From 3868a48a58f154dbd50f40bb314495bfaf448df2 Mon Sep 17 00:00:00 2001 From: kwells4 Date: Fri, 12 May 2023 11:00:39 -0600 Subject: [PATCH] making compatable with older versions of dplyr --- R/import-vdj.R | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/R/import-vdj.R b/R/import-vdj.R index a0b7ba2b..2b2a7184 100644 --- a/R/import-vdj.R +++ b/R/import-vdj.R @@ -963,8 +963,7 @@ import_vdj <- function(input = NULL, vdj_dir = NULL, prefix = "", # left_join + mutate is much faster than valr::bed_intersect, probably due # to the extreme number of "chromosomes" vdj_muts <- dplyr::left_join( - mut_coords, vdj_coords, by = "contig_id", suffix = c("", ".seg"), - relationship = "many-to-many" + mut_coords, vdj_coords, by = "contig_id", suffix = c("", ".seg") ) vdj_muts <- dplyr::filter(