[MISC] automatic linting

seqan · Aug 23, 2023 · 873a978 · 873a978
1 parent 1babecf
commit 873a978
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Showing 2 changed files with 13 additions and 7 deletions.
diff --git a/src/config.cpp b/src/config.cpp
@@ -22,7 +22,8 @@ void config::read_from(std::istream & stream)
     std::string line;
     std::stringstream config_str;
 
-    while(std::getline(stream, line) && line != prefix::meta_hibf_config_start);
+    while (std::getline(stream, line) && line != prefix::meta_hibf_config_start)
+        ;
 
     assert(line == prefix::meta_hibf_config_start);
 

diff --git a/src/detail/layout/layout.cpp b/src/detail/layout/layout.cpp
@@ -92,8 +92,11 @@ void hibf::layout::layout::read_from(std::istream & stream)
 
     // parse High Level max bin index
     constexpr size_t fullest_tbx_prefix_size = prefix::layout_fullest_technical_bin_idx.size();
-    assert(line.substr(prefix::layout_top_level.size() + 2, fullest_tbx_prefix_size) == prefix::layout_fullest_technical_bin_idx);
-    std::string_view const hibf_max_bin_str{line.begin() + prefix::layout_top_level.size() + 2 + fullest_tbx_prefix_size, line.end()};
+    assert(line.substr(prefix::layout_top_level.size() + 2, fullest_tbx_prefix_size)
+           == prefix::layout_fullest_technical_bin_idx);
+    std::string_view const hibf_max_bin_str{line.begin() + prefix::layout_top_level.size() + 2
+                                                + fullest_tbx_prefix_size,
+                                            line.end()};
     top_level_max_bin_id = parse_first_bin(hibf_max_bin_str);
 
     // read and parse header records, in order to sort them before adding them to the graph
@@ -106,8 +109,10 @@ void hibf::layout::layout::read_from(std::istream & stream)
             line.begin() + 1 /*#*/ + prefix::layout_lower_level.size() + 1 /*_*/,
             std::find(line.begin() + prefix::layout_lower_level.size() + 2, line.end(), ' ')};
 
-        assert(line.substr(prefix::layout_lower_level.size() + indices_str.size() + 3, fullest_tbx_prefix_size) == prefix::layout_fullest_technical_bin_idx);
-        std::string_view const max_id_str{line.begin() + prefix::layout_lower_level.size() + indices_str.size() + fullest_tbx_prefix_size + 3,
+        assert(line.substr(prefix::layout_lower_level.size() + indices_str.size() + 3, fullest_tbx_prefix_size)
+               == prefix::layout_fullest_technical_bin_idx);
+        std::string_view const max_id_str{line.begin() + prefix::layout_lower_level.size() + indices_str.size()
+                                              + fullest_tbx_prefix_size + 3,
                                           line.end()};
 
         max_bins.emplace_back(parse_bin_indices(indices_str), parse_first_bin(max_id_str));
@@ -123,8 +128,8 @@ void hibf::layout::layout::read_from(std::istream & stream)
 void hibf::layout::layout::write_to(std::ostream & stream) const
 {
     // write layout header with max bin ids
-    stream << prefix::layout_first_header_line << " "
-           << prefix::layout_fullest_technical_bin_idx << top_level_max_bin_id << '\n';
+    stream << prefix::layout_first_header_line << " " << prefix::layout_fullest_technical_bin_idx
+           << top_level_max_bin_id << '\n';
     for (auto const & max_bin : max_bins)
         stream << max_bin << '\n';