Merge pull request #134 from eseiler/infra/license

[INFRA] Use SPDX License Indentifier

.clang-format

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 # Format all files in include folder, including std module, excluding contrib module
 # find . -iname "*.[ch]pp" -not -path "./include/hibf/contrib/*" -not -path "./submodules/*" -not -path "./build/*" | xargs clang-format-15 --style=file -i
 # Staged files: git diff --name-only HEAD --diff-filter=ACMRT | grep -E "(\.cpp|\.hpp)$" | xargs clang-format-15 --style=file -i

.clang-tidy

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 ---
 Checks: "bugprone*,
          performance*,

.cmake-format.yaml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 _hibf_cmake_format_documentation_only:
   install:
     command:

.codecov.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 # See https://docs.codecov.io/docs/codecovyml-reference
 codecov:
   token: 8e007bb5-3379-42a3-933a-8e3a0dad27ef

.editorconfig

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 # https://EditorConfig.org
 
 # top-most EditorConfig file

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: 🐞 Bug report
 description: Create a report to help us improve SeqAn3.
 labels: [bug]

.github/dependabot.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 # https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
 
 version: 2

.github/workflows/ci_coverage.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Coverage
 
 on:

.github/workflows/ci_documentation.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Documentation
 
 on:

.github/workflows/ci_iwyu.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: IWYU
 
 on:

.github/workflows/ci_license.yml

@@ -0,0 +1,34 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
+name: License
+
+on:
+  push:
+    branches:
+      - 'main'
+  pull_request:
+    types:
+      - unlabeled
+  workflow_dispatch:
+
+concurrency:
+  group: license-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: ${{ github.event_name != 'push' }}
+
+env:
+  TZ: Europe/Berlin
+
+jobs:
+  check:
+    name: REUSE Compliance
+    runs-on: ubuntu-22.04
+    timeout-minutes: 120
+    if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint'
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: REUSE Compliance Check
+        uses: fsfe/reuse-action@v2

.github/workflows/ci_lint.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Lint
 
 on:

.github/workflows/ci_linux.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Unit Linux
 
 on:

.github/workflows/ci_macos.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Unit macOS
 
 on:

.github/workflows/ci_misc.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Linux
 
 on:

.github/workflows/ci_util.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Util Linux
 
 on:

.github/workflows/readme_snippet.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Readme
 
 on:

.github/workflows/scripts/gcov.sh

@@ -1,4 +1,9 @@
 #!/usr/bin/env bash
+
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 set -Eeuo pipefail
 
 args=${@/--branch-counts/""}

.github/workflows/update_cookbook.yml

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 name: Cookbook
 
 on:

.gitmodules

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
 [submodule "submodules/sdsl-lite"]
 	path = submodules/sdsl-lite
 	url = https://github.com/xxsds/sdsl-lite.git

CHANGELOG.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+SPDX-License-Identifier: CC-BY-4.0
+-->
+
 # Changelog {#about_changelog}
 
 [TOC]

CMakeLists.txt

@@ -1,9 +1,6 @@
-# ------------------------------------------------------------------------------------------------------------
-# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
-# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
-# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
-# shipped with this file and also available at: https://github.com/seqan/hibf/blob/main/LICENSE.md
-# ------------------------------------------------------------------------------------------------------------
+# SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: BSD-3-Clause
 
 cmake_minimum_required (VERSION 3.5)
 

CODE_OF_CONDUCT.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+SPDX-License-Identifier: CC-BY-4.0
+-->
+
 # Code of Conduct {#about_code_of_conduct}
 
 The SeqAn project adheres to the [Berlin Code of Conduct](https://berlincodeofconduct.org/). From the code of conduct:

CONTRIBUTING.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2006-2023, Knut Reinert & Freie Universität Berlin
+SPDX-FileCopyrightText: 2016-2023, Knut Reinert & MPI für molekulare Genetik
+SPDX-License-Identifier: CC-BY-4.0
+-->
+
 # Contributing {#about_contributing}
 
 First of all, thanks for wanting to contribute to SeqAn! Community is important to us and we strive to maintain a great

LICENSES/BSD-3-Clause.txt

@@ -0,0 +1,11 @@
+Copyright (c) <year> <owner>. 
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.