DESCRIPTION

Package: clustifyr
Title: Classifier for Single-cell RNA-seq Using Cell Clusters
Version: 1.17.2
Description: Package designed to aid in classifying cells from single-cell RNA sequencing data
    using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A 
    variety of correlation based methods and gene list enrichment methods are provided to assist cell
    type assignment.
Authors@R: 
    c(person(given = "Rui",
             family = "Fu",
             role = c("cre", "aut"), 
             email = "ray.sinensis@gmail.com"),
      person(given = "Kent",
             family = "Riemondy",
             role =  "aut",
             email = "kent.riemondy@gmail.com"),
      person(given = "Austin",
             family = "Gillen",
             role = "ctb",
             email = "austin.gillen@ucdenver.edu"),
      person(given = "Chengzhe",
             family = "Tian",
             role = "ctb",
             email = "Chengzhe.Tian@colorado.edu"),
      person(given = "Jay",
             family = "Hesselberth",
             role = "ctb",
             email = "jay.hesselberth@gmail.com"),
      person(given = "Yue",
             family = "Hao",
             role = "ctb",
             email = "haoyuethink@gmail.com"),
      person(given = "Michelle",
             family = "Daya",
             role = "ctb",
             email = "michelle.daya@ucdenver.edu"),
      person(given = "Sidhant",
             family = "Puntambekar",
             role = "ctb",
             email = "sidhantnp@yahoo.com"),
      person("RNA Bioscience Initiative", role = c("fnd", "cph"))
      )
License: MIT + file LICENSE
Depends: R (>= 2.10)
Imports: 
    cowplot,
    dplyr,
    entropy,
    fgsea,
    ggplot2,
    Matrix,
    rlang,
    scales,
    stringr,
    tibble,
    tidyr,
    stats,
    methods,
    SingleCellExperiment,
    SummarizedExperiment,
    SeuratObject,
    matrixStats,
    S4Vectors,
    proxy,
    httr,
    utils
Suggests:
    ComplexHeatmap,
    covr,
    knitr,
    rmarkdown,
    testthat,
    ggrepel,
    BiocStyle,
    BiocManager,
    remotes,
    shiny,
    gprofiler2,
    purrr,
    data.table,
    R.utils
biocViews: SingleCell, Annotation, Sequencing, Microarray, GeneExpression
BugReports: https://github.com/rnabioco/clustifyr/issues
URL: https://github.com/rnabioco/clustifyr,
    https://rnabioco.github.io/clustifyr/
VignetteBuilder: 
    knitr
ByteCompile: true
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LazyData: true
Config/Needs/website:
    pkgdown,
    rnabioco/rbitemplate