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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Canadian NeuroInfrastructure 2018</title>
<meta name="description" content="A framework for easily creating beautiful presentations using HTML">
<meta name="author" content="Hakim El Hattab">
<meta name="apple-mobile-web-app-capable" content="yes" />
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</head>
<body>
<div class="reveal">
<!-- Any section element inside of this container is displayed as a slide -->
<div class="slides">
<!-- Canadian Brain Informatics Infrastructure-->
<section data-background="images/brain-background.png">
<h1 style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;">INCF 2018</h1>
<table class="reveal">
<tr>
<td style="vertical-align: middle">
<h4 style="padding-bottom:0px; margin-bottom:0px; text-shadow:
-1px -1px 0 #000,
1px -1px 0 #000,
-1px 1px 0 #000,
1px 1px 0 #000;" align="center"><font color="yellow"> Canadian Brain Informatics Infrastructure</h4>
</td>
</tr></table>
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"align="center"><small>Nobel Forum - Stockholm - April 24, 2018</small></p>
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;" align="center"><small>Samir Das<br>Associate Director of Research Software Development</small></p>
<p style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;" align="center"><small><b>McGill Centre for Integrative Neuroscience</b><br><b>Montreal Neurological Institute</b></small></p>
<table class="reveal">
<tr>
<td width="40%" style="vertical-align: middle">
<img src="images/MCIN.png" style="border: 0">
</td>
<td width="15%" style="vertical-align: middle">
<img src="images/Neuro.png" style="border: 0">
</td>
<td width="35%" style="vertical-align: middle">
<img src="images/ludmer-new-white.png" style="border: 0">
</td>
</tr></table>
</section>
<!-- The Canadian Landscape-->
<section data-transition="fade">
<!-- CONP -->
<section data-background="images/CONP.png" data-background-size="100%">
</section>
<!-- TOSI -->
<section data-transition="zoom">
<h2>TOSI</h2>
<table class="reveal">
<tr>
<td width="47%" style="vertical-align: middle">
<img src="images/Nature_open_science.png">
</td>
<td width="53%" style="vertical-align: middle">
<img src="images/Open_science.png">
</td></tr></table>
</section>
<!-- HBHL -->
<section data-background="images/HBHL.png" data-background-size="100%">
</section>
<!-- Compute Canada -->
<section data-background="images/Compute_Canada.png" data-background-size="100%">
</section>
<section data-transition="fade">
<img src="images/CBRAIN_hours_old.png">
</section>
<section data-transition="fade">
<img src="images/Logos.jpg">
</section>
</section>
<!-- MNI ecosystem menu/summary-->
<section>
<section data-background="images/mni_eco_info_5.jpg" data-background-size="100%">
</section>
<!-- MNI PAPER -->
<section data-transition="fade">
<a href="https://www.researchgate.net/publication/281780543_The_MNI_data-sharing_and_processing_ecosystem" target="_blank"><img src="images/MNI_ecosystem_paper.png"></a>
</section>
<!--
<section id="fragments">
<h2><font color="12a3d8">What’s involved?</font></h2>
<p>
<span class="fragment">Longitudinal Acquisition, Storage and Curation, </span>
<span class="fragment"><font color="f27c30">Interoperability, Reproducibility</font>, Transfer, Anonymization, </span>
<span class="fragment">Security, Privacy, Ethics, APIs, </span>
<span class="fragment">Validation, Quality Control, Protocol Checking, </span>
<span class="fragment">Preprocessing, Analysis, HPC, </span>
<span class="fragment">Provenance, Ontological Standarization, <font color="f27c30">Data Harmonization</font>, </span>
<span class="fragment">Upgrades, Maintenance, Bug Fixes, </span>
<span class="fragment">User Interface, Javascript, Bootstrap,</span>
<span class="fragment">Tracking, <font color="f27c30">Extensibility</font>, </span>
<span class="fragment">Data Management, Summary Statistics, </span>
<span class="fragment">Workflows, Development, Tool Integration, </span>
<span class="fragment"><font color="f27c30">Data Sharing</font>, Download, Multi-Modal Linking, <font color="f27c30">Querying</font>, </span>
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<span class="fragment">Networking, System Administration, </span>
<span class="fragment">Partnerships, Funding, HR</span>
<span class="fragment"><font color="f27c30">...No big deal!</font></span>
</p>
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-->
<section>
<h2><font color="12a3d8">Data Flow</font></h2>
<img src="images/Data_flow.jpg">
</section>
<section>
<img src="images/LORIS_full_functionality.png">
</section>
<section>
<img src="images/cbrain_uniview.png">
</section>
</section>
<section data-transition="convex">
<section>
<img src="images/BrainCode.png">
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<img src="images/BrainCode_big_data.png">
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<img src="images/ONDRI.png">
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</section>
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<h2>BigBrain</h2>
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<img src="images/BigBrain.png">
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<td width="53%" style="vertical-align: middle">
<img src="images/BigBrain_paper.png">
</td></tr></table>
</section>
<section>
<img src="images/CCNA.png">
</section>
<section>
<img src="images/CCC.png">
</section>
<!-- QPN -->
<section data-transition="fade">
<h2>Quebec Parkinson Network</h2>
<img src="images/QPN.png" width="80%">
</section>
<!-- OMEGA - small pilot, interest has spiked -->
<section data-transition="convex">
<table class="reveal">
<h2><a href="https://omega.bic.mni.mcgill.ca">OMEGA</a></h2>
<tr>
<td width="65%" style="vertical-align: middle">
<img src="images/OMEGA.png">
</td>
<td width="35%" style="vertical-align: middle">
<p><small>
<ul>
<li>Open MEG Archive</li><br>
<li>First open MEG repository</li><br>
<li>180 user accounts created</li><br>
<li>Associated structural data</li><br>
<li>500+ reads on academia.edu</li><br>
</ul>
</small></p>
</td>
</tr></table>
</section>
<!-- NIHPD -->
<section data-transition="convex">
<img src="images/NIHPD_logo.jpg">
<table class="reveal">
<tr>
<td width="45%" style="vertical-align: middle">
<img src="images/NIHPD_paper.png">
</td>
<td width="30%" style="vertical-align: middle">
<img src="images/MRI_images_several.jpg">
</td>
<td width="30%" style="vertical-align: top">
<ul><small>
<li>Cited 295 times</li>
<li>Control data for NDAR</li>
<li>Longitudinal study (8 years)</li>
<li>532 subjects</li>
<li>8000 distinct variables</li>
<li>37000 individual assessments</li>
<li>T1, T2, PD, DTI, Spectroscopy</li>
<li>∼3TB of imaging data</li>
<li>2000 MRI acquisitions</li>
</small></ul>
</td>
</tr></table>
</section>
<!-- IBIS -->
<section data-transition="convex">
<img src="images/IBIS.png">
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<td width="30%" style="vertical-align: middle">
<img src="images/IBIS_image.png">
</td>
<td width="30%" style="vertical-align: top">
<p><small>
<ul>
<li>Autism infant brain development</li>
<li>3000+ scans</li>
<li>700+ subjects</li>
<li>7000 distinct variables</li>
<li>150,000+ individual assessments</li>
<li>T1, T2, DTI, BOLD</li>
<li>∼5 TBs imaging data</li>
<li>Genetic/biospecimen data</li>
</ul>
</small></p>
</td>
</tr></table>
</section>
</section>
<!-- Multi-modal techniques -->
<section data-transition="convex">
<section data-transition="fade">
<h2>What are we planning on doing?</h2>
</section>
<!-- Big Data -->
<section>
<img src="images/Big_data.png">
</section>
<section>
<img src="images/Whale.png">
</section>
<!-- Multi-resolution/trajectories -->
<section>
<img src="images/Neuroinformatics_scope.jpg">
</section>
<section>
<img src="images/Cross_modal.png">
</section>
<!-- AI -->
<section>
<img src="images/DELL_AI.png">
</section>
</section>
<!-- Data sharing -->
<section>
<section data-transition="convex" data-background="images/Data_sharing_cartoon.png">
</section>
<!-- Interoperability -->
<section data-background="images/api_background.jpg">
<h2 style="margin: 0px -200px 0px -200px;text-shadow:
-1px -1px 0 #000,
1px -1px 0 #000,
-1px 1px 0 #000,
1px 1px 0 #000;"><font color="yellow">Interoperability & API Building</font></h2>
</section>
<!-- LORIS API Example -->
<section>
<h2>LORIS API</h2>
<img width="80%" src="images/LORIS_api.png">
</section>
<!-- Git Annex/DataLad -->
<section data-transition="fade">
<img src="images/CONP_map.jpg">
</section>
<!-- Standarization frameworks-->
<section data-transition="fade">
<table class="reveal">
<tr>
<td width="25%" style="vertical-align: middle">
<img src="images/Nidm.png">
<img src="images/BIDS.png">
</td>
<td width="25%" style="vertical-align: middle">
<img src="images/Boutiques_paper.png">
<img src="images/Atlases.png">
</td>
</tr>
</table>
</section>
<!-- Ethics Framework -->
<section>
<h2>Ethics Framework</h2>
<img width="80%" src="images/Consent_codes.png">
</section>
<!-- Visualization -->
<section>
<table class = "reveal">
<tr>
<td width="50%">
<img src="images/BrainBrowser_VolumeViewer.png">
<img src="images/Pixpipe.png">
</td>
<td width="50%">
<img src="images/BrainBrowser_SurfaceViewer.png">
<img src="images/Braindr.png">
</td>
</tr></table>
</section>
<!-- Brainhack -->
<section data-transition="fade">
<table class="reveal">
<h2><a href="">Hackathons</a></h2>
<tr>
<td width="75%" style="vertical-align: middle">
<img src="images/C-BASE.png">
</td>
<td width="25%" style="vertical-align: middle">
<p> Important value of hackathons to data sharing initiatives</p>
<img src="images/Brainhack.png">
</td>
</tr></table>
</section>
</section>
<!-- Data Publishing -->
<section>
<section data-transition="fade" data-background="images/data_publishing.png">
<h1 style="text-shadow:-1px -1px 0 #000,1px -1px 0 #000,-1px 1px 0 #000,1px 1px 0 #000;"><font color="indigo">Data Publishing<br>
- Not Data Sharing -</font></h1>
</section>
<!-- EU going Open Access -->
<section data-transition="fade">
<img src="images/Open_access.png">
</section>
<!-- Faculty 1000 -->
<section data-transition="fade">
<img src="images/F1000.png">
</section>
<!-- FAIR -->
<section data-transition="fade">
<img src="images/FAIR.png">
</section>
<!-- COBIDAS -->
<section data-transition="fade">
<img src="images/COBIDAS_Nature_new.png">
</section>
</section>
<!-- Acknowledgemnts-->
<section data-transition="slide" data-background="#87CEEB" data-background-transition="zoom">
<table class="reveal">
<tr>
<td width="60%" style="vertical-align: top">
<img src="images/loris_team_2017.jpg">
</td>
<td width="40%" style="vertical-align: middle">
<p>Thank you!<small><font color="blue" size="4">Acknowledgements:</font><font color="black" size="2"> Alan Evans, Alex Zijdenbos, Dario Vins, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastian Muehlboeck, Reza Adalat, Louis Collins, Vladimir Fonov, Marc Rousseau, Mia Petkova, Rathi Gnanasekaran, David Brownlee, Tarek Sherif, Pierre Rioux, Nic Kassis, Leigh MacIntyre, Claude Lepage, Ilana Leppert, Natasha Beck, Tristan Glatard, Bert Vincent, Lindsay Lewis, Najma Mahani, Elodie Portales-Casamar, Alden Woodward, Sylvain Milot, Jean Francois Malouin, Sylvain Baillet, Daniel Kroetz, Martin Weiss, Mathieu Desrosier, Jason Karamchandani, Amit Bar-Or, Ted Fon, John Brietner, Derek Lo, Patrick Bermudez, Chris Steele, Pamela Patterson and one of my favourites: Pierre Bellec!</font></small></p>
<p><font color="blue" size="3">Special thanks to INCF...</font></p>
<p><font color="blue" size="3"> and especially Mathew Abrams!</font></p>
</td>
</tr></table>
</section>
</div>
</div>
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