From 78d70fa6d2f471ee309f62354ee483f7d40a4b53 Mon Sep 17 00:00:00 2001 From: Matthieu Muffato Date: Wed, 29 Nov 2023 02:12:43 +0000 Subject: [PATCH] fixup! Like in the genome note pipeline, use the work directory instead of /tmp --- modules/nf-core/samtools/collate/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/nf-core/samtools/collate/main.nf b/modules/nf-core/samtools/collate/main.nf index 0e4ba5d..9530b28 100644 --- a/modules/nf-core/samtools/collate/main.nf +++ b/modules/nf-core/samtools/collate/main.nf @@ -2,10 +2,10 @@ process SAMTOOLS_COLLATE { tag "$meta.id" label 'process_medium' - conda "bioconda::samtools=1.16.1" + conda "bioconda::samtools=1.17" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/samtools:1.16.1--h6899075_1': - 'quay.io/biocontainers/samtools:1.16.1--h6899075_1' }" + 'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0': + 'quay.io/biocontainers/samtools:1.17--h00cdaf9_0' }" input: tuple val(meta), path(input)