New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Chicken etc. genomes #11

Open

mccalluc opened this issue Oct 19, 2017 · 0 comments

Member

mccalluc commented Oct 19, 2017

It looks like we're hard-coded for hg19 right now:

docker_igv_js/context/on_startup.py

Lines 7 to 14 in a0a8680

    
           with open("data/input.json") as f: 
        
               config_data = json.loads(f.read()) 
        
           tracks = [] 
        
           assembly = "hg19" 
        
           url_base = "https://s3.amazonaws.com/data.cloud.refinery-platform.org/data/igv-reference/{}/".format( 
        
               assembly 
        
           )

but it shouldn't be hard to

upload genome reference files to s3
update this to actually read the input.json

mccalluc self-assigned this

mccalluc removed their assignment

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment