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Reverse compliments #39

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jamesPet opened this issue Mar 14, 2023 · 2 comments
Open

Reverse compliments #39

jamesPet opened this issue Mar 14, 2023 · 2 comments
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@jamesPet
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Is there a flag to have famsa evaluate whether reverse complimenting a sequence will result in a better alignment score?
Similar to --adjustdirection within mafft.
@agudys
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agudys commented Apr 5, 2023

Hello! Sorry, but there is no such parameter in the current version of FAMSA.

@TerminatedGB
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Hello can this feature be added? Currently I have to use other programs due to this problem which really sucks as FAMSA is much faster

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@agudys @jamesPet @TerminatedGB