From 54f4f2918695c83ae687502c6f3af6309974a50a Mon Sep 17 00:00:00 2001 From: Lucas Date: Mon, 24 Jul 2017 18:46:12 +0200 Subject: [PATCH] removed script: gen_fastq.sh --> confused with get_fastq.sh --- scripts/gen_fastq.sh | 8 -------- scripts/get_fastq.sh | 6 +++--- 2 files changed, 3 insertions(+), 11 deletions(-) delete mode 100644 scripts/gen_fastq.sh mode change 100644 => 100755 scripts/get_fastq.sh diff --git a/scripts/gen_fastq.sh b/scripts/gen_fastq.sh deleted file mode 100644 index 3304563..0000000 --- a/scripts/gen_fastq.sh +++ /dev/null @@ -1,8 +0,0 @@ -#!/bin/bash - -LINES=10000 -OUT_1=test_1.fq -OUT_2=test_2.fq - -curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_1.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_1 -curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_2.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_2 diff --git a/scripts/get_fastq.sh b/scripts/get_fastq.sh old mode 100644 new mode 100755 index db6e9cb..4943dab --- a/scripts/get_fastq.sh +++ b/scripts/get_fastq.sh @@ -1,8 +1,8 @@ #!/bin/bash -LINES=10000 +LINES=400000 OUT_1=test_1.fq OUT_2=test_2.fq -curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024163/ERR024163_1.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_1 -curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024163/ERR024163_2.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_2 \ No newline at end of file +curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_1.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_1 +curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_2.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_2