ReadMe

The data and R markdown files in this repository were used to perform the
analyses and generate the figures and supplementary tables for
Forchielli, Elena, Daniel Sher, and Daniel Segrè. 2022. “Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals 
Diverse Metabolic Adaptations and Lifestyle Strategies.” bioRxiv. https://doi.org/10.1101/2022.01.07.475430..

The paper, along with all supplementary materials can be found here:
https://www.biorxiv.org/content/10.1101/2022.01.07.475430v2

This repository is organized according to the primary figures, with each
directory containing the .Rmd file used to generate the figures. The data for
all figures is located in the data directory. The Supplementary Figures
directory contains the .Rmd files used to generate Supplementary Figures S1, S2,
and S4. The code to generate Supplementary Figures S3, S5, and S6 is located in
the .Rmd files for primary Figures 1, 5, and 2, respectively.

For a description of the .Rmd files, including a list of the primary and
supplementary figures generated with each file, please see `File Descriptions`.
`File Descriptions` also includes which Supplementary Tables are relevant to
each .Rmd file.