diff --git a/.gitignore b/.gitignore index dd50793..7d27540 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,7 @@ # setup.py files MANIFEST dist +rnasieve.egg-info # Mac files .DS_Store diff --git a/README.md b/README.md index 183691a..b6768fe 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ RNA-Sieve is a method for the deconvolution of bulk cell samples via single-cell RNA expression data. -![RNA-sieve-viz](readme_figures/deconvolution_plot_3d.png) +![RNA-sieve-viz](https://raw.githubusercontent.com/songlab-cal/rna-sieve/v_0_1_1/readme_figures/deconvolution_plot_3d.png) ## Associated Work Our preprint is currently available at [https://www.biorxiv.org/content/10.1101/2020.10.01.322867v1](https://www.biorxiv.org/content/10.1101/2020.10.01.322867v1). @@ -21,7 +21,7 @@ $ pip3 install rna-sieve ## Example Usage -![muscle-FD-example](readme_figures/muscle_age_FD.png) +![muscle-FD-example](https://raw.githubusercontent.com/songlab-cal/rna-sieve/v_0_1_1/readme_figures/muscle_age_FD.png) For example usage, please reference [the example Jupyter notebook](https://github.com/songlab-cal/rna-sieve/blob/master/examples/example.ipynb) for Python 3 usage, or [the Mathematica notebook](https://github.com/songlab-cal/rna-sieve/blob/master/mathematica/rnasieve.nb) for Mathematica usage. diff --git a/setup.py b/setup.py index 1e35000..3e1809b 100644 --- a/setup.py +++ b/setup.py @@ -7,7 +7,7 @@ setup( name='rnasieve', packages=['rnasieve'], - version='0.1.1', + version='0.1.2', license='GPL', description='A library for the statistical deconvolution of RNA bulk samples with single-cell references.', long_description=long_description, @@ -15,7 +15,7 @@ author='Justin Hong', author_email='justinhong@berkeley.edu', url='https://github.com/songlab-cal/rna-sieve', - download_url='https://github.com/songlab-cal/archive/v_0_1_1.tar.gz', + download_url='https://github.com/songlab-cal/archive/v_0_1_2.tar.gz', keywords=[ 'rna', 'deconvolution',