DESCRIPTION

Package: SCENT
Type: Package
Title: Single-Cell ENhancer Target (SCENT) gene mapping for single cell multimodal data 
Version: 1.0.0
Author: Saori Sakaue and Shakson Isaac
Maintainer: Shakson Isaac <shakson_isaac@g.harvard.edu>
Description: R package that contains functions for the SCENT algorithm. SCENT uses 
    single-cell multimodal data (e.g., 10X Multiome RNA/ATAC) and links 
    ATAC-seq peaks (putative enhancers) to their target genes by modeling association
    between chromatin accessibility and gene expression across individual single cells.
Depends: R (>= 3.5.0)
Imports:
    methods, 
    Hmisc, 
    R.utils, 
    data.table, 
    lme4, 
    stringr,
    boot, 
    MASS, 
    Matrix, 
    parallel
Suggests:
    knitr, 
    rmarkdown
SystemRequirements:
    bedtools (https://github.com/arq5x/bedtools2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
VignetteBuilder: knitr