c.bib

@ARTICLE{casanova:1997,
       AUTHOR = {Henri Casanova and Jack Dongarra},
        TITLE = {{NetSolve}: {A} Network-Enabled
                 Server for Solving Computational Science Problems},
      JOURNAL = {The International Journal of Supercomputer Applications and High Performance Computing},
         YEAR = 1997,
       VOLUME = 11,
       NUMBER = 3,
        PAGES = {212--223}
}

@ARTICLE{castellanos:2004,
    AUTHOR = { Castellanos, M. and Wilson, D. B. and Shuler, M. L. },
    TITLE = { A modular minimal cell model: Purine and pyrimidine transport and metabolism},
    JOURNAL = { PNAS },
    YEAR = 2004,
    VOLUME = 101,
    PAGES = { 6681--6686}
}

@MISC{chebi:2004,
       AUTHOR = {ChEBI},
        TITLE = {{ChEBI}},
 HOWPUBLISHED = {Available via the World Wide Web at
                 http://www.ebi.ac.uk/chebi/},
         YEAR = 2004
}


@ARTICLE{cheyer:2001,
       AUTHOR = {Adam Cheyer and David Martin},
        TITLE = {The Open Agent Architecture},
      JOURNAL = {Journal of Autonomous Agents and Multi-Agent Systems},
         YEAR = 2001,
       VOLUME = 4,
       NUMBER = 1,
        PAGES = {143--148},
        MONTH = mar
}

@ARTICLE{chong:2002,
       AUTHOR = {Lisa Chong and L.~Bryan Ray},
        TITLE = {Whole-istic Biology},
      JOURNAL = SCI,
         YEAR = 2002,
       VOLUME = 295,
       NUMBER = 5560,
        PAGES = {1661},
        MONTH = mar
}

@MISC{clark:1998,
       AUTHOR = {James Clark},
        TITLE = {{XP} Version 0.5},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{ftp://ftp.jclark.com/pub/xml/}},
         YEAR = 1998
}

@MISC{clark:1999,
       AUTHOR = {James Clark},
        TITLE = {{XSL} {T}ransformations ({XSLT}) {V}ersion 1.0, {W3C} {R}ecommendation, 16-{N}ovember-1999},
 HOWPUBLISHED = {Available via the World Wide Web at \url{http://www.w3.org/TR/1999/REC-xslt-19991116}},
         YEAR = 1999
}

@MISC{colan:1999,
       AUTHOR = {Mark Colan},
        TITLE = {{InfoBus} 1.2 Specification},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{http://java.sun.com/products/javabeans/infobus/}},
         YEAR = 1999
}

@ARTICLE {courtot:2011,
        TITLE = {Controlled vocabularies and semantics in Systems Biology.},
        JOURNAL = {Mol Syst Biol},
        VOLUME = {7},
        YEAR = {2011},
        PAGES = {543},
        AUTHOR = {Courtot, M. and Juty, N. and Knüpfer, C. and Waltemath, D. and Zhukova, A. and Dräger, A. and Dumontier, M. and Finney, A. and Golebiewski, M. and Hastings, J. and Hoops, S. and Keating, S. and Kell, D. B. and Kerrien, S. and Lawson, J. and Lister, A. and Lu, J. and Machne, R. and Mendes, P. and Pocock, M. and Rodriguez, N. and Villeger, A. and Wilkinson, D. J. and Wimalaratne, S. and Laibe, C. and Hucka, M. and Le Novère, N.}
}

@MISC{cuellar:2002,
       AUTHOR = {Autumn~A. Cuellar and Melanie Nelson and Warren Hedley},
        TITLE = {The {CellML} Metadata 1.0 Specification Working Draft---16 {January} 2002},
 HOWPUBLISHED = {Available via the World Wide Web at
                 \url{https://cellml.org/public/metadata/cellml_metadata_specification.html}},
         YEAR = 2002
}

@article{cuellar_2003,
   Author = {Cuellar, Autumn A. and Lloyd, Catherine M. and Nielsen, Poul F. and Bullivant, David P. and Nickerson, David P. and Hunter, Peter J.},
   Title = {An Overview of CellML 1.1, a Biological Model Description Language},
   Journal = {Simulation},
   Volume = {79},
   Number = {12},
   Pages = {740-747},
   Date = {December},
   Year = {2003}
}

@book{chartrand_1977,
AUTHOR = {Gary Chartrand},
TITLE = {Introductory Graph Theory},
PUBLISHER = {Dover Publishing, Inc.},
ADDRESS = {New York},
YEAR = {1977}
}

@article{codata_2008,
       AUTHOR = {Peter J. Mohr and Barry N. Taylor and David B. Newell},
        TITLE = {{CODATA Recommended Values of the Fundamental Physical Constants: 2006}},
      JOURNAL = {Reviews of Modern Physics},
       VOLUME = {80},
        MONTH = {April-June},
        PAGES = {633--731},
         YEAR = 2008,
}