labels
bug-sev:1|negligible bug-type:1|cosmetic UX is less than ideal; something is superficially wrong. type:bug Something is wrong.

Comments

@bernt-matthias
Copy link

bernt-matthias commented Oct 18, 2023

Seems that the tool version command outputs some extra text:

Matplotlib created a temporary config/cache directory at /tmp/matplotlib-kaxxsc2g because the default path (/home/qiime2/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
diversity version 2022.11.1

I guess MPLCONFIGDIR should be set for the version command (and maybe even for command).

Alternatively one could use some redirection / grep / tail to get only the actual version.

@ebolyen ebolyen transferred this issue from qiime2/galaxy-tools May 30, 2024
@ebolyen
Copy link
Member

ebolyen commented May 30, 2024

I think we need to silence all stdout in our driver until it's time to print the version. It's annoying, but should prevent this and other warnings from slipping in.

@github-project-automation github-project-automation bot moved this to Backlog in 2024.10 🎃 May 30, 2024
@ebolyen ebolyen added type:bug Something is wrong. bug-sev:1|negligible bug-type:1|cosmetic UX is less than ideal; something is superficially wrong. labels May 30, 2024
@ebolyen
Copy link
Member

ebolyen commented May 30, 2024

I'll work on getting this fixed in the next release!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug-sev:1|negligible bug-type:1|cosmetic UX is less than ideal; something is superficially wrong. type:bug Something is wrong.
Projects
Status: Backlog
Development

No branches or pull requests

2 participants