From a66f041ac15372a009a65f310f6c65de37fa0ccf Mon Sep 17 00:00:00 2001
From: Vedran Kasalica <v.kasalica@esciencecenter.nl>
Date: Tue, 30 Jul 2024 12:01:51 +0200
Subject: [PATCH] Fix the javadocs and imports

---
 .../externalAPIs/BioToolsRestClient.java      | 40 ++++++++++---------
 .../benchmarks/WorkflowStepBenchmark.java     |  5 ---
 2 files changed, 21 insertions(+), 24 deletions(-)

diff --git a/src/main/java/nl/esciencecenter/externalAPIs/BioToolsRestClient.java b/src/main/java/nl/esciencecenter/externalAPIs/BioToolsRestClient.java
index 553346a..45751fa 100644
--- a/src/main/java/nl/esciencecenter/externalAPIs/BioToolsRestClient.java
+++ b/src/main/java/nl/esciencecenter/externalAPIs/BioToolsRestClient.java
@@ -12,7 +12,7 @@
 import okhttp3.Response;
 
 /**
- * The {@code BiotoolsAPI} class provides methods to retrieve and process tool metrics
+ * The {@code BioToolsRestClient} class provides methods to retrieve and process tool metrics
  * provided by bio.tools API.
  */
 @Slf4j
@@ -34,22 +34,24 @@ public class BioToolsRestClient {
     * @throws JSONException In case the JSON object returned by bio.tools cannot be
     *                       parsed.
     */
-   public static JSONObject fetchToolFromBioTools(String toolID) throws JSONException, IOException {
-      JSONObject bioToolAnnotation;
-      toolID = toolID.toLowerCase();
-      String urlToBioTools = "https://bio.tools/api/" + toolID +
-            "?format=json";
-      Request request = new Request.Builder().url(urlToBioTools).build();
-      Response response = client.newCall(request).execute();
-
-      if (!response.isSuccessful()) {
-         throw new IOException("Tool " + toolID + " not found in bio.tools.");
-      }
-
-      bioToolAnnotation = new JSONObject(response.body().string());
-      response.close();
-
-      log.debug("The list of tools successfully fetched from bio.tools.");
-      return bioToolAnnotation;
-   }
+    public static JSONObject fetchToolFromBioTools(String toolID) throws JSONException, IOException {
+       JSONObject bioToolAnnotation;
+       toolID = toolID.toLowerCase();
+       String urlToBioTools = "https://bio.tools/api/" + toolID +
+             "?format=json";
+       Request request = new Request.Builder().url(urlToBioTools).build();
+       Response response = client.newCall(request).execute();
+
+       if (!response.isSuccessful()) {
+          throw new IOException("Tool " + toolID + " not found in bio.tools.");
+       }
+
+       bioToolAnnotation = new JSONObject(response.body().string());
+       response.close();
+
+       log.debug("The list of tools successfully fetched from bio.tools.");
+       return bioToolAnnotation;
+    }
+   
+
 }
diff --git a/src/main/java/nl/esciencecenter/models/benchmarks/WorkflowStepBenchmark.java b/src/main/java/nl/esciencecenter/models/benchmarks/WorkflowStepBenchmark.java
index 6375188..ae432da 100644
--- a/src/main/java/nl/esciencecenter/models/benchmarks/WorkflowStepBenchmark.java
+++ b/src/main/java/nl/esciencecenter/models/benchmarks/WorkflowStepBenchmark.java
@@ -1,17 +1,12 @@
 package nl.esciencecenter.models.benchmarks;
 
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.List;
 
 import org.json.JSONObject;
 
-import com.oracle.truffle.regex.tregex.util.json.JsonObject;
 
 import lombok.Data;
 import lombok.NoArgsConstructor;
 import lombok.NonNull;
-import nl.esciencecenter.restape.ToolBenchmarkingAPIs;
 
 @Data
 @NoArgsConstructor