requirements.txt

absl-py==2.1.0
accelerate==0.34.2
alembic==1.13.1
annotated-types==0.7.0
astunparse==1.6.3
async-generator==1.10
batchspawner==1.2.0
binaryornot==0.4.4
certipy==0.1.3
click-plugins==1.1.1
coloredlogs==15.0.1
constantly==15.1.0
cyvcf2==0.31.1
datasets==3.0.0
dm-tree==0.1.8
docker-image-py==0.1.12
duckdb==0.10.0
flatbuffers==24.3.7
flit==3.9.0
flit_core==3.9.0
gast==0.5.4
google-pasta==0.2.0
gdown
greenlet==3.0.3
grpcio==1.62.1
gurobipy==11.0.1
h5py==3.10.0
hpack==4.0.0
huggingface-hub==0.24.6
humanfriendly==10.0
inotify==0.2.10
invoke==2.2.0
ipython-genutils==0.2.0
jax==0.4.25
jupyter-telemetry==0.1.0
jupyterhub==4.0.2
keras==3.0.5
libclang==16.0.6
llvmlite==0.42.0
Mako==1.3.2
Markdown==3.5.2
ml-dtypes==0.3.2
mpi4py==3.1.5
munkres==1.1.4
namex==0.0.7
opt-einsum==3.3.0
pamela==1.1.0
pkg-name-validator==1.0.0
ply==3.11
protobuf==4.25.3
pyairtable==2.3.3
pyarrow==15.0.0
pyBigWig==0.3.23
pydantic==2.8.2
pydantic_core==2.20.1
PyDispatcher==2.0.5
PyQt5==5.15.9
PyQt5-sip==12.12.2
PyQtWebEngine==5.15.4
repo2podman==0.2.0
requests==2.32.3
rpy2==3.5.16
safetensors==0.4.4
setuptools==69.1.1
shortuuid==1.0.13
SQLAlchemy==2.0.28
tensorboard==2.16.2
tensorboard-data-server==0.7.2
tensorflow==2.16.1
tensorflow-estimator==2.15.0
tensorrt==10.0.1
tensorrt-cu12==10.0.1
tensorrt-cu12-bindings==10.0.1
tensorrt-cu12-libs==10.0.1
termcolor==2.4.0
tokenizers==0.19.1
tomli_w==1.0.0
torch==2.2.1
torchaudio==2.2.1
torchvision==0.17.1
tqdm==4.66.5
transformers==4.44.1
tzlocal==5.2
wheel==0.42.0
xxhash==3.5.0
zstandard==0.22.0