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iTOL_template_strips.txt
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iTOL_template_strips.txt
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DATASET_COLORSTRIP
#In colored strip datasets, each ID is associated to a color box/strip and can have an optional label. Color can be specified in hexadecimal, RGB or RGBA notation. When using RGB or RGBA notation, you cannot use COMMA as the dataset separator
#lines starting with a hash are comments and ignored during parsing
#=================================================================#
# MANDATORY SETTINGS #
#=================================================================#
#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throughout this file (except in the SEPARATOR line, which uses space).
SEPARATOR TAB
#SEPARATOR COMMA
#SEPARATOR SPACE
#label is used in the legend table (can be changed later)
DATASET_LABEL Strips
#dataset color (can be changed later)
COLOR #ff0000
#=================================================================#
# OPTIONAL SETTINGS #
#=================================================================#
#If COLOR_BRANCHES is set to 1, branches of the tree will be colored according to the colors of the strips above the leaves.
#When all children of a node have the same color, it will be colored the same, ie. the color will propagate inwards towards the root.
COLOR_BRANCHES 0
#each dataset can have a legend, which is defined below
#for each row in the legend, there should be one shape, color and label
#shape should be a number between 1 and 6:
#1: square
#2: circle
#3: star
#4: right pointing triangle
#5: left pointing triangle
#6: checkmark
#LEGEND_TITLE Dataset_legend
#LEGEND_SHAPES 1 1 2 2
#LEGEND_COLORS #ff0000 #00ff00 rgba(0,255,0,0.5) #0000ff
#LEGEND_LABELS value1 value2 value3 value4
#=================================================================#
# all other optional settings can be set or changed later #
# in the web interface (under 'Datasets' tab) #
#=================================================================#
#width of the colored strip
STRIP_WIDTH 50
#left margin, used to increase/decrease the spacing to the next dataset. Can be negative, causing datasets to overlap.
#MARGIN 0
#border width; if set above 0, a border of specified width (in pixels) will be drawn around the color strip
#BORDER_WIDTH 0
#border color; used when BORDER_WIDTH is above 0
#BORDER_COLOR #0000ff
#always show internal values; if set, values associated to internal nodes will be displayed even if these nodes are not collapsed. It could cause overlapping in the dataset display.
#SHOW_INTERNAL 0
#Internal tree nodes can be specified using IDs directly, or using the 'last common ancestor' method described in iTOL help pages
#=================================================================#
# Actual data follows after the "DATA" keyword #
#=================================================================#
DATA
at_AT4G17580 #b22222
al_16054918 #b22222
al_16047927 #b22222
gm_Glyma.05G064700 #b22222
pv_Phvul.003G224400 #b22222
gm_Glyma.17G146500 #b22222
cc_C.cajan_27233 #b22222
mt_Medtr5g013340 #b22222
ca_2278 #b22222
pv_Phvul.002G001400 #b22222
cc_C.cajan_13043 #b22222
cc_C.cajan_13050 #b22222
gm_Glyma.11G037700 #b22222
gm_Glyma.01G205200 #b22222
at_AT5G47120 #b22222
al_16043284 #b22222
br_Brara.B02945 #b22222
bo_Bo2g132200 #b22222
br_Brara.I01977 #b22222
bo_Bo9g069310 #b22222
cb_Carubv10028224m #b22222
cb_Carubv10007660m #b22222
sb_Sobic.004G024200 #b22222
zm_GRMZM2G027726 #b22222
zm_GRMZM2G029087 #b22222
si_Si018163 #b22222
os_LOC_Os02g03280 #b22222
bd_Bradi3g02520 #b22222
si_Si007155 #b22222
zm_GRMZM2G163877 #b22222
sb_Sobic.010G000300 #b22222
si_Si022983 #1e90ff
sb_Sobic.009G131100 #1e90ff
zm_GRMZM2G479608 #1e90ff
os_LOC_Os05g33360 #1e90ff
bd_Bradi2g25870 #1e90ff
mt_Medtr2g021130 #1e90ff
ca_130549 #1e90ff
cc_C.cajan_05266 #1e90ff
pv_Phvul.006G157400 #1e90ff
gm_Glyma.13G211300 #1e90ff
gm_Glyma.15G101400 #1e90ff
al_16039165 #1e90ff
cb_Carubv10005406m #1e90ff
at_AT4G15470 #1e90ff
bo_Bo7g103760 #1e90ff
br_Brara.C04437 #1e90ff
br_Brara.H00806 #1e90ff
bo_Bo8g040670 #1e90ff
mt_Medtr1g110390 #1e90ff
ca_84247 #1e90ff
cc_C.cajan_07647 #1e90ff
pv_Phvul.007G029100 #1e90ff
gm_Glyma.20G117300 #1e90ff
gm_Glyma.10G272600 #1e90ff
br_Brara.A02046 #1e90ff
bo_Bo1g057620 #1e90ff
cb_Carubv10007653m #1e90ff
at_AT4G14730 #1e90ff
al_16049055 #1e90ff
zm_GRMZM2G095898 #1e90ff
sb_Sobic.005G166100 #1e90ff
si_Si026757 #1e90ff
os_LOC_Os11g37200 #1e90ff
bd_Bradi4g15160 #1e90ff
os_LOC_Os03g58140 #1e90ff
bd_Bradi1g05570 #1e90ff
os_LOC_Os07g08060 #1e90ff
bd_Bradi1g55660 #1e90ff
si_Si038585 #1e90ff
zm_GRMZM2G074356 #1e90ff
sb_Sobic.001G057900 #1e90ff
os_LOC_Os03g53400 #1e90ff
bd_Bradi1g08870 #1e90ff
zm_GRMZM2G128617 #1e90ff
zm_GRMZM2G014672 #1e90ff
si_Si037166 #1e90ff
sb_Sobic.001G092600 #1e90ff
bd_Bradi1g55650 #1e90ff
os_LOC_Os07g08070 #1e90ff
si_Si030923 #1e90ff
zm_GRMZM2G132568 #1e90ff
sb_Sobic.002G051700 #1e90ff
os_LOC_Os03g58150 #1e90ff
bd_Bradi1g05560 #1e90ff
si_Si037225 #1e90ff
zm_GRMZM2G099449 #1e90ff
zm_GRMZM2G074404 #1e90ff
sb_Sobic.001G057800 #1e90ff
at_AT3G63310 #1e90ff
al_16036121 #1e90ff
cb_Carubv10018936m #1e90ff
br_Brara.D00010 #1e90ff
bo_Bo4g097050 #1e90ff
br_Brara.J00158 #1e90ff
cb_Carubv10011301m #1e90ff
at_AT1G03070 #1e90ff
al_16054537 #1e90ff
br_Brara.B02623 #1e90ff
bo_Bo2g100640 #1e90ff
cb_Carubv10001524m #1e90ff
at_AT4G02690 #1e90ff
al_16045305 #1e90ff
mt_Medtr1g071430 #1e90ff
ca_75062 #1e90ff
pv_Phvul.007G174500 #1e90ff
cc_C.cajan_30364 #1e90ff
gm_Glyma.10G029400 #1e90ff
gm_Glyma.02G144700 #1e90ff
gm_Glyma.19G159300 #1e90ff
mt_Medtr7g095600 #1e90ff
pv_Phvul.001G154500 #1e90ff
cc_C.cajan_30806 #1e90ff
ca_106480 #1e90ff
mt_Medtr7g095640 #1e90ff
mt_Medtr7g095530 #1e90ff
mt_Medtr7g095510 #1e90ff