gentoo

FROM gentoo/stage3-amd64
ARG RSYNC_PROXY
ARG HTTP_PROXY
RUN gcc-config 1
RUN mkdir -p /usr/portage
RUN emerge-webrsync
RUN echo 'EMERGE_DEFAULT_OPTS="--quiet --quiet-fail=n"' >> /etc/portage/make.conf
RUN echo 'MAKEOPTS="-j16 -l32"' >> /etc/portage/make.conf
# RUN sed -i 's/gentoo.org/us.&/' /usr/share/portage/config/repos.conf
RUN emerge --quiet --sync
#cannot verify trilinos.org's certificate
RUN echo 'FETCHCOMMAND="wget -c -v -t 1 --passive-ftp --no-check-certificate --timeout=60 -O \"\${DISTDIR}/\${FILE}\" \"\${URI}\""' >> /etc/portage/make.conf 
RUN emerge layman flaggie dev-python/pip ccache
RUN layman -S
RUN layman -a science
env EPYTHON=python2.7
RUN flaggie dev-libs/tut +~amd64
RUN flaggie sci-libs/hypre +~amd64 +mpi -openmp
RUN flaggie dev-libs/boost-mpl-cartesian_product +~amd64
RUN flaggie sci-libs/trilinos +~amd64 +netcdf
RUN flaggie dev-libs/pegtl +~amd64
RUN flaggie dev-cpp/random123 +~amd64
RUN flaggie sys-cluster/charm +~amd64 +mpi
RUN flaggie sci-libs/h5part +~amd64
RUN flaggie dev-cpp/pstreams +~amd64
RUN flaggie sci-libs/netcdf +mpi
RUN flaggie virtual/lapacke::science +~amd64
RUN flaggie virtual/lapack::science +~amd64
RUN flaggie virtual/blas::science +~amd64
RUN flaggie sci-libs/lapacke-reference::science +~amd64
RUN flaggie sci-libs/lapack-reference::science +~amd64
RUN flaggie sci-libs/blas-reference::science +~amd64
RUN flaggie app-admin/eselect::science +~amd64
RUN flaggie dev-util/mad-numdiff::science +~amd64
RUN flaggie virtual/mpi +romio
RUN flaggie sci-libs/hdf5 +mpi
RUN flaggie sys-cluster/openmpi +romio
RUN flaggie sys-devel/llvm +clang
RUN emerge -1 clang
RUN emerge -1 boost sys-cluster/charm
RUN emerge doxygen

RUN flaggie sci-physics/quinoa-9999 +**

RUN emerge --onlydeps quinoa 

RUN groupadd -r quinoa
RUN useradd -r -m -g quinoa quinoa
USER quinoa
ENV PATH=/usr/lib64/ccache/bin${PATH:+:}${PATH}
ENV PATH=/usr/lib64/trilinos/bin${PATH:+:}${PATH}
WORKDIR /home/quinoa
RUN pip install --user codecov coverxygen