Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Missing Interpro and Pfam entries #46

Open
steppi opened this issue Oct 11, 2018 · 0 comments
Open

Missing Interpro and Pfam entries #46

steppi opened this issue Oct 11, 2018 · 0 comments

Comments

@steppi
Copy link

steppi commented Oct 11, 2018

Some entries in the Interpro and Pfam name spaces are not mapped to Famplex entries. The attached tsv-file contains 231 entries that may be worth looking into. 35 of them come from Interpro and the other 196 from Pfam. Many are things that should not be added to Famplex.

The attached file has three columns, name_space, entry, and text. name_space is one of IP or PF for Interpro or Pfam respectively, entry contains the associated Interpro or Pfam id, and text is a comma delimited list of raw texts associated with this entry in the REACH output.
fplx_missing_entries.txt

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant