diff --git a/examples/outputs/demo_ED50boxplot.pdf b/examples/outputs/demo_ED50boxplot.pdf index f0398d9..2f746e8 100644 Binary files a/examples/outputs/demo_ED50boxplot.pdf and b/examples/outputs/demo_ED50boxplot.pdf differ diff --git a/examples/outputs/demo_ED50df.csv b/examples/outputs/demo_ED50df.csv index 0f4b230..1011e10 100644 --- a/examples/outputs/demo_ED50df.csv +++ b/examples/outputs/demo_ED50df.csv @@ -1,61 +1,61 @@ -"ED50","GroupingProperty","Site","Condition","Species","Genotype","Timepoint" -38.17,"Zugspitze_Nursery_Acropora germania_1_420","Zugspitze","Nursery","Acropora germania","1",420 -38.02,"Zugspitze_Nursery_Acropora germania_2_420","Zugspitze","Nursery","Acropora germania","2",420 -38.16,"Zugspitze_Nursery_Acropora germania_3_420","Zugspitze","Nursery","Acropora germania","3",420 -38.41,"Zugspitze_Nursery_Acropora germania_4_420","Zugspitze","Nursery","Acropora germania","4",420 -38.24,"Zugspitze_Nursery_Acropora germania_5_420","Zugspitze","Nursery","Acropora germania","5",420 -38.54,"Zugspitze_Nursery_Acropora germania_6_420","Zugspitze","Nursery","Acropora germania","6",420 -38.26,"Zugspitze_Nursery_Acropora germania_7_420","Zugspitze","Nursery","Acropora germania","7",420 -38.46,"Zugspitze_Nursery_Acropora germania_8_420","Zugspitze","Nursery","Acropora germania","8",420 -37.83,"Zugspitze_Nursery_Acropora germania_9_420","Zugspitze","Nursery","Acropora germania","9",420 -38.35,"Zugspitze_Nursery_Acropora germania_10_420","Zugspitze","Nursery","Acropora germania","10",420 -38.67,"Zugspitze_Wild_Acropora germania_1_420","Zugspitze","Wild","Acropora germania","1",420 -38.45,"Zugspitze_Wild_Acropora germania_2_420","Zugspitze","Wild","Acropora germania","2",420 -38.42,"Zugspitze_Wild_Acropora germania_3_420","Zugspitze","Wild","Acropora germania","3",420 -38.27,"Zugspitze_Wild_Acropora germania_4_420","Zugspitze","Wild","Acropora germania","4",420 -38.45,"Zugspitze_Wild_Acropora germania_5_420","Zugspitze","Wild","Acropora germania","5",420 -38.39,"Zugspitze_Wild_Acropora germania_6_420","Zugspitze","Wild","Acropora germania","6",420 -38.5,"Zugspitze_Wild_Acropora germania_7_420","Zugspitze","Wild","Acropora germania","7",420 -38.41,"Zugspitze_Wild_Acropora germania_8_420","Zugspitze","Wild","Acropora germania","8",420 -38.58,"Zugspitze_Wild_Acropora germania_9_420","Zugspitze","Wild","Acropora germania","9",420 -38.4,"Zugspitze_Wild_Acropora germania_10_420","Zugspitze","Wild","Acropora germania","10",420 -37.9,"Zugspitze_Nursery_Porites germania_1_420","Zugspitze","Nursery","Porites germania","1",420 -37.93,"Zugspitze_Nursery_Porites germania_2_420","Zugspitze","Nursery","Porites germania","2",420 -38.06,"Zugspitze_Nursery_Porites germania_3_420","Zugspitze","Nursery","Porites germania","3",420 -37.77,"Zugspitze_Nursery_Porites germania_4_420","Zugspitze","Nursery","Porites germania","4",420 -37.88,"Zugspitze_Nursery_Porites germania_5_420","Zugspitze","Nursery","Porites germania","5",420 -38.31,"Zugspitze_Nursery_Porites germania_6_420","Zugspitze","Nursery","Porites germania","6",420 -38.01,"Zugspitze_Nursery_Porites germania_7_420","Zugspitze","Nursery","Porites germania","7",420 -37.9,"Zugspitze_Nursery_Porites germania_8_420","Zugspitze","Nursery","Porites germania","8",420 -38.05,"Zugspitze_Nursery_Porites germania_9_420","Zugspitze","Nursery","Porites germania","9",420 -37.54,"Zugspitze_Nursery_Porites germania_10_420","Zugspitze","Nursery","Porites germania","10",420 -38.55,"Zugspitze_Wild_Porites germania_1_420","Zugspitze","Wild","Porites germania","1",420 -38.41,"Zugspitze_Wild_Porites germania_2_420","Zugspitze","Wild","Porites germania","2",420 -38.11,"Zugspitze_Wild_Porites germania_3_420","Zugspitze","Wild","Porites germania","3",420 -38.6,"Zugspitze_Wild_Porites germania_4_420","Zugspitze","Wild","Porites germania","4",420 -38.8,"Zugspitze_Wild_Porites germania_5_420","Zugspitze","Wild","Porites germania","5",420 -38.5,"Zugspitze_Wild_Porites germania_6_420","Zugspitze","Wild","Porites germania","6",420 -38.26,"Zugspitze_Wild_Porites germania_7_420","Zugspitze","Wild","Porites germania","7",420 -38.57,"Zugspitze_Wild_Porites germania_8_420","Zugspitze","Wild","Porites germania","8",420 -38.94,"Zugspitze_Wild_Porites germania_9_420","Zugspitze","Wild","Porites germania","9",420 -38.55,"Zugspitze_Wild_Porites germania_10_420","Zugspitze","Wild","Porites germania","10",420 -37.52,"Feldberg_Nursery_Porites germania_1_420","Feldberg","Nursery","Porites germania","1",420 -38.2,"Feldberg_Nursery_Porites germania_2_420","Feldberg","Nursery","Porites germania","2",420 -38.16,"Feldberg_Nursery_Porites germania_3_420","Feldberg","Nursery","Porites germania","3",420 -38.4,"Feldberg_Nursery_Porites germania_4_420","Feldberg","Nursery","Porites germania","4",420 -37.81,"Feldberg_Nursery_Porites germania_5_420","Feldberg","Nursery","Porites germania","5",420 -37.71,"Feldberg_Nursery_Porites germania_6_420","Feldberg","Nursery","Porites germania","6",420 -38.48,"Feldberg_Nursery_Porites germania_7_420","Feldberg","Nursery","Porites germania","7",420 -37.32,"Feldberg_Nursery_Porites germania_8_420","Feldberg","Nursery","Porites germania","8",420 -37.81,"Feldberg_Nursery_Porites germania_9_420","Feldberg","Nursery","Porites germania","9",420 -38.03,"Feldberg_Nursery_Porites germania_10_420","Feldberg","Nursery","Porites germania","10",420 -38.42,"Feldberg_Wild_Porites germania_1_420","Feldberg","Wild","Porites germania","1",420 -38.52,"Feldberg_Wild_Porites germania_2_420","Feldberg","Wild","Porites germania","2",420 -38.57,"Feldberg_Wild_Porites germania_3_420","Feldberg","Wild","Porites germania","3",420 -38.63,"Feldberg_Wild_Porites germania_4_420","Feldberg","Wild","Porites germania","4",420 -38.44,"Feldberg_Wild_Porites germania_5_420","Feldberg","Wild","Porites germania","5",420 -38.15,"Feldberg_Wild_Porites germania_6_420","Feldberg","Wild","Porites germania","6",420 -37.79,"Feldberg_Wild_Porites germania_7_420","Feldberg","Wild","Porites germania","7",420 -38.46,"Feldberg_Wild_Porites germania_8_420","Feldberg","Wild","Porites germania","8",420 -38.14,"Feldberg_Wild_Porites germania_9_420","Feldberg","Wild","Porites germania","9",420 -37.45,"Feldberg_Wild_Porites germania_10_420","Feldberg","Wild","Porites germania","10",420 +"ED50","GroupingProperty","Site","Condition","Species","Timepoint" +38.14,"Zugspitze_Nursery_Acropora germania_420_1","Zugspitze","Nursery","Acropora germania",420 +38.03,"Zugspitze_Nursery_Acropora germania_420_2","Zugspitze","Nursery","Acropora germania",420 +38.17,"Zugspitze_Nursery_Acropora germania_420_3","Zugspitze","Nursery","Acropora germania",420 +38.4,"Zugspitze_Nursery_Acropora germania_420_4","Zugspitze","Nursery","Acropora germania",420 +38.23,"Zugspitze_Nursery_Acropora germania_420_5","Zugspitze","Nursery","Acropora germania",420 +38.53,"Zugspitze_Nursery_Acropora germania_420_6","Zugspitze","Nursery","Acropora germania",420 +38.27,"Zugspitze_Nursery_Acropora germania_420_7","Zugspitze","Nursery","Acropora germania",420 +38.44,"Zugspitze_Nursery_Acropora germania_420_8","Zugspitze","Nursery","Acropora germania",420 +37.83,"Zugspitze_Nursery_Acropora germania_420_9","Zugspitze","Nursery","Acropora germania",420 +38.35,"Zugspitze_Nursery_Acropora germania_420_10","Zugspitze","Nursery","Acropora germania",420 +38.59,"Zugspitze_Wild_Acropora germania_420_1","Zugspitze","Wild","Acropora germania",420 +38.45,"Zugspitze_Wild_Acropora germania_420_2","Zugspitze","Wild","Acropora germania",420 +38.46,"Zugspitze_Wild_Acropora germania_420_3","Zugspitze","Wild","Acropora germania",420 +38.28,"Zugspitze_Wild_Acropora germania_420_4","Zugspitze","Wild","Acropora germania",420 +38.45,"Zugspitze_Wild_Acropora germania_420_5","Zugspitze","Wild","Acropora germania",420 +38.36,"Zugspitze_Wild_Acropora germania_420_6","Zugspitze","Wild","Acropora germania",420 +38.48,"Zugspitze_Wild_Acropora germania_420_7","Zugspitze","Wild","Acropora germania",420 +38.39,"Zugspitze_Wild_Acropora germania_420_8","Zugspitze","Wild","Acropora germania",420 +38.58,"Zugspitze_Wild_Acropora germania_420_9","Zugspitze","Wild","Acropora germania",420 +38.4,"Zugspitze_Wild_Acropora germania_420_10","Zugspitze","Wild","Acropora germania",420 +37.9,"Zugspitze_Nursery_Porites germania_420_1","Zugspitze","Nursery","Porites germania",420 +37.93,"Zugspitze_Nursery_Porites germania_420_2","Zugspitze","Nursery","Porites germania",420 +38.06,"Zugspitze_Nursery_Porites germania_420_3","Zugspitze","Nursery","Porites germania",420 +37.76,"Zugspitze_Nursery_Porites germania_420_4","Zugspitze","Nursery","Porites germania",420 +37.89,"Zugspitze_Nursery_Porites germania_420_5","Zugspitze","Nursery","Porites germania",420 +38.26,"Zugspitze_Nursery_Porites germania_420_6","Zugspitze","Nursery","Porites germania",420 +38.01,"Zugspitze_Nursery_Porites germania_420_7","Zugspitze","Nursery","Porites germania",420 +37.9,"Zugspitze_Nursery_Porites germania_420_8","Zugspitze","Nursery","Porites germania",420 +38.05,"Zugspitze_Nursery_Porites germania_420_9","Zugspitze","Nursery","Porites germania",420 +37.55,"Zugspitze_Nursery_Porites germania_420_10","Zugspitze","Nursery","Porites germania",420 +38.56,"Zugspitze_Wild_Porites germania_420_1","Zugspitze","Wild","Porites germania",420 +38.41,"Zugspitze_Wild_Porites germania_420_2","Zugspitze","Wild","Porites germania",420 +38.11,"Zugspitze_Wild_Porites germania_420_3","Zugspitze","Wild","Porites germania",420 +38.59,"Zugspitze_Wild_Porites germania_420_4","Zugspitze","Wild","Porites germania",420 +38.79,"Zugspitze_Wild_Porites germania_420_5","Zugspitze","Wild","Porites germania",420 +38.49,"Zugspitze_Wild_Porites germania_420_6","Zugspitze","Wild","Porites germania",420 +38.29,"Zugspitze_Wild_Porites germania_420_7","Zugspitze","Wild","Porites germania",420 +38.57,"Zugspitze_Wild_Porites germania_420_8","Zugspitze","Wild","Porites germania",420 +38.95,"Zugspitze_Wild_Porites germania_420_9","Zugspitze","Wild","Porites germania",420 +38.55,"Zugspitze_Wild_Porites germania_420_10","Zugspitze","Wild","Porites germania",420 +37.52,"Feldberg_Nursery_Porites germania_420_1","Feldberg","Nursery","Porites germania",420 +38.16,"Feldberg_Nursery_Porites germania_420_2","Feldberg","Nursery","Porites germania",420 +38.15,"Feldberg_Nursery_Porites germania_420_3","Feldberg","Nursery","Porites germania",420 +38.41,"Feldberg_Nursery_Porites germania_420_4","Feldberg","Nursery","Porites germania",420 +37.83,"Feldberg_Nursery_Porites germania_420_5","Feldberg","Nursery","Porites germania",420 +37.71,"Feldberg_Nursery_Porites germania_420_6","Feldberg","Nursery","Porites germania",420 +38.59,"Feldberg_Nursery_Porites germania_420_7","Feldberg","Nursery","Porites germania",420 +37.29,"Feldberg_Nursery_Porites germania_420_8","Feldberg","Nursery","Porites germania",420 +37.81,"Feldberg_Nursery_Porites germania_420_9","Feldberg","Nursery","Porites germania",420 +38.34,"Feldberg_Nursery_Porites germania_420_10","Feldberg","Nursery","Porites germania",420 +38.33,"Feldberg_Wild_Porites germania_420_1","Feldberg","Wild","Porites germania",420 +38.45,"Feldberg_Wild_Porites germania_420_2","Feldberg","Wild","Porites germania",420 +38.57,"Feldberg_Wild_Porites germania_420_3","Feldberg","Wild","Porites germania",420 +38.63,"Feldberg_Wild_Porites germania_420_4","Feldberg","Wild","Porites germania",420 +38.42,"Feldberg_Wild_Porites germania_420_5","Feldberg","Wild","Porites germania",420 +38.12,"Feldberg_Wild_Porites germania_420_6","Feldberg","Wild","Porites germania",420 +37.85,"Feldberg_Wild_Porites germania_420_7","Feldberg","Wild","Porites germania",420 +38.38,"Feldberg_Wild_Porites germania_420_8","Feldberg","Wild","Porites germania",420 +38.13,"Feldberg_Wild_Porites germania_420_9","Feldberg","Wild","Porites germania",420 +37.48,"Feldberg_Wild_Porites germania_420_10","Feldberg","Wild","Porites germania",420 diff --git a/examples/outputs/demo_summaryED50df.csv b/examples/outputs/demo_summaryED50df.csv index c71d01b..2b95ea6 100644 --- a/examples/outputs/demo_summaryED50df.csv +++ b/examples/outputs/demo_summaryED50df.csv @@ -1,7 +1,7 @@ -"Site","Condition","Species","Mean_ED50","SD_ED50","SE_ED50" -"Feldberg","Nursery","Porites germania",37.94,0.38,0.12 -"Feldberg","Wild","Porites germania",38.26,0.38,0.12 -"Zugspitze","Nursery","Acropora germania",38.24,0.21,0.07 -"Zugspitze","Nursery","Porites germania",37.94,0.2,0.06 -"Zugspitze","Wild","Acropora germania",38.45,0.11,0.03 -"Zugspitze","Wild","Porites germania",38.53,0.24,0.08 +"Site","Condition","Species","Timepoint","Mean_ED50","SD_ED50","SE_ED50","Conf_Int" +"Feldberg","Nursery","Porites germania",420,37.98,0.42,0.13,0.3 +"Feldberg","Wild","Porites germania",420,38.24,0.35,0.11,0.25 +"Zugspitze","Nursery","Acropora germania",420,38.24,0.21,0.07,0.15 +"Zugspitze","Nursery","Porites germania",420,37.93,0.19,0.06,0.14 +"Zugspitze","Wild","Acropora germania",420,38.44,0.09,0.03,0.07 +"Zugspitze","Wild","Porites germania",420,38.53,0.24,0.07,0.17 diff --git a/examples/outputs/demo_temprespcurve.pdf b/examples/outputs/demo_temprespcurve.pdf index 49f20d6..f1ebb7b 100644 Binary files a/examples/outputs/demo_temprespcurve.pdf and b/examples/outputs/demo_temprespcurve.pdf differ