fix test warnings

rnabioco · Jun 19, 2023 · f76c26b · f76c26b
1 parent 99f1745
commit f76c26b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/R/calc-gene-usage.R b/R/calc-gene-usage.R
@@ -659,7 +659,7 @@ plot_gene_pairs <- function(input, data_col, chains, cluster_col = NULL,
   n_lab_dat$legend <- n_lab_dat$axis <- n_lab_dat$corner
 
   if ((!is.null(grp_col) || !is.null(clst_col)) && identical(method, "bar")) {
-    n_lab_dat$axis <- dplyr::rename(df_in, .n = .data$freq)
+    n_lab_dat$axis <- dplyr::rename(df_in, .n = "freq")
   }
 
   # Set common arguments

diff --git a/R/import-vdj.R b/R/import-vdj.R
@@ -313,7 +313,7 @@ import_vdj <- function(input = NULL, vdj_dir = NULL, prefix = "",
       # contigs that did not have any mutations will have NAs
       indel_ctigs <- purrr::map(
         indel_ctigs,
-        ~ mutate(.x, dplyr::across(all_of(indel_cols), tidyr::replace_na, 0))
+        ~ mutate(.x, dplyr::across(all_of(indel_cols), ~ tidyr::replace_na(.x, 0)))
       )
 
       contigs    <- indel_ctigs