From 579c936a06165419c562f391d6b578c27c0db7fa Mon Sep 17 00:00:00 2001
From: Sebastian Schoenherr <sebastian.schoenherr@i-med.ac.at>
Date: Tue, 9 Oct 2018 18:16:50 +0200
Subject: [PATCH] Update README.md

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 7bc51b2..7b2c8e0 100644
--- a/README.md
+++ b/README.md
@@ -10,9 +10,9 @@ mtDNA-Server uses this library to detect heteroplasmic and homoplasmic sites. Pl
 ## Standalone Usage
 You can also run Mutation-Server Core as a standalone tool starting with BAM files. 
 ```
-wget https://github.com/seppinho/mutation-server/releases/download/v1.1.6/mutation-server-1.1.6.jar
+wget https://github.com/seppinho/mutation-server/releases/download/v1.1.7/mutation-server-1.1.7.jar
 
-java -jar mutation-server-1.1.6.jar  analyse-local --input <input-folder> --reference <ref.fasta> --level 0.01 --outputRaw raw.txt --outputVar var.txt --baq true --baseQ 20 --mapQ 20 --alignQ 30 --indel true
+java -jar mutation-server-1.1.7.jar  analyse-local --input <input-folder> --output <output-folder> --reference <ref.fasta> --level 0.01
 ```
 
 ## Output Format