[INFRA] Fix sanitizer #831
Workflow file for this run
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| # SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Coverage | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| types: | |
| - unlabeled | |
| workflow_dispatch: | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.compiler }} | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: ["gcc-14"] | |
| container: | |
| image: ghcr.io/seqan/${{ matrix.compiler }} | |
| volumes: | |
| - /home/runner:/home/runner | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Load ccache | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/.ccache | |
| save-always: true | |
| key: ccache-${{ runner.os }}-${{ github.workflow }}-${{ matrix.compiler }}-${{ github.ref }} | |
| - name: Configure tests | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../test/coverage -DCMAKE_BUILD_TYPE=Coverage | |
| make -j gtest_main | |
| - name: Build tests | |
| working-directory: build | |
| run: | | |
| ccache -z | |
| make -k -j | |
| ccache -sv | |
| - name: Run tests | |
| working-directory: build | |
| run: ctest . -j --output-on-failure | |
| - name: Generate coverage report | |
| run: | | |
| gcovr --root ${GITHUB_WORKSPACE}/test/coverage \ | |
| ${GITHUB_WORKSPACE}/build \ | |
| --filter ${GITHUB_WORKSPACE}/include \ | |
| --filter ${GITHUB_WORKSPACE}/test/include \ | |
| --filter ${GITHUB_WORKSPACE}/src \ | |
| --exclude ${GITHUB_WORKSPACE}/include/hibf/contrib \ | |
| --exclude ${GITHUB_WORKSPACE}/test/include/hibf/test/iterator_test_template.hpp \ | |
| --exclude-lines-by-pattern '^\s*$' \ | |
| --exclude-lines-by-pattern '^\s*};$' \ | |
| --exclude-unreachable-branches \ | |
| --exclude-throw-branches \ | |
| --exclude-noncode-lines \ | |
| -j \ | |
| --cobertura \ | |
| --output ${GITHUB_WORKSPACE}/build/coverage_report.xml | |
| - name: Submit coverage build | |
| uses: codecov/[email protected] | |
| with: | |
| files: build/coverage_report.xml | |
| fail_ci_if_error: false |