Dockerfile

# Create Docker container that can run dtiError analysis.

# Start with the Matlab r2015b runtime container
FROM vistalab/mcr-v90

MAINTAINER Michael Perry <lmperry@stanford.edu>

# Install XVFB and other dependencies
RUN apt-get update && apt-get install -y xvfb \
    xfonts-100dpi \
    xfonts-75dpi \
    xfonts-cyrillic \
    unzip \
    wget

# Install jq to parse the JSON config file
RUN wget -N -qO- -O /usr/bin/jq http://stedolan.github.io/jq/download/linux64/jq
RUN chmod +x /usr/bin/jq

# Set the diplay env variable for xvfb
ENV DISPLAY :1.0

# ADD the Matlab Stand-Alone (MSA) into the container.
COPY src/bin/gear_dtiError /usr/local/bin/dtiError

# Ensure that the executable files are executable
RUN chmod +x /usr/local/bin/dtiError

# Make directory for flywheel spec (v0)
ENV FLYWHEEL /flywheel/v0
RUN mkdir -p ${FLYWHEEL}

# Copy and configure run script and metadata code
COPY run ${FLYWHEEL}/run
RUN chmod +x ${FLYWHEEL}/run
COPY manifest.json ${FLYWHEEL}/manifest.json

# Configure entrypoint
ENTRYPOINT ["/flywheel/v0/run"]