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revdep.yaml
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# This workflow creates many jobs, run only when a branch is created
on:
push:
branches:
- "revdep*" # never run automatically on main branch
name: revdep
jobs:
matrix:
runs-on: ubuntu-22.04
outputs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
name: Collect revdeps
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
# prevent rgl issues because no X11 display is available
RGL_USE_NULL: true
# Begin custom: env vars
# End custom: env vars
steps:
- name: Check rate limits
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash
- uses: actions/checkout@v3
# FIXME: Avoid reissuing succesful jobs
# https://docs.github.com/en/free-pro-team@latest/rest/reference/actions#list-jobs-for-a-workflow-run
# https://docs.github.com/en/free-pro-team@latest/rest/reference/actions#workflow-runs
- id: set-matrix
run: |
package <- read.dcf("DESCRIPTION")[, "Package"][[1]]
deps <- tools:::package_dependencies(package, reverse = TRUE, which = c("Depends", "Imports", "LinkingTo", "Suggests"))[[1]]
json <- paste0(
'{"package":[',
paste0('"', deps, '"', collapse = ","),
']}'
)
writeLines(json)
writeLines(paste0("matrix=", json), Sys.getenv("GITHUB_OUTPUT"))
shell: Rscript {0}
check-matrix:
runs-on: ubuntu-22.04
needs: matrix
steps:
- name: Install json2yaml
run: |
sudo npm install -g json2yaml
- name: Check matrix definition
run: |
matrix='${{ needs.matrix.outputs.matrix }}'
echo $matrix
echo $matrix | jq .
echo $matrix | json2yaml
R-CMD-check:
needs: matrix
runs-on: ubuntu-22.04
name: ${{ matrix.package }}
# Begin custom: services
# End custom: services
strategy:
fail-fast: false
matrix: ${{fromJson(needs.matrix.outputs.matrix)}}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
# prevent rgl issues because no X11 display is available
RGL_USE_NULL: true
# Begin custom: env vars
# End custom: env vars
steps:
- name: Check rate limits
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash
- uses: actions/checkout@v3
# Begin custom: before install
# End custom: before install
- name: Use RSPM
run: |
mkdir -p /home/runner/work/_temp/Library
echo 'local({release <- system2("lsb_release", "-sc", stdout = TRUE); options(repos=c(CRAN = paste0("https://packagemanager.rstudio.com/all/__linux__/", release, "/latest")), HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRversion(), R.version$platform, R.version$arch, R.version$os)))}); .libPaths("/home/runner/work/_temp/Library")' | sudo tee /etc/R/Rprofile.site
- name: Install remotes
run: |
if (!requireNamespace("curl", quietly = TRUE)) install.packages("curl")
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
shell: Rscript {0}
- uses: r-lib/actions/setup-pandoc@v2
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
sudo apt-get update -y
Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04")); package <- "${{ matrix.package }}"; deps <- tools::package_dependencies(package, which = "Suggests")[[1]]; lapply(c(package, deps), function(x) { writeLines(remotes::system_requirements("ubuntu", "22.04", package = x)) })' | sort | uniq > .github/deps.sh
cat .github/deps.sh
sudo sh < .github/deps.sh
- name: Install package
run: |
package <- "${{ matrix.package }}"
install.packages(package, dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}
- name: Session info old
run: |
options(width = 100)
if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
# Begin custom: after install
# End custom: after install
- name: Check old
env:
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_SYSTEM_CLOCK_: false
_R_CHECK_FUTURE_FILE_TIMESTAMPS_: false
# Avoid downloading binary package from RSPM
run: |
package <- "${{ matrix.package }}"
options(HTTPUserAgent = "gha")
path <- download.packages(package, destdir = ".github")[, 2]
print(path)
dir <- file.path("revdep", package)
dir.create(dir, showWarnings = FALSE, recursive = TRUE)
check <- rcmdcheck::rcmdcheck(path, args = c("--no-manual", "--as-cran"), error_on = "never", check_dir = file.path(dir, "check"))
file.rename(file.path(dir, "check"), file.path(dir, "old"))
saveRDS(check, file.path(dir, "old.rds"))
shell: Rscript {0}
- name: Install local package
run: |
remotes::install_local(".", force = TRUE)
shell: Rscript {0}
- name: Session info new
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- name: Check new
env:
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_SYSTEM_CLOCK_: false
_R_CHECK_FUTURE_FILE_TIMESTAMPS_: false
run: |
package <- "${{ matrix.package }}"
path <- dir(".github", pattern = paste0("^", package), full.names = TRUE)[[1]]
print(path)
dir <- file.path("revdep", package)
check <- rcmdcheck::rcmdcheck(path, args = c("--no-manual", "--as-cran"), error_on = "never", check_dir = file.path(dir, "check"))
file.rename(file.path(dir, "check"), file.path(dir, "new"))
saveRDS(check, file.path(dir, "new.rds"))
shell: Rscript {0}
- name: Compare
run: |
package <- "${{ matrix.package }}"
dir <- file.path("revdep", package)
old <- readRDS(file.path(dir, "old.rds"))
new <- readRDS(file.path(dir, "new.rds"))
compare <- rcmdcheck::compare_checks(old, new)
compare
cmp <- compare$cmp
if (!identical(cmp[cmp$which == "old", "output"], cmp[cmp$which == "new", "output"])) {
if (!requireNamespace("waldo", quietly = TRUE)) install.packages("waldo")
print(waldo::compare(old, new))
stop("Check output differs.")
}
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ matrix.package }}-results
path: revdep/${{ matrix.package }}
- name: Check rate limits
if: always()
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash