Compile with cutFEM

Ended up with setting the path to DealiiCutElements when I run cmake:

$ cmake -DCUTFEM_DIR=~/git/path/to/dealiicutelements/install ..
$ make -j4

Compile in Docker-container

Get the Deal.II docker image from https://hub.docker.com/r/dealii/dealii/

$ docker pull dealii/dealii

Run an interactive shell in the container with this project as a volume in the container

$ docker run -itv ~/path/to/microbubble:/home/dealii/microbubble
 dealii/dealii:<tag> 

If the project have already been compiled on the "outside" it may be necessary to delete all Cmake output before running the container.

Inside the container, compile by running

$ cd microbubble/
$ cmake .
$ make