diff --git a/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/README.md b/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/README.md index 73c1dec..6d671ef 100644 --- a/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/README.md +++ b/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/README.md @@ -15,7 +15,7 @@ Clade I genomes were aligned to clade I reference and Clade II genomes were alig "ampliconsize": 2500, "schemeversion": "v1.0.0-cladeiia", "schemename": "artic-inrb-mpox", - "primer_bed_md5": "2556a0f24a91ac35433b992034baa043", + "primer_bed_md5": "c28678288dc9e4234c3aef5336820345", "reference_fasta_md5": "8b4f1769899f040644b129758faf176c", "status": "draft", "citations": [], @@ -34,8 +34,8 @@ Clade I genomes were aligned to clade I reference and Clade II genomes were alig "articbedversion": "v3.0", "collections": [ "WHOLE-GENOME", - "ARTIC", - "QUICK-LAB" + "QUICK-LAB", + "ARTIC" ], "links": { "protocols": [], diff --git a/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/info.json b/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/info.json index 0157ce8..e870b5f 100644 --- a/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/info.json +++ b/primerschemes/artic-inrb-mpox/2500/v1.0.0-cladeiia/info.json @@ -1,27 +1,37 @@ { - "ampliconsize": 2500, - "schemeversion": "v1.0.0-cladeiia", - "schemename": "artic-inrb-mpox", - "primer_bed_md5": "2556a0f24a91ac35433b992034baa043", - "reference_fasta_md5": "8b4f1769899f040644b129758faf176c", - "status": "draft", - "citations": [], - "authors": ["ARTIC network", "INRB", "Quick Lab"], - "algorithmversion": "primalscheme3", - "species": [10244], - "license": "CC BY-SA 4.0", - "primerclass": "primerschemes", - "infoschema": "v2.0.0", - "articbedversion": "v3.0", - "collections": ["WHOLE-GENOME", "ARTIC", "QUICK-LAB"], - "links": { - "protocols": [], - "validation": [], - "homepage": [], - "vendors": [], - "misc": [] - }, - "description": "Clade I genomes were aligned to clade I reference and Clade II genomes were aligned to clade II reference with squirrel. The two clades were consensus aligned using MAFFT and the alignment was used as the input for primalscheme3. BED files for each clade using primalbedtools", - "derivedfrom": null, - "contactinfo": null -} + "ampliconsize": 2500, + "schemeversion": "v1.0.0-cladeiia", + "schemename": "artic-inrb-mpox", + "primer_bed_md5": "c28678288dc9e4234c3aef5336820345", + "reference_fasta_md5": "8b4f1769899f040644b129758faf176c", + "status": "draft", + "citations": [], + "authors": [ + "ARTIC network", + "INRB", + "Quick Lab" + ], + "algorithmversion": "primalscheme3", + "species": [ + 10244 + ], + "license": "CC BY-SA 4.0", + "primerclass": "primerschemes", + "infoschema": "v2.0.0", + "articbedversion": "v3.0", + "collections": [ + "WHOLE-GENOME", + "QUICK-LAB", + "ARTIC" + ], + "links": { + "protocols": [], + "validation": [], + "homepage": [], + "vendors": [], + "misc": [] + }, + "description": "Clade I genomes were aligned to clade I reference and Clade II genomes were aligned to clade II reference with squirrel. The two clades were consensus aligned using MAFFT and the alignment was used as the input for primalscheme3. BED files for each clade using primalbedtools", + "derivedfrom": null, + "contactinfo": null +} \ No newline at end of file