deploy: 9c3bbf4

_s_b_m_l_reader_8h.html

@@ -172,8 +172,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a638d6486ad221b01e62d2d15
 <div class="ttc" id="a_x_m_l_error_8h_html_a5ff7604587bd93fb60cdecb72acd160ca3f2534fabf1d790d89fcc7ce11a19e78"><div class="ttname"><a href="_x_m_l_error_8h.html#a5ff7604587bd93fb60cdecb72acd160ca3f2534fabf1d790d89fcc7ce11a19e78">XMLFileOperationError</a></div><div class="ttdeci">@ XMLFileOperationError</div><div class="ttdef"><b>Definition:</b> XMLError.h:379</div></div>
 <div class="ttc" id="a_x_m_l_error_8h_html_a5ff7604587bd93fb60cdecb72acd160caf2d9d9971e9f4971caf9e213fb7d8b2e"><div class="ttname"><a href="_x_m_l_error_8h.html#a5ff7604587bd93fb60cdecb72acd160caf2d9d9971e9f4971caf9e213fb7d8b2e">XMLFileUnreadable</a></div><div class="ttdeci">@ XMLFileUnreadable</div><div class="ttdef"><b>Definition:</b> XMLError.h:375</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html"><div class="ttname"><a href="class_s_b_m_l_document.html">SBMLDocument</a></div><div class="ttdef"><b>Definition:</b> SBMLDocument.h:351</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1163</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a412aa5420aa21531826c16d270a5f5e0"><div class="ttname"><a href="class_s_b_m_l_document.html#a412aa5420aa21531826c16d270a5f5e0">SBMLDocument::getError</a></div><div class="ttdeci">const SBMLError * getError(unsigned int n) const</div><div class="ttdoc">Returns the nth error or warning encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1146</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1169</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a412aa5420aa21531826c16d270a5f5e0"><div class="ttname"><a href="class_s_b_m_l_document.html#a412aa5420aa21531826c16d270a5f5e0">SBMLDocument::getError</a></div><div class="ttdeci">const SBMLError * getError(unsigned int n) const</div><div class="ttdoc">Returns the nth error or warning encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1152</div></div>
 <div class="ttc" id="aclass_s_b_m_l_reader_html"><div class="ttname"><a href="class_s_b_m_l_reader.html">SBMLReader</a></div><div class="ttdef"><b>Definition:</b> SBMLReader.h:343</div></div>
 <div class="ttc" id="aclass_s_b_m_l_reader_html_a1a6a86ebaf0a83de711ee401bd1c44f1"><div class="ttname"><a href="class_s_b_m_l_reader.html#a1a6a86ebaf0a83de711ee401bd1c44f1">SBMLReader::readSBMLFromFile</a></div><div class="ttdeci">SBMLDocument * readSBMLFromFile(const std::string &amp;filename)</div><div class="ttdoc">Reads an SBML document from the given file.</div><div class="ttdef"><b>Definition:</b> SBMLReader.cpp:122</div></div>
 <div class="ttc" id="aclass_x_m_l_error_html_a5c954a2e0f1f2a3a4c098ab41c4cb570"><div class="ttname"><a href="class_x_m_l_error.html#a5c954a2e0f1f2a3a4c098ab41c4cb570">XMLError::getErrorId</a></div><div class="ttdeci">unsigned int getErrorId() const</div><div class="ttdoc">Returns the identifier of this error.</div><div class="ttdef"><b>Definition:</b> XMLError.cpp:504</div></div>

add_c_v_terms_8cpp-example.html

@@ -230,8 +230,8 @@
 <div class="ttc" id="aclass_model_html_a035d37d5a6cd0616666919d5222fdf37"><div class="ttname"><a href="class_model.html#a035d37d5a6cd0616666919d5222fdf37">Model::getNumSpecies</a></div><div class="ttdeci">unsigned int getNumSpecies() const</div><div class="ttdoc">Get the number of Species objects in this Model.</div><div class="ttdef"><b>Definition:</b> Model.cpp:3123</div></div>
 <div class="ttc" id="aclass_model_html_a19f5a10054812b4c7eab4ff9266d4c2d"><div class="ttname"><a href="class_model.html#a19f5a10054812b4c7eab4ff9266d4c2d">Model::getSpecies</a></div><div class="ttdeci">const Species * getSpecies(unsigned int n) const</div><div class="ttdoc">Get the nth Species object in this Model.</div><div class="ttdef"><b>Definition:</b> Model.cpp:2564</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html"><div class="ttname"><a href="class_s_b_m_l_document.html">SBMLDocument</a></div><div class="ttdef"><b>Definition:</b> SBMLDocument.h:351</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1163</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1186</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1169</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1192</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html_aace4f4d2a3deb1b45885abbb4301a2e6"><div class="ttname"><a href="class_s_b_m_l_document.html#aace4f4d2a3deb1b45885abbb4301a2e6">SBMLDocument::getModel</a></div><div class="ttdeci">const Model * getModel() const</div><div class="ttdoc">Returns the Model object stored in this SBMLDocument.</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:350</div></div>
 <div class="ttc" id="aclass_s_base_html_a852e0bd8bfc64342750faf5cbccec65e"><div class="ttname"><a href="class_s_base.html#a852e0bd8bfc64342750faf5cbccec65e">SBase::addCVTerm</a></div><div class="ttdeci">int addCVTerm(CVTerm *term, bool newBag=false)</div><div class="ttdoc">Adds a copy of the given CVTerm object to this SBML object.</div><div class="ttdef"><b>Definition:</b> SBase.cpp:2805</div></div>
 <div class="ttc" id="aclass_species_html"><div class="ttname"><a href="class_species.html">Species</a></div><div class="ttdef"><b>Definition:</b> Species.h:429</div></div>

add_custom_validator_8cpp-example.html

@@ -250,7 +250,7 @@
 <div class="ttc" id="a_x_m_l_error_8h_html_a54cf85ac4f9cf6e597bc2cfcb5a6d0f3a1cbd6a4754d28a0686ddc908ebb25279"><div class="ttname"><a href="_x_m_l_error_8h.html#a54cf85ac4f9cf6e597bc2cfcb5a6d0f3a1cbd6a4754d28a0686ddc908ebb25279">LIBSBML_SEV_WARNING</a></div><div class="ttdeci">@ LIBSBML_SEV_WARNING</div><div class="ttdef"><b>Definition:</b> XMLError.h:529</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html"><div class="ttname"><a href="class_s_b_m_l_document.html">SBMLDocument</a></div><div class="ttdef"><b>Definition:</b> SBMLDocument.h:351</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html_a25684f139b8f5e44ec2089eba3fdfda0"><div class="ttname"><a href="class_s_b_m_l_document.html#a25684f139b8f5e44ec2089eba3fdfda0">SBMLDocument::checkConsistency</a></div><div class="ttdeci">unsigned int checkConsistency()</div><div class="ttdoc">Performs consistency checking and validation on this SBML document.</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:699</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1186</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1192</div></div>
 <div class="ttc" id="aclass_s_b_m_l_error_html"><div class="ttname"><a href="class_s_b_m_l_error.html">SBMLError</a></div><div class="ttdef"><b>Definition:</b> SBMLError.h:1100</div></div>
 <div class="ttc" id="aclass_s_b_m_l_validator_html"><div class="ttname"><a href="class_s_b_m_l_validator.html">SBMLValidator</a></div><div class="ttdef"><b>Definition:</b> SBMLValidator.h:96</div></div>
 </div><!-- fragment --> </div><!-- contents -->

add_layout_8cpp-example.html

@@ -210,8 +210,8 @@
 <div class="ttc" id="aclass_layout_pkg_namespaces_html"><div class="ttname"><a href="class_layout_pkg_namespaces.html">LayoutPkgNamespaces</a></div></div>
 <div class="ttc" id="aclass_model_html"><div class="ttname"><a href="class_model.html">Model</a></div><div class="ttdef"><b>Definition:</b> Model.h:485</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html"><div class="ttname"><a href="class_s_b_m_l_document.html">SBMLDocument</a></div><div class="ttdef"><b>Definition:</b> SBMLDocument.h:351</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1163</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1186</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1169</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1192</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html_aace4f4d2a3deb1b45885abbb4301a2e6"><div class="ttname"><a href="class_s_b_m_l_document.html#aace4f4d2a3deb1b45885abbb4301a2e6">SBMLDocument::getModel</a></div><div class="ttdeci">const Model * getModel() const</div><div class="ttdoc">Returns the Model object stored in this SBMLDocument.</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:350</div></div>
 <div class="ttc" id="aclass_s_base_html_ae89a4757c093b8f9c491338bcb278921"><div class="ttname"><a href="class_s_base.html#ae89a4757c093b8f9c491338bcb278921">SBase::enablePackage</a></div><div class="ttdeci">int enablePackage(const std::string &amp;pkgURI, const std::string &amp;pkgPrefix, bool flag)</div><div class="ttdoc">Enables or disables the given SBML Level&amp;#160;3 package on this object.</div><div class="ttdef"><b>Definition:</b> SBase.cpp:3651</div></div>
 <div class="ttc" id="aclass_s_base_html_aed8f42e0f220bd85af8d01b51d87aeff"><div class="ttname"><a href="class_s_base.html#aed8f42e0f220bd85af8d01b51d87aeff">SBase::getVersion</a></div><div class="ttdeci">unsigned int getVersion() const</div><div class="ttdoc">Returns the Version within the SBML Level of the SBMLDocument object containing this object.</div><div class="ttdef"><b>Definition:</b> SBase.cpp:3142</div></div>

add_model_history_8cpp-example.html

@@ -246,8 +246,8 @@
 <div class="ttc" id="aclass_model_history_html_ad62ebc95e0deb70a991a74cee6b7be88"><div class="ttname"><a href="class_model_history.html#ad62ebc95e0deb70a991a74cee6b7be88">ModelHistory::addCreator</a></div><div class="ttdeci">int addCreator(ModelCreator *mc)</div><div class="ttdoc">Adds a copy of a ModelCreator object to the list of &quot;model creator&quot; values stored in this ModelHistor...</div><div class="ttdef"><b>Definition:</b> ModelHistory.cpp:190</div></div>
 <div class="ttc" id="aclass_model_history_html_adb0ad57f90f2150d0d8cd26481df9688"><div class="ttname"><a href="class_model_history.html#adb0ad57f90f2150d0d8cd26481df9688">ModelHistory::setCreatedDate</a></div><div class="ttdeci">int setCreatedDate(Date *date)</div><div class="ttdoc">Sets the creation date of this ModelHistory object.</div><div class="ttdef"><b>Definition:</b> ModelHistory.cpp:213</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html"><div class="ttname"><a href="class_s_b_m_l_document.html">SBMLDocument</a></div><div class="ttdef"><b>Definition:</b> SBMLDocument.h:351</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1163</div></div>
-<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1186</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a0e23df07740aba0d0aa44a88f8a8f5b1"><div class="ttname"><a href="class_s_b_m_l_document.html#a0e23df07740aba0d0aa44a88f8a8f5b1">SBMLDocument::getNumErrors</a></div><div class="ttdeci">unsigned int getNumErrors() const</div><div class="ttdoc">Returns the number of errors or warnings encountered during parsing, consistency checking,...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1169</div></div>
+<div class="ttc" id="aclass_s_b_m_l_document_html_a4ba64417bb8900acc865a4bb3319a4d2"><div class="ttname"><a href="class_s_b_m_l_document.html#a4ba64417bb8900acc865a4bb3319a4d2">SBMLDocument::printErrors</a></div><div class="ttdeci">void printErrors(std::ostream &amp;stream=std::cerr) const</div><div class="ttdoc">Prints all the errors or warnings encountered trying to parse, check, or translate this SBML document...</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:1192</div></div>
 <div class="ttc" id="aclass_s_b_m_l_document_html_aace4f4d2a3deb1b45885abbb4301a2e6"><div class="ttname"><a href="class_s_b_m_l_document.html#aace4f4d2a3deb1b45885abbb4301a2e6">SBMLDocument::getModel</a></div><div class="ttdeci">const Model * getModel() const</div><div class="ttdoc">Returns the Model object stored in this SBMLDocument.</div><div class="ttdef"><b>Definition:</b> SBMLDocument.cpp:350</div></div>
 <div class="ttc" id="aclass_s_base_html_aef0ea49f9a3ad67d72edb2c1cf92ad82"><div class="ttname"><a href="class_s_base.html#aef0ea49f9a3ad67d72edb2c1cf92ad82">SBase::setModelHistory</a></div><div class="ttdeci">int setModelHistory(ModelHistory *history)</div><div class="ttdoc">Sets the ModelHistory of this object.</div><div class="ttdef"><b>Definition:</b> SBase.cpp:2295</div></div>
 <div class="ttc" id="aoperation_return_values_8h_html_a87d90022619ee855654b2b8f4997886da9fb84324c51e63460901490374a4ea82"><div class="ttname"><a href="operation_return_values_8h.html#a87d90022619ee855654b2b8f4997886da9fb84324c51e63460901490374a4ea82">LIBSBML_INVALID_OBJECT</a></div><div class="ttdeci">@ LIBSBML_INVALID_OBJECT</div><div class="ttdef"><b>Definition:</b> operationReturnValues.h:96</div></div>