update proj-3, fix atlas links, update pubs #28

	name: quarto build

	on:
	push:
	branches: main
	pull_request:
	branches: main

	permissions:
	contents: write

	jobs:
	build-deploy:
	runs-on: ubuntu-latest
	steps:
	- name: ✅ Check out repository
	uses: actions/checkout@v3

	- name: 🆀 Set up Quarto
	uses: quarto-dev/quarto-actions/setup@v2

	- name: 🔧 Install R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true
	r-version: 'renv'

	- name: 🔁 Install system dependencies
	run: \|
	sudo apt-get install libcurl4-openssl-dev
	sudo apt-get install libmagick++-dev
	sudo apt-get install libpoppler-cpp-dev

	- name: 🔁 Install R Dependencies
	uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 2

	- name: 🔁 Install Node.js and Yarn
	uses: actions/setup-node@v4
	with:
	node-version: '20'
	cache: 'yarn'

	- name: 🔁 Install JavaScript packages
	run: yarn install

	- name: 📝 Create CNAME file
	run: echo "lnsc-cell-browser.org" > CNAME

	- name: 🚀 Publish to GitHub Pages (and render)
	uses: quarto-dev/quarto-actions/publish@v2
	with:
	target: gh-pages
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions

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