Biomass coordinates don't match the flux coordinates

[hgscott]

When trying to plot the biomass image from I noticed that the location was not as expected.
I set the initial biomass location to (0,0) but got the following plot:

However, when I looked at the fluxes, they were in the correct (top right) corner.

As I detailed here the actual coordinates in the data frames are not the same.

And when the get_biomass_image function subtracts 1 from the coordinates it causes the locations to shift, as I showed here.

[hgscott]

What is generating the fluxes_by_species dataframes? Where are the coordinates in that dataframe coming from?

[jeremymchacon]

It is made by comets.__build_readable_flux_object(). However, that pulls directly from comets.fluxes, so I think the problem must originate in the fluxes object.

…

On Mon, Sep 25, 2023 at 2:57 PM Helen G Scott ***@***.***> wrote: What is generating the fluxes_by_species dataframes? Where are the coordinates in that dataframe coming from? — Reply to this email directly, view it on GitHub <#44 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABLGCRKZXJWHES5ATV6N743X4HO4BANCNFSM6AAAAAA5GTOD54> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

-- *Jeremy M. Chacón, Ph.D.* *he / him / his* *Bioinformatics Analyst* *RI Bioinformatics* *Minnesota Supercomputing Institute* *University of Minnesota*

[hgscott]

Thanks @jeremymchacon, I'll talk to Ilija about it then!