diff --git a/src/test/java/genepi/mut/steps/MutserveTest.java b/src/test/java/genepi/mut/steps/MutserveTest.java index 93e475b..1f61ca7 100644 --- a/src/test/java/genepi/mut/steps/MutserveTest.java +++ b/src/test/java/genepi/mut/steps/MutserveTest.java @@ -214,6 +214,7 @@ public void test2Samples1000G() throws IOException { task.setInput(input); task.setReference(ref); task.setLevel(0.01); + task.setStrandBias(1.2); task.setVarName(out); task.setRawName(raw); TaskService.setAnsiSupport(false); @@ -284,6 +285,7 @@ public void test3Samples1000G() throws IOException { task.setInput(input); task.setReference(ref); task.setLevel(0.01); + task.setStrandBias(1.2); task.setVarName(out); task.setRawName(raw); TaskService.setAnsiSupport(false); @@ -296,6 +298,7 @@ public void test3Samples1000G() throws IOException { task.setInput(input); task.setReference(ref); task.setLevel(0.01); + task.setStrandBias(1.2); task.setVarName(out); task.setRawName(raw); TaskService.setAnsiSupport(false); @@ -315,6 +318,7 @@ public void test3Samples1000G() throws IOException { int count = 0; while (reader.next()) { String[] splits = reader.get().split("\t"); + System.out.println(reader.get()); if(splits[1].equals("PASS")) { count++; }