…nt org

* wip: Add bug two

* refact: Try defaulting to a dict

* fix: Dont allow remote to be unbound

* refact: Check if not equal to component type

* refact: Re-add isinstance dict

* fix: Remove mention of component_name

* refact: Add special case for strings following dicts

* test: Try removing branch from test case

* refact: Remove isinstance for str

* refact: Use dict only with get_comps out

* Revert "refact: Use dict only with get_comps out"

This reverts commit 7ebc6dc.

* refact: Check if content has subwfs

* refact: Always set current remote

* refact: Check sha before resetting current_repo

* refact: Do the negative test

* refact: Use another variable for remote

* refact: Simplify check

* refact: Expand check once again

* refact: Roll back to previous check

* fix: self.sha must not be none to reset to none

* Revert "fix: self.sha must not be none to reset to none"

This reverts commit 65aa1c4.

* Try removing the section entirely

* refact: Try moving check to reset

* refact: Remove unnecessary current_sha

* refact: Change check in get_comps

* refact: Set git remote beforehand

* refact: Change indent so previous check is the same

* refact: Remove current repo check

* Revert "refact: Remove current repo check"

This reverts commit a956e04.

* refact: Try using name list

* fix: Remove break in loop

* refactor: Always set current_repo

* fix: Check if name is in updated

* refactor: Remove unused sections and logs

get_genome_annotation is not necessary, given we're using another
subworkflow for the other tests

Co-authored-by: Matthieu Muffato <[email protected]>