From 5abd3105d83fc08bbc0da71166989711df181ebd Mon Sep 17 00:00:00 2001 From: ChrisKent Date: Tue, 6 Aug 2024 12:00:45 +0100 Subject: [PATCH] Updated collections for hbv/600 and hbv/500 --- primerschemes/hbv/500/v1.0.0/README.md | 3 +- primerschemes/hbv/500/v1.0.0/info.json | 61 ++++++++++++++----------- primerschemes/hbv/500/v1.1.0/README.md | 1 + primerschemes/hbv/500/v1.1.0/info.json | 61 ++++++++++++++----------- primerschemes/hbv/600/v2.0.0/README.md | 3 +- primerschemes/hbv/600/v2.0.0/info.json | 62 +++++++++++++++----------- 6 files changed, 111 insertions(+), 80 deletions(-) diff --git a/primerschemes/hbv/500/v1.0.0/README.md b/primerschemes/hbv/500/v1.0.0/README.md index 1d15683..95c9be1 100644 --- a/primerschemes/hbv/500/v1.0.0/README.md +++ b/primerschemes/hbv/500/v1.0.0/README.md @@ -35,7 +35,8 @@ Schemes generated for the Hepatitis B virus (hbv) "articbedversion": "v3.0", "collections": [ "QUICK-LAB", - "WHOLE-GENOME" + "WHOLE-GENOME", + "CLINICAL-ISOLATES" ], "links": { "protocols": [], diff --git a/primerschemes/hbv/500/v1.0.0/info.json b/primerschemes/hbv/500/v1.0.0/info.json index 9569d99..78d270c 100644 --- a/primerschemes/hbv/500/v1.0.0/info.json +++ b/primerschemes/hbv/500/v1.0.0/info.json @@ -1,27 +1,36 @@ { - "ampliconsize": 500, - "schemeversion": "v1.0.0", - "schemename": "hbv", - "primer_bed_md5": "c49dd3634bb727c6e04dba56236c5352", - "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", - "status": "deprecated", - "citations": [], - "authors": ["quick lab", "artic network"], - "algorithmversion": "primaldigest:1.1.2", - "species": [10407], - "license": "CC-BY-4.0", - "primerclass": "primerschemes", - "infoschema": "v2.0.0", - "articbedversion": "v3.0", - "collections": ["QUICK-LAB", "WHOLE-GENOME"], - "links": { - "protocols": [], - "validation": [], - "homepage": [], - "vendors": [], - "misc": [] - }, - "description": "Schemes generated for the Hepatitis B virus (hbv)", - "derivedfrom": null, - "contactinfo": null -} + "ampliconsize": 500, + "schemeversion": "v1.0.0", + "schemename": "hbv", + "primer_bed_md5": "c49dd3634bb727c6e04dba56236c5352", + "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", + "status": "deprecated", + "citations": [], + "authors": [ + "quick lab", + "artic network" + ], + "algorithmversion": "primaldigest:1.1.2", + "species": [ + 10407 + ], + "license": "CC-BY-4.0", + "primerclass": "primerschemes", + "infoschema": "v2.0.0", + "articbedversion": "v3.0", + "collections": [ + "QUICK-LAB", + "WHOLE-GENOME", + "CLINICAL-ISOLATES" + ], + "links": { + "protocols": [], + "validation": [], + "homepage": [], + "vendors": [], + "misc": [] + }, + "description": "Schemes generated for the Hepatitis B virus (hbv)", + "derivedfrom": null, + "contactinfo": null +} \ No newline at end of file diff --git a/primerschemes/hbv/500/v1.1.0/README.md b/primerschemes/hbv/500/v1.1.0/README.md index f4148f8..b923576 100644 --- a/primerschemes/hbv/500/v1.1.0/README.md +++ b/primerschemes/hbv/500/v1.1.0/README.md @@ -34,6 +34,7 @@ Schemes generated for the Hepatitis B virus (hbv) "infoschema": "v2.0.0", "articbedversion": "v3.0", "collections": [ + "CLINICAL-ISOLATES", "QUICK-LAB", "WHOLE-GENOME" ], diff --git a/primerschemes/hbv/500/v1.1.0/info.json b/primerschemes/hbv/500/v1.1.0/info.json index a29aa14..f307b72 100644 --- a/primerschemes/hbv/500/v1.1.0/info.json +++ b/primerschemes/hbv/500/v1.1.0/info.json @@ -1,27 +1,36 @@ { - "ampliconsize": 500, - "schemeversion": "v1.1.0", - "schemename": "hbv", - "primer_bed_md5": "4700089ebc8db0b88296512dcfc47818", - "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", - "status": "deprecated", - "citations": [], - "authors": ["quick lab", "artic network"], - "algorithmversion": "primaldigest:1.1.3", - "species": [10407], - "license": "CC-BY-4.0", - "primerclass": "primerschemes", - "infoschema": "v2.0.0", - "articbedversion": "v3.0", - "collections": ["QUICK-LAB", "WHOLE-GENOME"], - "links": { - "protocols": [], - "validation": [], - "homepage": [], - "vendors": [], - "misc": [] - }, - "description": "Schemes generated for the Hepatitis B virus (hbv)", - "derivedfrom": null, - "contactinfo": null -} + "ampliconsize": 500, + "schemeversion": "v1.1.0", + "schemename": "hbv", + "primer_bed_md5": "4700089ebc8db0b88296512dcfc47818", + "reference_fasta_md5": "7612eab3e2389215206ae17187da1791", + "status": "deprecated", + "citations": [], + "authors": [ + "quick lab", + "artic network" + ], + "algorithmversion": "primaldigest:1.1.3", + "species": [ + 10407 + ], + "license": "CC-BY-4.0", + "primerclass": "primerschemes", + "infoschema": "v2.0.0", + "articbedversion": "v3.0", + "collections": [ + "CLINICAL-ISOLATES", + "QUICK-LAB", + "WHOLE-GENOME" + ], + "links": { + "protocols": [], + "validation": [], + "homepage": [], + "vendors": [], + "misc": [] + }, + "description": "Schemes generated for the Hepatitis B virus (hbv)", + "derivedfrom": null, + "contactinfo": null +} \ No newline at end of file diff --git a/primerschemes/hbv/600/v2.0.0/README.md b/primerschemes/hbv/600/v2.0.0/README.md index e45c2aa..d335979 100644 --- a/primerschemes/hbv/600/v2.0.0/README.md +++ b/primerschemes/hbv/600/v2.0.0/README.md @@ -35,8 +35,9 @@ A 600bp high overlap scheme for HBV. Using phylogenetic downsampling to reduce b "infoschema": "v2.0.0", "articbedversion": "v3.0", "collections": [ + "WHOLE-GENOME", "QUICK-LAB", - "WHOLE-GENOME" + "CLINICAL-ISOLATES" ], "links": { "protocols": [], diff --git a/primerschemes/hbv/600/v2.0.0/info.json b/primerschemes/hbv/600/v2.0.0/info.json index 7825bbf..537f93f 100644 --- a/primerschemes/hbv/600/v2.0.0/info.json +++ b/primerschemes/hbv/600/v2.0.0/info.json @@ -1,27 +1,37 @@ { - "ampliconsize": 600, - "schemeversion": "v2.0.0", - "schemename": "hbv", - "primer_bed_md5": "b87ea41cdc94f223cd4cc836f6d333eb", - "reference_fasta_md5": "b01f2e0109981e19316692538f57b4d9", - "status": "tested", - "citations": [], - "authors": ["Dr Sheila Lumley", "Chris Kent", "Quick Lab"], - "algorithmversion": "primalscheme3:1.1.3", - "species": [10407], - "license": "CC BY-SA 4.0", - "primerclass": "primerschemes", - "infoschema": "v2.0.0", - "articbedversion": "v3.0", - "collections": ["QUICK-LAB", "WHOLE-GENOME"], - "links": { - "protocols": [], - "validation": [], - "homepage": [], - "vendors": [], - "misc": [] - }, - "description": "A 600bp high overlap scheme for HBV. Using phylogenetic downsampling to reduce bias in under represented HBV Clades", - "derivedfrom": null, - "contactinfo": null -} + "ampliconsize": 600, + "schemeversion": "v2.0.0", + "schemename": "hbv", + "primer_bed_md5": "b87ea41cdc94f223cd4cc836f6d333eb", + "reference_fasta_md5": "b01f2e0109981e19316692538f57b4d9", + "status": "tested", + "citations": [], + "authors": [ + "Dr Sheila Lumley", + "Chris Kent", + "Quick Lab" + ], + "algorithmversion": "primalscheme3:1.1.3", + "species": [ + 10407 + ], + "license": "CC BY-SA 4.0", + "primerclass": "primerschemes", + "infoschema": "v2.0.0", + "articbedversion": "v3.0", + "collections": [ + "WHOLE-GENOME", + "QUICK-LAB", + "CLINICAL-ISOLATES" + ], + "links": { + "protocols": [], + "validation": [], + "homepage": [], + "vendors": [], + "misc": [] + }, + "description": "A 600bp high overlap scheme for HBV. Using phylogenetic downsampling to reduce bias in under represented HBV Clades", + "derivedfrom": null, + "contactinfo": null +} \ No newline at end of file