install_cmake

#!/bin/bash

# Download and unzip SeqAn 2.0.0
wget http://packages.seqan.de/seqan-src/seqan-src-2.0.0.tar.gz
tar xfvz seqan-src-2.0.0.tar.gz

command="cd seqan-seqan-v2.0.0"
echo "$command"
eval $command
command="./util/bin/skel.py app suffix_tree_mapping ."
echo "$command"
eval $command
command="cp ../suffix_tree_mapping.cpp apps/suffix_tree_mapping/suffix_tree_mapping.cpp"
echo "$command"
eval $command
command="sed -i 's/#set (SEQAN_FIND_DEPENDENCIES NONE)/set (SEQAN_FIND_DEPENDENCIES OpenMP)/g' apps/suffix_tree_mapping/CMakeLists.txt"
echo "$command"
eval $command

command="cd ../"
echo "$command"
eval $command
command="mkdir -p build/release/"
echo "$command"
eval $command

command="cd build/release/"
echo "$command"
eval $command
command="cmake ../../seqan-seqan-v2.0.0 -DCMAKE_BUILD_TYPE=Release"
echo "$command"
eval $command
command="make suffix_tree_mapping"
echo "$command"
eval $command
command="cp bin/suffix_tree_mapping ../../"
echo "$command"
eval $command
command="cd ../../"
echo "$command"
eval $command