build.yml

name: Pull Request basic build checks

on:
  push:
    branches:
    - main
    - 'v*'
    tags:
    - '*'
  pull_request:


jobs:
  build:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2

      - name: Set up python
        id: setup-python
        uses: actions/setup-python@v2
        with:
          python-version: '3.10'
          cache: 'pip'

      - name: Install requirements
        run: |
          mkdir ${GITHUB_WORKSPACE}/.casa
          echo "datapath=['${GITHUB_WORKSPACE}/.casa/']; measurespath=datapath[0]; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
          export CASASITECONFIG=$GITHUB_WORKSPACE/config.py
          pip install -r requirements.txt
          pip install -U --pre astroquery # required to be separate; requirements.txt does not respect --pre

      - name: Export notebooks
        run: |
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectMaskExample_v4p1.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python

      - name: Prepare public folder
        id: folder
        run: |
          cp spectral_fitting/*.html docs
          cp casa_to_spectralcube_guide/*.html docs
          cp masking_and_moments/*.html docs
          cp parallel_spectral_fitting/*.html docs
          cp *.html docs

      - name: Build with Jekyll
        uses: actions/jekyll-build-pages@v1
        with:
          source: docs
          destination: docs/_site

      - name: Setup Pages
        id: pages
        uses: actions/configure-pages@v3

      - name: Upload artifact
        uses: actions/upload-pages-artifact@v2
        with:
          path: docs