From 078eedb32fd30bfa5495a4a033bf66d77a06a521 Mon Sep 17 00:00:00 2001
From: MarieLataretu <52002068+MarieLataretu@users.noreply.github.com>
Date: Wed, 22 May 2024 13:23:30 +0200
Subject: [PATCH] fixed path to primer bed file

---
 workflows/process/seqrs.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/process/seqrs.nf b/workflows/process/seqrs.nf
index 2b481e0..751c9af 100644
--- a/workflows/process/seqrs.nf
+++ b/workflows/process/seqrs.nf
@@ -14,7 +14,7 @@ process seqrs {
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.1/nCoV-2019.primer.bed --results V5-1-primer-to-repair-Ns-for_${name}.tsv -a 400
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.3.2_400/nCoV-2019.primer.bed --results V5.3.2_400-primer-to-repair-Ns-for_${name}.tsv -a 400
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V1200/nCoV-2019.bed --results V1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
-        seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.2.0_1200/nCoV-2019.bed --results V5.2.0_1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
+        seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.2.0_1200/nCoV-2019.primer.bed --results V5.2.0_1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
         """
     stub:
         """