From d8b32e97aaa948e4b5f6f72b02e221505ef5937f Mon Sep 17 00:00:00 2001
From: Tyler Chafin <tc25@sanger.ac.uk>
Date: Tue, 24 Sep 2024 13:22:35 +0100
Subject: [PATCH] Delete .github/workflows/download_pipeline.yml

---
 .github/workflows/download_pipeline.yml | 88 -------------------------
 1 file changed, 88 deletions(-)
 delete mode 100644 .github/workflows/download_pipeline.yml

diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
deleted file mode 100644
index 9ea6412..0000000
--- a/.github/workflows/download_pipeline.yml
+++ /dev/null
@@ -1,88 +0,0 @@
-name: Test successful pipeline download with 'nf-core download'
-
-# Run the workflow when:
-#  - dispatched manually
-#  - when a PR is opened or reopened to master branch
-#  - the head branch of the pull request is updated, i.e. if fixes for a release are pushed last minute to dev.
-on:
-  workflow_dispatch:
-    inputs:
-      testbranch:
-        description: "The specific branch you wish to utilize for the test execution of nf-core download."
-        required: true
-        default: "main"
-  pull_request:
-    types:
-      - opened
-      - edited
-      - synchronize
-    branches:
-      - main
-      - dev
-  pull_request_target:
-    branches:
-      - main
-      - dev
-
-env:
-  NXF_ANSI_LOG: false
-
-jobs:
-  download:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v2
-
-      - name: Disk space cleanup
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5
-        with:
-          python-version: "3.12"
-          architecture: "x64"
-      - uses: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537 # v7
-        with:
-          singularity-version: 3.8.7
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install git+https://github.com/nf-core/tools.git@dev
-
-      - name: Get the repository name and current branch set as environment variable
-        run: |
-          echo "REPO_LOWERCASE=${GITHUB_REPOSITORY,,}" >> ${GITHUB_ENV}
-          echo "REPOTITLE_LOWERCASE=$(basename ${GITHUB_REPOSITORY,,})" >> ${GITHUB_ENV}
-          echo "REPO_BRANCH=${{ github.event.inputs.testbranch || 'dev' }}" >> ${GITHUB_ENV}
-
-      - name: Download the pipeline
-        env:
-          NXF_SINGULARITY_CACHEDIR: ./
-        run: |
-          nf-core download ${{ env.REPO_LOWERCASE }} \
-          --revision ${{ env.REPO_BRANCH }} \
-          --outdir ./${{ env.REPOTITLE_LOWERCASE }} \
-          --compress "none" \
-          --container-system 'singularity' \
-          --container-library "quay.io" -l "docker.io" -l "ghcr.io" \
-          --container-cache-utilisation 'amend' \
-          --download-configuration
-
-      - name: Inspect download
-        run: tree ./${{ env.REPOTITLE_LOWERCASE }}
-
-      - name: Run the downloaded pipeline (stub)
-        id: stub_run_pipeline
-        continue-on-error: true
-        env:
-          NXF_SINGULARITY_CACHEDIR: ./
-          NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
-      - name: Run the downloaded pipeline (stub run not supported)
-        id: run_pipeline
-        if: ${{ job.steps.stub_run_pipeline.status == failure() }}
-        env:
-          NXF_SINGULARITY_CACHEDIR: ./
-          NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results