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Segmentation fault with nanopore reads #23

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sivico26 opened this issue May 9, 2019 · 1 comment
Open

Segmentation fault with nanopore reads #23

sivico26 opened this issue May 9, 2019 · 1 comment

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@sivico26
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sivico26 commented May 9, 2019

Hi, I started using DSRC because I needed to save some space and the tool has been great so far with my fastq Illumina data.

I also have some basecalled Nanopore data in fastq that I want to compress, but DSRC tends to output segmentation fault with these files. I have several files with Mb or even Gb so spotted the crushing reads is difficult. I manage to get a couple of files though:

seg_fault_examples.tar.gz

I wonder if it is because of the read length, given that it is pretty heterogeneous compared with Illumina data. Do you think this is the case? How exactly the segmentation fault arise?

Thanks for developing such a great tool!

@RichardCorbett
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Hi folks.
I have the same issue here. I've been using dsrc on my illumina data to great effect, but I'm getting segmentation faults with my nanopore data.

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