This repository has been archived by the owner on Jul 12, 2024. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 0
/
iTOL_template_labels.txt
152 lines (144 loc) · 5.35 KB
/
iTOL_template_labels.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
TREE_COLORS
#use this template to define branch colors and styles, colored ranges and label colors/font styles/backgrounds
#lines starting with a hash are comments and ignored during parsing
#=================================================================#
# MANDATORY SETTINGS #
#=================================================================#
#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file (except in the SEPARATOR line, which uses space).
SEPARATOR TAB
#SEPARATOR SPACE
#SEPARATOR COMMA
#First 3 fields define the node, type and color
#Possible types are:
#'range': defines a colored range (colored background for labels/clade)
#'clade': defines color/style for all branches in a clade
#'branch': defines color/style for a single branch
#'label': defines font color/style for the leaf label
#'label_background': defines the leaf label background color
#The following additional fields are required:
#for 'range', field 4 defines the colored range label (used in the legend)
#The following additional fields are optional:
#for 'label', field 4 defines the font style ('normal',''bold', 'italic' or 'bold-italic') and field 5 defines the numeric scale factor for the font size (eg. with value 2, font size for that label will be 2x the standard size)
#for 'clade' and 'branch', field 4 defines the branch style ('normal' or 'dashed') and field 5 defines the branch width scale factor (eg. with value 0.5, branch width for that clade will be 0.5 the standard width)
#Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages
#=================================================================#
# Actual data follows after the "DATA" keyword #
#=================================================================#
DATA
al_16036121 label #2CA02C
al_16049055 label #2CA02C
al_16039165 label #2CA02C
al_16054918 label #2CA02C
al_16047927 label #2CA02C
al_16045305 label #2CA02C
al_16054537 label #2CA02C
al_16043284 label #2CA02C
at_AT3G63310 label #0066FF
at_AT5G47120 label #0066FF
at_AT4G14730 label #0066FF
at_AT4G02690 label #0066FF
at_AT4G15470 label #0066FF
at_AT4G17580 label #0066FF
at_AT1G03070 label #0066FF
bd_Bradi1g55650 label #D4AA00
bd_Bradi1g55660 label #D4AA00
bd_Bradi1g08870 label #D4AA00
bd_Bradi1g05560 label #D4AA00
bd_Bradi1g05570 label #D4AA00
bd_Bradi3g02520 label #D4AA00
bd_Bradi2g25870 label #D4AA00
bd_Bradi4g15160 label #D4AA00
bo_Bo2g132200 label #2CA02C
bo_Bo1g057620 label #2CA02C
bo_Bo7g103760 label #2CA02C
bo_Bo8g040670 label #2CA02C
bo_Bo4g097050 label #2CA02C
bo_Bo9g069310 label #2CA02C
bo_Bo2g100640 label #2CA02C
br_Brara.B02945 label #2CA02C
br_Brara.D00010 label #2CA02C
br_Brara.I01977 label #2CA02C
br_Brara.H00806 label #2CA02C
br_Brara.B02623 label #2CA02C
br_Brara.C04437 label #2CA02C
br_Brara.A02046 label #2CA02C
br_Brara.J00158 label #2CA02C
ca_106480 label #C83737
ca_75062 label #C83737
ca_130549 label #C83737
ca_84247 label #C83737
ca_2278 label #C83737
cb_Carubv10001524m label #2CA02C
cb_Carubv10018936m label #2CA02C
cb_Carubv10005406m label #2CA02C
cb_Carubv10011301m label #2CA02C
cb_Carubv10007653m label #2CA02C
cb_Carubv10028224m label #2CA02C
cb_Carubv10007660m label #2CA02C
cc_C.cajan_07647 label #C83737
cc_C.cajan_13050 label #C83737
cc_C.cajan_30364 label #C83737
cc_C.cajan_13043 label #C83737
cc_C.cajan_05266 label #C83737
cc_C.cajan_27233 label #C83737
cc_C.cajan_30806 label #C83737
gm_Glyma.15G101400 label #C83737
gm_Glyma.05G064700 label #C83737
gm_Glyma.10G272600 label #C83737
gm_Glyma.13G211300 label #C83737
gm_Glyma.17G146500 label #C83737
gm_Glyma.01G205200 label #C83737
gm_Glyma.19G159300 label #C83737
gm_Glyma.02G144700 label #C83737
gm_Glyma.11G037700 label #C83737
gm_Glyma.10G029400 label #C83737
gm_Glyma.20G117300 label #C83737
mt_Medtr5g013340 label #C83737
mt_Medtr1g110390 label #C83737
mt_Medtr7g095510 label #C83737
mt_Medtr7g095530 label #C83737
mt_Medtr7g095600 label #C83737
mt_Medtr2g021130 label #C83737
mt_Medtr1g071430 label #C83737
mt_Medtr7g095640 label #C83737
os_LOC_Os11g37200 label #D4AA00
os_LOC_Os07g08060 label #D4AA00
os_LOC_Os07g08070 label #D4AA00
os_LOC_Os03g53400 label #D4AA00
os_LOC_Os02g03280 label #D4AA00
os_LOC_Os05g33360 label #D4AA00
os_LOC_Os03g58140 label #D4AA00
os_LOC_Os03g58150 label #D4AA00
pv_Phvul.001G154500 label #C83737
pv_Phvul.002G001400 label #C83737
pv_Phvul.007G174500 label #C83737
pv_Phvul.007G029100 label #C83737
pv_Phvul.003G224400 label #C83737
pv_Phvul.006G157400 label #C83737
sb_Sobic.010G000300 label #D4AA00
sb_Sobic.001G057800 label #D4AA00
sb_Sobic.009G131100 label #D4AA00
sb_Sobic.005G166100 label #D4AA00
sb_Sobic.004G024200 label #D4AA00
sb_Sobic.001G092600 label #D4AA00
sb_Sobic.001G057900 label #D4AA00
sb_Sobic.002G051700 label #D4AA00
si_Si007155 label #D4AA00
si_Si030923 label #D4AA00
si_Si022983 label #D4AA00
si_Si026757 label #D4AA00
si_Si038585 label #D4AA00
si_Si018163 label #D4AA00
si_Si037166 label #D4AA00
si_Si037225 label #D4AA00
zm_GRMZM2G027726 label #D4AA00
zm_GRMZM2G163877 label #D4AA00
zm_GRMZM2G132568 label #D4AA00
zm_GRMZM2G479608 label #D4AA00
zm_GRMZM2G099449 label #D4AA00
zm_GRMZM2G029087 label #D4AA00
zm_GRMZM2G014672 label #D4AA00
zm_GRMZM2G095898 label #D4AA00
zm_GRMZM2G074404 label #D4AA00
zm_GRMZM2G074356 label #D4AA00
zm_GRMZM2G128617 label #D4AA00