README.md

C. elegans L2 single cell data for VisCello

Data from Cao, Junyue, et al., 2017

Prepared for VisCello by Jonathan Packer and Qin Zhu

Online version

Link: https://cello.shinyapps.io/celegans_L2/

Bugs you found with the online tool please post to https://github.com/qinzhu/VisCello.

Usage

1. Install VisCello from https://github.com/qinzhu/VisCello

2. Git clone this data folder to local.

3. In R:

library(VisCello)
cello("~/Downloads/Celegans.L2.Cello") # Change path if necessary

See also:

• C. elegans embryogenesis data and tool: https://github.com/qinzhu/VisCello.celegans

• C. elegans Tintori et al. data (up to 16 cell stage): https://github.com/qinzhu/Celegans.Tintori.Cello

Cite VisCello

Packer, J.S., Zhu, Q., Huynh, C., Sivaramakrishnan, P., Preston, E., Dueck, H., Stefanik, D., Tan, K., Trapnell, C., Kim, J. and Waterston, R.H., 2019. A lineage-resolved molecular atlas of C. elegans embryogenesis at single cell resolution. BioRxiv, p.565549.

Cite Data

Cao, Junyue, et al. Comprehensive single-cell transcriptional profiling of a multicellular organism. Science 357.6352 (2017): 661-667.