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environment.yml
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environment.yml
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name: barcoder
channels:
- conda-forge
- bioconda
- defaults
- bird
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- asttokens=2.4.1=pyhd8ed1ab_0
- aws-c-auth=0.7.14=h70caa3e_3
- aws-c-cal=0.6.9=h14ec70c_3
- aws-c-common=0.9.12=hd590300_0
- aws-c-compression=0.2.17=h572eabf_8
- aws-c-event-stream=0.4.1=h17cd1f3_5
- aws-c-http=0.8.0=hc6da83f_5
- aws-c-io=0.14.3=h3c8c088_1
- aws-c-mqtt=0.10.1=h0ef3971_3
- aws-c-s3=0.5.0=hb337f33_1
- aws-c-sdkutils=0.1.14=h572eabf_0
- aws-checksums=0.1.17=h572eabf_7
- aws-crt-cpp=0.26.1=h0637f07_8
- aws-sdk-cpp=1.11.242=h65f022c_0
- biopython=1.83=py310h2372a71_0
- bowtie=1.3.1=py310h7b97f60_6
- bzip2=1.0.8=hd590300_5
- c-ares=1.26.0=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- comm=0.2.1=pyhd8ed1ab_0
- debugpy=1.8.0=py310hc6cd4ac_1
- decorator=5.1.1=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- gflags=2.2.2=he1b5a44_1004
- glog=0.6.0=h6f12383_0
- icu=73.2=h59595ed_0
- importlib-metadata=7.0.1=pyha770c72_0
- importlib_metadata=7.0.1=hd8ed1ab_0
- intervaltree=3.1.0=pyhd8ed1ab_1
- ipykernel=6.29.1=pyhd33586a_0
- ipython=8.21.0=pyh707e725_0
- jedi=0.19.1=pyhd8ed1ab_0
- jupyter_client=8.6.0=pyhd8ed1ab_0
- jupyter_core=5.7.1=py310hff52083_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- libabseil=20230802.1=cxx17_h59595ed_0
- libarrow=15.0.0=he2c5238_2_cpu
- libarrow-acero=15.0.0=h59595ed_2_cpu
- libarrow-dataset=15.0.0=h59595ed_2_cpu
- libarrow-flight=15.0.0=hdc44a87_2_cpu
- libarrow-flight-sql=15.0.0=hfbc7f12_2_cpu
- libarrow-gandiva=15.0.0=hacb8726_2_cpu
- libarrow-substrait=15.0.0=hfbc7f12_2_cpu
- libblas=3.9.0=21_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=21_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.5.0=hca28451_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libgomp=13.2.0=h807b86a_5
- libgoogle-cloud=2.12.0=hef10d8f_5
- libgrpc=1.60.0=h74775cd_1
- libhwloc=2.9.3=default_h554bfaf_1009
- libiconv=1.17=hd590300_2
- liblapack=3.9.0=21_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libnghttp2=1.58.0=h47da74e_1
- libnl=3.9.0=hd590300_0
- libnsl=2.0.1=hd590300_0
- libnuma=2.0.16=h0b41bf4_1
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libparquet=15.0.0=h352af49_2_cpu
- libprotobuf=4.25.1=hf27288f_1
- libre2-11=2023.06.02=h7a70373_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.44.2=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_5
- libthrift=0.19.0=hb90f79a_1
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.5=h232c23b_0
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=hcb278e6_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mdurl=0.1.2=pyhd8ed1ab_0
- ncurses=6.4=h59595ed_2
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- numpy=1.26.4=py310hb13e2d6_0
- openssl=3.2.1=hd590300_0
- orc=1.9.2=h7829240_1
- packaging=23.2=pyhd8ed1ab_0
- pandas=2.2.0=py310hcc13569_0
- parso=0.8.3=pyhd8ed1ab_0
- perl=5.32.1=7_hd590300_perl5
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pip=24.0=pyhd8ed1ab_0
- platformdirs=4.2.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- psutil=5.9.8=py310h2372a71_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyarrow=15.0.0=py310hf9e7431_2_cpu
- pygments=2.17.2=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysam=0.22.0=py310h41dec4a_0
- python=3.10.13=hd12c33a_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.4=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pytz=2024.1=pyhd8ed1ab_0
- pyzmq=25.1.2=py310h795f18f_0
- rdma-core=50.0=hd3aeb46_0
- re2=2023.06.02=h2873b5e_0
- readline=8.2=h8228510_1
- rich=13.7.0=pyhd8ed1ab_0
- s2n=1.4.3=h06160fa_0
- setuptools=69.0.3=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h9fff704_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- tbb=2021.11.0=h00ab1b0_1
- tk=8.6.13=noxft_h4845f30_101
- tornado=6.3.3=py310h2372a71_1
- traitlets=5.14.1=pyhd8ed1ab_0
- typing_extensions=4.9.0=pyha770c72_0
- tzdata=2024a=h0c530f3_0
- ucx=1.15.0=h75e419f_3
- wcwidth=0.2.13=pyhd8ed1ab_0
- wheel=0.42.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zeromq=4.3.5=h59595ed_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
prefix: /home/ryandward/.conda/envs/barcoder