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Code developped for a white paper published on our Wiki.
Full information about the RNASeq hands-on training can be found on our BITS WIKI in the dedicated pages starting at Compare_Popular_Read_Mappers
The code posted here will be maintained and might be different from that cointained in the virtualbox image used during the training.
This repo presents two folders for
- scripts: code relative to the unix command-line manipulation of the reads (QC, mapping, post-processing, ...)
- R-scripts: the R/bioconductor analysis of the gene counts obtained from the mapping of the reads (EdgeR, Deseq2, RobiNA, ...)
Related work can be found in many places, please find here a starter
Please send comments and feedback to [email protected]
This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License.