diff --git a/_data/navbar.yml b/_data/navbar.yml index c000921..1827b5c 100644 --- a/_data/navbar.yml +++ b/_data/navbar.yml @@ -4,7 +4,7 @@ link: /about.html - name: Contact link: /contact.html -- name: Publications +- name: Publications and Citing link: /publications.html - name: Installation link: /installation.html diff --git a/_data/publications.yml b/_data/publications.yml index f9f70d9..d587907 100644 --- a/_data/publications.yml +++ b/_data/publications.yml @@ -1,70 +1,82 @@ - nickname: dj1 + section: pubs title: "Resolving DJ-I glyoxalase catalysis using mix-and-inject serial crystallography at a synchrotron" first_author: "Zielinski" authors: "**, Kara A.** and Cole Dolamore, Kevin M. Dalton, Nathan Smith, John Termini, Robert Henning, Vukica Srajer, Doeke R. Hekstra, Lois Pollack, Mark A. Wilson" url: https://www.biorxiv.org/content/10.1101/2024.07.19.604369v1 info: bioRxiv (preprint) - nickname: trxvaritional + section: pubs title: "Scaling and merging time-resolved Laue data with variational inference" first_author: "Zielinski" authors: "**, Kara A.** and Cole Dolamore, Harrison K. Wang, Robert W. Henning, Mark A. Wilson, Lois Pollack, Vukica Srajer, Doeke R. Hekstra, Kevin M. Dalton" url: https://www.biorxiv.org/content/10.1101/2024.07.30.605871v1 info: bioRxiv (preprint) - nickname: doublewilson + section: pubs title: "Sensitive detection of structural differences using a statistical framework for comparative crystallography" first_author: "Hekstra" authors: "**, Doeke R.** and Harrison K. Wang, Margaret A. Klureza, Jack B. Greisman, Kevin M. Dalton" url: https://www.biorxiv.org/content/10.1101/2024.07.22.604476v1 info: bioRxiv (preprint) - nickname: lauedials + section: cite title: "Laue-DIALS: open-source software for polychromatic X-ray diffraction data" first_author: "Hewitt" authors: "**, Rick A.** and Kevin M. Dalton, Derek Mendez, Harrison K. Wang, Margaret A. Klureza, Dennis E. Brookner, Jack B. Greisman, David McDonagh, Vukica Šrajer, Nicholas K. Sauter, Aaron S. Brewster, Doeke R. Hekstra" url: https://www.biorxiv.org/content/10.1101/2024.07.23.604358v1 info: bioRxiv (preprint) - nickname: jackdhfr + section: pubs title: "Perturbative diffraction methods resolve a conformational switch that facilitates a two-step enzymatic mechanism" first_author: "Greisman" authors: "**, Jack B.** and Kevin M. Dalton, Dennis E. Brookner, Margaret A. Klureza, Candice J. Sheehan, In-Sik Kim, Robert W. Henning, Silvia Russi, Doeke R. Hekstra" url: https://www.pnas.org/doi/abs/10.1073/pnas.2313192121 info: PNAS, 2024 - nickname: matchmaps + section: cite title: "MatchMaps: non-isomorphous difference maps for X-ray crystallography" first_author: "Brookner" authors: "**, Dennis E.** and Doeke R. Hekstra" url: https://journals.iucr.org/j/issues/2024/03/00/ei5112/index.html info: Journal of Applied Crystallography, 2024 - nickname: trxreview + section: pubs title: "Emerging Time-Resolved X-Ray Diffraction Approaches for Protein Dynamics" first_author: "Hekstra" authors: "**, Doeke R.**" url: https://www.annualreviews.org/content/journals/10.1146/annurev-biophys-111622-091155 info: Annu. Rev. Biophys., 2023 - nickname: scaling + section: pubs title: "Correcting systematic errors in diffraction data with modern scaling algorithms" first_author: "Aldama" authors: "**, Luis A** and Kevin M. Dalton, Doeke R. Hekstra" url: https://journals.iucr.org/d/issues/2023/09/00/qi5002/index.html info: Acta Crystallographica D, 2023 - nickname: neurips2022 + section: pubs title: "Online Inference of Structure Factor Amplitudes for Serial X-ray Crystallography" first_author: "Dalton" authors: "**, Kevin M.** and Doeke R. Hekstra" url: https://www.mlsb.io/papers_2022/Online_Inference_of_Structure_Factor_Amplitudes_for_Serial_X_ray_Crystallography.pdf info: Machine Learning for Structural Biology Workshop, NeurIPS 2022 - nickname: careless + section: cite title: "A unifying Bayesian framework for merging X-ray diffraction data" first_author: "Dalton" authors: "**, Kevin M.** and Jack B. Greisman, Doeke R. Hekstra" url: https://www.nature.com/articles/s41467-022-35280-8 info: Nature Communications, 2022 - nickname: rtsad + section: pubs title: Native SAD phasing at room temperature first_author: "Greisman" authors: "**, Jack B.** and Kevin M. Dalton, Candice J. Sheehan, Margaret A. Klureza, Igor Kurinov, Doeke R. Hekstra" url: https://doi.org/10.1107/S2059798322006799 info: Acta Crystallographica D, 2022 - nickname: rs + section: cite title: "*reciprocalspaceship*: a Python library for crystallographic data analysis" first_author: "Greisman" authors: "**, Jack B.** and Kevin M. Dalton, Doeke R. Hekstra" diff --git a/publications.md b/publications.md index fd3cad2..5117e19 100644 --- a/publications.md +++ b/publications.md @@ -3,16 +3,7 @@ title: Publications layout: content_page --- -# Publications -The following publications make use of RSS packages. If there's a paper we're missing, or you've recently published a paper using an RSS package, please [let us know!](/contact.html) - -{% for pub in site.data.publications %} - - [{{ pub.title }}]({{ pub.url}}), {{ pub.first_author }} et. al. *{{ pub.info }}* -{% endfor %} - ---- - -## How to cite +# Citing Reciprocal Space Station packages If you're making use of any RSS packages, amazing! Please cite them as follows: ### reciprocalspaceship @@ -44,3 +35,15 @@ If you're making use of any RSS packages, amazing! Please cite them as follows: ### rs-booster [Cite GitHub directly](https://github.com/rs-station/rs-booster) + + +# RSS in other publications +The following publications explore, expand upon, or apply RSS packages. If there's a paper we're missing, or you've recently published a paper using an RSS package, please [let us know!](/contact.html) + +{% for pub in site.data.publications %} +{% if pub.section == "pubs" %} + - [{{ pub.title }}]({{ pub.url}}), {{ pub.first_author }} et. al. *{{ pub.info }}* +{% endif %} +{% endfor %} + +--- \ No newline at end of file