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21 Open 1 Closed
21 Open 1 Closed
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Issues list

Function for fitting COMETS parameters enhancement New feature or request
#36 opened Aug 11, 2023 by hgscott
Find other older tools
#35 opened Aug 4, 2023 by hgscott
@hgscott
Add disclaimer to repo
#34 opened Aug 4, 2023 by hgscott
@hgscott
Documentation Discussing Best Practices
#30 opened Jul 27, 2023 by hgscott
@hgscott
Function to add documentation/confidence scores with a new model version
#29 opened Jul 26, 2023 by hgscott
Function to export the model to a table enhancement New feature or request
#27 opened Jul 26, 2023 by hgscott
@hgscott
Function for checking for a maintenance reaction enhancement New feature or request good first issue Good for newcomers
#25 opened Apr 16, 2023 by hgscott
Function for finding block biomass precursors enhancement New feature or request good first issue Good for newcomers
#24 opened Feb 17, 2023 by hgscott
@hgscott
1
Function to maximize the production of a certain metabolite enhancement New feature or request
#23 opened Jan 20, 2023 by hgscott
Function for hybrid plotting of networks enhancement New feature or request
#22 opened Jan 20, 2023 by hgscott
Function to import database from ModelSEED enhancement New feature or request
#21 opened Jan 20, 2023 by hgscott
Plan modules (Broad categories) help wanted Extra attention is needed question Further information is requested
#20 opened Jan 16, 2023 by hgscott
1
Utility to copy highly connected metabolites enhancement New feature or request good first issue Good for newcomers
#17 opened Jan 16, 2023 by hgscott
Utility to construct networkx bipartite graph, with arrow thickness enhancement New feature or request good first issue Good for newcomers
#16 opened Jan 16, 2023 by hgscott
Utility to pretty print reactions and their fluxes enhancement New feature or request good first issue Good for newcomers
#15 opened Jan 16, 2023 by hgscott
Utility to pretty print a single reaction, given a S column vector enhancement New feature or request good first issue Good for newcomers
#14 opened Jan 16, 2023 by hgscott
Utility to create GraphViz Graph from COBRA model enhancement New feature or request good first issue Good for newcomers
#13 opened Jan 16, 2023 by hgscott
Utility to print all reactions and lower/upper bounds, as well as metabolites in the model enhancement New feature or request good first issue Good for newcomers
#12 opened Jan 16, 2023 by hgscott
Utility to visualize the S matrix enhancement New feature or request good first issue Good for newcomers
#11 opened Jan 16, 2023 by hgscott
Utility to extract the stoichiometric matrix from a COBRA model enhancement New feature or request good first issue Good for newcomers
#10 opened Jan 16, 2023 by hgscott
Utility that compares two models and makes a recall matrix (for genes and reactions) enhancement New feature or request
#8 opened Jan 16, 2023 by hgscott
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