singularity.def

BootStrap: shub
From: sinzlab/pytorch-singularity:v3.8-torch1.7.0-dj0.12.7

%labels
MAINTAINER Arne Nix <arnenix@gmail.com>
%post
    # install third-party libraries
    git clone https://github.com/sinzlab/nnfabrik.git
    git clone -b readout_position_regularizer https://github.com/KonstantinWilleke/neuralpredictors
    git clone -b konsti_monkey_experiments https://github.com/sinzlab/mei
    git clone https://github.com/KonstantinWilleke/data_port
    git clone https://github.com/KonstantinWilleke/nndichromacy
    python -m pip install -e ./nnfabrik
    python -m pip install -e ./neuralpredictors
    python -m pip install -e ./mei
    python -m pip install -e ./data_port
    python -m pip install -e ./nndichromacy

%environment
    
%startscript
    exec "$@"
%runscript
    exec "$@"