diff --git a/.github/workflows/DryRun.yml b/.github/workflows/DryRun.yml index 5754277..eb801c9 100644 --- a/.github/workflows/DryRun.yml +++ b/.github/workflows/DryRun.yml @@ -29,3 +29,8 @@ jobs: run: | mkdir fast5_2 ./nextflow run poreCov.nf --fast5 fast5_2/ --nanopolish -stub -profile stub --cores 2 --max_cores 2 + - name: fastq samples dry run + run: | + touch barcode01.fastq.gz + printf "_id,Status\nsample,BC01\n" > sample.csv + ./nextflow run poreCov.nf --fastq barcode01.fastq.gz --samples sample.csv -stub -profile stub --cores 2 --max_cores 2